Query         gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 363
No_of_seqs    199 out of 1494
Neff          6.1 
Searched_HMMs 39220
Date          Mon May 23 10:21:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764460.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK09354 recA recombinase A; P 100.0       0       0  817.8  36.5  334    8-343     3-336 (350)
  2 TIGR02012 tigrfam_recA protein 100.0       0       0  793.4  23.4  321   11-333     1-322 (322)
  3 cd00983 recA RecA is a  bacter 100.0       0       0  768.7  34.2  324   11-336     1-324 (325)
  4 pfam00154 RecA recA bacterial  100.0       0       0  764.3  33.8  322   14-337     1-322 (322)
  5 PRK09519 recA recombinase A; R 100.0       0       0  742.0  30.1  251    9-261     4-254 (790)
  6 COG0468 RecA RecA/RadA recombi 100.0       0       0  475.9  22.5  273    9-290     4-279 (279)
  7 cd01393 recA_like RecA is a  b 100.0       0       0  364.9  18.8  209   48-268     1-226 (226)
  8 PRK04301 radA DNA repair and r 100.0       0       0  313.6  21.2  229   33-277    70-316 (318)
  9 pfam08423 Rad51 Rad51. Rad51 i 100.0       0       0  309.8  20.6  226   37-278    14-259 (261)
 10 TIGR02236 recomb_radA DNA repa 100.0 4.2E-45       0  304.6  16.2  240   11-270    45-326 (333)
 11 PTZ00035 Rad51; Provisional    100.0   7E-44       0  297.1  19.7  245   13-278    82-346 (350)
 12 PRK09361 radB DNA repair and r 100.0   3E-42       0  286.7  21.9  214   45-279     2-223 (224)
 13 cd01123 Rad51_DMC1_radA Rad51_ 100.0 4.7E-41 1.4E-45  279.2  20.9  213   48-276     1-234 (235)
 14 cd01394 radB RadB. The archaea 100.0 3.1E-40 8.4E-45  274.0  21.3  211   48-277     1-218 (218)
 15 TIGR02238 recomb_DMC1 meiotic  100.0 8.8E-38 2.2E-42  258.5   8.0  237   14-272    49-308 (314)
 16 TIGR02237 recomb_radB DNA repa 100.0 1.4E-34 3.6E-39  238.3  16.8  205   55-271     1-218 (223)
 17 KOG1434 consensus              100.0 1.4E-33 3.5E-38  232.0   9.6  225   38-278    87-332 (335)
 18 TIGR02239 recomb_RAD51 DNA rep  99.9 4.9E-27 1.3E-31  190.5   9.3  226   37-278    67-314 (317)
 19 KOG1564 consensus               99.9 9.4E-25 2.4E-29  176.1  15.3  219   46-271    82-344 (351)
 20 KOG1433 consensus               99.9 1.3E-26 3.3E-31  187.9  -1.5  315    7-334     1-322 (326)
 21 PRK04328 hypothetical protein;  99.9 1.6E-21   4E-26  155.7  19.7  209   45-283     3-239 (250)
 22 KOG1433 consensus               99.9 1.2E-23 3.1E-28  169.1   8.1  205   43-263    88-308 (326)
 23 cd01121 Sms Sms (bacterial rad  99.9 2.4E-21 6.2E-26  154.5  18.6  211   43-283    59-275 (372)
 24 pfam06745 KaiC KaiC. This fami  99.9   1E-20 2.7E-25  150.5  19.8  203   48-279     1-227 (231)
 25 PRK09302 circadian clock prote  99.9 1.5E-20 3.7E-25  149.6  20.1  207   45-278   245-464 (501)
 26 PRK06067 flagellar accessory p  99.9 1.4E-20 3.7E-25  149.6  19.1  206   43-279     9-234 (241)
 27 PRK11823 DNA repair protein Ra  99.9 7.9E-21   2E-25  151.3  17.7  206   42-278    66-274 (454)
 28 cd01120 RecA-like_NTPases RecA  99.9 1.1E-20 2.8E-25  150.3  14.6  157   69-235     1-165 (165)
 29 COG1066 Sms Predicted ATP-depe  99.9 2.6E-19 6.7E-24  141.7  19.2  172   42-234    69-242 (456)
 30 PRK09302 circadian clock prote  99.8   7E-19 1.8E-23  139.0  15.7  149   44-205     2-171 (501)
 31 PRK09519 recA recombinase A; R  99.8 1.1E-20 2.8E-25  150.4   4.3  323   10-341   361-774 (790)
 32 PRK08533 flagellar accessory p  99.8 1.2E-16 3.1E-21  124.8  19.1  203   46-279     4-225 (230)
 33 TIGR00416 sms DNA repair prote  99.7 6.6E-17 1.7E-21  126.5  12.4  173   42-234    79-270 (481)
 34 COG0467 RAD55 RecA-superfamily  99.7 3.3E-15 8.3E-20  115.8  20.5  212   45-283     2-237 (260)
 35 cd00984 DnaB_C DnaB helicase C  99.7 6.5E-15 1.7E-19  113.9  19.5  204   54-273     2-241 (242)
 36 cd01122 GP4d_helicase GP4d_hel  99.7 1.9E-14 4.9E-19  110.9  21.7  203   48-263    13-254 (271)
 37 TIGR03600 phage_DnaB phage rep  99.6 4.9E-13 1.3E-17  102.0  22.5  211   45-272   174-421 (421)
 38 PRK08760 replicative DNA helic  99.6 2.4E-12   6E-17   97.7  22.0  223   44-281   208-466 (476)
 39 PRK05748 replicative DNA helic  99.6 3.2E-12 8.1E-17   96.9  22.6  223   44-280   182-440 (448)
 40 pfam03796 DnaB_C DnaB-like hel  99.6 5.2E-14 1.3E-18  108.2  13.4  148   48-204     2-181 (186)
 41 PRK07004 replicative DNA helic  99.6 1.6E-12 4.1E-17   98.8  20.6  220   45-280   193-449 (460)
 42 PRK05595 replicative DNA helic  99.6 1.8E-12 4.5E-17   98.5  20.7  221   45-280   181-436 (444)
 43 PRK05636 replicative DNA helic  99.6   2E-12 5.2E-17   98.1  20.9  219   46-280   248-502 (507)
 44 PRK07263 consensus              99.6 3.4E-12 8.6E-17   96.7  21.8  222   45-282   183-447 (453)
 45 PRK09165 replicative DNA helic  99.6 2.4E-12 6.1E-17   97.7  20.8  226   44-281   184-474 (484)
 46 cd01124 KaiC KaiC is a circadi  99.6 1.6E-13 4.2E-18  105.0  14.3  164   70-261     2-184 (187)
 47 PRK08840 replicative DNA helic  99.6 3.6E-12 9.2E-17   96.5  21.0  224   45-283   197-457 (464)
 48 PRK08082 consensus              99.6 5.1E-12 1.3E-16   95.6  21.4  222   45-281   183-440 (453)
 49 PRK08006 replicative DNA helic  99.5 9.2E-12 2.4E-16   93.9  21.2  222   45-282   204-463 (471)
 50 COG2874 FlaH Predicted ATPases  99.5 6.5E-13 1.7E-17  101.2  14.4  200   47-278     9-229 (235)
 51 PRK08694 consensus              99.5 1.3E-11 3.4E-16   93.0  20.8  223   44-282   197-457 (468)
 52 PRK06749 replicative DNA helic  99.5 7.1E-12 1.8E-16   94.7  19.4  217   44-275   165-420 (428)
 53 PRK06904 replicative DNA helic  99.5 2.8E-11 7.2E-16   90.9  20.9  223   45-282   201-462 (472)
 54 PRK08506 replicative DNA helic  99.5 5.9E-11 1.5E-15   88.9  20.6  220   45-279   173-449 (473)
 55 PRK06321 replicative DNA helic  99.5 2.6E-11 6.5E-16   91.1  18.2  223   45-281   206-464 (472)
 56 PRK07773 replicative DNA helic  99.3 6.2E-10 1.6E-14   82.4  17.4  149   44-204   182-363 (868)
 57 COG0305 DnaB Replicative DNA h  99.3 4.2E-09 1.1E-13   77.1  19.9  236   12-279   156-430 (435)
 58 cd01125 repA Hexameric Replica  99.1 1.9E-09 4.8E-14   79.3  13.2  188   67-265     1-225 (239)
 59 PRK05973 replicative DNA helic  98.9 5.1E-08 1.3E-12   70.3  11.1  167   12-203    21-192 (237)
 60 smart00382 AAA ATPases associa  98.7 4.2E-07 1.1E-11   64.5  12.1  145   66-234     1-145 (148)
 61 TIGR02655 circ_KaiC circadian   98.6   1E-07 2.7E-12   68.3   6.6  143   47-202     2-165 (484)
 62 KOG2859 consensus               98.4 4.8E-06 1.2E-10   57.8  10.9  135   66-203    37-209 (293)
 63 COG4544 Uncharacterized conser  98.3   2E-06 5.1E-11   60.2   7.2  191   44-272    31-226 (260)
 64 PRK12726 flagellar biosynthesi  98.3 2.3E-05 5.8E-10   53.5  12.0   95   57-158   189-298 (407)
 65 COG3598 RepA RecA-family ATPas  98.3 2.9E-05 7.4E-10   52.9  12.1  130   62-203    84-241 (402)
 66 KOG0733 consensus               98.2 1.7E-05 4.3E-10   54.4  10.2   28   63-90    219-246 (802)
 67 cd00544 CobU Adenosylcobinamid  98.2 8.4E-06 2.1E-10   56.3   7.8  122   69-204     1-127 (169)
 68 CHL00059 atpA ATP synthase CF1  98.2 1.5E-05 3.8E-10   54.7   9.0  110   45-158   144-268 (501)
 69 cd03115 SRP The signal recogni  98.2 3.6E-05 9.3E-10   52.2  10.6   85   68-158     1-95  (173)
 70 PRK06731 flhF flagellar biosyn  98.1 7.7E-05   2E-09   50.2  11.7   85   68-158    76-167 (270)
 71 cd01132 F1_ATPase_alpha F1 ATP  98.1 1.2E-05 3.2E-10   55.2   7.6  113   43-158    48-174 (274)
 72 PRK09281 F0F1 ATP synthase sub  98.1 5.5E-05 1.4E-09   51.1  10.7  112   44-158   142-267 (502)
 73 cd00009 AAA The AAA+ (ATPases   98.1 5.2E-05 1.3E-09   51.3   9.7   81   65-158    17-97  (151)
 74 PRK05800 cobU adenosylcobinami  98.1 2.8E-05 7.1E-10   53.0   8.1  120   67-203     1-126 (170)
 75 TIGR03324 alt_F1F0_F1_al alter  98.1 5.5E-05 1.4E-09   51.1   9.6  111   45-158   143-267 (497)
 76 PRK03992 proteasome-activating  98.0 2.3E-05 5.9E-10   53.5   7.4  116   63-201   162-279 (390)
 77 COG2087 CobU Adenosyl cobinami  98.0 2.6E-05 6.7E-10   53.1   7.6  126   68-204     1-131 (175)
 78 cd03216 ABC_Carb_Monos_I This   98.0 0.00024   6E-09   47.1  12.5  118   63-205    22-143 (163)
 79 TIGR02655 circ_KaiC circadian   98.0 0.00017 4.4E-09   48.0  11.3  148   47-208   244-403 (484)
 80 pfam02283 CobU Cobinamide kina  98.0 2.6E-05 6.7E-10   53.1   7.1  119   70-204     1-124 (166)
 81 cd01133 F1-ATPase_beta F1 ATP   98.0 4.1E-05   1E-09   51.9   8.1  111   45-158    50-176 (274)
 82 pfam01695 IstB IstB-like ATP b  98.0 9.1E-05 2.3E-09   49.7   9.8  131   54-217    34-164 (178)
 83 PRK06315 type III secretion sy  98.0 6.4E-05 1.6E-09   50.7   8.8  123   43-168   143-279 (442)
 84 pfam00006 ATP-synt_ab ATP synt  97.9 5.6E-05 1.4E-09   51.1   8.0  105   50-158     1-119 (213)
 85 pfam00448 SRP54 SRP54-type pro  97.9 0.00023 5.8E-09   47.2  10.9   86   68-156     2-94  (196)
 86 PRK06793 fliI flagellum-specif  97.9 0.00014 3.6E-09   48.5   9.7  112   43-158   135-259 (432)
 87 PRK12377 putative replication   97.9 8.4E-05 2.1E-09   49.9   8.3  117   67-214   101-217 (248)
 88 PRK13343 F0F1 ATP synthase sub  97.9   6E-05 1.5E-09   50.9   7.2  143   45-190   143-305 (502)
 89 TIGR02928 TIGR02928 orc1/cdc6   97.9 0.00022 5.7E-09   47.3   9.8  138   48-201    26-185 (383)
 90 cd03214 ABC_Iron-Siderophores_  97.9  0.0002 5.1E-09   47.5   9.5  124   63-205    21-159 (180)
 91 PRK12597 F0F1 ATP synthase sub  97.9  0.0002   5E-09   47.6   9.5  122   44-168   121-259 (459)
 92 PRK08181 transposase; Validate  97.8   9E-05 2.3E-09   49.8   7.6  122   62-217   101-223 (269)
 93 PRK06526 transposase; Provisio  97.8 0.00014 3.5E-09   48.6   8.2  131   55-218    86-216 (254)
 94 TIGR03498 FliI_clade3 flagella  97.8 0.00039   1E-08   45.7  10.4  111   44-158   120-243 (418)
 95 PRK07960 fliI flagellum-specif  97.8 0.00011 2.7E-09   49.3   7.4  121   44-168   155-289 (455)
 96 cd01136 ATPase_flagellum-secre  97.8 0.00012 2.9E-09   49.1   7.4  110   44-158    49-172 (326)
 97 PRK00771 signal recognition pa  97.8 0.00064 1.6E-08   44.4  11.1  100   54-158    82-190 (433)
 98 PRK10867 signal recognition pa  97.8 0.00053 1.3E-08   44.9  10.5   91   68-159   101-197 (453)
 99 CHL00060 atpB ATP synthase CF1  97.8 0.00054 1.4E-08   44.8  10.6  140   45-187   136-304 (480)
100 PRK11022 dppD dipeptide transp  97.8 0.00049 1.3E-08   45.1  10.2   30   63-92     29-58  (327)
101 PRK11308 dppF dipeptide transp  97.8 0.00067 1.7E-08   44.2  10.9   42   63-105    37-78  (327)
102 PRK07594 type III secretion sy  97.8 0.00015 3.9E-09   48.3   7.6  110   44-158   135-258 (433)
103 PRK08927 fliI flagellum-specif  97.8 0.00024 6.2E-09   47.0   8.6  111   44-158   138-261 (441)
104 TIGR03305 alt_F1F0_F1_bet alte  97.7 0.00081 2.1E-08   43.7  11.2  142   44-188   118-281 (449)
105 cd03213 ABCG_EPDR ABCG transpo  97.7 0.00032 8.3E-09   46.2   9.1   90   62-154    30-138 (194)
106 cd03238 ABC_UvrA The excision   97.7  0.0004   1E-08   45.7   9.6  142   62-246    16-173 (176)
107 PRK08149 ATP synthase SpaL; Va  97.7 0.00016 4.1E-09   48.1   7.6  111   44-158   130-253 (427)
108 PRK04195 replication factor C   97.7 0.00079   2E-08   43.8  11.1   38   63-103    36-73  (403)
109 PRK06002 fliI flagellum-specif  97.7 0.00024 6.1E-09   47.0   8.4  111   44-158   145-267 (450)
110 TIGR03499 FlhF flagellar biosy  97.7 0.00029 7.3E-09   46.6   8.7   82   65-155   192-282 (282)
111 PRK09183 transposase/IS protei  97.7 0.00016 4.1E-09   48.2   7.4  126   61-218    95-221 (258)
112 COG1124 DppF ABC-type dipeptid  97.7  0.0011 2.8E-08   42.9  11.6  122   63-203    29-201 (252)
113 PRK09841 cryptic autophosphory  97.7  0.0037 9.4E-08   39.6  14.2  141   66-211   530-711 (726)
114 PRK09280 F0F1 ATP synthase sub  97.7 0.00042 1.1E-08   45.5   9.3  141   44-187   125-287 (466)
115 PRK07721 fliI flagellum-specif  97.7  0.0002   5E-09   47.6   7.5  112   43-158   135-259 (435)
116 PRK07952 DNA replication prote  97.7 0.00015 3.8E-09   48.3   6.7  135   68-233    98-237 (242)
117 PRK10416 cell division protein  97.7  0.0031   8E-08   40.0  13.4   91   68-160   296-392 (499)
118 PRK05922 type III secretion sy  97.7 0.00017 4.3E-09   48.0   6.9  111   43-158   136-260 (434)
119 cd03268 ABC_BcrA_bacitracin_re  97.7 0.00054 1.4E-08   44.8   9.5   72   63-136    22-95  (208)
120 PRK10419 nikE nickel transport  97.7 0.00088 2.2E-08   43.5  10.5   27   64-90     35-61  (266)
121 cd03229 ABC_Class3 This class   97.7 0.00037 9.6E-09   45.8   8.6  119   63-203    22-160 (178)
122 PRK13632 cbiO cobalt transport  97.7  0.0011 2.7E-08   43.0  10.8   55   62-117    31-88  (273)
123 KOG0730 consensus               97.7 0.00016 4.2E-09   48.1   6.6  111   62-199   213-325 (693)
124 pfam07015 VirC1 VirC1 protein.  97.7  0.0007 1.8E-08   44.1   9.8   89   69-158     4-96  (231)
125 TIGR03497 FliI_clade2 flagella  97.7 0.00029 7.4E-09   46.5   7.8  122   43-168   116-251 (413)
126 KOG0736 consensus               97.7  0.0011 2.9E-08   42.8  10.9  150   14-193   644-808 (953)
127 cd03230 ABC_DR_subfamily_A Thi  97.6 0.00058 1.5E-08   44.6   9.1  123   63-206    22-157 (173)
128 TIGR01241 FtsH_fam ATP-depende  97.6 3.9E-05 9.9E-10   52.0   3.1   72   39-115    69-172 (505)
129 PRK13648 cbiO cobalt transport  97.6  0.0011 2.9E-08   42.8  10.5   54   63-117    31-87  (269)
130 PRK07165 F0F1 ATP synthase sub  97.6  0.0037 9.4E-08   39.6  13.1  134   46-184   125-282 (507)
131 PRK07196 fliI flagellum-specif  97.6 0.00021 5.4E-09   47.4   6.8  112   43-158   134-258 (434)
132 PRK10418 nikD nickel transport  97.6  0.0016   4E-08   41.9  11.2   30   63-92     25-54  (254)
133 PRK09099 type III secretion sy  97.6 0.00024 6.1E-09   47.1   7.0  111   44-158   143-266 (441)
134 cd03232 ABC_PDR_domain2 The pl  97.6 0.00061 1.6E-08   44.5   9.1   88   62-153    28-134 (192)
135 PRK08116 hypothetical protein;  97.6 0.00088 2.2E-08   43.5   9.9  117   67-212   108-224 (262)
136 PRK05703 flhF flagellar biosyn  97.6 0.00066 1.7E-08   44.3   9.2   86   65-160   208-302 (412)
137 PRK08084 DNA replication initi  97.6 0.00021 5.3E-09   47.4   6.6   89   62-151    41-137 (235)
138 PRK08472 fliI flagellum-specif  97.6  0.0006 1.5E-08   44.5   8.9  111   44-158   138-260 (435)
139 TIGR02545 ATP_syn_fliI flagell  97.6 0.00069 1.8E-08   44.1   9.2  190   40-262   134-350 (439)
140 PRK13849 putative crown gall t  97.6  0.0009 2.3E-08   43.4   9.8   90   69-159     4-97  (231)
141 KOG0780 consensus               97.6  0.0013 3.3E-08   42.4  10.5   91   66-158   100-196 (483)
142 COG0541 Ffh Signal recognition  97.6  0.0015 3.8E-08   42.0  10.7  104   53-158    80-195 (451)
143 PRK06835 DNA replication prote  97.6 0.00085 2.2E-08   43.6   9.4  115   68-212   184-298 (330)
144 COG1618 Predicted nucleotide k  97.6 0.00069 1.8E-08   44.1   8.9  112   70-205     8-141 (179)
145 cd03228 ABCC_MRP_Like The MRP   97.6  0.0018 4.6E-08   41.5  11.0   90   63-156    24-125 (171)
146 PRK13635 cbiO cobalt transport  97.6  0.0017 4.2E-08   41.7  10.7   54   63-117    29-85  (279)
147 PRK13636 cbiO cobalt transport  97.6  0.0026 6.6E-08   40.5  11.6   51   51-104    18-68  (285)
148 PRK06936 type III secretion sy  97.6 0.00024   6E-09   47.1   6.2  121   44-168   142-276 (439)
149 PRK10584 putative ABC transpor  97.6  0.0015 3.9E-08   41.9  10.3   47   63-110    32-80  (228)
150 COG1157 FliI Flagellar biosynt  97.5 0.00058 1.5E-08   44.7   8.1  124   42-169   141-278 (441)
151 TIGR02546 III_secr_ATP type II  97.5  0.0011 2.8E-08   42.9   9.5  113   39-155   127-253 (430)
152 COG1131 CcmA ABC-type multidru  97.5  0.0015 3.7E-08   42.1  10.1   78   62-140    26-105 (293)
153 cd03255 ABC_MJ0796_Lo1CDE_FtsE  97.5  0.0022 5.5E-08   41.0  10.9   41   64-105    27-67  (218)
154 TIGR00959 ffh signal recogniti  97.5 0.00036 9.2E-09   45.9   6.9  114   62-199    99-228 (439)
155 cd03265 ABC_DrrA DrrA is the A  97.5  0.0015 3.8E-08   42.0  10.0   70   63-134    22-94  (220)
156 TIGR03496 FliI_clade1 flagella  97.5 0.00029 7.3E-09   46.6   6.3  113   42-158   115-240 (411)
157 PRK13652 cbiO cobalt transport  97.5  0.0016 4.2E-08   41.8  10.2   55   62-117    25-82  (277)
158 PRK12422 chromosomal replicati  97.5 0.00087 2.2E-08   43.5   8.8   89   62-153   137-244 (455)
159 COG1484 DnaC DNA replication p  97.5  0.0011 2.8E-08   42.8   9.3  137   63-231   101-238 (254)
160 PRK10575 iron-hydroxamate tran  97.5  0.0024 6.2E-08   40.7  11.1   55   63-119    33-91  (265)
161 PRK13637 cbiO cobalt transport  97.5  0.0026 6.7E-08   40.5  11.2   54   63-117    29-87  (287)
162 cd01135 V_A-ATPase_B V/A-type   97.5 0.00077   2E-08   43.8   8.5  112   44-158    49-179 (276)
163 PRK10733 hflB ATP-dependent me  97.5 0.00077   2E-08   43.8   8.4   32   58-92    179-210 (644)
164 cd03222 ABC_RNaseL_inhibitor T  97.5  0.0014 3.5E-08   42.3   9.7  110   63-204    21-132 (177)
165 CHL00176 ftsH cell division pr  97.5  0.0005 1.3E-08   45.0   7.4   31   59-92    205-235 (631)
166 cd03237 ABC_RNaseL_inhibitor_d  97.5  0.0019 4.8E-08   41.4  10.3   42   61-104    19-61  (246)
167 PRK05688 fliI flagellum-specif  97.5  0.0003 7.7E-09   46.4   6.3  111   44-158   148-271 (451)
168 cd03246 ABCC_Protease_Secretio  97.5  0.0014 3.6E-08   42.2   9.7   90   62-155    23-124 (173)
169 PRK08972 fliI flagellum-specif  97.5 0.00054 1.4E-08   44.8   7.5  121   44-168   140-274 (440)
170 PRK13650 cbiO cobalt transport  97.5  0.0054 1.4E-07   38.5  12.5   54   63-117    26-82  (276)
171 cd03247 ABCC_cytochrome_bd The  97.5  0.0011 2.8E-08   42.9   9.0   90   63-155    24-126 (178)
172 TIGR01526 nadR_NMN_Atrans nico  97.5  0.0012 3.2E-08   42.5   9.2   23   68-90    176-198 (346)
173 PRK11701 phnK phosphonates tra  97.5  0.0021 5.3E-08   41.1  10.3   39   63-101    28-66  (258)
174 PRK06893 DNA replication initi  97.5  0.0005 1.3E-08   45.0   7.1   88   62-151    35-130 (229)
175 cd03267 ABC_NatA_like Similar   97.5  0.0023   6E-08   40.8  10.4   53   63-117    43-98  (236)
176 PRK11519 tyrosine kinase; Prov  97.5  0.0095 2.4E-07   37.0  15.5  149   54-210   516-705 (720)
177 pfam01637 Arch_ATPase Archaeal  97.5  0.0037 9.4E-08   39.5  11.3  123   67-201    20-153 (223)
178 cd03234 ABCG_White The White s  97.5   0.002   5E-08   41.3   9.8   71   62-134    28-102 (226)
179 PRK10253 iron-enterobactin tra  97.5  0.0023 5.9E-08   40.8  10.2   54   63-118    29-86  (265)
180 PRK11629 lolD lipoprotein tran  97.5  0.0036 9.1E-08   39.6  11.2   41   63-104    31-71  (233)
181 PRK08903 hypothetical protein;  97.5 0.00085 2.2E-08   43.6   7.9   90   63-152    38-129 (227)
182 cd00267 ABC_ATPase ABC (ATP-bi  97.5  0.0031 7.9E-08   40.0  10.8  117   63-204    21-140 (157)
183 COG1474 CDC6 Cdc6-related prot  97.4  0.0014 3.7E-08   42.1   9.0   99   52-161    30-139 (366)
184 COG0056 AtpA F0F1-type ATP syn  97.4  0.0051 1.3E-07   38.7  11.8  162   46-210   144-329 (504)
185 PRK05642 DNA replication initi  97.4  0.0011 2.8E-08   42.8   8.4   89   61-151    40-136 (234)
186 PRK10261 glutathione transport  97.4  0.0035 8.8E-08   39.7  10.9   34   63-96     38-71  (623)
187 COG0378 HypB Ni2+-binding GTPa  97.4  0.0016   4E-08   41.9   9.1   89   68-160    14-111 (202)
188 PRK12723 flagellar biosynthesi  97.4  0.0015 3.7E-08   42.1   8.9   83   66-157   173-266 (388)
189 cd01128 rho_factor Transcripti  97.4  0.0006 1.5E-08   44.6   6.9  102   51-158     3-116 (249)
190 PRK06995 flhF flagellar biosyn  97.4  0.0015 3.8E-08   42.1   8.9   87   64-160   173-268 (404)
191 PRK11144 modC molybdate transp  97.4  0.0028 7.2E-08   40.3  10.3   40   51-94     11-50  (352)
192 cd03266 ABC_NatA_sodium_export  97.4  0.0018 4.5E-08   41.6   9.2   71   63-135    27-100 (218)
193 COG0552 FtsY Signal recognitio  97.4  0.0054 1.4E-07   38.5  11.7  110   67-195   139-255 (340)
194 pfam00004 AAA ATPase family as  97.4 0.00052 1.3E-08   44.9   6.4  108   70-202     1-110 (131)
195 TIGR03410 urea_trans_UrtE urea  97.4  0.0062 1.6E-07   38.1  11.9   71   63-134    22-96  (230)
196 COG0464 SpoVK ATPases of the A  97.4  0.0023   6E-08   40.8   9.7  114   63-201   272-385 (494)
197 PRK13633 cobalt transporter AT  97.4  0.0059 1.5E-07   38.2  11.8   45   63-108    33-77  (281)
198 PRK11831 putative ABC transpor  97.4  0.0037 9.5E-08   39.5  10.7   42   63-105    30-71  (269)
199 PRK13646 cbiO cobalt transport  97.4  0.0056 1.4E-07   38.4  11.6   38   63-100    29-66  (286)
200 PRK00411 cdc6 cell division co  97.4  0.0032 8.2E-08   39.9  10.4  100   54-160    45-153 (394)
201 PRK10247 putative ABC transpor  97.4  0.0036 9.3E-08   39.6  10.5   53   63-117    29-85  (225)
202 PRK13647 cbiO cobalt transport  97.4  0.0048 1.2E-07   38.8  11.0   56   62-117    26-83  (273)
203 PRK13639 cbiO cobalt transport  97.4  0.0036 9.3E-08   39.6  10.3   55   62-117    23-82  (275)
204 PRK13640 cbiO cobalt transport  97.4  0.0033 8.5E-08   39.8  10.1   56   62-117    29-89  (283)
205 PRK10771 thiQ thiamine transpo  97.4  0.0016 4.2E-08   41.8   8.5   40   64-104    22-61  (233)
206 COG1123 ATPase components of v  97.4  0.0043 1.1E-07   39.1  10.5   39   64-102    32-74  (539)
207 PRK13642 cbiO cobalt transport  97.4  0.0025 6.4E-08   40.6   9.4   41   64-105    30-70  (277)
208 cd03259 ABC_Carb_Solutes_like   97.4   0.002   5E-08   41.3   8.8   40   64-104    23-62  (213)
209 KOG0733 consensus               97.3  0.0026 6.6E-08   40.5   9.4  117   57-201   538-655 (802)
210 TIGR03015 pepcterm_ATPase puta  97.3  0.0017 4.2E-08   41.7   8.4   88   63-157    38-135 (269)
211 cd03256 ABC_PhnC_transporter A  97.3  0.0025 6.4E-08   40.6   9.3   43   63-106    23-65  (241)
212 TIGR01243 CDC48 AAA family ATP  97.3  0.0028 7.2E-08   40.3   9.5  121   48-199   224-347 (980)
213 PRK06820 type III secretion sy  97.3  0.0004   1E-08   45.6   5.0  118   45-167   144-276 (445)
214 cd03300 ABC_PotA_N PotA is an   97.3  0.0025 6.4E-08   40.6   9.1   42   64-106    23-64  (232)
215 PRK09473 oppD oligopeptide tra  97.3  0.0033 8.5E-08   39.8   9.7   42   63-105    38-82  (330)
216 cd03226 ABC_cobalt_CbiO_domain  97.3  0.0023 5.9E-08   40.8   8.8   54   63-117    22-75  (205)
217 PTZ00243 ABC transporter; Prov  97.3  0.0038 9.7E-08   39.5   9.9  122   64-204   683-843 (1560)
218 cd03299 ABC_ModC_like Archeal   97.3  0.0029 7.3E-08   40.3   9.2   42   63-105    21-62  (235)
219 TIGR03375 type_I_sec_LssB type  97.3  0.0065 1.7E-07   38.0  11.0   75   62-138   486-576 (694)
220 PRK10261 glutathione transport  97.3  0.0051 1.3E-07   38.7  10.5   55  132-204   175-229 (623)
221 PRK12724 flagellar biosynthesi  97.3  0.0014 3.4E-08   42.3   7.4   84   62-155   218-309 (432)
222 CHL00195 ycf46 Ycf46; Provisio  97.3  0.0024   6E-08   40.8   8.6  115   62-203   254-370 (491)
223 TIGR01842 type_I_sec_PrtD type  97.3  0.0015 3.7E-08   42.1   7.6   80    7-92    289-380 (556)
224 cd03269 ABC_putative_ATPase Th  97.3  0.0037 9.4E-08   39.5   9.6   52   63-117    22-74  (210)
225 COG1222 RPT1 ATP-dependent 26S  97.3  0.0019 4.8E-08   41.4   8.0  126   51-202   172-299 (406)
226 pfam05625 PAXNEB PAXNEB protei  97.3 0.00065 1.7E-08   44.3   5.6   68   40-115    18-91  (353)
227 COG0444 DppD ABC-type dipeptid  97.3  0.0057 1.4E-07   38.4  10.3   42   63-105    27-73  (316)
228 cd03252 ABCC_Hemolysin The ABC  97.3   0.014 3.5E-07   35.9  12.2   53   63-116    24-79  (237)
229 PRK13651 cobalt transporter AT  97.3  0.0089 2.3E-07   37.1  11.3   38   63-100    29-66  (304)
230 cd03114 ArgK-like The function  97.3  0.0032 8.2E-08   39.9   9.0   93   70-164     2-108 (148)
231 cd03295 ABC_OpuCA_Osmoprotecti  97.3  0.0079   2E-07   37.4  11.0   42   63-105    23-64  (242)
232 PRK08727 hypothetical protein;  97.3  0.0018 4.6E-08   41.5   7.7   87   63-151    38-132 (233)
233 PRK09700 D-allose transporter   97.2  0.0072 1.8E-07   37.7  10.7   54   63-117    27-82  (510)
234 PRK13634 cbiO cobalt transport  97.2  0.0094 2.4E-07   37.0  11.2   38   63-100    16-53  (276)
235 cd03225 ABC_cobalt_CbiO_domain  97.2  0.0091 2.3E-07   37.1  11.1   54   63-117    23-79  (211)
236 cd03250 ABCC_MRP_domain1 Domai  97.2   0.008   2E-07   37.4  10.8   43   63-105    27-75  (204)
237 cd03263 ABC_subfamily_A The AB  97.2  0.0049 1.2E-07   38.8   9.7   72   62-135    23-97  (220)
238 COG4608 AppF ABC-type oligopep  97.2  0.0054 1.4E-07   38.5   9.9  132   63-214    35-187 (268)
239 cd03254 ABCC_Glucan_exporter_l  97.2   0.014 3.7E-07   35.8  12.1   42   62-104    24-65  (229)
240 KOG0744 consensus               97.2  0.0026 6.7E-08   40.5   8.3  136   63-211   173-314 (423)
241 PRK09452 potA putrescine/sperm  97.2  0.0041 1.1E-07   39.2   9.2   42   63-105    39-80  (378)
242 TIGR03420 DnaA_homol_Hda DnaA   97.2  0.0017 4.4E-08   41.6   7.3   85   65-150    36-128 (226)
243 pfam01583 APS_kinase Adenylyls  97.2 0.00098 2.5E-08   43.2   5.9   81   66-154     1-81  (157)
244 PRK13544 consensus              97.2   0.004   1E-07   39.3   9.0   52   63-116    23-76  (208)
245 COG1129 MglA ABC-type sugar tr  97.2   0.011 2.9E-07   36.4  11.3   54   64-118    31-86  (500)
246 cd03215 ABC_Carb_Monos_II This  97.2  0.0058 1.5E-07   38.3   9.8  122   63-204    22-164 (182)
247 PRK13631 cbiO cobalt transport  97.2   0.013 3.2E-07   36.2  11.5   36   63-98     48-83  (320)
248 PRK13649 cbiO cobalt transport  97.2  0.0072 1.8E-07   37.7  10.2   39   62-100    28-66  (280)
249 cd03297 ABC_ModC_molybdenum_tr  97.2  0.0091 2.3E-07   37.1  10.7   37   67-104    23-59  (214)
