HHsearch alignment for GI: 255764460 and conserved domain: cd03293

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15  E-value=0.004  Score=39.33  Aligned_cols=40  Identities=30%  Similarity=0.497  Sum_probs=28.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             72688079997068723789999998752008987999973
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA  103 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~  103 (363)
T Consensus        26 ~i~~Ge~~~iiGpsGsGKSTLl-~~i~Gl~~p~~G~I~~~G   65 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTLL-RIIAGLERPTSGEVLVDG   65 (220)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECC
T ss_conf             9879989999999995799999-999759998873899999