HHsearch alignment for GI: 255764460 and conserved domain: cd03243
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.59 E-value=0.074 Score=31.31 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=78.7
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH--HHCCCEEEEEECCCC-CCHHHHHHHCCCHHHEEEE--ECC
Q ss_conf 89997238972688079997068723789999998752--008987999973885-5668899819883344897--258
Q gi|255764460|r 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEHA-LDSIYARKLGVDLKNLLIS--QPD 128 (363)
Q Consensus 54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~--qk~g~~~~~iD~E~~-~~~~~a~~~Gvd~~~l~~~--~~~ 128 (363)
T Consensus 21 pNdi~l~-~----~~~~iiTGpN~sGKSt~lkti~l~~~laq~G~~---vpa~~~~~~~---------~~~i~~~~~~~d 83 (202)
T cd03243 21 PNDINLG-S----GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF---VPAESASIPL---------VDRIFTRIGAED 83 (202)
T ss_pred CCEEEEC-C----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCE---EEECCCEEEC---------CCEEEEEECCCH
T ss_conf 7828867-9----828999899887539999999999999983873---7204468944---------666999846602
Q ss_pred C--------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 4--------89999999999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r 129 T--------GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 (363)
Q Consensus 129 ~--------~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i 200 (363)
T Consensus 84 ~~~~~~S~F~~e~~~~~~i~~~~~~~slvliDE~~~gT~~~--e----------g~~la~a~l~~l~----~~~~~~i~t 147 (202)
T cd03243 84 SISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTA--E----------GLAIAYAVLEHLL----EKGCRTLFA 147 (202)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH--H----------HHHHHHHHHHHHH----HCCCEEEEE
T ss_conf 44435354999999999999867777724205234799867--8----------7999999999998----536849998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 63411456654665125655311111124897504553445772476799987740577898515899986187423111
Q gi|255764460|r 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 (363)
Q Consensus 201 NQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~ 280 (363)
T Consensus 148 TH~~~L~~-~---~~~~~~---~~~~----------------------~~~~~~~~~-------~~~~~Ykl~~G~~~~s 191 (202)
T cd03243 148 THFHELAD-L---PEQVPG---VKNL----------------------HMEELITTG-------GLTFTYKLIDGICDPS 191 (202)
T ss_pred ECCHHHHH-H---HHCCCC---EEEE----------------------EEEEEEECC-------EEEEEEEECCCCCCCC
T ss_conf 25388887-5---313897---4999----------------------999999799-------0869889888999865
Q ss_pred HHHHHHHHCCC
Q ss_conf 59999973286
Q gi|255764460|r 281 ELIDLGVKASI 291 (363)
Q Consensus 281 ~lldla~~~gi 291 (363)
T Consensus 192 ~ai~ia~~~Gl 202 (202)
T cd03243 192 YALQIAELAGL 202 (202)
T ss_pred HHHHHHHHCCC
T ss_conf 99999998589