250 COG1122 CbiO ABC-type cobalt t  97.2  0.0015 3.8E-08   42.1   6.6  138   62-203    25-198 (235)
251 pfam08433 KTI12 Chromatin asso  97.2  0.0021 5.4E-08   41.1   7.4   73   69-155     1-78  (266)
252 PRK11889 flhF flagellar biosyn  97.2  0.0042 1.1E-07   39.2   8.9   83   68-156   242-331 (436)
253 TIGR01026 fliI_yscN ATPase Fli  97.2  0.0012 3.2E-08   42.6   6.2  161   42-228   150-328 (455)
254 PRK13641 cbiO cobalt transport  97.2    0.01 2.6E-07   36.8  10.9   41   62-103    28-68  (286)
255 PRK10070 glycine betaine trans  97.2   0.012 3.1E-07   36.3  11.2   43   63-106    50-92  (400)
256 PRK11248 tauB taurine transpor  97.2  0.0063 1.6E-07   38.1   9.8   40   63-104    23-63  (255)
257 TIGR03574 selen_PSTK L-seryl-t  97.2  0.0015 3.9E-08   42.0   6.5   36   69-104     1-36  (249)
258 TIGR01243 CDC48 AAA family ATP  97.2  0.0052 1.3E-07   38.6   9.2  114   63-200   571-685 (980)
259 cd03293 ABC_NrtD_SsuB_transpor  97.2   0.004   1E-07   39.3   8.6   40   63-103    26-65  (220)
260 TIGR03029 EpsG chain length de  97.1   0.022 5.7E-07   34.6  13.7  137   63-202   100-274 (274)
261 PRK13644 cbiO cobalt transport  97.1   0.018 4.5E-07   35.2  11.8   51   51-104    14-64  (274)
262 pfam05496 RuvB_N Holliday junc  97.1   0.002 5.1E-08   41.2   6.9   82   48-158    33-114 (234)
263 PRK13341 recombination factor   97.1  0.0012   3E-08   42.7   5.7   91   47-142    36-182 (726)
264 cd03224 ABC_TM1139_LivF_branch  97.1  0.0079   2E-07   37.5   9.9   53   63-117    22-77  (222)
265 PRK11247 ssuB aliphatic sulfon  97.1   0.013 3.3E-07   36.1  10.8   35   63-98     34-69  (257)
266 COG3845 ABC-type uncharacteriz  97.1   0.014 3.5E-07   35.9  10.9  233   47-305    13-321 (501)
267 PRK13545 tagH teichoic acids e  97.1   0.019 4.9E-07   35.0  11.5  121   63-202    46-201 (549)
268 PRK10522 multidrug transporter  97.1   0.024 6.1E-07   34.4  12.0   41   63-104   345-385 (547)
269 PRK13645 cbiO cobalt transport  97.1   0.022 5.7E-07   34.6  11.8   39   62-100    32-70  (289)
270 PHA02518 ParA-like protein; Pr  97.1  0.0069 1.8E-07   37.8   9.2   86   69-158     2-89  (211)
271 PRK10895 putative ABC transpor  97.1   0.012 3.1E-07   36.3  10.4   40   63-104    25-65  (241)
272 PRK11264 putative amino-acid A  97.1  0.0098 2.5E-07   36.9   9.9   36   63-99     23-59  (248)
273 PRK11607 potG putrescine trans  97.1  0.0063 1.6E-07   38.1   8.8   42   63-105    41-82  (377)
274 TIGR00064 ftsY signal recognit  97.1  0.0054 1.4E-07   38.5   8.5   98   61-162    78-182 (284)
275 TIGR02640 gas_vesic_GvpN gas v  97.1 0.00084 2.1E-08   43.6   4.4   42   64-108    18-59  (265)
276 cd03233 ABC_PDR_domain1 The pl  97.1  0.0055 1.4E-07   38.5   8.5   31   62-93     28-58  (202)
277 PRK10908 cell division protein  97.1  0.0092 2.3E-07   37.0   9.7   41   63-104    24-64  (222)
278 PRK09493 glnQ glutamine ABC tr  97.0   0.014 3.7E-07   35.8  10.6   41   64-105    24-64  (240)
279 PRK03846 adenylylsulfate kinas  97.0  0.0017 4.3E-08   41.7   5.8   84   66-157    23-106 (198)
280 PRK11174 cysteine/glutathione   97.0   0.022 5.7E-07   34.6  11.5   71   63-135   372-457 (588)
281 KOG0735 consensus               97.0  0.0099 2.5E-07   36.8   9.7  149   62-231   427-590 (952)
282 cd03218 ABC_YhbG The ABC trans  97.0   0.012   3E-07   36.3  10.1   71   63-134    22-96  (232)
283 cd03294 ABC_Pro_Gly_Bertaine T  97.0    0.02 5.1E-07   34.9  11.2   42   64-106    47-88  (269)
284 cd01134 V_A-ATPase_A V/A-type   97.0   0.011 2.8E-07   36.6   9.8  118   45-167   138-277 (369)
285 PRK00149 dnaA chromosomal repl  97.0   0.006 1.5E-07   38.2   8.5   89   62-153   141-250 (447)
286 KOG0735 consensus               97.0   0.016 4.1E-07   35.5  10.7  122   48-199   685-808 (952)
287 cd03261 ABC_Org_Solvent_Resist  97.0   0.015 3.9E-07   35.7  10.5   40   64-104    23-62  (235)
288 cd00550 ArsA_ATPase Oxyanion-t  97.0   0.012 2.9E-07   36.4   9.9   39   68-106     1-39  (254)
289 PRK13542 consensus              97.0   0.014 3.5E-07   35.9  10.3   54   62-116    39-94  (224)
290 TIGR03522 GldA_ABC_ATP gliding  97.0   0.022 5.7E-07   34.6  11.3   71   63-135    24-97  (301)
291 TIGR03258 PhnT 2-aminoethylpho  97.0  0.0074 1.9E-07   37.7   8.7   40   64-104    28-69  (362)
292 PRK13695 putative NTPase; Prov  97.0  0.0055 1.4E-07   38.4   8.1   28   70-97      6-33  (174)
293 PRK11650 ugpC glycerol-3-phosp  97.0    0.01 2.6E-07   36.7   9.5   41   63-104    26-66  (358)
294 cd03292 ABC_FtsE_transporter F  97.0  0.0098 2.5E-07   36.9   9.4   43   62-105    22-64  (214)
295 pfam02492 cobW CobW/HypB/UreG,  97.0  0.0088 2.2E-07   37.2   9.1   90   69-160     2-99  (174)
296 cd03298 ABC_ThiQ_thiamine_tran  97.0  0.0063 1.6E-07   38.1   8.3   40   64-104    21-60  (211)
297 PRK11300 livG leucine/isoleuci  97.0   0.021 5.4E-07   34.7  11.0   53   63-117    27-82  (255)
298 cd03296 ABC_CysA_sulfate_impor  97.0  0.0082 2.1E-07   37.4   8.8   42   63-105    24-65  (239)
299 PRK13546 teichoic acids export  97.0   0.017 4.4E-07   35.3  10.4   34   63-97     46-80  (264)
300 PRK13537 lipooligosaccharide t  97.0   0.012 3.1E-07   36.2   9.7   37   63-100    27-64  (304)
301 PRK13541 cytochrome c biogenes  97.0   0.012   3E-07   36.3   9.6   38   62-100    21-59  (195)
302 pfam03266 DUF265 Protein of un  97.0   0.018 4.5E-07   35.2  10.4  113   71-205     3-136 (168)
303 COG4555 NatA ABC-type Na+ tran  96.9   0.014 3.6E-07   35.8   9.9   71   63-135    24-97  (245)
304 PRK13538 cytochrome c biogenes  96.9   0.017 4.5E-07   35.3  10.3   37   63-100    23-60  (204)
305 TIGR03269 met_CoM_red_A2 methy  96.9   0.026 6.6E-07   34.2  11.2   28   63-91     22-49  (520)
306 PRK10851 sulfate/thiosulfate t  96.9  0.0061 1.5E-07   38.2   7.9   41   63-104    24-64  (352)
307 TIGR03265 PhnT2 putative 2-ami  96.9  0.0085 2.2E-07   37.2   8.6   42   63-105    26-67  (353)
308 PRK11614 livF leucine/isoleuci  96.9   0.016   4E-07   35.6  10.0   42   63-105    27-68  (237)
309 cd02028 UMPK_like Uridine mono  96.9  0.0025 6.3E-08   40.7   5.8   81   69-153     1-83  (179)
310 KOG0054 consensus               96.9   0.017 4.3E-07   35.4  10.1  124   63-204   543-704 (1381)
311 PRK13536 nodulation factor exp  96.9   0.015 3.7E-07   35.8   9.7   40   63-104    29-69  (306)
312 cd03301 ABC_MalK_N The N-termi  96.9   0.011 2.7E-07   36.6   9.0   42   63-105    22-63  (213)
313 TIGR01425 SRP54_euk signal rec  96.9  0.0013 3.4E-08   42.4   4.3  135    6-155    68-213 (453)
314 cd03217 ABC_FeS_Assembly ABC-t  96.9   0.012   3E-07   36.3   9.2  121   63-203    22-163 (200)
315 TIGR03269 met_CoM_red_A2 methy  96.9   0.032 8.1E-07   33.6  11.3   55  132-204   175-229 (520)
316 PRK13768 GTPase; Provisional    96.9  0.0043 1.1E-07   39.1   6.9   36   69-104     4-39  (253)
317 COG1123 ATPase components of v  96.9   0.019 4.7E-07   35.1  10.1   32  183-214   194-232 (539)
318 cd02038 FleN-like FleN is a me  96.9   0.014 3.6E-07   35.8   9.5   39   69-107     2-40  (139)
319 PRK08939 primosomal protein Dn  96.9  0.0071 1.8E-07   37.8   7.8   78   62-158   154-231 (306)
320 PRK05541 adenylylsulfate kinas  96.9  0.0017 4.2E-08   41.7   4.6   81   65-157     5-88  (176)
321 cd03264 ABC_drug_resistance_li  96.9   0.019 4.9E-07   35.0  10.0   71   63-135    22-94  (211)
322 cd03258 ABC_MetN_methionine_tr  96.9   0.021 5.3E-07   34.8  10.1   40   63-104    27-67  (233)
323 PRK08233 hypothetical protein;  96.9   0.011 2.8E-07   36.6   8.7   83   68-158     4-90  (182)
324 cd02027 APSK Adenosine 5'-phos  96.8  0.0031 7.8E-08   40.1   5.7   78   69-154     1-78  (149)
325 pfam00308 Bac_DnaA Bacterial d  96.8   0.006 1.5E-07   38.2   7.2   86   62-150    30-135 (219)
326 pfam09140 MipZ ATPase MipZ. Mi  96.8  0.0054 1.4E-07   38.5   6.9   80   77-158    11-111 (261)
327 TIGR02769 nickel_nikE nickel i  96.8   0.015 3.9E-07   35.7   9.2  119   65-202    36-210 (267)
328 pfam02374 ArsA_ATPase Anion-tr  96.8  0.0093 2.4E-07   37.0   8.1   88   68-155     2-136 (304)
329 COG0470 HolB ATPase involved i  96.8   0.012   3E-07   36.4   8.6   89   69-159    26-123 (325)
330 PRK00349 uvrA excinuclease ABC  96.8  0.0011 2.8E-08   42.9   3.3   32   63-94     22-54  (944)
331 TIGR00073 hypB hydrogenase acc  96.8  0.0046 1.2E-07   38.9   6.5   89   71-164    38-137 (225)
332 KOG0731 consensus               96.8   0.014 3.6E-07   35.8   9.0   31   59-92    339-369 (774)
333 cd03221 ABCF_EF-3 ABCF_EF-3  E  96.8    0.03 7.6E-07   33.8  10.6   74   63-155    22-98  (144)
334 PRK09544 znuC high-affinity zi  96.8   0.017 4.3E-07   35.4   9.3   35   63-97     26-60  (251)
335 cd03231 ABC_CcmA_heme_exporter  96.8   0.025 6.3E-07   34.3  10.1   37   63-100    22-59  (201)
336 TIGR03415 ABC_choXWV_ATP choli  96.8   0.022 5.6E-07   34.6   9.8   42   64-106    47-89  (382)
337 pfam03029 ATP_bind_1 Conserved  96.8  0.0063 1.6E-07   38.1   7.0   33   72-104     1-33  (234)
338 PRK10938 putative molybdenum t  96.8   0.018 4.7E-07   35.2   9.3   34   63-96     25-58  (490)
339 PRK12727 flagellar biosynthesi  96.8  0.0043 1.1E-07   39.1   6.0   88   63-160   344-440 (557)
340 PRK11432 fbpC ferric transport  96.8    0.01 2.5E-07   36.8   7.9   43   63-106    28-70  (351)
341 PRK13549 xylose transporter AT  96.8   0.043 1.1E-06   32.8  11.2   31   63-94     27-57  (513)
342 COG1136 SalX ABC-type antimicr  96.8  0.0023 5.8E-08   40.9   4.5   40   63-103    27-66  (226)
343 cd02035 ArsA ArsA ATPase funct  96.7    0.01 2.7E-07   36.7   7.9   36   69-104     1-36  (217)
344 COG4172 ABC-type uncharacteriz  96.7   0.042 1.1E-06   32.9  11.0   43   64-107    33-80  (534)
345 PRK13830 conjugal transfer pro  96.7  0.0031 7.8E-08   40.1   5.1   65   48-116   440-505 (818)
346 COG1120 FepC ABC-type cobalami  96.7  0.0021 5.3E-08   41.1   4.2   55   63-118    24-81  (258)
347 cd02040 NifH NifH gene encodes  96.7   0.023 5.8E-07   34.6   9.5   37   68-104     2-38  (270)
348 PRK11000 maltose/maltodextrin   96.7    0.01 2.7E-07   36.7   7.7   42   63-105    25-66  (369)
349 pfam01656 CbiA CobQ/CobB/MinD/  96.7   0.047 1.2E-06   32.5  11.1   36   72-107     4-39  (212)
350 PRK02118 V-type ATP synthase s  96.7   0.017 4.2E-07   35.4   8.7  136   45-186   121-278 (432)
351 PRK10790 putative multidrug tr  96.7   0.033 8.4E-07   33.5  10.2   73   62-135   362-448 (593)
352 PRK13539 cytochrome c biogenes  96.7   0.041   1E-06   32.9  10.7   39   62-101    23-62  (206)
353 PRK11153 metN DL-methionine tr  96.7   0.029 7.4E-07   33.9   9.9   42   63-105    27-68  (343)
354 pfam00931 NB-ARC NB-ARC domain  96.7   0.027 6.8E-07   34.1   9.6   85   67-155    19-110 (285)
355 PRK10463 hydrogenase nickel in  96.7   0.013 3.2E-07   36.2   8.0   88   70-164   107-203 (290)
356 COG3451 VirB4 Type IV secretor  96.7  0.0038 9.6E-08   39.5   5.2   47   69-116   438-485 (796)
357 COG1435 Tdk Thymidine kinase [  96.7   0.054 1.4E-06   32.2  11.5  160   65-231     2-187 (201)
358 KOG0739 consensus               96.7   0.021 5.3E-07   34.8   8.9  227   61-318   160-411 (439)
359 PRK11147 ABC transporter ATPas  96.7   0.027   7E-07   34.0   9.6   26   64-90     26-51  (632)
360 PRK00889 adenylylsulfate kinas  96.7  0.0046 1.2E-07   39.0   5.5   84   65-156     2-85  (175)
361 PRK13898 type IV secretion sys  96.6  0.0055 1.4E-07   38.4   5.9   48   67-116   447-494 (800)
362 PRK13548 hmuV hemin importer A  96.6   0.012 3.1E-07   36.3   7.6   53   63-117    24-80  (257)
363 TIGR00929 VirB4_CagE type IV s  96.6  0.0035   9E-08   39.7   4.8   48   66-115   516-567 (931)
364 PRK06921 hypothetical protein;  96.6    0.05 1.3E-06   32.4  10.6  105   69-207   118-228 (265)
365 TIGR01242 26Sp45 26S proteasom  96.6   0.014 3.6E-07   35.9   7.8  128   48-203   140-271 (364)
366 cd03220 ABC_KpsT_Wzt ABC_KpsT_  96.6   0.041 1.1E-06   32.9  10.2   31   63-94     44-74  (224)
367 PHA00520 packaging NTPase P4    96.6   0.021 5.4E-07   34.8   8.6  124   61-203   108-234 (326)
368 KOG0734 consensus               96.6  0.0075 1.9E-07   37.6   6.3  101   58-163   331-479 (752)
369 COG3172 NadR Predicted ATPase/  96.6   0.021 5.5E-07   34.7   8.6   24   68-91      9-32  (187)
370 PRK13543 cytochrome c biogenes  96.6   0.023 5.9E-07   34.5   8.7   40   63-104    33-73  (214)
371 PRK08099 nicotinamide-nucleoti  96.6   0.019 4.7E-07   35.1   8.2   23   70-92    234-256 (411)
372 KOG3949 consensus               96.6  0.0083 2.1E-07   37.3   6.4   61   38-99     19-80  (360)
373 TIGR00972 3a0107s01c2 phosphat  96.6  0.0013 3.4E-08   42.3   2.3   54   63-117    23-86  (248)
374 PRK10535 macrolide transporter  96.5   0.056 1.4E-06   32.1  10.5   30   63-93     30-59  (648)
375 TIGR00665 DnaB replicative DNA  96.5  0.0085 2.2E-07   37.3   6.3  239   13-273   173-459 (465)
376 pfam00142 Fer4_NifH 4Fe-4S iro  96.5   0.036 9.2E-07   33.3   9.4   38   68-105     1-38  (269)
377 COG1419 FlhF Flagellar GTP-bin  96.5   0.029 7.5E-07   33.8   8.9  102   45-156   177-292 (407)
378 KOG0727 consensus               96.5   0.025 6.3E-07   34.3   8.4  113   63-201   185-302 (408)
379 COG1121 ZnuC ABC-type Mn/Zn tr  96.5    0.05 1.3E-06   32.4   9.9   28   62-89     25-52  (254)
380 PRK13342 recombination factor   96.5  0.0043 1.1E-07   39.1   4.5   59   47-110    21-107 (417)
381 PRK10818 cell division inhibit  96.5   0.041   1E-06   32.9   9.5   38   67-104     2-40  (270)
382 cd02117 NifH_like This family   96.5   0.041   1E-06   32.9   9.5   37   68-104     1-37  (212)
383 TIGR01846 type_I_sec_HlyB type  96.5  0.0074 1.9E-07   37.6   5.7   74   63-137   487-575 (703)
384 COG0003 ArsA Predicted ATPase   96.5   0.054 1.4E-06   32.2  10.0  112   67-188     2-158 (322)
385 KOG3928 consensus               96.5   0.024 6.1E-07   34.4   8.2   69   60-133   173-245 (461)
386 PRK04196 V-type ATP synthase s  96.5   0.029 7.3E-07   33.9   8.6  139   44-186   123-287 (460)
387 COG2256 MGS1 ATPase related to  96.5  0.0072 1.8E-07   37.7   5.5   82   55-139    39-174 (436)
388 PRK12608 transcription termina  96.5   0.026 6.7E-07   34.2   8.3   88   66-158   131-232 (379)
389 TIGR03608 L_ocin_972_ABC putat  96.4  0.0049 1.3E-07   38.8   4.5   40   64-104    21-60  (206)
390 cd02042 ParA ParA and ParB of   96.4  0.0077   2E-07   37.5   5.4   31   76-106     9-39  (104)
391 COG0593 DnaA ATPase involved i  96.4   0.023 5.8E-07   34.5   7.8  102   47-152    89-214 (408)
392 PRK10982 galactose/methyl gala  96.4   0.065 1.7E-06   31.7  10.1   41   63-104    20-60  (491)
393 TIGR00635 ruvB Holliday juncti  96.4  0.0037 9.5E-08   39.5   3.7   44   70-114    33-100 (305)
394 PRK05580 primosome assembly pr  96.4   0.082 2.1E-06   31.0  10.6   60   53-115   175-234 (699)
395 PRK07414 cob(I)yrinic acid a,c  96.4   0.067 1.7E-06   31.6  10.1   95   62-157    17-127 (178)
396 cd03290 ABCC_SUR1_N The SUR do  96.4  0.0048 1.2E-07   38.8   4.2   38   63-100    23-60  (218)
397 PRK11160 cysteine/glutathione   96.4   0.021 5.3E-07   34.8   7.4   74   63-137   363-451 (575)
398 COG0324 MiaA tRNA delta(2)-iso  96.4   0.014 3.7E-07   35.8   6.6   80   68-150     4-98  (308)
399 pfam03308 ArgK ArgK protein. T  96.4   0.064 1.6E-06   31.7   9.9  106   54-164    18-138 (267)
400 COG0410 LivF ABC-type branched  96.3   0.023 5.9E-07   34.5   7.5  139   63-202    25-195 (237)
401 PRK00440 rfc replication facto  96.3   0.042 1.1E-06   32.9   8.8   81   55-159    28-115 (318)
402 cd03262 ABC_HisP_GlnQ_permease  96.3  0.0058 1.5E-07   38.3   4.4   42   63-105    22-63  (213)
403 COG1703 ArgK Putative periplas  96.3   0.081 2.1E-06   31.1  10.2   97   66-163    50-161 (323)
404 TIGR00968 3a0106s01 sulfate AB  96.3  0.0058 1.5E-07   38.3   4.3   45   63-108    22-66  (241)
405 PRK12402 replication factor C   96.3  0.0092 2.3E-07   37.0   5.2   35   54-91     26-60  (337)
406 COG1341 Predicted GTPase or GT  96.3   0.016 4.2E-07   35.5   6.5   38   66-104    73-110 (398)
407 PRK00091 miaA tRNA delta(2)-is  96.3   0.035 8.8E-07   33.4   8.1   85   66-153     3-102 (304)
408 TIGR00750 lao LAO/AO transport  96.3   0.049 1.2E-06   32.5   8.8  106   54-164    27-153 (333)
409 PRK04296 thymidine kinase; Pro  96.3   0.022 5.6E-07   34.7   7.0   89   66-157     1-92  (197)
410 TIGR01166 cbiO cobalt ABC tran  96.3  0.0047 1.2E-07   38.9   3.6   40   64-104    15-54  (190)
411 PRK09435 arginine/ornithine tr  96.3   0.096 2.5E-06   30.6  10.8  106   54-164    38-158 (325)
412 COG4088 Predicted nucleotide k  96.3  0.0065 1.7E-07   38.0   4.3   33   68-100     2-34  (261)
413 TIGR03018 pepcterm_TyrKin exop  96.2   0.097 2.5E-06   30.6  11.5   40   66-105    34-75  (207)
414 PRK09376 rho transcription ter  96.2   0.042 1.1E-06   32.8   8.4   88   66-158   168-269 (416)
415 TIGR03371 cellulose_yhjQ cellu  96.2   0.098 2.5E-06   30.5  13.2   37   68-104     2-39  (246)
416 PRK09112 DNA polymerase III su  96.2   0.023 5.9E-07   34.5   6.9   96   61-158    41-154 (352)
417 cd03257 ABC_NikE_OppD_transpor  96.2   0.007 1.8E-07   37.8   4.2   42   63-105    27-68  (228)
418 PRK10751 molybdopterin-guanine  96.2   0.024 6.2E-07   34.4   6.9   95   69-164     4-116 (170)
419 PRK11231 fecE iron-dicitrate t  96.2   0.013 3.3E-07   36.1   5.5   54   63-118    24-81  (255)
420 TIGR01968 minD_bact septum sit  96.2   0.027   7E-07   34.1   7.1  144   72-262     7-185 (272)
421 TIGR02673 FtsE cell division A  96.2   0.068 1.7E-06   31.5   9.1  135   48-204    11-197 (215)
422 pfam09818 ABC_ATPase Predicted  96.2    0.11 2.8E-06   30.3  10.2  122   28-153   196-347 (447)
423 PRK13873 conjugal transfer ATP  96.1   0.015 3.9E-07   35.7   5.7   49   66-116   441-490 (815)
424 COG3840 ThiQ ABC-type thiamine  96.1  0.0082 2.1E-07   37.3   4.3   45   63-108    21-66  (231)
425 PRK00080 ruvB Holliday junctio  96.1   0.018 4.6E-07   35.2   6.0   83   51-162    37-119 (328)
426 PRK13853 type IV secretion sys  96.1   0.015 3.8E-07   35.7   5.5   63   50-116   412-478 (789)
427 COG3842 PotA ABC-type spermidi  96.1  0.0068 1.7E-07   37.9   3.8   54   62-116    26-80  (352)
428 COG2255 RuvB Holliday junction  96.1   0.011 2.8E-07   36.5   4.8   80   54-162    41-120 (332)
429 cd01127 TrwB Bacterial conjuga  96.1   0.013 3.3E-07   36.1   5.1   51   61-111    31-86  (410)
430 TIGR00630 uvra excinuclease AB  96.1  0.0045 1.2E-07   39.0   2.7   31   64-94     19-50  (956)
431 PRK07667 uridine kinase; Provi  96.1   0.032 8.1E-07   33.6   7.0   38   68-105    15-52  (190)
432 pfam09848 DUF2075 Uncharacteri  96.1   0.014 3.6E-07   35.9   5.2   48   68-115     2-51  (348)
433 COG1116 TauB ABC-type nitrate/  96.1   0.009 2.3E-07   37.1   4.2   40   64-104    26-65  (248)
434 pfam05729 NACHT NACHT domain.   96.1   0.016   4E-07   35.6   5.5   84   68-159     1-93  (165)
435 PRK05986 cob(I)yrinic acid a,c  96.1   0.089 2.3E-06   30.8   9.3   94   64-158    20-127 (190)
436 TIGR02533 type_II_gspE general  96.0 0.00077   2E-08   43.9  -1.3   78   14-95    193-273 (495)
437 cd01983 Fer4_NifH The Fer4_Nif  96.0   0.016   4E-07   35.5   5.3   33   70-102     2-34  (99)
438 COG1132 MdlB ABC-type multidru  96.0    0.03 7.7E-07   33.8   6.7   75   63-138   351-440 (567)
439 COG0529 CysC Adenylylsulfate k  96.0   0.022 5.6E-07   34.7   6.0   81   66-157    22-105 (197)
440 PRK00635 excinuclease ABC subu  96.0  0.0071 1.8E-07   37.8   3.4   32   63-94    957-989 (1809)
441 PRK13721 conjugal transfer ATP  96.0   0.017 4.4E-07   35.3   5.4   50   66-116   473-522 (864)
442 PRK06696 uridine kinase; Valid  95.9   0.015 3.7E-07   35.8   4.9   39   69-107    28-66  (227)
443 PRK13540 cytochrome c biogenes  95.9   0.011 2.8E-07   36.6   4.2   40   63-104    23-63  (200)
444 pfam06068 TIP49 TIP49 C-termin  95.9   0.011 2.7E-07   36.6   4.1   99   62-160    45-189 (395)
445 PRK13657 cyclic beta-1,2-gluca  95.9   0.036 9.2E-07   33.3   6.9   73   62-135   356-443 (585)
446 KOG3062 consensus               95.9    0.03 7.8E-07   33.7   6.5   78   69-156     3-84  (281)
447 KOG0055 consensus               95.9   0.036 9.1E-07   33.3   6.8   65   63-128   375-453 (1228)
448 PRK07471 DNA polymerase III su  95.9   0.075 1.9E-06   31.3   8.4   99   54-158    28-152 (363)
449 COG1118 CysA ABC-type sulfate/  95.9  0.0094 2.4E-07   37.0   3.7   52   63-117    24-81  (345)
450 PRK06761 hypothetical protein;  95.9   0.069 1.8E-06   31.5   8.1  130   67-204     2-148 (281)
451 PRK09984 phosphonate/organopho  95.9    0.14 3.7E-06   29.5   9.8   27   64-90     27-53  (262)
452 pfam00485 PRK Phosphoribulokin  95.9   0.036 9.2E-07   33.3   6.6   29   69-97      1-29  (196)
453 COG1134 TagH ABC-type polysacc  95.9   0.056 1.4E-06   32.1   7.5  144   64-242    50-229 (249)
454 TIGR02173 cyt_kin_arch cytidyl  95.9   0.007 1.8E-07   37.8   2.9   51   69-126     2-52  (173)
455 KOG1969 consensus               95.8   0.056 1.4E-06   32.1   7.5   60   48-110   307-366 (877)
456 CHL00181 cbbX CbbX; Provisiona  95.8   0.028 7.1E-07   34.0   5.9   74   12-95     10-87  (287)
457 TIGR02142 modC_ABC molybdate A  95.8   0.012   3E-07   36.4   3.9   54   51-108    10-69  (361)
458 cd03219 ABC_Mj1267_LivG_branch  95.8   0.026 6.6E-07   34.2   5.7   54   63-117    22-77  (236)
459 pfam01580 FtsK_SpoIIIE FtsK/Sp  95.8    0.13 3.3E-06   29.8   9.2  119   69-202    40-198 (202)
460 COG3839 MalK ABC-type sugar tr  95.8   0.013 3.2E-07   36.2   4.0   41   64-105    26-66  (338)
461 PTZ00185 ATPase alpha subunit;  95.8    0.12   3E-06   30.0   9.0  160   46-209   171-363 (574)
462 COG0411 LivG ABC-type branched  95.8   0.027 6.9E-07   34.1   5.6   54   63-118    26-82  (250)
463 COG3640 CooC CO dehydrogenase   95.8   0.025 6.4E-07   34.3   5.5   50   69-120     2-52  (255)
464 TIGR02868 CydC ABC transporter  95.8   0.012 3.1E-07   36.2   3.9   75   63-138   383-476 (566)
465 KOG2373 consensus               95.8    0.04   1E-06   33.0   6.4  142   50-205   258-426 (514)
466 PRK05506 bifunctional sulfate   95.7   0.027 6.8E-07   34.1   5.5   66   65-135    85-161 (613)
467 COG4604 CeuD ABC-type enteroch  95.7   0.017 4.2E-07   35.4   4.4   54   63-117    23-79  (252)
468 cd02034 CooC The accessory pro  95.7    0.14 3.6E-06   29.6   9.1   84   70-157     2-98  (116)
469 TIGR01184 ntrCD nitrate ABC tr  95.7   0.017 4.4E-07   35.3   4.4   56   64-128     8-63  (230)
470 CHL00131 ycf16 sulfate ABC tra  95.7    0.02 5.1E-07   34.9   4.7   54   63-117    28-85  (252)
471 cd02032 Bchl_like This family   95.7    0.12   3E-06   30.0   8.7   40   69-108     2-41  (267)
472 COG2894 MinD Septum formation   95.7    0.12   3E-06   30.0   8.6   87   69-156     5-124 (272)
473 KOG1533 consensus               95.7   0.016   4E-07   35.6   4.1   38   72-109     7-46  (290)
474 COG1204 Superfamily II helicas  95.7   0.036 9.1E-07   33.3   5.9   97   53-157    34-158 (766)
475 cd03288 ABCC_SUR2 The SUR doma  95.6   0.019 4.9E-07   35.0   4.5   41   62-103    42-82  (257)
476 PRK00635 excinuclease ABC subu  95.6   0.013 3.2E-07   36.2   3.4   31   64-94     23-54  (1809)
477 PRK11147 ABC transporter ATPas  95.6    0.18 4.7E-06   28.8  11.0  121   63-205   341-498 (632)
478 pfam10236 DAP3 Mitochondrial r  95.6   0.017 4.4E-07   35.3   4.1   69   62-135    19-91  (274)
479 cd03251 ABCC_MsbA MsbA is an e  95.6   0.019 4.9E-07   35.0   4.3   40   63-103    24-63  (234)
480 cd03270 ABC_UvrA_I The excisio  95.6    0.01 2.6E-07   36.8   2.9   27   63-89     17-43  (226)
481 cd03243 ABC_MutS_homologs The   95.6   0.074 1.9E-06   31.3   7.3  169   54-291    21-202 (202)
482 KOG0730 consensus               95.6   0.032 8.2E-07   33.6   5.4  114   63-201   464-578 (693)
483 PRK13643 cbiO cobalt transport  95.6    0.02   5E-07   34.9   4.3   48   51-100    18-65  (288)
484 cd03248 ABCC_TAP TAP, the Tran  95.5   0.021 5.3E-07   34.8   4.4   41   63-104    36-76  (226)
485 cd03286 ABC_MSH6_euk MutS6 hom  95.5   0.043 1.1E-06   32.8   6.0  187   53-291    19-210 (218)
486 PRK09536 btuD corrinoid ABC tr  95.5   0.038 9.7E-07   33.1   5.7   54   63-118    24-81  (409)
487 cd03249 ABC_MTABC3_MDL1_MDL2 M  95.5   0.021 5.2E-07   34.8   4.3   53   63-116    25-80  (238)
488 cd03278 ABC_SMC_barmotin Barmo  95.5  0.0096 2.4E-07   36.9   2.5   22   62-84     18-39  (197)
489 cd03227 ABC_Class2 ABC-type Cl  95.5    0.15 3.7E-06   29.4   8.6   32   52-88     11-42  (162)
490 cd00561 CobA_CobO_BtuR ATP:cor  95.5    0.15 3.9E-06   29.3   8.6   92   66-158     2-108 (159)
491 COG4559 ABC-type hemin transpo  95.5   0.037 9.3E-07   33.2   5.4   71   63-133    23-95  (259)
492 cd03284 ABC_MutS1 MutS1 homolo  95.5    0.11 2.7E-06   30.4   7.7  130   53-205    20-154 (216)
493 PRK13891 conjugal transfer pro  95.4   0.024   6E-07   34.4   4.3   39   69-107   490-529 (852)
494 cd03253 ABCC_ATM1_transporter   95.4   0.021 5.3E-07   34.8   4.0   54   62-116    22-78  (236)
495 PRK10789 putative multidrug tr  95.4   0.024 6.2E-07   34.4   4.3   66   62-128   336-415 (569)
496 cd03369 ABCC_NFT1 Domain 2 of   95.4    0.03 7.5E-07   33.8   4.7   55   62-117    29-86  (207)
497 TIGR00630 uvra excinuclease AB  95.4   0.015 3.9E-07   35.6   3.2   30   63-92    661-690 (956)
498 KOG0652 consensus               95.4    0.13 3.4E-06   29.7   8.1  118   63-203   201-320 (424)
499 cd03285 ABC_MSH2_euk MutS2 hom  95.4    0.07 1.8E-06   31.5   6.6  131   53-205    19-154 (222)
500 PRK12678 transcription termina  95.4    0.13 3.2E-06   29.8   7.9  101   47-158   396-511 (667)

