HHsearch alignment for GI: 255764460 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.50 E-value=0.0011 Score=42.91 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHHCCCHHHEEEEE---------CCCHH
Q ss_conf 72688079997068723789999998752008987999973885--56688998198833448972---------58489
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKNLLISQ---------PDTGE 131 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~Gvd~~~l~~~~---------~~~~E 131 (363)
T Consensus 24 ~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i-~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgG 102 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEE-EECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHH
T ss_conf 986999999999998759999999986176678869-9999988997899997208983556364541998628888999
Q ss_pred --HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf --999999999744897689981433
Q gi|255764460|r 132 --QALEITDMLVRSGAVDIIVIDSVA 155 (363)
Q Consensus 132 --~~~~i~~~li~~~~~~liViDSi~ 155 (363)
T Consensus 103 qkqRv~iAral~~~--p~ililDEpt 126 (178)
T cd03247 103 ERQRLALARILLQD--APIVLLDEPT 126 (178)
T ss_pred HHHHHHHHHHHHHC--CCEEEECCCC
T ss_conf 99999999999649--7976722865