HHsearch alignment for GI: 255764460 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.50  E-value=0.0011  Score=42.91  Aligned_cols=90  Identities=19%  Similarity=0.298  Sum_probs=53.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHHCCCHHHEEEEE---------CCCHH
Q ss_conf             72688079997068723789999998752008987999973885--56688998198833448972---------58489
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKNLLISQ---------PDTGE  131 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~Gvd~~~l~~~~---------~~~~E  131 (363)
T Consensus        24 ~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i-~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgG  102 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG  102 (178)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEE-EECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHH
T ss_conf             986999999999998759999999986176678869-9999988997899997208983556364541998628888999


Q ss_pred             --HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             --999999999744897689981433
Q gi|255764460|r  132 --QALEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       132 --~~~~i~~~li~~~~~~liViDSi~  155 (363)
T Consensus       103 qkqRv~iAral~~~--p~ililDEpt  126 (178)
T cd03247         103 ERQRLALARILLQD--APIVLLDEPT  126 (178)
T ss_pred             HHHHHHHHHHHHHC--CCEEEECCCC
T ss_conf             99999999999649--7976722865