No 1  
>PRK09354 recA recombinase A; Provisional
Probab=100.00  E-value=0  Score=817.78  Aligned_cols=334  Identities=70%  Similarity=1.087  Sum_probs=324.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             16769999999999986761887379703665533465501477278999723897268807999706872378999999
Q gi|255764460|r    8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT   87 (363)
Q Consensus         8 ~~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~   87 (363)
                      ...+|.++|+.++++|+|+||++++|+||+...  ..+++|||||++||.+||+||+|+|||+|||||+||||||||||+
T Consensus         3 ~~~~~~~~l~~a~~~i~k~fg~g~im~l~~~~~--~~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~   80 (350)
T PRK09354          3 MDEDKQKALEAALKQIEKQFGKGSIMRLGDDES--MDVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHA   80 (350)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CCCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             566899999999999998609874477788888--776654477178999875899678708999889877799999999


Q ss_pred             HHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             87520089879999738855668899819883344897258489999999999744897689981433322026554345
Q gi|255764460|r   88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM  167 (363)
Q Consensus        88 ~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~  167 (363)
                      ++++||.|+.|+|||+||++||+||+++|||+++|+|+||+++||++++++.|++++++|+||||||+||+|++|+|++|
T Consensus        81 iaeaQk~Gg~~a~iDaE~ald~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~m  160 (350)
T PRK09354         81 IAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEM  160 (350)
T ss_pred             HHHHHHCCCCEEEEEECCCCCHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCC
T ss_conf             99999759947999600027988999849771571785686799999999999854884189982533457688873133


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             55302247888767767777642017818999863411456654665125655311111124897504553445772476
Q gi|255764460|r  168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG  247 (363)
Q Consensus       168 ~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG  247 (363)
                      +|+++|++||+||++||||+..+++++|++|||||+|++||+|||+|++||||+||+||||+||+++|.+++|++++++|
T Consensus       161 gd~~vG~qARlmSqalRKlt~~i~ks~t~~IfINQlR~kiGvmfG~petT~GG~ALkFyaSvRl~irr~~~iK~g~~~iG  240 (350)
T PRK09354        161 GDSHVGLQARLMSQALRKLTGNINKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIG  240 (350)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEE
T ss_conf             54226389999999999999998557828999743232146606898777763300121228884123563135883588


Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf             79998774057789851589998618742311159999973286230274478889450303899999986679999999
Q gi|255764460|r  248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI  327 (363)
Q Consensus       248 ~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~enp~l~~~i  327 (363)
                      ++++|+|+|||++||||+|+|+|+||+|||++++|+|+|+++|+|+|+||||+|+++++||||++++.||+|||+++++|
T Consensus       241 ~~ikvkvvKNK~apPfk~ae~dI~yg~GI~~~~elldla~~~gii~KsGaWysy~~~~~gQG~~~~~~~l~en~~~~~~i  320 (350)
T PRK09354        241 NRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEI  320 (350)
T ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCEEECCEEECCHHHHHHHHHHHCHHHHHHH
T ss_conf             89999998568689975699998717766725479999997798783024099899870450999999998798999999


Q ss_pred             HHHHHHHHCCCCCCCC
Q ss_conf             9999998177754555
Q gi|255764460|r  328 ESLLRQNAGLVADSLL  343 (363)
Q Consensus       328 ~~~ire~~~~~~~~~~  343 (363)
                      +.+||+.+...+....
T Consensus       321 ~~~i~~~~~~~~~~~~  336 (350)
T PRK09354        321 EKKIREKLGLASPAAE  336 (350)
T ss_pred             HHHHHHHHCCCCCCCC
T ss_conf             9999998589998766


No 2  
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553   The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage .    RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , ,  among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, -strand 3, the loop C-terminal to -strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and -strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between -strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at -strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at -strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=100.00  E-value=0  Score=793.45  Aligned_cols=321  Identities=69%  Similarity=1.098  Sum_probs=315.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             69999999999986761887379703665533465501477278999723897268807999706872378999999875
Q gi|255764460|r   11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        11 ~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      +|.++|+.|+++|+|.||+|++|+||+...  ..++.|||||+.||.|||+||+|+|||+||||||||||||||||++|+
T Consensus         1 ~k~~al~~A~~~iek~FGkG~im~Lg~~~~--~~v~~i~tGsl~LD~AlG~GG~P~GRi~EiYGpESsGKTTLal~~iA~   78 (322)
T TIGR02012         1 DKQKALEAALAQIEKQFGKGSIMKLGEKSV--EDVEVISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHVIAE   78 (322)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEECCCCCC--CCEEEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             946889999999865208821451255444--310021253013435516798987507998548988478999999999


Q ss_pred             HHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             20089879999738855668899819883344897258489999999999744897689981433322026554345553
Q gi|255764460|r   91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus        91 ~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      +||.||.|+|||+||+|||.||++||||.++|+++|||++||+|+|++.|+||+++|+||||||+||+|++|+||+|+|.
T Consensus        79 ~Qk~Gg~~afiDAEHAlD~~YA~~LGv~~~~L~~sQPd~GE~ALeI~~~L~rSgAvD~iVvDSVAAL~P~aEieGemgd~  158 (322)
T TIGR02012        79 AQKAGGVAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDS  158 (322)
T ss_pred             HHHCCCEEEEEECHHHCCHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCC
T ss_conf             97439838998451303778899836452471120888714699999998723761179973400138712317543544


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-EEEEEE
Q ss_conf             0224788876776777764201781899986341145665466512565531111112489750455344577-247679
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ  249 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~-~~iG~~  249 (363)
                      ++|++||+||++||||+..+++++|++|||||+|+|||+|||+|+||+||+|||||||+||++||.+.+|+++ +.+|++
T Consensus       159 ~~Gl~ARLMS~ALRKl~g~~~k~~t~~iFiNQ~R~KiGv~fG~peTTtGG~ALKFYas~Rldirr~~~~K~g~~~~~G~~  238 (322)
T TIGR02012       159 HVGLQARLMSQALRKLTGALSKSNTTLIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGSVKEGENEAVGNR  238 (322)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCE
T ss_conf             23257888999999888765320523764002222322111788887764142334433444311465415400101433


Q ss_pred             EEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99877405778985158999861874231115999997328623027447888945030389999998667999999999
Q gi|255764460|r  250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES  329 (363)
Q Consensus       250 v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~enp~l~~~i~~  329 (363)
                      +++||+|||++||||+++|+|.||.||++.++++|++++.++|+|+|+||+|.++++||||++++.+|++||++.++|+.
T Consensus       239 ~~vkv~KNKvApPF~~aefdi~yg~Gi~~~g~~id~~~~~~ii~k~Gsw~sY~~~~lGQG~e~~~~~l~~~~~~~~~i~~  318 (322)
T TIGR02012       239 VKVKVVKNKVAPPFREAEFDILYGEGISKLGEIIDLAVELDIIKKSGSWYSYGDEKLGQGRENVKEFLKENPELAEEIEK  318 (322)
T ss_pred             EEEEEEEECCCCCHHHHHEEEEECCCHHHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCHHHHHHHHHHCHHHHHHHHH
T ss_conf             57898750679852130010221114023345676444201122047513116752322379999998516899999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|255764460|r  330 LLRQ  333 (363)
Q Consensus       330 ~ire  333 (363)
                      +|++
T Consensus       319 ~~~~  322 (322)
T TIGR02012       319 KVRE  322 (322)
T ss_pred             HHCC
T ss_conf             8519


No 3  
>cd00983 recA RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00  E-value=0  Score=768.71  Aligned_cols=324  Identities=69%  Similarity=1.088  Sum_probs=318.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             69999999999986761887379703665533465501477278999723897268807999706872378999999875
Q gi|255764460|r   11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        11 ~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      +|+++|+.++++|+|+||++++|+|++..  ...+++|||||++||.+||+||+|.||||||||||||||||||||++++
T Consensus         1 ~~~~~l~~~~~~i~k~fg~~~~~~~~~~~--~~~~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~   78 (325)
T cd00983           1 EKQKALELALKQIEKKFGKGSIMKLGDDA--VQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE   78 (325)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             95789999999999871986458988777--8865346268199999975899668808999889877799999999999


Q ss_pred             HHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             20089879999738855668899819883344897258489999999999744897689981433322026554345553
Q gi|255764460|r   91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus        91 ~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      +|++|+.|+|||+||++||+|++++|||+++|+|+||+++||++++++.|++++.+|+||+||++||+|++|+|++++|+
T Consensus        79 aQk~gg~~~~iDaE~a~d~~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~~li~s~~~dliViDSvaal~p~~E~e~~~~d~  158 (325)
T cd00983          79 AQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDS  158 (325)
T ss_pred             HHHCCCEEEEEEHHHCCCHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCC
T ss_conf             87359839999625425989999809984675896663899999999997515887679981511236578876011321


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE
Q ss_conf             02247888767767777642017818999863411456654665125655311111124897504553445772476799
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT  250 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v  250 (363)
                      ++|++||+||++||++++.+++++|++|||||+|+++|+|||+|+++|||+||+||||+||++++.+++|++++++|+++
T Consensus       159 ~vg~~ArlmskalRklt~~l~k~~~~lIfiNQ~R~kiG~mfg~pe~t~GG~Alkf~aSvrl~l~k~~~ik~~~~~iG~~i  238 (325)
T cd00983         159 HVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRT  238 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCCCCCCCCCEEEEE
T ss_conf             14389999999999999875337807999554322157756898537997505512113899976131257885077699


Q ss_pred             EEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98774057789851589998618742311159999973286230274478889450303899999986679999999999
Q gi|255764460|r  251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL  330 (363)
Q Consensus       251 ~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~enp~l~~~i~~~  330 (363)
                      +|+|+|||++||||+|+|+|+||+|||++++|+|+|+++|+|+|+||||+|++++++|||++++.||+|||+++++|+++
T Consensus       239 kvkv~KnK~a~P~r~a~~~i~yg~GId~~~elldla~~~giI~k~Gawy~~~~e~~~qG~~~~~~~l~e~~e~~~~l~~~  318 (325)
T cd00983         239 KVKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADEIEKK  318 (325)
T ss_pred             EEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCEEECCEEEHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf             99999788689986799994678763425329999987797685455299899873766999999998799999999999


Q ss_pred             HHHHHC
Q ss_conf             999817
Q gi|255764460|r  331 LRQNAG  336 (363)
Q Consensus       331 ire~~~  336 (363)
                      ||+++.
T Consensus       319 i~~~~~  324 (325)
T cd00983         319 VREKLG  324 (325)
T ss_pred             HHHHCC
T ss_conf             999709


No 4  
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=100.00  E-value=0  Score=764.32  Aligned_cols=322  Identities=73%  Similarity=1.145  Sum_probs=315.1

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999986761887379703665533465501477278999723897268807999706872378999999875200
Q gi|255764460|r   14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK   93 (363)
Q Consensus        14 ~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk   93 (363)
                      |+|+.++++|+|+||++++|++++..  ...+++|||||++||.+||+||+|.||||||||||||||||||||+++++|+
T Consensus         1 ~~l~~~~~~i~k~~g~~~i~~~~~~~--~~~~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk   78 (322)
T pfam00154         1 KALEAALSQIEKQFGKGSIMRLGDKT--VEDVEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQK   78 (322)
T ss_pred             CHHHHHHHHHHHHHCCCCEEECCCCC--CCCCCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             95899999999973987458888877--7775446158089999875899778708999889877789999999999973


