HHsearch alignment for GI: 255764460 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00061 Score=44.50 Aligned_cols=88 Identities=25% Similarity=0.317 Sum_probs=47.9
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHH-----
Q ss_conf 97268807999706872378999999875200898--79999738855668899819883344897258489999-----
Q gi|255764460|r 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG--TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL----- 134 (363)
Q Consensus 62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~--~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~----- 134 (363)
T Consensus 28 ~~i~~Ge~~~llGpnGaGKSTLl-~~l~g~~~~~~~~G~i~~~g~-~~~~~~~~~igyv~q~~~~~~~~tv~e~l~~~~~ 105 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLL-DVLAGRKTAGVITGEILINGR-PLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL 105 (192)
T ss_pred EEEECCEEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEEEECCE-ECCHHHHHHEEEEECCHHCCCCCHHHHHHHHHHH
T ss_conf 89928839999999999889999-998379878831789998782-7667756227999411330734549999986677
Q ss_pred ------------HHHHHHHHCCCCCEEEEEC
Q ss_conf ------------9999997448976899814
Q gi|255764460|r 135 ------------EITDMLVRSGAVDIIVIDS 153 (363)
Q Consensus 135 ------------~i~~~li~~~~~~liViDS 153 (363)
T Consensus 106 l~~LS~gqrqrv~iA~aL~~--~P~lllLDE 134 (192)
T cd03232 106 LRGLSVEQRKRLTIGVELAA--KPSILFLDE 134 (192)
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf 73379767658999999844--998899848