HHsearch alignment for GI: 255764460 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0063 Score=38.07 Aligned_cols=40 Identities=33% Similarity=0.524 Sum_probs=30.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 26880799970687237899999987520089879999738
Q gi|255764460|r 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 (363)
Q Consensus 64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E 104 (363)
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl-~li~Gl~~p~sG~I~i~G~ 60 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLL-NLIAGFETPQSGRVLINGV 60 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf 889989999999995599999-9997699988529999999