Q ss_pred             CCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             89879999738855668899819883344897258489999999999744897689981433322026554345553022
Q gi|255764460|r   94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG  173 (363)
Q Consensus        94 ~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g  173 (363)
                      +|+.|+|||+||++||+|++.+|||+++++|+||+++||++++++.|++++.+++||+||++||+|++|+|++++|+++|
T Consensus        79 ~gg~~~~iD~E~a~d~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g  158 (322)
T pfam00154        79 AGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVG  158 (322)
T ss_pred             CCCEEEEEEHHHHCCHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf             49938998536605988999809880253897788399999999998537997659982534567688875243223213


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEE
Q ss_conf             47888767767777642017818999863411456654665125655311111124897504553445772476799987
Q gi|255764460|r  174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK  253 (363)
Q Consensus       174 ~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~k  253 (363)
                      ++||+||++||++++.+++++|++|||||+|+++|+|||+|+++|||+||+||||+||+++|.+++|++++++|++++|+
T Consensus       159 ~~Ar~ms~alRklt~~l~k~~~~~IfiNQ~R~kiG~mfg~pe~t~GG~Alkf~aSvri~l~k~~~iK~g~~~vG~~i~~k  238 (322)
T pfam00154       159 LQARLMSQALRKLTGNISKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGEEVIGNRTKVK  238 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf             57999999999999997305854999765511146646998547786425411003787765010146786336999999


Q ss_pred             EEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74057789851589998618742311159999973286230274478889450303899999986679999999999999
Q gi|255764460|r  254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ  333 (363)
Q Consensus       254 v~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~enp~l~~~i~~~ire  333 (363)
                      |+|||++||||+|+|+|+|++|||++++|+|+|+++|+|+|+||||+|++++++|||++++.||+|||+++++|+++||+
T Consensus       239 vvKnK~a~P~~~ae~~i~y~~GId~~~~lldla~~~giI~k~Gawy~y~ge~~~qG~~~~~~~l~e~~~l~~~i~~~i~~  318 (322)
T pfam00154       239 VVKNKVAPPFKQAEFDIMYGEGISKEGELIDLGVKLGIVEKSGAWYSYNGEKIGQGRENAKQYLKENPEIAAEIEQKIRE  318 (322)
T ss_pred             EEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCEEECCEEECCHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf             98367489986799996158876643259999997796772256099899886245999999988699999999999999


Q ss_pred             HHCC
Q ss_conf             8177
Q gi|255764460|r  334 NAGL  337 (363)
Q Consensus       334 ~~~~  337 (363)
                      ++.+
T Consensus       319 ~~~~  322 (322)
T pfam00154       319 KLGL  322 (322)
T ss_pred             HHCC
T ss_conf             8396


No 5  
>PRK09519 recA recombinase A; Reviewed
Probab=100.00  E-value=0  Score=741.99  Aligned_cols=251  Identities=65%  Similarity=1.033  Sum_probs=245.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             67699999999999867618873797036655334655014772789997238972688079997068723789999998
Q gi|255764460|r    9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI   88 (363)
Q Consensus         9 ~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~   88 (363)
                      ..+|+|+|+.++++|+|+||+|++|+||+...  ..++.|||||++||.+||+||+|+|||+||||||||||||||||++
T Consensus         4 ~~~k~kaLe~al~~IeK~fGkGsiM~Lg~~~~--~~v~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~I   81 (790)
T PRK09519          4 TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAV   81 (790)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CCCCEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf             80389999999999998618852577788777--7654450461678887616884660499987897765899999999


Q ss_pred             HHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             75200898799997388556688998198833448972584899999999997448976899814333220265543455
Q gi|255764460|r   89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG  168 (363)
Q Consensus        89 a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~  168 (363)
                      |++||.||.|+|||+||++||+||+++|||+++|+|+||+++||+|+|++.|++++++|+|||||++||+|++|+|++|+
T Consensus        82 AeaQK~GG~aAfIDAEhAlDp~yA~~LGVdld~LLisQPdtGEqALeIae~LIrSgavDlIVVDSVAALvPKaEieGemg  161 (790)
T PRK09519         82 ANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMG  161 (790)
T ss_pred             HHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHCEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCC
T ss_conf             99985399799995200259999998395767806857980889999999998548954899805345687888616456


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf             53022478887677677776420178189998634114566546651256553111111248975045534457724767
Q gi|255764460|r  169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN  248 (363)
Q Consensus       169 d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~  248 (363)
                      |+++|+|||+||++||||++.+++++|++|||||+|+|||+|||||+|||||+|||||||+||++||.+.||+++++||+
T Consensus       162 D~~vGlQARLMSqALRKLT~~I~ks~t~vIFINQlReKIGVMFGnPETT~GGrALKFYASVRldiRr~~~IK~G~~~iG~  241 (790)
T PRK09519        162 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN  241 (790)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf             64288999999999999987763077499994210454057037998788864212221257755541200267722043


Q ss_pred             EEEEEEEECCCCC
Q ss_conf             9998774057789
Q gi|255764460|r  249 QTRVKVVKNKMAS  261 (363)
Q Consensus       249 ~v~~kv~Knk~~~  261 (363)
                      ++++||+|||++|
T Consensus       242 r~rvKVVKNK~a~  254 (790)
T PRK09519        242 RTRVKVVKNKCLA  254 (790)
T ss_pred             EEEEEEEECCCCC
T ss_conf             7899997335677


No 6  
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00  E-value=0  Score=475.94  Aligned_cols=273  Identities=64%  Similarity=0.981  Sum_probs=258.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             67699999999999867618873797036655334655014772789997238972688079997068723789999998
Q gi|255764460|r    9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI   88 (363)
Q Consensus         9 ~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~   88 (363)
                      ..++.++++.++.++++.|+++++|.++.... ...+.+|||||.+||.+|| ||+|+|+|||||||+||||||+|+|++
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~   81 (279)
T COG0468           4 GIDEEKALEAALAQIEKAFGKGSIMALGGDER-REDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLV   81 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHCCCCCCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             41466689999999987414440555457887-6436601655055787746-886553589984688765466899998


Q ss_pred             HHHHHCCCEEEEEECCCCCCHHHHHHHCCC-HHHEEEEECCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHH
Q ss_conf             752008987999973885566889981988-334489725848999999999974489--76899814333220265543
Q gi|255764460|r   89 AQSQKTGGTCAFVDAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALTPRAEIEG  165 (363)
Q Consensus        89 a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd-~~~l~~~~~~~~E~~~~i~~~li~~~~--~~liViDSi~al~p~~Eie~  165 (363)
                      +++|+.|+.|+|||+||+|+|+|++++|++ +++++++||++.|+++++++.+.++..  ++||||||+++++|..+++ 
T Consensus        82 ~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~-  160 (279)
T COG0468          82 ANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE-  160 (279)
T ss_pred             HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCC-
T ss_conf             8865379808999589998999999988754215368668977999999999987546887889982574346365548-


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf             45553022478887677677776420178189998634114566546651256553111111248975045534457724
Q gi|255764460|r  166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI  245 (363)
Q Consensus       166 ~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~  245 (363)
                         +.+++.++|.|+++||+|+..++++|+++|||||+|++|++|||+|++++||++|+||+++|++++|.+.+|  ++ 
T Consensus       161 ---d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~--~~-  234 (279)
T COG0468         161 ---DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLK--ED-  234 (279)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCC--CC-
T ss_conf             ---534899999999999999999997495899978403406766688665877238875532477765224432--35-


Q ss_pred             EEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf             767999877405778985158999861874231115999997328
Q gi|255764460|r  246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS  290 (363)
Q Consensus       246 iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~g  290 (363)
                      .|.+.+++++|||++|||++|+|+|.|+.|++...++.|++++++
T Consensus       235 ~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~~  279 (279)
T COG0468         235 VGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQG  279 (279)
T ss_pred             CCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCC
T ss_conf             687389999747989987656899650764665320354442069


No 7  
>cd01393 recA_like RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57.  Archaea have the RecA-like homologs radA and radB.
Probab=100.00  E-value=0  Score=364.86  Aligned_cols=209  Identities=45%  Similarity=0.674  Sum_probs=189.4

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC------CEEEEEECCCCCCHHHHHHHCCC---
Q ss_conf             147727899972389726880799970687237899999987520089------87999973885566889981988---
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFVDAEHALDSIYARKLGVD---  118 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g------~~~~~iD~E~~~~~~~a~~~Gvd---  118 (363)
                      ||||+..||.+|| ||||.|+||||||+++||||+|||++++++|+.+      +.|+|||+|++|+++|+++++.+   
T Consensus         1 isTG~~~lD~~Lg-GGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~   79 (226)
T cd01393           1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL   79 (226)
T ss_pred             CCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             9887478998857-998888399999999998999999999998542211699961999955775319999999876032


Q ss_pred             -----HHHEEEEECCCHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             -----33448972584899999999997---4489768998143332202655434555302247888767767777642
Q gi|255764460|r  119 -----LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI  190 (363)
Q Consensus       119 -----~~~l~~~~~~~~E~~~~i~~~li---~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~  190 (363)
                           ++++++++|++.|+.+++++.+.   .++.+++|||||+++++|..+.+    +..++.++++|++++|+|+.++
T Consensus        80 ~~~~~l~~i~~~~~~~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~r~~~~~----~~~~~~r~~~l~~~~~~L~~la  155 (226)
T cd01393          80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG----RGMLAERARLLSQALRKLLRLA  155 (226)
T ss_pred             CHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCHHHCC----CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             667764333684379999999999999987524784289993220011144427----6207899999999999999999


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEE
Q ss_conf             017818999863411456654665125655311111124897504553445772476799987740577898515899
Q gi|255764460|r  191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF  268 (363)
Q Consensus       191 ~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~  268 (363)
                      .++++++|+|||+|++++.|||+|++++||++|.|++++||+++|....      +|.+..++++||+ .+|+.+|+|
T Consensus       156 ~~~~~avv~tNQv~~~i~~~~~~~~~p~gG~~w~~~~~~Ri~l~k~~~~------~~~~r~~~~~k~p-~~p~~~~~~  226 (226)
T cd01393         156 DKFNVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRGI------IGERRIAKVVKSP-ALPEAEAEF  226 (226)
T ss_pred             HHCCCEEEEECEEEECCCCCCCCCCCCCCHHHHHHHCEEEEEEEECCCC------CCCEEEEEEEECC-CCCCCCCCC
T ss_conf             9849799996811781578789988787636646002699999966888------7887999999898-998766879


No 8  
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=100.00  E-value=0  Score=313.64  Aligned_cols=229  Identities=24%  Similarity=0.389  Sum_probs=188.5

Q ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH---C---CCEEEEEECCCC
Q ss_conf             9703665533465501477278999723897268807999706872378999999875200---8---987999973885
Q gi|255764460|r   33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK---T---GGTCAFVDAEHA  106 (363)
Q Consensus        33 ~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk---~---g~~~~~iD~E~~  106 (363)
                      .+..+-...++.+.+|||||..||.+|| ||+|.|.||||||+++||||+||++++.++|-   .   ++.|+|||||++
T Consensus        70 ~Ta~el~~~r~~~~~isTg~~~lD~lLg-GGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgt  148 (318)
T PRK04301         70 ETALEVLERRKSIGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENT  148 (318)
T ss_pred             CCHHHHHHHHHCCCCCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCC
T ss_conf             2699999986347824788878880547-983367078886688787035667767653376777898863799956898


Q ss_pred             CCHH----HHHHHCCC----HHHEEEEECCCHHHHHHHHH---HHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             5668----89981988----33448972584899999999---99744-8976899814333220265543455530224
Q gi|255764460|r  107 LDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRS-GAVDIIVIDSVAALTPRAEIEGDMGESLPGM  174 (363)
Q Consensus       107 ~~~~----~a~~~Gvd----~~~l~~~~~~~~E~~~~i~~---~li~~-~~~~liViDSi~al~p~~Eie~~~~d~~~g~  174 (363)
                      |+|+    +|+++|+|    +++++|++|.+.++.+.+++   .++.+ ..+.||||||+++++ |.|+.+.   ...+.
T Consensus       149 F~peRi~qia~~~g~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alf-R~e~~gr---g~l~~  224 (318)
T PRK04301        149 FRPERIEQMAEGLGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHF-RAEYVGR---GNLAE  224 (318)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHE-EECCCCC---CCHHH
T ss_conf             6979999999984999789864026861399899999999999999627880499994342321-2104685---30999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf             78887677677776420178189998634114566546651256553111111248975045534457724767999877
Q gi|255764460|r  175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV  254 (363)
Q Consensus       175 ~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv  254 (363)
                      +.+.+++++++|..++.++|+++++||||+++++.+||+|.++.||+.|.|++++||.++|..         |.+=.+++
T Consensus       225 Rq~~L~~~l~~L~~lA~~~niaVvvTNQV~~~~~~~~g~~~~P~gG~~~ah~~t~Rl~Lrk~~---------g~~R~~~l  295 (318)
T PRK04301        225 RQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHTATFRIYLRKSK---------GDKRIARL  295 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEECC---------CCEEEEEE
T ss_conf             999999999999999998595799961367547655688763566214030151899999768---------98799999


Q ss_pred             EECCCCCCCCEEEEEEECCCCCC
Q ss_conf             40577898515899986187423
Q gi|255764460|r  255 VKNKMASPFKQVEFDIMYGEGIS  277 (363)
Q Consensus       255 ~Knk~~~P~~~a~~~i~fg~GI~  277 (363)
                      +|+..-|+. +|.|.|. ..||.
T Consensus       296 ~~SP~lPe~-~~~F~It-~~GI~  316 (318)
T PRK04301        296 VDSPHLPEG-EAVFRIT-EEGIR  316 (318)
T ss_pred             EECCCCCCE-EEEEEEC-CCCCC
T ss_conf             778899972-7899984-88637


No 9  
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=100.00  E-value=0  Score=309.81  Aligned_cols=226  Identities=23%  Similarity=0.367  Sum_probs=188.5

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH------HCCCEEEEEECCCCCCHH
Q ss_conf             66553346550147727899972389726880799970687237899999987520------089879999738855668
Q gi|255764460|r   37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSI  110 (363)
Q Consensus        37 ~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q------k~g~~~~~iD~E~~~~~~  110 (363)
                      +....+..+.+|||||..||.+|| ||+|+|+|||||||++||||+||++++.++|      ..++.|+|||||++|+|+
T Consensus        14 ~~~~~r~~~~~isTg~~~LD~lLg-GGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~e   92 (261)
T pfam08423        14 ELHQRRSEVIRITTGSKELDKLLG-GGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPE   92 (261)
T ss_pred             HHHHHHCCCCEECCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCHH
T ss_conf             999975487357789878998737-9866772999989988878999999999940709656999728999368886989


Q ss_pred             H----HHHHCCC----HHHEEEEECCCHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf             8----9981988----33448972584899999999---99744897689981433322026554345553022478887
Q gi|255764460|r  111 Y----ARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM  179 (363)
Q Consensus       111 ~----a~~~Gvd----~~~l~~~~~~~~E~~~~i~~---~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~m  179 (363)
                      +    |+++|+|    ++++++.+|.+.++.+++++   .++.+..++||||||+++++ |.|++++   ...+.+.+.|
T Consensus        93 Rl~qia~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~LvVvDSiaalf-R~e~~g~---~~l~~R~~~L  168 (261)
T pfam08423        93 RIVAIAERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFALLIVDSATALY-RTDFSGR---GELAERQQHL  168 (261)
T ss_pred             HHHHHHHHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEE-EECCCCC---CCHHHHHHHH
T ss_conf             99999998299978987533141689989999999999998731783499983240023-3300367---5289999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             677677776420178189998634114566---54665125655311111124897504553445772476799987740
Q gi|255764460|r  180 SQALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK  256 (363)
Q Consensus       180 s~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~---m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~K  256 (363)
                      ++++++|..++.++++++|+|||++++++.   ++|+|.++.||++|.|++++||.++|..         |..=.++++|
T Consensus       169 ~~~l~~L~~lA~~~~~aVvvTNQV~~~~~~~~~f~~~~~~PagG~~~~h~~~~Rl~L~k~~---------g~~R~~~l~k  239 (261)
T pfam08423       169 AKFLRSLQRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGHIMAHASTTRLYLRKGR---------GEQRVCKIYD  239 (261)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHCEEEEEEEECC---------CCEEEEEEEE
T ss_conf             9999999999998095899960479852886301378775750577773420899999669---------9847999987


Q ss_pred             CCCCCCCCEEEEEEECCCCCCC
Q ss_conf             5778985158999861874231
Q gi|255764460|r  257 NKMASPFKQVEFDIMYGEGISF  278 (363)
Q Consensus       257 nk~~~P~~~a~~~i~fg~GI~~  278 (363)
                      ++.-|+ .+++|.|. ..||..
T Consensus       240 sp~~pe-~~~~F~It-~~GI~D  259 (261)
T pfam08423       240 SPCLPE-SEAVFAIS-EGGIGD  259 (261)
T ss_pred             CCCCCC-CEEEEEEE-CCCCCC
T ss_conf             899998-64899993-897126


No 10 
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938   This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00  E-value=4.2e-45  Score=304.61  Aligned_cols=240  Identities=24%  Similarity=0.376  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHH-HHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             69999999999986-76188737970366553346550147727899972389726880799970687237899999987
Q gi|255764460|r   11 DKSKALEAALSQIQ-RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA   89 (363)
Q Consensus        11 ~k~~~l~~~~~~i~-k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a   89 (363)
                      .-.|.+++|-+..+ ..|-++.     +-.+.++.|.+|||||..||.+|| |||.+-.|||+||++|||||++|++++.
T Consensus        45 ~A~kiI~AAR~a~~~~~F~~a~-----~vl~rR~~v~kitTgs~~LDeLLG-GGiETqaiTE~~GEFGSGKTQ~~HqLAV  118 (333)
T TIGR02236        45 TAAKIIQAARKAADLGGFETAD-----DVLERRKSVGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAV  118 (333)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHH-----HHHHHHHCCCEEECCCHHHHHHCC-CCCCCEEEEEEEEEECCCHHHHHHHHHH
T ss_conf             8999999999984676721489-----999987207504448636765607-9600005888771007865787667655


Q ss_pred             HHHH---------------CCC-EEEEEECCCCCCHHH----HH--HHC-------CCHH----HEEEEECC-CHHHHH-
Q ss_conf             5200---------------898-799997388556688----99--819-------8833----44897258-489999-
Q gi|255764460|r   90 QSQK---------------TGG-TCAFVDAEHALDSIY----AR--KLG-------VDLK----NLLISQPD-TGEQAL-  134 (363)
Q Consensus        90 ~~qk---------------~g~-~~~~iD~E~~~~~~~----a~--~~G-------vd~~----~l~~~~~~-~~E~~~-  134 (363)
                      +.|=               .++ .|+|||||+||+||+    |+  +.|       +|.+    +++|++.- |-.|++ 
T Consensus       119 nVQlP~flfydeeave~GGL~gp~av~IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~evL~nI~vARAyNS~HQmll  198 (333)
T TIGR02236       119 NVQLPEFLFYDEEAVEKGGLEGPKAVYIDTENTFRPERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARAYNSNHQMLL  198 (333)
T ss_pred             HHCCCCHHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCHHHHHH
T ss_conf             32287112101100014776787689985597986257999998631113666532787777203047785263147999


Q ss_pred             -HHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf             -9999997448-----9768998143332202655434555302247888767767777642017818999863411456
Q gi|255764460|r  135 -EITDMLVRSG-----AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG  208 (363)
Q Consensus       135 -~i~~~li~~~-----~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig  208 (363)
                       +-+..|+++.     ++.|||||||.|.. |+|+-|.  +....+|.+| ++.|..|..+.+-+|+++++||||.++|.
T Consensus       199 ve~~~~li~e~~~~~~pv~L~~VDSLtsHF-RaEY~GR--g~LA~RQQKL-nkHlh~L~~ladlyn~aV~VTNQV~A~PD  274 (333)
T TIGR02236       199 VEKAKELIKELKNEDKPVRLLIVDSLTSHF-RAEYVGR--GNLAERQQKL-NKHLHDLLRLADLYNAAVVVTNQVMARPD  274 (333)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEECCCCCCC-CCCCCCH--HHHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             999999997301579946899981210022-3676450--2478898698-78899886541402178998556122787


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             65466512565531111112489750455344577247679998774057789851589998
Q gi|255764460|r  209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI  270 (363)
Q Consensus       209 ~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i  270 (363)
                      ++||+|+.+.||+.|.|.|+.|||+||+.         |.+=-+|++=+..=| --+|-|.|
T Consensus       275 aFFG~Pt~piGGhilgH~AT~R~yLrKsk---------~~kRiarl~DsP~LP-eGEavfri  326 (333)
T TIGR02236       275 AFFGDPTKPIGGHILGHAATFRLYLRKSK---------GDKRIARLVDSPHLP-EGEAVFRI  326 (333)
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEEEECC---------CCEEEEEEECCCCCC-CCCEEEEE
T ss_conf             34486987767715412785689999647---------981489987389898-83068867


No 11 
>PTZ00035 Rad51; Provisional
Probab=100.00  E-value=7e-44  Score=297.08  Aligned_cols=245  Identities=21%  Similarity=0.303  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             99999999998676188737970366553346550147727899972389726880799970687237899999987520
Q gi|255764460|r   13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        13 ~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      +|.++.+-+-++--|     ++..+....++.+-.|+|||..||.+|| |||+.|.|||+||+++||||+||++++.++|
T Consensus        82 ~Ki~~~a~k~~~~gF-----~ta~~~~~~R~~~~~itTGs~~LD~LLG-GGiet~sITEi~Ge~gsGKTQlChqLaV~~Q  155 (350)
T PTZ00035         82 EKLKKACKELCNSGF-----CNAIDYHDARQNLIKFTTGSKQLDRLLK-GGIETGGITELFGEFRTGKSQLCHTLAITCQ  155 (350)
T ss_pred             HHHHHHHHHHCCCCC-----CCHHHHHHHHHHCEEECCCCHHHHHHHC-CCEECCCEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             999999997557777-----1199999998646035758578887627-8941385878972798978999999999904


Q ss_pred             H------CCCEEEEEECCCCCCHHH----HHHHCCCH----HHEEEEECCCHHHHHHHHH---HHHHCCCCCEEEEECCC
Q ss_conf             0------898799997388556688----99819883----3448972584899999999---99744897689981433
Q gi|255764460|r   93 K------TGGTCAFVDAEHALDSIY----ARKLGVDL----KNLLISQPDTGEQALEITD---MLVRSGAVDIIVIDSVA  155 (363)
Q Consensus        93 k------~g~~~~~iD~E~~~~~~~----a~~~Gvd~----~~l~~~~~~~~E~~~~i~~---~li~~~~~~liViDSi~  155 (363)
                      -      .+|.|+|||||++|.|++    |+++|+|+    ++++|+++.+.++.+++++   .++.+..+.||||||++
T Consensus       156 LP~~~GG~~GkvvYIDTEgtFrpeRi~qIA~~~gld~~~vL~nI~~ara~n~ehq~~ll~~~~~~~~e~~vrLlIVDSit  235 (350)
T PTZ00035        156 LPIEQSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASAMMADARFALLIVDSAT  235 (350)
T ss_pred             CCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_conf             85777798862799968899878999999987099979985332232206878899999999998511675899854456


Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             322026554345553022478887677677776420178189998634114566---54665125655311111124897
Q gi|255764460|r  156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLD  232 (363)
Q Consensus       156 al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~---m~g~p~~~~GG~al~~~aS~rl~  232 (363)
                      +++ |.|+.+.   .....+.+.+++++++|..++.++|+++++||||.++++.   ++|+|.++.||+.|.|++++||.
T Consensus       236 alF-R~ef~GR---geLa~RQq~L~~~l~~L~~lA~~~nvAVvvTNQV~a~pd~~~~f~g~~~kPiGG~i~aHasttRl~  311 (350)
T PTZ00035        236 ALY-RSEYIGR---GELATRQSHLCRFLRGLQRIADIYGVAVIITNQVVAKVDAMSMFGGHEKIPIGGNIIAHASQTRLY  311 (350)
T ss_pred             HHH-HHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCCCCCCCCCCCEEEEEHHEEEEE
T ss_conf             676-6540570---148999999999999999999980956999276166677543357887767644104220038899


Q ss_pred             EECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCC
Q ss_conf             5045534457724767999877405778985158999861874231
Q gi|255764460|r  233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF  278 (363)
Q Consensus       233 i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~  278 (363)
                      ++|..         |..=.+|++++..-|+ .+|.|.|. ..||..
T Consensus       312 LrKg~---------g~~Riakl~dSP~lPe-~ea~F~It-~~GI~D  346 (350)
T PTZ00035        312 LRKGR---------GESRICKIYDSPVLPE-GEAVFAIT-EGGIAD  346 (350)
T ss_pred             EEECC---------CCEEEEEEECCCCCCC-CEEEEEEC-CCCCCC
T ss_conf             98668---------9835899806998987-53789980-787679


No 12 
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=100.00  E-value=3e-42  Score=286.74  Aligned_cols=214  Identities=27%  Similarity=0.463  Sum_probs=175.8

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCH----
Q ss_conf             55014772789997238972688079997068723789999998752008987999973885566889981-9883----
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDL----  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~----  119 (363)
                      .++||||+.+||.+|| ||+|+|++|||+|+|++||||||||+++++|+.|+.|+|||+|+ |.++++.++ |.+.    
T Consensus         2 ~erisTG~~~lD~~Lg-GGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~-~~~er~~qi~~~~~~~~~   79 (224)
T PRK09361          2 EELLPTGCKSLDELLG-GGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEG-LSPERFKQIAGEDFEELL   79 (224)
T ss_pred             CCEECCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHCCCHHHHH
T ss_conf             8530379789998626-99888879999899998599999999999997499099967876-788999998565734542


Q ss_pred             HHEEEEECCCHHHHHHHH---HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             344897258489999999---99974489768998143332202655434555302247888767767777642017818
Q gi|255764460|r  120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI  196 (363)
Q Consensus       120 ~~l~~~~~~~~E~~~~i~---~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~  196 (363)
                      +++.+.+|.+.++....+   ..+.+ ..+++|||||+++++ +.|.+.    ...+...+.+++.+++|..++.+++++
T Consensus        80 ~~i~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDSi~~~~-~~e~~~----~~~~~~~~~l~~~~~~L~~~a~~~~~~  153 (224)
T PRK09361         80 SNIIIFEPSSFEEQREAIQKAEKIAK-ENVGLIVLDSATSLY-RLELDD----NDNSKLNRELGKQISHLLSLARKHNIA  153 (224)
T ss_pred             HCCEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCHHHE-EHHCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             06147247988999999999998750-587389996230100-000145----765899999999999999999971986


