HHsearch alignment for GI: 255764460 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.019 Score=35.00 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=30.1
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 72688079997068723789999998752008987999973
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~ 103 (363)
T Consensus 24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g 63 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDG 63 (234)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECC
T ss_conf 987999999998999829999999966766788689-9999