HHsearch alignment for GI: 255764460 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.48 E-value=0.0023 Score=40.80 Aligned_cols=53 Identities=30% Similarity=0.434 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCC--CCHHHHHHHCC
Q ss_conf 726880799970687237899999987520-08987999973885--56688998198
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHA--LDSIYARKLGV 117 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~--~~~~~a~~~Gv 117 (363)
T Consensus 43 ~i~~Gei~gLlGpNGaGKSTll-k~l~Gl~~p~~G~I-~v~G~~~~~~~~~~~~~ig~ 98 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTL-KILSGLLQPTSGEV-RVAGLVPWKRRKKFLRRIGV 98 (236)
T ss_pred EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEE-EECCEECCCCHHHHHHHEEE
T ss_conf 8848959999999983099999-99964948871599-99999851040988843799