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCC
Q ss_conf             99986341145665466512565531111112489750455344577247679998774057789851589998618742
Q gi|255764460|r  197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI  276 (363)
Q Consensus       197 ~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI  276 (363)
                      +|+|||+|.+++.+++.|   .||++|+|++++||++.+.+     +   + .=.++++|||++||+..+.|.|. ++||
T Consensus       154 vvl~nqV~~~~~~~~~~p---aGg~~l~h~~d~~l~le~~~-----~---~-~R~l~v~Knr~~p~~~~~~f~it-~~Gi  220 (224)
T PRK09361        154 VVITNQVYSDIDSDGLRP---LGGHTLEHWSKAILRLEKLR-----N---G-KRRATLEKHRSRPEGESAEFRIT-DRGI  220 (224)
T ss_pred             EEEEEEEEECCCCCCCCC---CCCCCEEEEEEEEEEEEECC-----C---C-EEEEEEEECCCCCCCCEEEEEEC-CCCC
T ss_conf             999966885267654444---65412221057999996258-----9---7-79999975898999967999986-8986


Q ss_pred             CCC
Q ss_conf             311
Q gi|255764460|r  277 SFF  279 (363)
Q Consensus       277 ~~~  279 (363)
                      ...
T Consensus       221 ~~v  223 (224)
T PRK09361        221 EDV  223 (224)
T ss_pred             CCC
T ss_conf             457


No 13 
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00  E-value=4.7e-41  Score=279.22  Aligned_cols=213  Identities=28%  Similarity=0.453  Sum_probs=176.3

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH------CCCEEEEEECCCCCCHHHH----HHHCC
Q ss_conf             1477278999723897268807999706872378999999875200------8987999973885566889----98198
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFVDAEHALDSIYA----RKLGV  117 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk------~g~~~~~iD~E~~~~~~~a----~~~Gv  117 (363)
                      ||||+..||.+|| ||+|.|+||||+|+|+||||+|||++++++|.      .++.|+|||+|++|+++++    ++.+.
T Consensus         1 isTG~~~lD~~L~-GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~Rl~qia~~~~~   79 (235)
T cd01123           1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL   79 (235)
T ss_pred             CCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             9888578996507-996478799999999984999999999998424753678962999953677588999999997134


Q ss_pred             CH----HHEEEEECCCHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             83----344897258489999999999----7448976899814333220265543455530224788876776777764
Q gi|255764460|r  118 DL----KNLLISQPDTGEQALEITDML----VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS  189 (363)
Q Consensus       118 d~----~~l~~~~~~~~E~~~~i~~~l----i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~  189 (363)
                      ++    +++.++++.+.++.+++++.+    .+...+.||||||+++++ +.|+++.   ...+.+++.+.+.++.|...
T Consensus        80 ~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia~l~-r~e~~~~---~~~~~r~~~l~~~~~~L~~l  155 (235)
T cd01123          80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALF-RAEFDGR---GELAERQQHLAKLLRTLKRL  155 (235)
T ss_pred             CHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHH-HHHHCCC---CCHHHHHHHHHHHHHHHHHH
T ss_conf             7245422547963799999999999999987303772399996104555-6664488---64478999999999999999


Q ss_pred             HCCCCCEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEE
Q ss_conf             201781899986341145665---46651256553111111248975045534457724767999877405778985158
Q gi|255764460|r  190 ISRSKCILVFINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV  266 (363)
Q Consensus       190 ~~k~~~~~i~iNQ~r~~ig~m---~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a  266 (363)
                      +.++++++++|||++++++.+   ++++.++.||++|.|++++||.+.|.+         |..=.++++||+..||. .+
T Consensus       156 A~~~~~aVvvtNqvt~~~~~~~~~~~~~~~palG~~w~h~v~~rl~l~~~~---------~~~R~l~v~ks~~~p~~-~~  225 (235)
T cd01123         156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR---------GEERIAKIVDSPHLPEG-EA  225 (235)
T ss_pred             HHHCCCEEEEECEEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEECC---------CCEEEEEEEECCCCCCE-EE
T ss_conf             998097999968065506764245788643450266785385999999479---------97189999868999981-79


Q ss_pred             EEEEECCCCC
Q ss_conf             9998618742
Q gi|255764460|r  267 EFDIMYGEGI  276 (363)
Q Consensus       267 ~~~i~fg~GI  276 (363)
                      .|.|. +.||
T Consensus       226 ~f~It-~~Gi  234 (235)
T cd01123         226 VFAIT-EEGI  234 (235)
T ss_pred             EEEEE-CCCC
T ss_conf             99982-8857


No 14 
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00  E-value=3.1e-40  Score=274.01  Aligned_cols=211  Identities=25%  Similarity=0.413  Sum_probs=170.8

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCH----HHEE
Q ss_conf             147727899972389726880799970687237899999987520089879999738855668899819883----3448
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL----KNLL  123 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~----~~l~  123 (363)
                      ||||+..||.+|| ||+|+|++|||+|+|++||||||||+++++++.|+.|+|||+|+++...+.+..+.++    ++++
T Consensus         1 IsTG~~~lD~vLg-GGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~   79 (218)
T cd01394           1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII   79 (218)
T ss_pred             CCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             9988078999856-998788799998999984999999999998636986999966556769999998753666530514


Q ss_pred             EEECCCHHHHHHHH---HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             97258489999999---999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r  124 ISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI  200 (363)
Q Consensus       124 ~~~~~~~E~~~~i~---~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i  200 (363)
                      +.+|.+.++...++   +.+.++ .+++|||||+.+++ +.|+++..   ....+.|.+++.+++|...+.++++++|+|
T Consensus        80 v~~~~~~~~~~~~i~~~~~~~~~-~~~lvViDSi~tl~-~~e~~~~~---~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~  154 (218)
T cd01394          80 VFEPMDFNEQGRAIQETETFADE-KVDLVVVDSATALY-RLELGDDD---TTIKNYRELAKQLTFLLWLARKHDVAVVIT  154 (218)
T ss_pred             EECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHH-HHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             62678768899999999976414-77299991404554-55406896---479999999999999999987669889999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCC
Q ss_conf             63411456654665125655311111124897504553445772476799987740577898515899986187423
Q gi|255764460|r  201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS  277 (363)
Q Consensus       201 NQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~  277 (363)
                      ||++.+++.+++.   +.||++|+|++++||++.+...        +.+ .++++|||+.|+...+.|.|. ++||.
T Consensus       155 nqVt~~~~~~~~~---p~GG~~LeH~vd~vl~~e~~~~--------~~R-~~~~~Knr~gp~~e~~~F~mt-~~Gle  218 (218)
T cd01394         155 NQVYSDVGSGSVR---PLGGHTLEHWSKVILRLEKLRV--------GTR-RAVLEKHRFRPEGSSVYFRIT-DKGIE  218 (218)
T ss_pred             EEEEEECCCCCCC---CCCCHHHHHHCCEEEEEECCCC--------CEE-EEEEEECCCCCCCCEEEEEEC-CCCCC
T ss_conf             2158845777565---5672041411028999984889--------679-999975899998868999972-88879


No 15 
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940    This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=100.00  E-value=8.8e-38  Score=258.51  Aligned_cols=237  Identities=28%  Similarity=0.414  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-
Q ss_conf             9999999998676188737970366553346550147727899972389726880799970687237899999987520-
Q gi|255764460|r   14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-   92 (363)
Q Consensus        14 ~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-   92 (363)
                      |..+.|-+-++-.|-.     ..+....++.|-.|+|||..||.+|| ||+..-.|||+||++.||||++|+.+|..+| 
T Consensus        49 Ki~EaA~K~~~~~f~t-----a~~~~~~R~~V~~i~TGs~~~d~~LG-GGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQL  122 (314)
T TIGR02238        49 KIKEAASKIINVGFIT-----AVEILDKRKKVLKISTGSKALDKILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQL  122 (314)
T ss_pred             HHHHHHHHHHHCCCCC-----HHHHHHHCCEEEEEECCHHHHHHHCC-CCEEEEEHEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9999998764146640-----57887406246776231588743407-87000000000045567714655566553206


Q ss_pred             -----HCCCEEEEEECCCCCCHHH----HHHHCCC----HHHEEEEECCCHHHHHHHHHH----HHHCCCCCEEEEECCC
Q ss_conf             -----0898799997388556688----9981988----334489725848999999999----9744897689981433
Q gi|255764460|r   93 -----KTGGTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM----LVRSGAVDIIVIDSVA  155 (363)
Q Consensus        93 -----k~g~~~~~iD~E~~~~~~~----a~~~Gvd----~~~l~~~~~~~~E~~~~i~~~----li~~~~~~liViDSi~  155 (363)
                           -..|+++|||||++|+|++    |+++|||    ++|++|++.-+.|+.++++..    +..++.+.|+|||||-
T Consensus       123 P~~~~g~~GKv~yIDTEgTFRPdri~~IAerf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivDSI~  202 (314)
T TIGR02238       123 PREMGGGEGKVAYIDTEGTFRPDRIKAIAERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVDSIM  202 (314)
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf             31257998428998178885817899887540789889998889887504278999999998875226871688642025


Q ss_pred             CCCCHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CC-CCCCCCCCCCCCCCCCCEE
Q ss_conf             3220265543--45553022478887677677776420178189998634114566--54-6651256553111111248
Q gi|255764460|r  156 ALTPRAEIEG--DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV--MF-GSPETTTGGNALKFYSSVR  230 (363)
Q Consensus       156 al~p~~Eie~--~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~--m~-g~p~~~~GG~al~~~aS~r  230 (363)
                      ||. |.++-|  ++.+    +|.+| ++.|.+|..+...+|+++++|||+.++||+  || .+|.+|.||+.|.|+|++|
T Consensus       203 alF-RVDfsGRGELse----RQQKL-~~~l~~L~~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~GGHvlaHAs~~R  276 (314)
T TIGR02238       203 ALF-RVDFSGRGELSE----RQQKL-AQMLSRLNKLSEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASATR  276 (314)
T ss_pred             HHH-CCCCCCCCCCHH----HHHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             541-312125764027----88999-999999876546640232001122008873000000788871502577789988


Q ss_pred             EEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf             975045534457724767999877405778985158999861
Q gi|255764460|r  231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY  272 (363)
Q Consensus       231 l~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~f  272 (363)
                      |.+||. +        |..=-+|+.-+.= -|-.+|.|.|.-
T Consensus       277 ~~lRKG-r--------g~~RvaK~~DsP~-~pE~E~~f~i~~  308 (314)
T TIGR02238       277 LLLRKG-R--------GDERVAKLYDSPD-LPEAEASFQITE  308 (314)
T ss_pred             HHHHCC-C--------CCCCEEEECCCCC-CCCCCCEEEECC
T ss_conf             864158-8--------6551673016887-722141467648


No 16 
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939    This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00  E-value=1.4e-34  Score=238.27  Aligned_cols=205  Identities=26%  Similarity=0.405  Sum_probs=167.8

Q ss_pred             HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH----CCCHH----HEEEEE
Q ss_conf             9997238972688079997068723789999998752008987999973885566889981----98833----448972
Q gi|255764460|r   55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL----GVDLK----NLLISQ  126 (363)
Q Consensus        55 lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~----Gvd~~----~l~~~~  126 (363)
                      ||.+|| ||+.+|-||+|||||+||||++||.++.++..+|..|+|||||+.|++|+.+++    |+|++    ++++++
T Consensus         1 iD~LLg-GGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~   79 (223)
T TIGR02237         1 IDELLG-GGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFE   79 (223)
T ss_pred             CCCCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEEC
T ss_conf             952205-8512035889875899867899999999998618958999628983289999986305889888841535523


Q ss_pred             CCC-HHH--HHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             584-899--999999997448--976899814333220265543455530224788876776777764201781899986
Q gi|255764460|r  127 PDT-GEQ--ALEITDMLVRSG--AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN  201 (363)
Q Consensus       127 ~~~-~E~--~~~i~~~li~~~--~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iN  201 (363)
                      |.. -||  ++.-...++++.  ..+|||+||+++++ |.|..++-+  .....-+-+.+.|..|..++.|+|.++|+||
T Consensus        80 ~~~f~eQ~~ai~~~~~~~~~~G~~~~LvVvDs~t~~Y-Rle~~~d~n--k~~~~~~~l~~Ql~~Ll~lArk~~~AVviTN  156 (223)
T TIGR02237        80 VFDFDEQEVAIQKTSKLIDRDGDKADLVVVDSFTALY-RLERSDDRN--KQISLNRELARQLTLLLSLARKKDLAVVITN  156 (223)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHH-HHCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             5356789999999999986068833148881533454-202578602--5679999999999999999876499789971


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             3411456654665125655311111124897504553445772476799987740577898515899986
Q gi|255764460|r  202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM  271 (363)
Q Consensus       202 Q~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~  271 (363)
                      |+|.+++.---+.-.|.||.-|.|++-+.+++-|...       .|.+ ++.+.|-|..|....|.|.|.
T Consensus       157 Qvy~d~~~gG~~~~~P~GG~~L~h~~K~i~rLE~~~r-------~G~R-~a~L~kHR~~~EG~~v~FrIt  218 (223)
T TIGR02237       157 QVYTDVNNGGSETLRPLGGHLLEHWSKVILRLEKLNR-------VGRR-KATLEKHRSRKEGESVKFRIT  218 (223)
T ss_pred             EEEEEECCCCCCEEEECCCHHHHHHHCEEEEEECCCC-------CCCE-EEEEEECCCCCCCCEEEEEEE
T ss_conf             1588637797320100331134311021335644789-------8742-456654055789975789982


No 17 
>KOG1434 consensus
Probab=100.00  E-value=1.4e-33  Score=231.97  Aligned_cols=225  Identities=27%  Similarity=0.401  Sum_probs=176.1

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH------CCCEEEEEECCCCCCHHH
Q ss_conf             65533465501477278999723897268807999706872378999999875200------898799997388556688
Q gi|255764460|r   38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFVDAEHALDSIY  111 (363)
Q Consensus        38 ~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk------~g~~~~~iD~E~~~~~~~  111 (363)
                      -...++.+.+|+|||.+||.+|| ||+|...||||+|++++|||+++++++.++|=      .+|+++|||||++|.|++
T Consensus        87 ~le~r~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdR  165 (335)
T KOG1434          87 LLEQRKTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDR  165 (335)
T ss_pred             HHHHHHCCCEEECCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHCCCCCEEEEEECCCCCCHHH
T ss_conf             98665024546325677765624-88531026877078776701023589997656432188774289992588614589


Q ss_pred             ----HHHHCCCH----HHEEEEECCCHHHHHHHHHHH---H-HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf             ----99819883----344897258489999999999---7-44897689981433322026554345553022478887
Q gi|255764460|r  112 ----ARKLGVDL----KNLLISQPDTGEQALEITDML---V-RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM  179 (363)
Q Consensus       112 ----a~~~Gvd~----~~l~~~~~~~~E~~~~i~~~l---i-~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~m  179 (363)
                          |+++++|+    +|++|+++-+.|+.++.+..|   + +.+.+.|+||||+.++. |.++++. +  -...+.|.+
T Consensus       166 i~~IAe~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-g--eLseRqqkL  241 (335)
T KOG1434         166 IKDIAERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-G--ELSERQQKL  241 (335)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECEEHHE-EECCCCC-C--CHHHHHHHH
T ss_conf             99999874889889887778877728699999999988887444857999980000030-2145664-3--088999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCC-CCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             677677776420178189998634114566--5466-5125655311111124897504553445772476799987740
Q gi|255764460|r  180 SQALRKLTSSISRSKCILVFINQMRMKIGV--MFGS-PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK  256 (363)
Q Consensus       180 s~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~--m~g~-p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~K  256 (363)
                      ++.+.++..+..++|.+++.+||+..++|.  +|.+ +.++.||..|.|+|.+||-+++..         |-.--+++-|
T Consensus       242 n~ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgr---------g~eR~Akl~d  312 (335)
T KOG1434         242 NQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGR---------GDERVAKLYD  312 (335)
T ss_pred             HHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEECCC---------CCEEEEECCC
T ss_conf             9999999999875227999841111487633222334447544413431001369987078---------6402454126


Q ss_pred             CCCCCCCCEEEEEEECCCCCCC
Q ss_conf             5778985158999861874231
Q gi|255764460|r  257 NKMASPFKQVEFDIMYGEGISF  278 (363)
Q Consensus       257 nk~~~P~~~a~~~i~fg~GI~~  278 (363)
                      +.-- |-.+|.|-|. -+||..
T Consensus       313 SP~m-pe~e~~y~It-~~Gi~d  332 (335)
T KOG1434         313 SPSM-PEAEASYVIT-PGGIRD  332 (335)
T ss_pred             CCCC-CCCEEEEEEC-CCCCCC
T ss_conf             9988-7635899974-776556


No 18 
>TIGR02239 recomb_RAD51 DNA repair protein RAD51; InterPro: IPR011941   Homologous recombination is an evolutionarily conserved mechanism for the repair of double-strand breaks in DNA and the generation of genetic diversity. The primary function of homologous recombination in mitotic cells is to repair double-strand breaks or single-strand gaps that form as a result of replication fork collapse, from processing of spontaneous damage, and from exposure to DNA-damaging agents. During meiosis, homologous recombination is essential to establish a physical connection between homologous chromosomes to ensure their correct disjunction at the first meiotic division. In addition, the high frequency of meiotic recombination contributes to diversity by creating new linkage arrangements between genes, or parts of genes .   The central step of homologous recombination is synapsis, the process of bringing together the two homologous strands. Rad51, a eukaryotic homologue of the prokaryotic recombinase RecA, mediates this process in eukaryotes . Firstly a single-stranded DNA tail is coated by ATP-bound Rad51 to yield a nucleoprotein filament. This filament then searches for a homologous sequence within double-stranded DNA, and catalyses the exchange of strands between the single-stranded and double-stranded DNA substrates. The original broken end of the resulting branched DNA is now aligned with an appropriate matching sequence in an intact duplex, and is further processed by other enzymes .   Rad51 contains an N-terminal alpha-helical DNA binding domain not found in RecA, and a RecA-like C-terminal ATPase domain , . The active form of this protein is a long helical filament where the catalytically active unit is a homodimer . ; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair.
Probab=99.94  E-value=4.9e-27  Score=190.52  Aligned_cols=226  Identities=23%  Similarity=0.333  Sum_probs=174.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH----C--CCEEEEEECCCCCCHH
Q ss_conf             665533465501477278999723897268807999706872378999999875200----8--9879999738855668
Q gi|255764460|r   37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----T--GGTCAFVDAEHALDSI  110 (363)
Q Consensus        37 ~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk----~--g~~~~~iD~E~~~~~~  110 (363)
                      .....+..+-.++|||..||.+|+ ||+..|.|||+||++.+|||++|..++..||=    .  .|.++|||+|++|.|+
T Consensus        67 ~~~~~r~~~~~~~~Gs~~ld~~l~-GG~e~Gsite~fGefr~Gk~q~Cht~~vtCql~~~~~G~~G~~lyid~e~tfr~~  145 (317)
T TIGR02239        67 ELHKKRKEVIQLTTGSKELDKLLE-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVDQGGGEGKALYIDTEGTFRPE  145 (317)
T ss_pred             HHHHHHHHHEECCCCHHHHHHHHC-CCCCCCCHHHHHCCCCCCCHHHHHHEEEEEEECCCCCCCCCCEEEEECCCCCCHH
T ss_conf             999877654121035068999860-8755450322110001662022100113453012367876316887256531068


Q ss_pred             H----HHHHCCCH----HHEEEEECCCHHH---HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf             8----99819883----3448972584899---99999999744897689981433322026554345553022478887
Q gi|255764460|r  111 Y----ARKLGVDL----KNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM  179 (363)
Q Consensus       111 ~----a~~~Gvd~----~~l~~~~~~~~E~---~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~m  179 (363)
                      +    |++++++.    +++-|++..+.++   .+.-+..++.+..+.++||||..+|+ |.++.+.-   -...+...|
T Consensus       146 rl~~~a~r~~l~~~~~l~nv~~ara~n~d~q~~ll~~a~~~~~~~~~~l~~vds~~aly-r~d~~Grg---el~~rq~~l  221 (317)
T TIGR02239       146 RLLAIAERYGLNGEDVLDNVAYARAYNTDHQLKLLLQAAALMAESRYALLIVDSATALY-RTDYSGRG---ELSARQMHL  221 (317)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH-HCCCCCCH---HHHHHHHHH
T ss_conf             99999986268877888887887650416899999999998862772145113356776-30355504---588999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCC----CC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf             677677776420178189998634114566----54-6651256553111111248975045534457724767999877
Q gi|255764460|r  180 SQALRKLTSSISRSKCILVFINQMRMKIGV----MF-GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV  254 (363)
Q Consensus       180 s~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~----m~-g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv  254 (363)
                      .+|||.|..+...++++++++||+-.++..    || +++.++.||+.+.|.+.+||.+++. .        |..--+++
T Consensus       222 ~~flr~l~~la~~f~vav~~tnqv~~~~dG~~~~~~~~~~~kPiGG~i~ah~s~trl~l~kG-~--------G~~r~~k~  292 (317)
T TIGR02239       222 AKFLRSLQRLADEFGVAVVITNQVVAQVDGAASAMFAADAKKPIGGNIMAHASTTRLSLRKG-R--------GEQRICKI  292 (317)
T ss_pred             HHHHHHHHHHHHHCCEEEEEECHHHHCCCCCHHHHHCCCCCCCCCCCEEEECCCEEEEEECC-C--------CCCEEEEE
T ss_conf             99999999888634546897420010035402344314456886751232010002344417-7--------73102323


Q ss_pred             EECCCCCCCCEEEEEEECCCCCCC
Q ss_conf             405778985158999861874231
Q gi|255764460|r  255 VKNKMASPFKQVEFDIMYGEGISF  278 (363)
Q Consensus       255 ~Knk~~~P~~~a~~~i~fg~GI~~  278 (363)
                      ..+..-| ..++.|.| ...||..
T Consensus       293 ~~sP~l~-~~~~~f~i-~~~G~~d  314 (317)
T TIGR02239       293 YDSPCLP-ESEAVFAI-AEDGIGD  314 (317)
T ss_pred             ECCCCCC-CHHHHHHH-HHHCCCC
T ss_conf             1067752-01344433-4421122


No 19 
>KOG1564 consensus
Probab=99.93  E-value=9.4e-25  Score=176.11  Aligned_cols=219  Identities=26%  Similarity=0.345  Sum_probs=163.1

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH------HCCCEEEEEECCCCCCHHHHHHH----
Q ss_conf             50147727899972389726880799970687237899999987520------08987999973885566889981----
Q gi|255764460|r   46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL----  115 (363)
Q Consensus        46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q------k~g~~~~~iD~E~~~~~~~a~~~----  115 (363)
                      ..++||...||..|+ ||+|.+.||||+|++|+|||+||||++--+|      -.|+.|+||-||..|...+..++    
T Consensus        82 ~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~  160 (351)
T KOG1564          82 SKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTL  160 (351)
T ss_pred             HHCCCCCHHHHHHHC-CCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             011045588888744-9933454888860257758899999998860855108977743999768887477899999855


Q ss_pred             ---------CCCH----HHEEEEECCCHHHHHHHHHH----HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf             ---------9883----34489725848999999999----974489768998143332202655434555302247888
Q gi|255764460|r  116 ---------GVDL----KNLLISQPDTGEQALEITDM----LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL  178 (363)
Q Consensus       116 ---------Gvd~----~~l~~~~~~~~E~~~~i~~~----li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~  178 (363)
                               +.-.    |++++.....++..++|+..    |...+.+.|||||||+|+. |.|++-.-.|.+  .++|.
T Consensus       161 ~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~--~r~~~  237 (351)
T KOG1564         161 PQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLK--KRARH  237 (351)
T ss_pred             CCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCEECCCCCEEEEEEHHHHHH-HHHHCCCHHHHH--HHHHH
T ss_conf             047994344342169776479873353356899886642310115730089971205777-877325722325--67889


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCC-------CCCCCCC--------CCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             76776777764201781899986341145-------6654665--------12565531111112489750455344577
Q gi|255764460|r  179 MSQALRKLTSSISRSKCILVFINQMRMKI-------GVMFGSP--------ETTTGGNALKFYSSVRLDIRRVGSIKDKD  243 (363)
Q Consensus       179 ms~~lrkl~~~~~k~~~~~i~iNQ~r~~i-------g~m~g~p--------~~~~GG~al~~~aS~rl~i~k~~~ik~~~  243 (363)
                      |-+.--+|..++.+++++++++|||.+.+       |..++|-        .+++=|-.|...-|+|+.+.|..  |..+
T Consensus       238 l~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~--k~~~  315 (351)
T KOG1564         238 LFRLAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRST--KNCD  315 (351)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCEEEEEEECC--CCCC
T ss_conf             99999999998875286289841114454345666774332112100236222542100121210146665034--5664


Q ss_pred             EEE-E-EEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             247-6-799987740577898515899986
Q gi|255764460|r  244 SIT-G-NQTRVKVVKNKMASPFKQVEFDIM  271 (363)
Q Consensus       244 ~~i-G-~~v~~kv~Knk~~~P~~~a~~~i~  271 (363)
                      ... + ..-+.+|+-+...|| ..|+|-|.
T Consensus       316 sa~~~~~~R~l~VvySp~~p~-~~~~~~It  344 (351)
T KOG1564         316 SAVSRSAKRTLRVVYSPYLPP-SSCEFMIT  344 (351)
T ss_pred             CHHHCCCCEEEEEEECCCCCC-CCEEEEEE
T ss_conf             101026543799995688998-63489974


No 20 
>KOG1433 consensus
Probab=99.91  E-value=1.3e-26  Score=187.89  Aligned_cols=315  Identities=21%  Similarity=0.189  Sum_probs=257.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf             41676999999999998676188737970366553346550147727899972389726880799970687237899999
Q gi|255764460|r    7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH   86 (363)
Q Consensus         7 ~~~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~   86 (363)
                      |..+.++..++.+|.+++--|+ ...+.+ ........+..++++.+..+..|+.+|.|.++.++.+++..+||++.+++
T Consensus         1 ~~~~~~~~~~~~al~~~~~~~~-~~~~~~-~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~   78 (326)
T KOG1433           1 MRMSQKRLALQKALEEIGLSPA-PVRFLL-AGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLH   78 (326)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCC-CHHHHH-CCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHEEEECHHHCCCHHHHHH
T ss_conf             9446788876788885237742-234562-15666777654143524788501457604443200001220010899999


Q ss_pred             HHHH-HHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHH-HCCCCCEEEEECCC--CCCCHHH
Q ss_conf             9875-200898799997388556688998198833448972584899999999997-44897689981433--3220265
Q gi|255764460|r   87 TIAQ-SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV-RSGAVDIIVIDSVA--ALTPRAE  162 (363)
Q Consensus        87 ~~a~-~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li-~~~~~~liViDSi~--al~p~~E  162 (363)
                      .+.. +|+.+..+.+++.++++|+-....++++.-..+|.+|.+++.+|.+...+. ..+..++++|||.+  ++.|..+
T Consensus        79 ~~~~~~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~  158 (326)
T KOG1433          79 KLVPMLQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTE  158 (326)
T ss_pred             HHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCHHHH
T ss_conf             85189986167625415505566774267555835688558984477888899887068751189995211103321135


