HHsearch alignment for GI: 255764460 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.42 E-value=0.0018 Score=41.58 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=41.5
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCC-CH-HHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf 726880799970687237899999987520-089879999738855-66-88998198833448972584899999
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHAL-DS-IYARKLGVDLKNLLISQPDTGEQALE 135 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~-~~-~~a~~~Gvd~~~l~~~~~~~~E~~~~ 135 (363)
T Consensus 27 ~i~~Gei~gllG~NGaGKSTll-k~i~Gl~~p~~G~i~-i~G~d~~~~~~~~r~~ig~~~q~~~l~~~ltv~e~l~ 100 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTL-RMLAGLLEPDAGFAT-VDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLE 100 (218)
T ss_pred EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEE-ECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 9859829999999998499999-999779778974899-9999988697989628799807766799998999999