HHsearch alignment for GI: 255764460 and conserved domain: cd03229
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00037 Score=45.83 Aligned_cols=119 Identities=25% Similarity=0.423 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH-----HHHHHCCCH------------HHEEEE
Q ss_conf 726880799970687237899999987520089879999738855668-----899819883------------344897
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI-----YARKLGVDL------------KNLLIS 125 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~-----~a~~~Gvd~------------~~l~~~ 125 (363)
T Consensus 22 ~i~~Ge~~~ivGpSG~GKSTl-lr~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~tv~eNv~~- 99 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTL-LRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL- 99 (178)
T ss_pred EECCCCEEEEECCCCCHHHHH-HHHHHCCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHCE-
T ss_conf 988998999999999839999-999985999996399999999988861024541775999269988998928996008-
Q ss_pred ECCC-HH-HHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2584-89-9999999997448976899814-3332202655434555302247888767767777642017818999863
Q gi|255764460|r 126 QPDT-GE-QALEITDMLVRSGAVDIIVIDS-VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 (363)
Q Consensus 126 ~~~~-~E-~~~~i~~~li~~~~~~liViDS-i~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ 202 (363)
T Consensus 100 -~LSGGq~QRvaIARAL~~~--P~ill~DEPts~LD~~-------------~~~~i----~~~l~~l~~~~~~t~i~vTH 159 (178)
T cd03229 100 -GLSGGQQQRVALARALAMD--PDVLLLDEPTSALDPI-------------TRREV----RALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred -ECCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCHH-------------HHHHH----HHHHHHHHHHHCCEEEEECC
T ss_conf -1772688999999998529--9999970897647999-------------99999----99999999964999999989
Q ss_pred C
Q ss_conf 4
Q gi|255764460|r 203 M 203 (363)
Q Consensus 203 ~ 203 (363)
T Consensus 160 d 160 (178)
T cd03229 160 D 160 (178)
T ss_pred C
T ss_conf 9