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             543455530224788876776777764201781899986341145---66546651256553111111248975045534
Q gi|255764460|r  163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSI  239 (363)
Q Consensus       163 ie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~i---g~m~g~p~~~~GG~al~~~aS~rl~i~k~~~i  239 (363)
                      ++..++......++++|....++..+.+.....+.+++||.|...   +.+.+...++.+| +..|+++.++-.+..+.+
T Consensus       159 ia~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l  237 (326)
T KOG1433         159 IAGRSGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSL  237 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf             6666303067788888999998566677779999998620311699941345411331066-521578899999999999


Q ss_pred             CCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHH
Q ss_conf             45772476799987740577898515899986187423111599999732862302744788894503038999999866
Q gi|255764460|r  240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE  319 (363)
Q Consensus       240 k~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~e  319 (363)
                      +...+..|..+   |++|++.+|+..+   +.|+.  +....+++....|.++++.|.|| ++++.. ++|.....++.+
T Consensus       238 ~~la~~~g~~v---vitn~v~~~~d~~---~~f~~--~~~~~~~~~~~~H~~~tr~~~~~-~~g~~~-~~k~~~s~~l~e  307 (326)
T KOG1433         238 KKLADEFGVAV---VITNQVTAQVDGA---IMFGS--DPKKPIGGNIWAHAVTTRLGLRK-GKGERR-ICKIADSPCLPE  307 (326)
T ss_pred             HHHHHHCCCEE---EEECCCCCCCCCC---CCCCC--CCCCCCCCCHHHHHHHHHHHHHH-CCCCCC-HHHHHCCCCCCC
T ss_conf             88888618617---9862202345665---33476--65353554067889999999984-365100-135542788995


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             799999999999998
Q gi|255764460|r  320 NIEIAENIESLLRQN  334 (363)
Q Consensus       320 np~l~~~i~~~ire~  334 (363)
                      ++...+.++..+++.
T Consensus       308 ~~~~~~i~~~g~~~~  322 (326)
T KOG1433         308 AEAVFAITEDGISDQ  322 (326)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             055688876513125


No 21 
>PRK04328 hypothetical protein; Provisional
Probab=99.90  E-value=1.6e-21  Score=155.72  Aligned_cols=209  Identities=19%  Similarity=0.299  Sum_probs=147.4

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH-
Q ss_conf             55014772789997238972688079997068723789999998752008987999973885566--889981988334-
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN-  121 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~-  121 (363)
                      ++++|||+..||.+|+ ||+|+|+++.|+|+|+||||+||+|++.+..+.|..|+|+..|.+-+.  ..++++|.|+++ 
T Consensus         3 ~eRv~TGI~gLD~lL~-GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~l~~~~~~~G~d~~~~   81 (250)
T PRK04328          3 VKRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKY   81 (250)
T ss_pred             CCEECCCCHHHHHHCC-CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHH
T ss_conf             4110358566787515-998799699998289999899999999999876997799997279999999999809986898


Q ss_pred             -----EEEE-------------------ECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             -----4897-------------------2584899999999997448976899814333220265543455530224788
Q gi|255764460|r  122 -----LLIS-------------------QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR  177 (363)
Q Consensus       122 -----l~~~-------------------~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar  177 (363)
                           +.+.                   .|+..++.++.+...+++...+.+||||++++.    +...       ..+ 
T Consensus        82 ~~~g~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~rvVIDSit~l~----~~~~-------~~~-  149 (250)
T PRK04328         82 EEEGKFAIVDAFTGGIGEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAKRVVIDSVSTLY----LTKP-------AVA-  149 (250)
T ss_pred             HHCCCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH----HCCH-------HHH-
T ss_conf             6569779985123333420000010136853599999999999985189889993707877----4585-------889-


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf             87677677776420178189998634114566546651256553111111248975045534457724767999877405
Q gi|255764460|r  178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN  257 (363)
Q Consensus       178 ~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Kn  257 (363)
                        .+++..+...+...+|+.++|.++...-.        .-++.++.|.++-.|.++....   .++   .+=...|+|.
T Consensus       150 --r~~l~~l~~~l~~~g~Ttll~~e~~~~~~--------~~~~~~ve~~~DgvI~L~~~~~---~~~---~~R~l~I~Km  213 (250)
T PRK04328        150 --RSIVMQLKRVLAGLGCTSIFVSQVSVGER--------GFGGPGVEHAVDGIIRLDLDEI---DGE---LKRSLIVWKM  213 (250)
T ss_pred             --HHHHHHHHHHHHHCCCEEEEEECCCCCCC--------CCCCCCEEEEEEEEEEEEEECC---CCE---EEEEEEEEEC
T ss_conf             --99999999999868986999971003656--------6677865899989999888713---997---9999999988


Q ss_pred             CCCCCCCE-EEEEEECCCCCCCCCHHH
Q ss_conf             77898515-899986187423111599
Q gi|255764460|r  258 KMASPFKQ-VEFDIMYGEGISFFGELI  283 (363)
Q Consensus       258 k~~~P~~~-a~~~i~fg~GI~~~~~ll  283 (363)
                      |-++.-+. -+|.|. ++||..+-.-+
T Consensus       214 Rgs~h~~~~~~f~It-~~GI~V~P~~~  239 (250)
T PRK04328        214 RGTKHSMRRHPFEIT-DKGIVVYPDKV  239 (250)
T ss_pred             CCCCCCCCEEEEEEC-CCCEEEECCHH
T ss_conf             699658956999987-99689954413


No 22 
>KOG1433 consensus
Probab=99.90  E-value=1.2e-23  Score=169.06  Aligned_cols=205  Identities=26%  Similarity=0.458  Sum_probs=158.6

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH----HHHHHHCCC
Q ss_conf             4655014772789997238972688079997068723789999998752008987999973885566----889981988
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS----IYARKLGVD  118 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~----~~a~~~Gvd  118 (363)
                      .....++||+.+||.+|+ ||+|.|.+|||+|||+||||+||+.++..+.-..+.++|||+|.+|.+    +.+.+.|.+
T Consensus        88 ~~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~  166 (326)
T KOG1433          88 SELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLR  166 (326)
T ss_pred             CCCEEECCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCHHHHHHHHHHHH
T ss_conf             676254155055667742-6755583568855898447788889988706875118999521110332113566663030


Q ss_pred             HH----HEEEEECCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHH
Q ss_conf             33----448972584899999---99999744897689981433322026554345553022478--8876776777764
Q gi|255764460|r  119 LK----NLLISQPDTGEQALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA--RLMSQALRKLTSS  189 (363)
Q Consensus       119 ~~----~l~~~~~~~~E~~~~---i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~a--r~ms~~lrkl~~~  189 (363)
                      ..    ++.+.+..+.++.+.   .+...+.+....++++||..+++ +.+.-+     .....|  ++++++++.+...
T Consensus       167 ~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-----~~~~~a~~~~~~~~~~~l~~l  240 (326)
T KOG1433         167 GRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-----RGELSARQMLLAKFLRSLKKL  240 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCC-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf             67788888999998566677779999998620311699941345411-331066-----521578899999999999888


Q ss_pred             HCCCCCEEEEEECCCCCCC--CCCCC-CCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCC
Q ss_conf             2017818999863411456--65466-51256553111111248975045534457724767999877405778985
Q gi|255764460|r  190 ISRSKCILVFINQMRMKIG--VMFGS-PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF  263 (363)
Q Consensus       190 ~~k~~~~~i~iNQ~r~~ig--~m~g~-p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~  263 (363)
                      ..+++..+|++||+.....  .||+. +.++.||+.+.|...+|+.+++. .        |-+-.+|+.++++.|++
T Consensus       241 a~~~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~-~--------g~~~~~k~~~s~~l~e~  308 (326)
T KOG1433         241 ADEFGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKG-K--------GERRICKIADSPCLPEA  308 (326)
T ss_pred             HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-C--------CCCCHHHHHCCCCCCCC
T ss_conf             88618617986220234566533476653535540678899999999843-6--------51001355427889950


No 23 
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.89  E-value=2.4e-21  Score=154.55  Aligned_cols=211  Identities=25%  Similarity=0.370  Sum_probs=160.5

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHHCCCHH
Q ss_conf             465501477278999723897268807999706872378999999875200898799997388556--688998198833
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKLGVDLK  120 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~Gvd~~  120 (363)
                      ...++++||...||..|| ||+-+|.++.+.|+|+.|||||.||+++...+.++.|+|+..|.+..  ..+|+++|+..+
T Consensus        59 ~~~~R~~Tgi~ElDRVLG-GGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~  137 (372)
T cd01121          59 EEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTE  137 (372)
T ss_pred             CCCCCCCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf             655544478366654005-7730671799825998868899999999998639938998245678999989998587887


Q ss_pred             HEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             44897258489999999999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r  121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI  200 (363)
Q Consensus       121 ~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i  200 (363)
                      ++++....+.|..++.++.    ...+++|||||-.+.. .++++..|.  + .|-|-.+.   .|+..+.+++++++++
T Consensus       138 ~l~l~set~le~Il~~i~~----~kP~~lIIDSIQT~~~-~~~~s~pGs--v-sQVReca~---~L~~~AK~~~i~~~lV  206 (372)
T cd01121         138 NLYLLAETNLEDILASIEE----LKPDLVIIDSIQTVYS-SELTSAPGS--V-SQVRECTA---ELMRFAKERNIPIFIV  206 (372)
T ss_pred             CCEEEECCCHHHHHHHHHH----HCCCEEEEECHHHCCC-CCCCCCCCC--H-HHHHHHHH---HHHHHHHHCCCEEEEE
T ss_conf             7278843569999999997----1998899956220203-776779987--8-99999999---9999998619739999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCCCCEEEEEEECCCC---C
Q ss_conf             634114566546651256553111111248975045534457724767999-877405778985158999861874---2
Q gi|255764460|r  201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASPFKQVEFDIMYGEG---I  276 (363)
Q Consensus       201 NQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P~~~a~~~i~fg~G---I  276 (363)
                      -|+.-+ |..       .|=+.|.|.-++.|.+....         .+..| .+.+|||++|-....-|.+. +.|   |
T Consensus       207 GHVTK~-G~i-------AGPkvLEHmVDtVl~fEgd~---------~~~~R~LR~~KNRFG~t~EiGvFeM~-~~GL~~V  268 (372)
T cd01121         207 GHVTKE-GSI-------AGPKVLEHMVDTVLYFEGDR---------HSEYRILRSVKNRFGSTNELGVFEMR-ENGLREV  268 (372)
T ss_pred             EEECCC-CCC-------CCCHHHEEEEEEEEEECCCC---------CCCEEEEEEECCCCCCCCEEEEEEEC-CCCCEEC
T ss_conf             876268-863-------77403100213688751577---------65503567411567775405888731-6870563


Q ss_pred             CCCCHHH
Q ss_conf             3111599
Q gi|255764460|r  277 SFFGELI  283 (363)
Q Consensus       277 ~~~~~ll  283 (363)
                      ++-++++
T Consensus       269 ~nPS~~F  275 (372)
T cd01121         269 SNPSELF  275 (372)
T ss_pred             CCHHHHH
T ss_conf             6856988


No 24 
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.88  E-value=1e-20  Score=150.54  Aligned_cols=203  Identities=25%  Similarity=0.354  Sum_probs=138.5

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH---
Q ss_conf             1477278999723897268807999706872378999999875-2008987999973885566--889981988334---
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDS--IYARKLGVDLKN---  121 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~---  121 (363)
                      ||||+..||.+|| ||+|+|+++.|+|+|+||||+||+|++++ +.+.|..|+||.+|.+-+.  ..++.+|.|.++   
T Consensus         1 i~TGi~~LD~~l~-GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~   79 (231)
T pfam06745         1 VKTGIPGLDEILK-GGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEE   79 (231)
T ss_pred             CCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             9889556886316-998299699998589725999999999999986589689998137999999999982998589864


Q ss_pred             ---EEEEE--C-----------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             ---48972--5-----------8489999999999744897689981433322026554345553022478887677677
Q gi|255764460|r  122 ---LLISQ--P-----------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK  185 (363)
Q Consensus       122 ---l~~~~--~-----------~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk  185 (363)
                         +.+..  +           ...++.++.+...+++...+.+||||+.++.-..  +    +    .+.   -.+++.
T Consensus        80 ~g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~--~----~----~~~---r~~l~~  146 (231)
T pfam06745        80 EGKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLL--K----P----AMA---REILRR  146 (231)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC--C----H----HHH---HHHHHH
T ss_conf             69678986254422210011227999999999999997199889997641640058--8----9----999---999999


Q ss_pred             HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCC-
Q ss_conf             776420178189998634114566546651256553111-111248975045534457724767999877405778985-
Q gi|255764460|r  186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK-FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF-  263 (363)
Q Consensus       186 l~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~-~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~-  263 (363)
                      +...+.+.++++++|++.....+        ...+.++. |.++..|.++....   ++   ...=...|.|.|-++.- 
T Consensus       147 l~~~lk~~g~t~l~t~e~~~~~~--------~~~~~~~~~~l~D~vI~L~~~~~---~~---~~~R~l~I~K~Rg~~~~~  212 (231)
T pfam06745       147 LKRVLKKLGVTAIFTSEKPSGEG--------GIGGYGVEEFVVDGVIRLDLKEI---EG---ELVRTIEIVKMRGTPHSM  212 (231)
T ss_pred             HHHHHHHCCCEEEEEEEECCCCC--------CCCCCCHHHHEEEEEEEEEEECC---CC---EEEEEEEEEECCCCCCCC
T ss_conf             99999976991999982125777--------65676301110036999998824---99---899999999866998789


Q ss_pred             CEEEEEEECCCCCCCC
Q ss_conf             1589998618742311
Q gi|255764460|r  264 KQVEFDIMYGEGISFF  279 (363)
Q Consensus       264 ~~a~~~i~fg~GI~~~  279 (363)
                      ..-+|.| =++||.-+
T Consensus       213 ~~~~f~I-t~~Gi~i~  227 (231)
T pfam06745       213 KRYPFEI-TDNGIVVY  227 (231)
T ss_pred             CEEEEEE-ECCCEEEE
T ss_conf             4799999-08987990


No 25 
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.88  E-value=1.5e-20  Score=149.62  Aligned_cols=207  Identities=24%  Similarity=0.308  Sum_probs=126.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH-
Q ss_conf             55014772789997238972688079997068723789999998752008987999973885566--889981988334-
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN-  121 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~-  121 (363)
                      -+++|||++.||.+|| ||+++|+.|.|.||+++||||||+|+++++.+.|-.|+|+-.|.+.+.  ..|+++|+|++. 
T Consensus       245 ~~rv~tGi~~LD~llg-GGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~  323 (501)
T PRK09302        245 NERISSGVPDLDEMCG-GGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGIDLEEM  323 (501)
T ss_pred             CCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHH
T ss_conf             2000479732788725-997589469998899988899999999999865990899999679999999999739984888


Q ss_pred             -----EEE--EECC--CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             -----489--7258--4899999999997448976899814333220265543455530224788876776777764201
Q gi|255764460|r  122 -----LLI--SQPD--TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR  192 (363)
Q Consensus       122 -----l~~--~~~~--~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k  192 (363)
                           +.+  ..|.  +.++.+..+...+++.....|||||+.++...  .          .... ..+++..|...+..
T Consensus       324 ~~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~--~----------~~~~-~r~~l~~L~~~Lk~  390 (501)
T PRK09302        324 ERKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG--G----------SLNE-FRQFVIRLTDYLKQ  390 (501)
T ss_pred             HHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH--C----------CHHH-HHHHHHHHHHHHHH
T ss_conf             748947999837000598999999999999729989999580687652--6----------8599-99999999999976


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE-EEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             78189998634114566546651256553111111248975045534457724767-99987740577898515899986
Q gi|255764460|r  193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN-QTRVKVVKNKMASPFKQVEFDIM  271 (363)
Q Consensus       193 ~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~-~v~~kv~Knk~~~P~~~a~~~i~  271 (363)
                      .+++.+||+....-    +|....++-  .+-|.+...|.++-.+.  +     |. +=.+.|+|.|-++--++..=...
T Consensus       391 ~gvT~l~t~~~~~~----~g~~~~t~~--~iS~l~D~ii~Lry~E~--~-----g~l~R~i~VlK~R~s~h~~~iRe~~I  457 (501)
T PRK09302        391 EEITGLFTNLTPDF----MGSHSITES--HISSLTDTWILLQYVEI--N-----GEMNRALNVLKMRGSWHSKQIREFVI  457 (501)
T ss_pred             CCCEEEEEEECCCC----CCCCCCCCC--CHHHHCCEEEEEEEEEE--C-----CEEEEEEEEEEECCCCCCCCEEEEEE
T ss_conf             89789997612355----676644766--60011124789998713--8-----99989899999368965775378998


Q ss_pred             CCCCCCC
Q ss_conf             1874231
Q gi|255764460|r  272 YGEGISF  278 (363)
Q Consensus       272 fg~GI~~  278 (363)
                      =.+||..
T Consensus       458 t~~Gi~v  464 (501)
T PRK09302        458 TDKGIHI  464 (501)
T ss_pred             CCCCEEE
T ss_conf             7996797


No 26 
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.88  E-value=1.4e-20  Score=149.62  Aligned_cols=206  Identities=20%  Similarity=0.296  Sum_probs=140.7

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHH
Q ss_conf             4655014772789997238972688079997068723789999998752008987999973885566--88998198833
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLK  120 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~  120 (363)
                      +..++||||+..||.+|| ||+|+|+++.|.|+++||||+||++++.++.+.|..|+||.+|.+-..  ..++.+|.|+.
T Consensus         9 ~~~e~i~tGi~~lD~~l~-GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~   87 (241)
T PRK06067          9 EEKEIISTGNEEIDRKLG-GGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDIS   87 (241)
T ss_pred             CCCCCCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHH
T ss_conf             314525668755786506-9977990899980799887999999999998679829999942899999999998399859


Q ss_pred             HE------EEEE--CC-------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             44------8972--58-------489999999999744897689981433322026554345553022478887677677
Q gi|255764460|r  121 NL------LISQ--PD-------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK  185 (363)
Q Consensus       121 ~l------~~~~--~~-------~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk  185 (363)
                      .+      .+.+  |.       ..+..++.+...+++...++|||||++++....+      +      ..+ -++++.
T Consensus        88 ~~~~~G~L~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~~~~------~------~~~-~~~l~~  154 (241)
T PRK06067         88 DFFIWGYLRIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLTIFATYAS------E------DDV-LNFFTE  154 (241)
T ss_pred             HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC------H------HHH-HHHHHH
T ss_conf             998669705783241113421556899999999999971998999928017541388------8------999-999999


Q ss_pred             HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCC--
Q ss_conf             776420178189998634114566546651256553111111248975045534457724767999-87740577898--
Q gi|255764460|r  186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASP--  262 (363)
Q Consensus       186 l~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P--  262 (363)
                      +...+. .+++++++...    +.+-.+.     -..+.|.|+..|.++....   +    |...| ..|+|-|-++.  
T Consensus       155 l~~l~~-~g~tvllt~~~----~~~~~~~-----~~~i~~vaD~vI~Lr~~~~---~----g~~~R~L~V~K~RGs~h~~  217 (241)
T PRK06067        155 CKNLCD-NGKTILITLHP----YAFSEDT-----LVRIRSICDVHLKLRKEQV---G----DRYVKVLEVVKLRGARKTT  217 (241)
T ss_pred             HHHHHH-CCCEEEEEECC----CCCCCCC-----CCCEEEEEEEEEEEEEEEE---C----CEEEEEEEEEEECCCCCCC
T ss_conf             999996-89889999056----7647664-----3124899899999587843---9----9999999999915998998


Q ss_pred             CCEEEEEEECCCCCCCC
Q ss_conf             51589998618742311
Q gi|255764460|r  263 FKQVEFDIMYGEGISFF  279 (363)
Q Consensus       263 ~~~a~~~i~fg~GI~~~  279 (363)
                      .....|.|.=+.||..+
T Consensus       218 g~~i~F~I~~g~GI~v~  234 (241)
T PRK06067        218 GNIISFDVDPGFGIKII  234 (241)
T ss_pred             CCEEEEEECCCCCEEEE
T ss_conf             88888998389875998


No 27 
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.88  E-value=7.9e-21  Score=151.28  Aligned_cols=206  Identities=26%  Similarity=0.371  Sum_probs=154.5

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCH
Q ss_conf             34655014772789997238972688079997068723789999998752008987999973885566--8899819883
Q gi|255764460|r   42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDL  119 (363)
Q Consensus        42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~  119 (363)
                      ....++++||...||..|| ||+-+|.++.+.|+|+.|||||.||+++... .++.|+|+..|.+...  .+|+++|+..
T Consensus        66 ~~~~~R~~Tgi~ElDRVLG-GGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~RA~RLg~~~  143 (454)
T PRK11823         66 AEEEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKLRAERLGLPS  143 (454)
T ss_pred             CCCCCCCCCCCHHHHHCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf             6665532378556652215-8720664899507998889999999999985-5995799815015789999999758888


Q ss_pred             HHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             34489725848999999999974489768998143332202655434555302247888767767777642017818999
Q gi|255764460|r  120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF  199 (363)
Q Consensus       120 ~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~  199 (363)
                      +++++....+.|..++.++.+    ..+++|||||-.+.. .++++..|.  + .|-|-.+..   |...+.++++++++
T Consensus       144 ~~l~l~~et~l~~Il~~i~~~----~P~~lIIDSIQT~~~-~~~~s~pGs--v-sQVre~a~~---L~~~AK~~~i~~~l  212 (454)
T PRK11823        144 DNLYLLAETNLEDILATIEEE----KPDLVVIDSIQTMYS-PELESAPGS--V-SQVRECAAE---LTRLAKQSGIAVFL  212 (454)
T ss_pred             CCCEEEECCCHHHHHHHHHHH----CCCEEEEECHHEEEE-CCCCCCCCC--H-HHHHHHHHH---HHHHHHHCCCCEEE
T ss_conf             873788536899999999860----998899943111541-566778997--8-999999999---99999744982899


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCCCCEEEEEEECCCCCCC
Q ss_conf             8634114566546651256553111111248975045534457724767999-877405778985158999861874231
Q gi|255764460|r  200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASPFKQVEFDIMYGEGISF  278 (363)
Q Consensus       200 iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P~~~a~~~i~fg~GI~~  278 (363)
                      +-|+.-+ |..       .|=+.|.|.-++-|.+-.-.         .+..| .+.+|||++|-....-|.+ -+.|+..
T Consensus       213 VGHVTKd-G~i-------AGPkvLEHmVDtVl~fEGd~---------~~~~RiLR~~KNRFG~t~EiGvFeM-~~~GL~~  274 (454)
T PRK11823        213 VGHVTKE-GAI-------AGPRVLEHMVDTVLYFEGDR---------HSRFRILRAVKNRFGATNEIGVFEM-TEKGLRE  274 (454)
T ss_pred             EEEECCC-CCC-------CCCHHHHHHHCEEEEECCCC---------CCCCEEEEEECCCCCCCCEEEEEEE-CCCCCEE
T ss_conf             9977267-764-------66145222010468751576---------6550245631246776660589986-1688456


No 28 
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.86  E-value=1.1e-20  Score=150.35  Aligned_cols=157  Identities=26%  Similarity=0.400  Sum_probs=128.4

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH----HHHCCCHHHEEEEECCCHH----HHHHHHHHH
Q ss_conf             79997068723789999998752008987999973885566889----9819883344897258489----999999999
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA----RKLGVDLKNLLISQPDTGE----QALEITDML  140 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a----~~~Gvd~~~l~~~~~~~~E----~~~~i~~~l  140 (363)
                      +++|+|+|++||||||++++.++++.|..|+|++.|++.++.+.    ...+.+.++++++.+.+.+    .....++.+
T Consensus         1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL   80 (165)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             98999899998999999999998763997999986664489999999862246713079993599976999999999999


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             74489768998143332202655434555302247888767767777642017818999863411456654665125655
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG  220 (363)
Q Consensus       141 i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG  220 (363)
                      ...+..+++|+||+..++ +++.+..      ...++.+...+++|...+.+.++++|+|||++.+..   ++|.++.||
T Consensus        81 ~~~~~~vliiiDSit~~~-~a~~e~~------~g~~~~v~~~~~~L~~~Ak~~~itvi~i~~v~~d~~---~~~~~~~g~  150 (165)
T cd01120          81 RERGGDDLIILDELTRLV-RALREIR------EGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK---GDPRLTRGA  150 (165)
T ss_pred             HHCCCCEEEEEECHHHHH-HHHHHCC------CCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC---CCCCCCCHH
T ss_conf             986997799992889988-7740015------886789999999999999779828999998433778---997725388


Q ss_pred             CCCCCCCCEEEEEEC
Q ss_conf             311111124897504
Q gi|255764460|r  221 NALKFYSSVRLDIRR  235 (363)
Q Consensus       221 ~al~~~aS~rl~i~k  235 (363)
                      +++.|+++.++.+.|
T Consensus       151 ~~l~~~~d~~i~L~r  165 (165)
T cd01120         151 QNLEDIADTVIVLSR  165 (165)
T ss_pred             HHHHHHCCEEEEEEC
T ss_conf             888364266999839


No 29 
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.85  E-value=2.6e-19  Score=141.68  Aligned_cols=172  Identities=26%  Similarity=0.361  Sum_probs=132.4

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCH
Q ss_conf             34655014772789997238972688079997068723789999998752008987999973885566--8899819883
Q gi|255764460|r   42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDL  119 (363)
Q Consensus        42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~  119 (363)
                      .+..++||||...||..|| ||+-+|.++.|.|.|+.|||||.||+++...+.+ .|+|+..|.+...  -+|+++|+..
T Consensus        69 ~~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~  146 (456)
T COG1066          69 LEEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPT  146 (456)
T ss_pred             EEECCCCCCCHHHHHHHHC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf             2222423578188876536-7723661799736898779899999999987059-5799967767899999999828996


Q ss_pred             HHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             34489725848999999999974489768998143332202655434555302247888767767777642017818999
Q gi|255764460|r  120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF  199 (363)
Q Consensus       120 ~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~  199 (363)
                      +++.+..-.+.|+.+..    +.+...+++|||||--+.+ .+++..-+  .+ .|.|-.+..   |+.++..+++++++
T Consensus       147 ~~l~l~aEt~~e~I~~~----l~~~~p~lvVIDSIQT~~s-~~~~SapG--sV-sQVRe~t~~---L~~~AK~~~i~~fi  215 (456)
T COG1066         147 NNLYLLAETNLEDIIAE----LEQEKPDLVVIDSIQTLYS-EEITSAPG--SV-SQVREVAAE---LMRLAKTKNIAIFI  215 (456)
T ss_pred             CCEEEEHHCCHHHHHHH----HHHCCCCEEEEECCCEECC-CCCCCCCC--CH-HHHHHHHHH---HHHHHHHCCCEEEE
T ss_conf             45577411289999999----9854997899965412302-63357998--58-999999999---99999875973999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             86341145665466512565531111112489750
Q gi|255764460|r  200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR  234 (363)
Q Consensus       200 iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~  234 (363)
                      +-|++-+- .       ..|.+-|.|.-++-|++.
T Consensus       216 VGHVTKeG-~-------IAGPrvLEHmVDtVlyFE  242 (456)
T COG1066         216 VGHVTKEG-A-------IAGPRVLEHMVDTVLYFE  242 (456)
T ss_pred             EEEECCCC-C-------CCCCHHEEEEEEEEEEEE
T ss_conf             98882466-3-------268400436536899983


No 30 
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.82  E-value=7e-19  Score=138.98  Aligned_cols=149  Identities=28%  Similarity=0.411  Sum_probs=110.9

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCH--HHHHHHCCCHH
Q ss_conf             655014772789997238972688079997068723789999998752008-987999973885566--88998198833
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDS--IYARKLGVDLK  120 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~~--~~a~~~Gvd~~  120 (363)
                      .++++|||++.||.+|+ ||+|+||++.|.|+|+|||||||+|++.+..+. |..|+||..|.+-+.  ..++++|.|++
T Consensus         2 ~ieRi~TGI~GLD~iL~-GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~   80 (501)
T PRK09302          2 GIEKLPTGIEGFDDITN-GGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQ   80 (501)
T ss_pred             CCCCCCCCCCCHHHHHC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHH
T ss_conf             97421448711577854-89889977999838999999999999999988559978999857999999999998499868


Q ss_pred             HE------EEE--ECCC----------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             44------897--2584----------89999999999744897689981433322026554345553022478887677
Q gi|255764460|r  121 NL------LIS--QPDT----------GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA  182 (363)
Q Consensus       121 ~l------~~~--~~~~----------~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~  182 (363)
                      .+      .+.  .|+-          .+..++-+...++.-..+.|||||+.++.....  .         .. ...++
T Consensus        81 ~~~~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~--~---------~~-~~R~~  148 (501)
T PRK09302         81 KLIDEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYD--N---------PA-VVRRE  148 (501)
T ss_pred             HHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCC--C---------HH-HHHHH
T ss_conf             973268389996156743111334476899999999999971999999999789987635--8---------78-99999


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             67777642017818999863411
Q gi|255764460|r  183 LRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       183 lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      +..+...+...+|++++|....+
T Consensus       149 l~~L~~~l~~~g~T~llt~E~~~  171 (501)
T PRK09302        149 LFRLFAWLKQKGVTAVMTGERGD  171 (501)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCC
T ss_conf             99999999877977999875666


No 31 
>PRK09519 recA recombinase A; Reviewed
Probab=99.81  E-value=1.1e-20  Score=150.41  Aligned_cols=323  Identities=30%  Similarity=0.484  Sum_probs=269.5

Q ss_pred             HHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCE---EEEEECCCCHHHHHH
Q ss_conf             769999999999986761--887379703665533465501477278999723897268807---999706872378999
Q gi|255764460|r   10 VDKSKALEAALSQIQRVY--GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI---VEIYGPESSGKTTLA   84 (363)
Q Consensus        10 ~~k~~~l~~~~~~i~k~~--g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri---~ei~G~~~sGKTtla   84 (363)
                      ..++..|-++|-+..+.|  |+..|+.++.....-+++.+|++       .||.++.|.||+   +++++++++|++++|
T Consensus       361 q~~q~~lg~lmG~g~~~~~~g~~~i~~~~~~~~~~d~~~~i~~-------~~g~~~~~~~~is~~v~~~p~e~~g~~~~~  433 (790)
T PRK09519        361 ADHARLLGYLIGDGRDGWVGGKTPINFINVQRALIDDVTRIAA-------TLGCAAHPQGRISLAIAHRPGERNGVADLC  433 (790)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH-------CCCCCCCCCCEEEEEEECCCCCCCCCEECC
T ss_conf             7899999998527655787775420222443444314776520-------113345756404433202574235503212


Q ss_pred             HHH-HHHHHHCCCEEE--EEECCCCCCHHHHHHHCCCHHHEEEEECCCH----------HH-HHHHHHHHHHCCC-----
Q ss_conf             999-875200898799--9973885566889981988334489725848----------99-9999999974489-----
Q gi|255764460|r   85 LHT-IAQSQKTGGTCA--FVDAEHALDSIYARKLGVDLKNLLISQPDTG----------EQ-ALEITDMLVRSGA-----  145 (363)
Q Consensus        85 l~~-~a~~qk~g~~~~--~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~----------E~-~~~i~~~li~~~~-----  145 (363)
                      .+. ++..+.-+..|.  ||+.+++.|+-++..+|++.++.++.+++++          || +++|+..|.+.+.     
T Consensus       434 ~q~~~~~~l~w~k~~~~~f~~~~~~~d~~~~~~~g~~~~d~~~~~~~~g~l~~~~~~~~e~~a~~i~~~~~~~~~g~~~~  513 (790)
T PRK09519        434 QQAGIYGKLAWEKTIPNWFFEPDIAADIVGNLLFGLFESDGWVSREQTGALRVGYTTTSEQLAHQIHWLLLRFGVGSTVR  513 (790)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             00112455443202554334752002510221540101542001344540035744543789999999886327764233


Q ss_pred             -------------------------CCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHC--CCCCE
Q ss_conf             -------------------------7689981433322026554345553022478887677677--776420--17818
Q gi|255764460|r  146 -------------------------VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK--LTSSIS--RSKCI  196 (363)
Q Consensus       146 -------------------------~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk--l~~~~~--k~~~~  196 (363)
                                               +++..+|++.+|.++.+..+..+.+.++ -.+.++++.++  +.+++.  .++..
T Consensus       514 ~~~~~q~r~~~~~gr~v~~~~~~~ev~~~~~~~~~~l~~~~~~~G~~g~~~l~-~~~~a~~a~~~~~~a~yva~~m~~~l  592 (790)
T PRK09519        514 DYDPTQKRPSIVNGRRIQSKRQVFEVRISGMDNVTAFAESVPMWGPRGAALIQ-AIPEATQGRRRGSQATYLAAEMTDAV  592 (790)
T ss_pred             CCCCHHCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             36611003466765121221000157777521433346134200642035776-62688898876303431233567779


Q ss_pred             EEEEE-------CCCCCCCCCCCCCCC----CCC-------------------------CCCCCCCCCEE--EEEECCCC
Q ss_conf             99986-------341145665466512----565-------------------------53111111248--97504553
Q gi|255764460|r  197 LVFIN-------QMRMKIGVMFGSPET----TTG-------------------------GNALKFYSSVR--LDIRRVGS  238 (363)
Q Consensus       197 ~i~iN-------Q~r~~ig~m~g~p~~----~~G-------------------------G~al~~~aS~r--l~i~k~~~  238 (363)
                      +.++|       |++..++.|+|+|.-    ..|                         |..+. |+++|  +..||...
T Consensus       593 L~~~~~r~~~~~~~~~~i~~~~~~P~~~~~~~~~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~-y~~vr~~~~~rr~~t  671 (790)
T PRK09519        593 LNYLDERGVTAQEAAAMIGVASGDPRGGMKQVLGASRLRRDRVQALADALDDKFLHDMLAEELR-YSVIREVLPTRRART  671 (790)
T ss_pred             HHHHCCCCCCCHHHCCCCCEECCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHCE-EEEEEECCCCCHHHH
T ss_conf             9985166665533315520324785547676404004455554322102221002124410101-246750466300221


Q ss_pred             CCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHH
Q ss_conf             44577247679998774057789851589998618742311159999973286230274478889450303899999986
Q gi|255764460|r  239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR  318 (363)
Q Consensus       239 ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~  318 (363)
                      .+++-+.+|+.++.+|+|||++|||++|+|+|.||+||+++++++||++++|+|.|+||||+|.++++||||+|++.||.
T Consensus       672 ~~~~ve~~~~~~~~~vv~~k~spPFKqAeFdiLYG~GIsreG~LiDlGVe~g~vrKsGaWytYeGeqlGQGKeNArnfL~  751 (790)
T PRK09519        672 FDLEVEELHTLVAEGVVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLV  751 (790)
T ss_pred             HCCCHHHHCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCEEECCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             01101210331233334326689741100123422563545650431320040102572377425231563577888877


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             67999999999999981777545
Q gi|255764460|r  319 ENIEIAENIESLLRQNAGLVADS  341 (363)
Q Consensus       319 enp~l~~~i~~~ire~~~~~~~~  341 (363)
                      +||++++|||++|+|+++...-.
T Consensus       752 ~N~d~AdEIEKkikekLgigavv  774 (790)
T PRK09519        752 ENADVADEIEKKIKEKLGIGAVV  774 (790)
T ss_pred             HCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             49037799999999872875586


No 32 
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.77  E-value=1.2e-16  Score=124.82  Aligned_cols=203  Identities=25%  Similarity=0.337  Sum_probs=137.8

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH--
Q ss_conf             5014772789997238972688079997068723789999998752008987999973885566--889981988334--
Q gi|255764460|r   46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN--  121 (363)
Q Consensus        46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~--  121 (363)
                      .+|-..--.||..|| ||+|.|+++.|.|++++|||.||.|++....+.|..|+|+.+|.+.+.  ..++++|.|...  
T Consensus         4 ~~~~~~~d~ld~~lg-gGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~   82 (230)
T PRK08533          4 AKIELDGDELHKRLG-GGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKL   82 (230)
T ss_pred             CCEECCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHH
T ss_conf             401057135788717-8988984899986899878999999999998789869999943899999999998699817997


Q ss_pred             ----EEEEEC--CCHH--HHHHHHHHHH---HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             ----489725--8489--9999999997---4489768998143332202655434555302247888767767777642
Q gi|255764460|r  122 ----LLISQP--DTGE--QALEITDMLV---RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI  190 (363)
Q Consensus       122 ----l~~~~~--~~~E--~~~~i~~~li---~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~  190 (363)
                          +.+.+.  ...+  +.-+.++.++   +.-..|+|||||++++.+...-+         .+++-+-++||++.   
T Consensus        83 ~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~---------~~~~~~~~~lk~l~---  150 (230)
T PRK08533         83 ISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASE---------VQIRDLMAFFKRIS---  150 (230)
T ss_pred             HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCH---------HHHHHHHHHHHHHH---
T ss_conf             579679996134335404578999999732664379899990531885167778---------99999999999998---


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE--EEEEEECCCCC-CC-CEE
Q ss_conf             017818999863411456654665125655311111124897504553445772476799--98774057789-85-158
Q gi|255764460|r  191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT--RVKVVKNKMAS-PF-KQV  266 (363)
Q Consensus       191 ~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v--~~kv~Knk~~~-P~-~~a  266 (363)
                      ...++.++.++|.-     +  +.   ..-..+.+.|++-|.++..+        +|..+  .+.|+|=+-++ |+ +..
T Consensus       151 s~gktIilTv~p~~-----~--~e---~~l~~lrs~aDv~i~L~~~~--------vGg~~~r~i~V~K~~ga~~~~~~~I  212 (230)
T PRK08533        151 SLNKVIILTANPKE-----L--PE---SVLLILRTASTILIRLEVKV--------FGGDLKNSAKIVKYNMAKGSFQKII  212 (230)
T ss_pred             HCCCEEEEEECCCC-----C--CH---HHHHHHHEEEEEEEEEEEEE--------CCCEEEEEEEEEEECCCCCCCCCEE
T ss_conf             58988999956331-----3--62---45442041048999987361--------0988999999998448987778647


Q ss_pred             EEEEECCCCCCCC
Q ss_conf             9998618742311
Q gi|255764460|r  267 EFDIMYGEGISFF  279 (363)
Q Consensus       267 ~~~i~fg~GI~~~  279 (363)
                      .|++.=|.||-.+
T Consensus       213 ~F~V~pg~GivVe  225 (230)
T PRK08533        213 PFRVEPGLGLAVE  225 (230)
T ss_pred             EEEECCCCCEEEE
T ss_conf             8998068767999


No 33 
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504   RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ).   RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.73  E-value=6.6e-17  Score=126.47  Aligned_cols=173  Identities=27%  Similarity=0.333  Sum_probs=130.3

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHHC---
Q ss_conf             3465501477278999723897268807999706872378999999875200898799997388556--68899819---
Q gi|255764460|r   42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKLG---  116 (363)
Q Consensus        42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~G---  116 (363)
                      .++.++++||...||..|| |||-+|.++.|-|.|+.|||||.|+++.+..+.-..++||..|.++.  .=+|.|||   
T Consensus        79 ~~e~~rf~s~~~ElDrVLG-GGivpGsliLiGG~PG~GKSTLLLqV~~~LA~~~~~~LYVsGEES~~Q~klRA~RLGit~  157 (481)
T TIGR00416        79 LEEEPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNSMKVLYVSGEESLQQIKLRATRLGITD  157 (481)
T ss_pred             HCCCCEEECCCCCCCEEEC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCC
T ss_conf             2067605306641001106-722244169846889963567899999998404881689972301677888875455324


Q ss_pred             CCHH--------------HEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             8833--------------44897258489999999999744897689981433322026554345553022478887677
Q gi|255764460|r  117 VDLK--------------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA  182 (363)
Q Consensus       117 vd~~--------------~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~  182 (363)
                      +.-+              +|.+..--+.|+....++    +-...++|||||-.|+ ..++...-|  ++ .|-|=++-+
T Consensus       158 ~~~~sqaqdGinnlahdG~L~~L~Et~~e~I~~~~e----~~~P~~~ViDSIQ~ly-~~di~SaPG--SV-sQVRE~t~~  229 (481)
T TIGR00416       158 LVEPSQAQDGINNLAHDGNLYVLSETNLEQICAEIE----ELNPQVVVIDSIQTLY-LPDISSAPG--SV-SQVRECTAE  229 (481)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH----HHCCCEEEEECCCCCC-CHHHCCCCC--CH-HHHHHHHHH
T ss_conf             787023443245430267532157579899999998----5299489991421000-000025888--42-388899999


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             6777764201781899986341145665466512565531111112489750
Q gi|255764460|r  183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR  234 (363)
Q Consensus       183 lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~  234 (363)
                      |.++.   ...+++++++-||. |=|..       .|=+-|.|.-+.-|.+.
T Consensus       230 Lmr~A---Kt~~iaifiVGHVT-KeGsi-------AGPkvLEH~vD~vLyfe  270 (481)
T TIGR00416       230 LMRLA---KTRGIAIFIVGHVT-KEGSI-------AGPKVLEHMVDTVLYFE  270 (481)
T ss_pred             HHHHH---HHCCCCEEEEEEEC-CCCCC-------CCCHHHHHHHHHHEECC
T ss_conf             98765---21686579970043-56754-------34046663433110115


No 34 
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.73  E-value=3.3e-15  Score=115.78  Aligned_cols=212  Identities=24%  Similarity=0.353  Sum_probs=132.7

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHHE
Q ss_conf             55014772789997238972688079997068723789999998752008987999973885566--8899819883344
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKNL  122 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~l  122 (363)
                      .+++|||+..||.+|+ ||+|.|+++.|+|+|+||||+||+|++.+..+.|..|+||.+|..-.-  +.+.++|.|++.+
T Consensus         2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~   80 (260)
T COG0467           2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY   80 (260)
T ss_pred             CCCCCCCCCCHHHHHC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHH
T ss_conf             8656899741888836-898899789999389986899999999977626985899992069899999998809977897


Q ss_pred             ------EEEEC---------------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             ------89725---------------848999999999974489768998143332202655434555302247888767
Q gi|255764460|r  123 ------LISQP---------------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ  181 (363)
Q Consensus       123 ------~~~~~---------------~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~  181 (363)
                            .+...               ...+...+.+..+++......+|+||++.+.-.  .+         ..+.. -+
T Consensus        81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~--~~---------~~~~~-r~  148 (260)
T COG0467          81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLY--LN---------DPALV-RR  148 (260)
T ss_pred             HHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH--CC---------CHHHH-HH
T ss_conf             54440687631211125420104665228999999999998628988999663077665--27---------82578-99


Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCC
Q ss_conf             76777764201781899986341145665466512565531111112489750455344577247679998774057789
Q gi|255764460|r  182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS  261 (363)
Q Consensus       182 ~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~  261 (363)
                      .++.+...+.+.+++.+++.+......        ..+ .-..|.++-.|.+.....  ..  ..-.+ ...+.|=|-.+
T Consensus       149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~--------~~~-~~~~~~vdgvI~l~~~~~--~~--~~~r~-~~~i~k~r~~~  214 (260)
T COG0467         149 ILLLLKRFLKKLGVTSLLTTEAPVEER--------GES-GVEEYIVDGVIRLDLKEI--EG--GGDRR-YLRILKMRGTP  214 (260)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCC--------CCC-CCEEEEEEEEEEEEEEEC--CC--CEEEE-EEEEEECCCCC
T ss_conf             999999876506848999974433466--------656-614216899999977722--57--24888-99998346733


Q ss_pred             C-CCEEEEEEECCCCCCCCCHHH
Q ss_conf             8-515899986187423111599
Q gi|255764460|r  262 P-FKQVEFDIMYGEGISFFGELI  283 (363)
Q Consensus       262 P-~~~a~~~i~fg~GI~~~~~ll  283 (363)
                      + .+.-.|.|.-+.||.-+....
T Consensus       215 ~~~~~~~~~i~~g~gi~i~~~~~  237 (260)
T COG0467         215 HSLKVIPFEITDGEGIVVYPEGR  237 (260)
T ss_pred             CCCCEEEEEEECCCCEEEECCCC
T ss_conf             57745999982788479934640


No 35 
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.71  E-value=6.5e-15  Score=113.87  Aligned_cols=204  Identities=17%  Similarity=0.218  Sum_probs=136.6

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHH-----HCCCHHH------
Q ss_conf             89997238972688079997068723789999998752-00898799997388556688998-----1988334------
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIYARK-----LGVDLKN------  121 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~~~~~iD~E~~~~~~~a~~-----~Gvd~~~------  121 (363)
                      .||..+  ||+.+|.++-|.|.|++|||+|+++++.++ .++|..|+|+..|.+... .+++     .|++..+      
T Consensus         2 eLD~~~--gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~~-~~~R~~s~~~~i~~~~i~~~~~   78 (242)
T cd00984           2 DLDNLT--GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQ-LLQRLLASESGISLSKLRTGSL   78 (242)
T ss_pred             CHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHHHHHHHHHCCCHHHHHCCCC
T ss_conf             523431--6999981899996899999999999999999977995999933353889-9999999982977455302652


Q ss_pred             -------------------EEEE-EC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             -------------------4897-25-84899999999997448976899814333220265543455530224788876
Q gi|255764460|r  122 -------------------LLIS-QP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS  180 (363)
Q Consensus       122 -------------------l~~~-~~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms  180 (363)
                                         +++. .| -+.++....+..+.+...+++||||.+.-+.+...-+.         ....++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~~~~~~~~~---------~~~~i~  149 (242)
T cd00984          79 SDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGN---------RQQEVA  149 (242)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCC---------HHHHHH
T ss_conf             27999999999998616988996699999999999999998836998999826985467776657---------999999


Q ss_pred             HHHHHHHHHHCCCCCEEEEEECC-CCCCCCCCCCCCC--CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf             77677776420178189998634-1145665466512--56553111111248975045534457724767999877405
Q gi|255764460|r  181 QALRKLTSSISRSKCILVFINQM-RMKIGVMFGSPET--TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN  257 (363)
Q Consensus       181 ~~lrkl~~~~~k~~~~~i~iNQ~-r~~ig~m~g~p~~--~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Kn  257 (363)
                      ...+.|..++...+|++|.+.|+ |..-+.--..|..  ..|..++...|++.|.+.|-+.-++.++ .-..+++.|.||
T Consensus       150 ~i~~~Lk~lA~e~~v~Vi~~sQlnR~~~~~~~~~p~l~dl~~S~~ieq~AD~vl~l~R~~~~~~~~~-~~~~~~l~v~Kn  228 (242)
T cd00984         150 EISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESE-SKGIAEIIVAKN  228 (242)
T ss_pred             HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCEEEEEEEEC
T ss_conf             9999999999997993999846786612278988660122332000201749999851434576577-898489999816


Q ss_pred             CCCCCCCEEEEEEECC
Q ss_conf             7789851589998618
Q gi|255764460|r  258 KMASPFKQVEFDIMYG  273 (363)
Q Consensus       258 k~~~P~~~a~~~i~fg  273 (363)
                      |.+|-.   ..++.|+
T Consensus       229 R~G~~G---~v~l~fd  241 (242)
T cd00984         229 RNGPTG---TVELRFD  241 (242)
T ss_pred             CCCCCC---EEEEEEC
T ss_conf             899985---4999957


No 36 
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.70  E-value=1.9e-14  Score=110.91  Aligned_cols=203  Identities=17%  Similarity=0.209  Sum_probs=139.0

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHH---H-HHHCCCHH--
Q ss_conf             147727899972389726880799970687237899999987520-0898799997388556688---9-98198833--
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIY---A-RKLGVDLK--  120 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~---a-~~~Gvd~~--  120 (363)
                      +-++-+.||..+  ||+.+|.++-|.|.||+|||+|+++++.++. +.|..|+|+..|.+-..-.   + ...|+++.  
T Consensus        13 ~~~pf~~LD~~~--~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g~~~~~~   90 (271)
T cd01122          13 VWWPFPVLNKLT--KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLP   90 (271)
T ss_pred             CCCCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHC
T ss_conf             658816688873--799998089999689986999999999999997699089997049999999999999829971103


Q ss_pred             ----------------------HEEEEEC---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf             ----------------------4489725---848999999999974489768998143332202655434555302247
Q gi|255764460|r  121 ----------------------NLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ  175 (363)
Q Consensus       121 ----------------------~l~~~~~---~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~  175 (363)
                                            ++++...   .+.++..+.+..+.+...+++||||.+.-+.+...-        -...
T Consensus        91 ~~~~~~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~~~~~--------~~d~  162 (271)
T cd01122          91 DTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERA--------SGDE  162 (271)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC--------CCCH
T ss_conf             44677809999999999707998088789999889999999999998289988998317850367867--------7318


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC----CCCCC--CCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf             88876776777764201781899986341145665----46651--2565531111112489750455344577247679
Q gi|255764460|r  176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPE--TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ  249 (363)
Q Consensus       176 ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m----~g~p~--~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~  249 (363)
                      ...++..+++|..++.+.+|++|.+.|++-..+.-    .+.|.  -..|.-++.-.|++.|-+.|-.. .+.+  .-+.
T Consensus       163 ~~~i~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l~R~~~-~~~~--~~~~  239 (271)
T cd01122         163 RKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ-AELD--ERNT  239 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEEEECCC-CCCC--CCCE
T ss_conf             999999999999999997997799952676535556566877566661243012532879999975576-6667--8982


Q ss_pred             EEEEEEECCC-CCCC
Q ss_conf             9987740577-8985
Q gi|255764460|r  250 TRVKVVKNKM-ASPF  263 (363)
Q Consensus       250 v~~kv~Knk~-~~P~  263 (363)
                      +.+.|.|||+ +.-.
T Consensus       240 ~~l~v~KnR~~G~tG  254 (271)
T cd01122         240 TYLRILKNRFTGGTG  254 (271)
T ss_pred             EEEEEEECCCCCCCC
T ss_conf             899999368989998


No 37 
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.64  E-value=4.9e-13  Score=101.99  Aligned_cols=211  Identities=22%  Similarity=0.294  Sum_probs=134.5

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCHHHHH-----HHCCC
Q ss_conf             5501477278999723897268807999706872378999999875-20089879999738855668899-----81988
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDSIYAR-----KLGVD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E~~~~~~~a~-----~~Gvd  118 (363)
                      +.-||||...||.++  |||.+|.++-|+|.||.|||+||++++.+ +.+.|..|+|+..|-+-. +.+.     .-||+
T Consensus       174 ~~Gi~TG~~~LD~~~--~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs~e-ql~~R~la~~s~i~  250 (421)
T TIGR03600       174 LTGLSTGLPKLDRLT--NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAE-QLGERLLASKSGIN  250 (421)
T ss_pred             CCCCCCCCHHHHHHH--CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHCCCC
T ss_conf             677878807899983--699988689998546787459999999999986698389992579999-99999999854897


Q ss_pred             HHHE-------------------------EEEE-C-CCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             3344-------------------------8972-5-84899999999997448-97689981433322026554345553
Q gi|255764460|r  119 LKNL-------------------------LISQ-P-DTGEQALEITDMLVRSG-AVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus       119 ~~~l-------------------------~~~~-~-~~~E~~~~i~~~li~~~-~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      .+++                         ++.. | -+..+.-..+..+.+.. .+++||||-+.=+.|..   +.  + 
T Consensus       251 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~---~~--~-  324 (421)
T TIGR03600       251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR---GR--D-  324 (421)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCC---CC--C-
T ss_conf             76665289998999999999998616878996699887678999999999862898699975786537888---88--8-


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             022478887677677776420178189998634114566546-65125--655311111124897504553445772476
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDKDSITG  247 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~~iG  247 (363)
                         .. .-++..-|.|..++...++++|...|+--+.-...+ .|.-+  -..-++.--|.+.+.+-|-+.-+..++.-|
T Consensus       325 ---r~-~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~fl~R~~~y~~~~~~~~  400 (421)
T TIGR03600       325 ---RN-EELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAG  400 (421)
T ss_pred             ---HH-HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             ---89-99999999999999997997899705786523368888654344433574204748999613333478888888


Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf             7999877405778985158999861
Q gi|255764460|r  248 NQTRVKVVKNKMASPFKQVEFDIMY  272 (363)
Q Consensus       248 ~~v~~kv~Knk~~~P~~~a~~~i~f  272 (363)
                       .+.+-|.|||.+|..   .+++.|
T Consensus       401 -~~e~ivaKnRnG~~G---~v~l~f  421 (421)
T TIGR03600       401 -VAELILAKNRHGPTG---TVELLF  421 (421)
T ss_pred             -EEEEEEEECCCCCCC---EEEEEC
T ss_conf             -389999814789984---387539


No 38 
>PRK08760 replicative DNA helicase; Provisional
Probab=99.59  E-value=2.4e-12  Score=97.69  Aligned_cols=223  Identities=17%  Similarity=0.191  Sum_probs=137.7

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHH-----CC
Q ss_conf             6550147727899972389726880799970687237899999987520-08987999973885566889981-----98
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKL-----GV  117 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~a~~~-----Gv  117 (363)
                      .+.-||||...||..+  |||.+|.++-|.|-||.|||+||++++.++. +.+..|+|+..|-+-. +.+.++     ||
T Consensus       208 ~~~Gi~TG~~~LD~~t--~Gl~~G~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs~~-ql~~Rlls~~s~v  284 (476)
T PRK08760        208 NITGLPTGYNDFDAMT--AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS-QLAMRLISSNGRI  284 (476)
T ss_pred             CCEECCCCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHCCC
T ss_conf             9533677968899744--699877779998778874789999999999983799789970369999-9999999983389


Q ss_pred             CHHHE-------------------------EEE-EC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             83344-------------------------897-25-8489999999999744897689981433322026554345553
Q gi|255764460|r  118 DLKNL-------------------------LIS-QP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus       118 d~~~l-------------------------~~~-~~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      +..++                         ++. .| -+.++.-..+..+.+...+++||||-+.=+.+...-+      
T Consensus       285 ~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idD~~~~t~~~ir~~~R~~k~~~~l~lvvIDYLqL~~~~~~~~------  358 (476)
T PRK08760        285 NAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSE------  358 (476)
T ss_pred             CHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCC------
T ss_conf             76777648999999999999999986088168579999999999999999872799879997076415888874------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             022478887677677776420178189998634114566546-651256--55311111124897504553445772476
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIRRVGSIKDKDSITG  247 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~k~~~ik~~~~~iG  247 (363)
                         ....-++..-|.|..++...+|++|...|+--++-.... .|...-  ..-++.=-|++.+-+-|-+.-...+..--
T Consensus       359 ---~r~~~v~~isr~lK~lAkel~vpVi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~~l~R~~~y~~~~~~~~  435 (476)
T PRK08760        359 ---NRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDK  435 (476)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCHHHCCCCCCCCC
T ss_conf             ---48899999999999999997997899631576634479999860011254420320868999624532387679888


Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCH
Q ss_conf             7999877405778985158999861874231115
Q gi|255764460|r  248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE  281 (363)
Q Consensus       248 ~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~  281 (363)
                      ..+.+-|.|||-+|..   .+++.|..-..+..+
T Consensus       436 ~~~e~ivaKnR~G~~G---~v~l~f~~~~~rF~~  466 (476)
T PRK08760        436 GLAEIIIGKHRGGPTG---SCKLKFFGEYTRFDN  466 (476)
T ss_pred             CEEEEEEECCCCCCCC---EEEEEEECCCCCCCC
T ss_conf             8079999746789862---699998568777036


No 39 
>PRK05748 replicative DNA helicase; Provisional
Probab=99.59  E-value=3.2e-12  Score=96.86  Aligned_cols=223  Identities=15%  Similarity=0.177  Sum_probs=137.0

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHH----HHHHHCCC
Q ss_conf             6550147727899972389726880799970687237899999987520-089879999738855668----89981988
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSI----YARKLGVD  118 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~----~a~~~Gvd  118 (363)
                      .+.-||||...||.++  |||.+|.++-|+|.||.|||+||++++.++. +.|..|+|+..|-+-..-    .+..-||+
T Consensus       182 ~~~Gi~TG~~~LD~~~--~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~s~v~  259 (448)
T PRK05748        182 DITGIPTGFRDLDKMT--SGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGRID  259 (448)
T ss_pred             CCCEEECCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             9761057827899982--79886737999847998768999999999998569808998177888899999999974677


Q ss_pred             HHHE------------------------EEEE--C-CCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             3344------------------------8972--5-8489999999999744-897689981433322026554345553
Q gi|255764460|r  119 LKNL------------------------LISQ--P-DTGEQALEITDMLVRS-GAVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus       119 ~~~l------------------------~~~~--~-~~~E~~~~i~~~li~~-~~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      ..++                        +++.  | -+..+.-..+..+.+. +.+++||||-+.-+.+. .-.      
T Consensus       260 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vviDYlqli~~~-~~~------  332 (448)
T PRK05748        260 QQKLRTGQLTDEDWPKLTIAVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLIVIDYLQLIQGS-GRS------  332 (448)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCC-CCC------
T ss_conf             7777628999999999999999986598378558988689999999999997599889997168644777-877------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             022478887677677776420178189998634114566546-65125--655311111124897504553445772476
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDKDSITG  247 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~~iG  247 (363)
                       ......-++..-|.|..++...++++|.+.|+--+.-..-+ .|..+  -+.-++.=-|++.+.+-|-+.-....+.-|
T Consensus       333 -~~~r~~ev~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLr~SG~IEqdAD~v~~l~R~~~y~~~~~~~~  411 (448)
T PRK05748        333 -GENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKN  411 (448)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCEEEEECCHHHCCCCCCCCC
T ss_conf             -6439999999999999999996998899702684322258999875452244530320768989653432388888898


Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             799987740577898515899986187423111
Q gi|255764460|r  248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG  280 (363)
Q Consensus       248 ~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~  280 (363)
                       .+.+-|.|||-+|..   .+++.|..-..+..
T Consensus       412 -~~e~ivaKnR~G~~g---~v~~~f~~~~~rf~  440 (448)
T PRK05748        412 -TIEIIIGKQRNGPVG---TVRLAFQKEYNKFV  440 (448)
T ss_pred             -EEEEEEECCCCCCCC---EEEEEEECCCCCHH
T ss_conf             -279999726899860---59999867878720


No 40 
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.59  E-value=5.2e-14  Score=108.18  Aligned_cols=148  Identities=20%  Similarity=0.286  Sum_probs=104.1

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHH----HHHHHCCCHHH-
Q ss_conf             14772789997238972688079997068723789999998752-0089879999738855668----89981988334-
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSI----YARKLGVDLKN-  121 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~~~~~iD~E~~~~~~----~a~~~Gvd~~~-  121 (363)
                      ||||.+.||..+  ||+.+|.++.|.|+|++|||+|+++++.++ .+.|..|+|+..|.+-..-    .+...|++.++ 
T Consensus         2 IpTG~~~lD~~~--gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~~~R~~a~~~~v~~~~i   79 (186)
T pfam03796         2 LPTGFTDLDQLT--GGLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQLAERLLSSESRISSSKL   79 (186)
T ss_pred             CCCCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf             388807788642--698888179999679998799999999999997099668754755299999999998626765554


Q ss_pred             ------------------------EEEE-EC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf             ------------------------4897-25-848999999999974489768998143332202655434555302247
Q gi|255764460|r  122 ------------------------LLIS-QP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ  175 (363)
Q Consensus       122 ------------------------l~~~-~~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~  175 (363)
                                              +++. .| -+.++....+..+.....+++||||.+.-+.+......+       ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~~~~~-------~r  152 (186)
T pfam03796        80 RSGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKASKSE-------NR  152 (186)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCC-------CH
T ss_conf             12512167999999999998539868847999989999999999998559988997489863677888775-------59


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             88876776777764201781899986341
Q gi|255764460|r  176 ARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       176 ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                      ...+....+.|..++.+.+|++|...|+.
T Consensus       153 ~~~v~~i~~~Lk~lA~e~~i~ii~~sQlN  181 (186)
T pfam03796       153 QQEISEISRSLKALAKELNIPVIALSQLS  181 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             99999999999999999799189972257


No 41 
>PRK07004 replicative DNA helicase; Provisional
Probab=99.58  E-value=1.6e-12  Score=98.75  Aligned_cols=220  Identities=18%  Similarity=0.207  Sum_probs=138.4

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHH-----CCC
Q ss_conf             550147727899972389726880799970687237899999987520-08987999973885566889981-----988
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKL-----GVD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~a~~~-----Gvd  118 (363)
                      +.-||||...||.++  |||.+|.++-|+|-||.|||+|||+++.++. +.|..|+|+..|-+-. +.+.++     +|+
T Consensus       193 ~~Gi~TGf~~LD~~t--~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~~g~~V~~FSLEMs~e-ql~~Rlls~~s~I~  269 (460)
T PRK07004        193 VTGTPTGFVDLDRMT--SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGT-QLAMRMLGSVGRLD  269 (460)
T ss_pred             CCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH-HHHHHHHHHCCCCC
T ss_conf             853867938898652--389877579997368764269999999999872588669984779999-99999998606988


Q ss_pred             HHHE-------------------------EEEE-CC-CHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             3344-------------------------8972-58-489999999999744-897689981433322026554345553
Q gi|255764460|r  119 LKNL-------------------------LISQ-PD-TGEQALEITDMLVRS-GAVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus       119 ~~~l-------------------------~~~~-~~-~~E~~~~i~~~li~~-~~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      ..++                         ++.. |. +..+.-..+..+.+. +.+++||||-+.=+.+...  +     
T Consensus       270 ~~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD~~~lt~~~ira~~Rr~~~~~g~l~lvviDYlqli~~~~~--~-----  342 (460)
T PRK07004        270 QHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQ--G-----  342 (460)
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC--C-----
T ss_conf             211007889999999999999998559748968987307899999999997435888998507754478888--8-----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             022478887677677776420178189998634114566546-651256--55311111124897504553445772476
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIRRVGSIKDKDSITG  247 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~k~~~ik~~~~~iG  247 (363)
                        ...+.-++..-|.|..++...++++|.+.|+--++-..-+ .|...-  ..-++.--|.+.+.+.|-+. .+.+..--
T Consensus       343 --~~r~~ei~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsDLReSGsIEQDADvV~fL~r~~~-y~~~~~~~  419 (460)
T PRK07004        343 --ENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEV-YNPDSPDK  419 (460)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCEEEEECCCCC-CCCCCCCC
T ss_conf             --889999999999999999996997899704684312278998754232023320320778999754101-58998888


Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             799987740577898515899986187423111
Q gi|255764460|r  248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG  280 (363)
Q Consensus       248 ~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~  280 (363)
                      ..+.+-|.|||.+|..   ..++.|.....+..
T Consensus       420 ~~~e~ivaK~R~G~~g---~v~l~f~~~~~rF~  449 (460)
T PRK07004        420 GTAEIIIGKQRNGPIG---PVRLTFLGQYTKFD  449 (460)
T ss_pred             CEEEEEEECCCCCCCE---EEEEEEECCCCCHH
T ss_conf             8169999736889960---69999856877351


No 42 
>PRK05595 replicative DNA helicase; Provisional
Probab=99.58  E-value=1.8e-12  Score=98.50  Aligned_cols=221  Identities=18%  Similarity=0.203  Sum_probs=135.5

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCHHH----HHHHCCCH
Q ss_conf             5501477278999723897268807999706872378999999875-200898799997388556688----99819883
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDSIY----ARKLGVDL  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E~~~~~~~----a~~~Gvd~  119 (363)
                      +.-||||...||.++  |||.+|.++-|+|.||.|||+||++++.+ +.+.|..|+|+..|-+-..-.    +..-||+.
T Consensus       181 ~~Gi~TGf~~LD~~t--~Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~  258 (444)
T PRK05595        181 TTGVASGFRELDAKT--SGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSEANVDM  258 (444)
T ss_pred             CCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf             677658847699874--599857779998579898079999999999986699379995889999999999996469884


Q ss_pred             HHEE------------------------EEE--C-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             3448------------------------972--5-848999999999974489768998143332202655434555302
Q gi|255764460|r  120 KNLL------------------------ISQ--P-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP  172 (363)
Q Consensus       120 ~~l~------------------------~~~--~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~  172 (363)
                      .++-                        ++.  | -+..+.-..+..+.+...+++||||-+.=+.+...-+        
T Consensus       259 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiDYlqLi~~~~~~~--------  330 (444)
T PRK05595        259 LRLRTGNLEDKDWENIARASGPLAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILIDYLQLMSGGKSSE--------  330 (444)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCC--------
T ss_conf             423268979999999999999985489705489996489999999999987399989982376357898888--------


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf             2478887677677776420178189998634114566546-651256--5531111112489750455344577247679
Q gi|255764460|r  173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIRRVGSIKDKDSITGNQ  249 (363)
Q Consensus       173 g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~  249 (363)
                       ....-++..-|.|..++...+|++|.+.|+--++-.... .|.-.-  ..-++.=-|++.+.+-|-+.-....+. -..
T Consensus       331 -~r~~ev~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~-~~~  408 (444)
T PRK05595        331 -SRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADLVMFLYRDEYYNKETED-KNV  408 (444)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCC-CCC
T ss_conf             -899999999999999999969979997026854112799997610101223035437689896544214888777-882


Q ss_pred             EEEEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             9987740577898515899986187423111
Q gi|255764460|r  250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFG  280 (363)
Q Consensus       250 v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~  280 (363)
                      +.+-|.|||-+|..   .+.+.|..-..+..
T Consensus       409 ~elivaKnR~G~~G---~v~~~f~~~~~rF~  436 (444)
T PRK05595        409 AECIIAKQRNGPTG---TVKLAWLGQYSKFG  436 (444)
T ss_pred             EEEEEEECCCCCCC---EEEEEEECCCCCCC
T ss_conf             58999806889961---59999865868631


No 43 
>PRK05636 replicative DNA helicase; Provisional
Probab=99.58  E-value=2e-12  Score=98.09  Aligned_cols=219  Identities=17%  Similarity=0.193  Sum_probs=138.4

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHH-----HHCCCH
Q ss_conf             50147727899972389726880799970687237899999987520-089879999738855668899-----819883
Q gi|255764460|r   46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYAR-----KLGVDL  119 (363)
Q Consensus        46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~a~-----~~Gvd~  119 (363)
                      .-||||...||.++  |||.+|.++-|+|-||.|||+|||+++.++. +.|..|+|+..|-+-.. .+.     .-+|++
T Consensus       248 ~Gi~TGf~~LD~~t--~Gl~~G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs~~q-l~~Rlla~~s~V~~  324 (507)
T PRK05636        248 TGIPTGFKDLDDLT--NGLRGGQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMSKSE-IVMRLLSAEAEVRL  324 (507)
T ss_pred             EEEECCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHHHHHHHHCCCCH
T ss_conf             25658808899755--0888356799973787866899999999999876993799715699899-99999998479887


Q ss_pred             HHE-------------------------EEEE-C-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             344-------------------------8972-5-848999999999974489768998143332202655434555302
Q gi|255764460|r  120 KNL-------------------------LISQ-P-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP  172 (363)
Q Consensus       120 ~~l-------------------------~~~~-~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~  172 (363)
                      .++                         ++.. | -+..+....+..+.+...+++||||-+.-+.+....+        
T Consensus       325 ~~ir~g~l~~~~~~~l~~a~~~l~~~pl~IdD~~~lti~~Ira~aRrlk~~~~l~livVDYLQLm~~~~~~~--------  396 (507)
T PRK05636        325 ADMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKMIVVDYLQLMSSGKRVE--------  396 (507)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCC--------
T ss_conf             888558878899999999999986198899849997699999999999861799989984588456888876--------


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf             2478887677677776420178189998634114566546-651256--5531111112489750455344577247679
Q gi|255764460|r  173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIRRVGSIKDKDSITGNQ  249 (363)
Q Consensus       173 g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~  249 (363)
                       ....-++..-|.|..++...+|++|.+.|+--.+-.... .|...-  .--++.=-|.+.+.+-|.+. .+.+...-..
T Consensus       397 -~R~~ev~~ISr~LK~lAkel~vpVi~LsQLnR~~E~R~dkrP~lsDLReSG~IEQDADvV~~l~R~~~-~~~~~~~~~~  474 (507)
T PRK05636        397 -SRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDS-QDKDDERAGE  474 (507)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEECCCCC-CCCCCCCCCC
T ss_conf             -68999999999999999997998899712684423479999772021264511542779999645343-5888877780


Q ss_pred             EEEEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             9987740577898515899986187423111
Q gi|255764460|r  250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFG  280 (363)
Q Consensus       250 v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~  280 (363)
                      +.+-|.|||-+|.   ..+.+.|..-+.+..
T Consensus       475 ~elivaKnRnG~~---G~v~l~f~~~~~rF~  502 (507)
T PRK05636        475 ADIILAKHRGGPI---DTVQVAHQLHYSRFV  502 (507)
T ss_pred             EEEEEECCCCCCC---EEEEEEEECCCCCHH
T ss_conf             6999972688985---169999845867422


No 44 
>PRK07263 consensus
Probab=99.58  E-value=3.4e-12  Score=96.71  Aligned_cols=222  Identities=17%  Similarity=0.218  Sum_probs=137.0

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHH-----HCCC
Q ss_conf             55014772789997238972688079997068723789999998752-00898799997388556688998-----1988
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIYARK-----LGVD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~~~~~iD~E~~~~~~~a~~-----~Gvd  118 (363)
                      +.-||||...||.++  |||.+|.++-|+|-||.|||+||++++.++ .+.|..|+|+..|-+-. +.+.+     -||+
T Consensus       183 ~~Gi~TGf~~LD~~t--~Gl~~GdLiviaaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEMs~~-ql~~R~la~~~~i~  259 (453)
T PRK07263        183 VTGLPTGFRDLDKIT--TGLHPDQLIILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEMGAE-SLVDRMLAAEGMVD  259 (453)
T ss_pred             CCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHCCCC
T ss_conf             776758858799773--289978689997278884789999999999985598289992469989-99999999861733


Q ss_pred             HHHE------------------------EEEE--C-CCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             3344------------------------8972--5-8489999999999744--89768998143332202655434555
Q gi|255764460|r  119 LKNL------------------------LISQ--P-DTGEQALEITDMLVRS--GAVDIIVIDSVAALTPRAEIEGDMGE  169 (363)
Q Consensus       119 ~~~l------------------------~~~~--~-~~~E~~~~i~~~li~~--~~~~liViDSi~al~p~~Eie~~~~d  169 (363)
                      ..++                        +++.  | -+..+.-..+..+.+.  +.+++||||.+.-+.+... +     
T Consensus       260 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~~l~livIDYlqLi~~~~~-~-----  333 (453)
T PRK07263        260 SHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKITEIRARSRKLSQEVDGGLGLIVIDYLQLITGTKP-E-----  333 (453)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-C-----
T ss_conf             1033136524799999999998740685899789999989999999999986058986899736764468885-3-----


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCC-----
Q ss_conf             3022478887677677776420178189998634114566546-65125--655311111124897504553445-----
Q gi|255764460|r  170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKD-----  241 (363)
Q Consensus       170 ~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~-----  241 (363)
                         . ...-++..-|.|..++...+|++|.+.|+--.+-.... .|.-.  -..-++.=-|.+.+.+-|-..-..     
T Consensus       334 ---~-r~~ev~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~  409 (453)
T PRK07263        334 ---N-RQQEVSDISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRKEGDEA  409 (453)
T ss_pred             ---C-HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHCCCEEEEECCHHHCCCCCCCC
T ss_conf             ---5-999999999999999998799799974368431236899977433225454200275788864453347765532


Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHH
Q ss_conf             77247679998774057789851589998618742311159
Q gi|255764460|r  242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL  282 (363)
Q Consensus       242 ~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~l  282 (363)
                      .+....+.+.+-|-|||-+|.   ....+.|.....+..++
T Consensus       410 ~~~~~~~~~e~ivaKnR~G~~---G~v~~~f~~~~~rF~~l  447 (453)
T PRK07263        410 EEAVEDNTIEVILEKNRAGAR---GTVKLMFQKEYNKFSSI  447 (453)
T ss_pred             CCCCCCCEEEEEEECCCCCCC---EEEEEEEECCCCCCCCC
T ss_conf             126778717999976789986---06999987887872150


No 45 
>PRK09165 replicative DNA helicase; Provisional
Probab=99.58  E-value=2.4e-12  Score=97.67  Aligned_cols=226  Identities=17%  Similarity=0.262  Sum_probs=137.2

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH---------------CCCEEEEEECCCCCC
Q ss_conf             65501477278999723897268807999706872378999999875200---------------898799997388556
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK---------------TGGTCAFVDAEHALD  108 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk---------------~g~~~~~iD~E~~~~  108 (363)
                      .+.-||||...||.++  |||-+|.++-|+|-||.|||+|||+++.++.+               .|..|+|+.-|-+-.
T Consensus       184 ~~~Gi~TGf~~LD~~t--~G~~~GdLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~  261 (484)
T PRK09165        184 HLSGISTGLRDLDSKL--GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAE  261 (484)
T ss_pred             CCCCEECCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHH
T ss_conf             9773315844599871--58887737999607999778999999999998741022223321136898489994779999


Q ss_pred             HH----HHHHHCCCHHHE-------------------------EEEE-C-CCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             68----899819883344-------------------------8972-5-848999999999974489768998143332
Q gi|255764460|r  109 SI----YARKLGVDLKNL-------------------------LISQ-P-DTGEQALEITDMLVRSGAVDIIVIDSVAAL  157 (363)
Q Consensus       109 ~~----~a~~~Gvd~~~l-------------------------~~~~-~-~~~E~~~~i~~~li~~~~~~liViDSi~al  157 (363)
                      .-    .+..-||+..++                         ++.. | -+..+.-..+..+.+...+++||||-+.-+
T Consensus       262 ql~~Rlls~~s~V~~~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livIDYLqLi  341 (484)
T PRK09165        262 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVIDYLQLI  341 (484)
T ss_pred             HHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHC
T ss_conf             99999999972686135544899999999999999999719848977999879999999999998609988999517635


Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEE
Q ss_conf             2026554345553022478887677677776420178189998634114566546-651256--5531111112489750
Q gi|255764460|r  158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIR  234 (363)
Q Consensus       158 ~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~  234 (363)
                      .+...-..   +    ....-.+..-|.|..++...+|++|.+.|+--++-..-+ .|.-.-  ..-++.=-|++.+.+-
T Consensus       342 ~~~~~~~~---~----~R~~ev~~Isr~LK~lAkel~ipVi~LsQLnR~~E~R~dkrP~lsDLReSGsIEQDADvV~fly  414 (484)
T PRK09165        342 RGSSKRSQ---D----NRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVY  414 (484)
T ss_pred             CCCCCCCC---H----HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEC
T ss_conf             78888861---2----1999999999999999999699699974578442347999976001035552022077899964


Q ss_pred             CCCCC------CCC----------CEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCH
Q ss_conf             45534------457----------724767999877405778985158999861874231115
Q gi|255764460|r  235 RVGSI------KDK----------DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE  281 (363)
Q Consensus       235 k~~~i------k~~----------~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~  281 (363)
                      |-+.-      ..+          .+.+-..+.+-|-|||-+|.   ....+.|..-..+..+
T Consensus       415 R~~yY~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnRnG~~---G~v~l~f~~~~~rF~d  474 (484)
T PRK09165        415 REEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPT---GTVKLHFESEFTRFGD  474 (484)
T ss_pred             CHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCC---EEEEEEEECCCCCCCC
T ss_conf             47661344587767520122321012458807999963788986---0699998778776227


No 46 
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.57  E-value=1.6e-13  Score=105.03  Aligned_cols=164  Identities=23%  Similarity=0.272  Sum_probs=110.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH------EEEEECCC----------HH
Q ss_conf             9997068723789999998752008987999973885566--889981988334------48972584----------89
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN------LLISQPDT----------GE  131 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~------l~~~~~~~----------~E  131 (363)
                      |.|.|+||||||+||+|++.+..+.|..|+|+..|.+.+.  ..++++|.|+++      +.+.....          .+
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~~   81 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL   81 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHH
T ss_conf             15876899999999999999998769978999950799999999998399858986458568996262002203332367


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf             99999999974489768998143332202655434555302247888767767777642017818999863411456654
Q gi|255764460|r  132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF  211 (363)
Q Consensus       132 ~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~  211 (363)
                      ..++.+...+++...+.|||||+.++....+           ...|   ..++.+...+.+.+++.++|.+....-+.  
T Consensus        82 ~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~~-----------~~~~---~~~~~l~~~l~~~~~t~ll~~e~~~~~~~--  145 (187)
T cd01124          82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQ-----------STAR---LEIRRLLFALKRFGVTTLLTSEQSGLEGT--  145 (187)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCHHHHHHCCH-----------HHHH---HHHHHHHHHHHHCCCCEEEEEEECCCCCC--
T ss_conf             8999999999984998999948688752566-----------6689---99999999999769968999974256676--


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE-EEEEEEECCCCC
Q ss_conf             66512565531111112489750455344577247679-998774057789
Q gi|255764460|r  212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ-TRVKVVKNKMAS  261 (363)
Q Consensus       212 g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~-v~~kv~Knk~~~  261 (363)
                           ..+...+.|.++-.|.++....   +    |.. =...|+|.|-++
T Consensus       146 -----~~~~~~~~~l~DgiI~L~~~~~---~----~~~~R~l~I~KmRgs~  184 (187)
T cd01124         146 -----GFGGGDVEYLVDGVIRLRLDEE---G----GRLRRSLSVVKMRGGP  184 (187)
T ss_pred             -----CCCCCCEEEEEEEEEEEEEEEC---C----CEEEEEEEEEECCCCC
T ss_conf             -----6788847799789999978804---9----9799999999858998


No 47 
>PRK08840 replicative DNA helicase; Provisional
Probab=99.56  E-value=3.6e-12  Score=96.53  Aligned_cols=224  Identities=14%  Similarity=0.163  Sum_probs=137.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHH----HHHHCCCH
Q ss_conf             550147727899972389726880799970687237899999987520-0898799997388556688----99819883
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIY----ARKLGVDL  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~----a~~~Gvd~  119 (363)
                      +.-||||...||.++  ||+-+|.++-|.|-||.|||+|||+++.++. +.|..|+|+..|-+-..-.    +..-||+.
T Consensus       197 ~~Gi~TG~~~LD~~~--~Gl~~G~LiviaaRPsmGKTalalnia~n~a~~~~~~v~~fSlEMs~~ql~~Rlls~~s~i~~  274 (464)
T PRK08840        197 VTGVSTGFTDLNKKT--AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQ  274 (464)
T ss_pred             CCCCCCCHHHHHHHC--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf             736888989998753--698757679998379873689999999999996599679976779989999999998538982


Q ss_pred             HHE-------------------------EEEE--C-CCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             344-------------------------8972--5-84899999999997448-97689981433322026554345553
Q gi|255764460|r  120 KNL-------------------------LISQ--P-DTGEQALEITDMLVRSG-AVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus       120 ~~l-------------------------~~~~--~-~~~E~~~~i~~~li~~~-~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      .++                         +++.  | -+..+.-..+..+.+.. .+++||||.+.=+.+...  +   + 
T Consensus       275 ~~ir~g~l~~~e~~~i~~a~~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~~l~lvvIDYLqL~~~~~~--~---~-  348 (464)
T PRK08840        275 TKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRVAREHGGLSMIMVDYLQLMRVPAL--Q---D-  348 (464)
T ss_pred             CHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC--C---C-
T ss_conf             011148889999999999999998479958856998757999999999998648987899618866067886--4---0-


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf             022478887677677776420178189998634114566546-65125--655311111124897504553445772476
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDKDSITG  247 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~~iG  247 (363)
                         ....-++..-|.|..++...++++|.+.|+--.+-..-+ -|.-.  -..-++.=-|++.+-+-|-+.- +.+...-
T Consensus       349 ---~r~~~i~~isr~lK~lAkel~vpVv~lsQLnR~~e~r~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y-~~~~~~~  424 (464)
T PRK08840        349 ---NRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVY-NPDSPLK  424 (464)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHC-CCCCCCC
T ss_conf             ---367899999999999999969989996316853111699998735012544105438689996443104-8988878


Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHH
Q ss_conf             799987740577898515899986187423111599
Q gi|255764460|r  248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI  283 (363)
Q Consensus       248 ~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~ll  283 (363)
                      ..+.+-|.|||-+|.   ..+.+.|..-..+..+|.
T Consensus       425 ~~~elivaKnR~G~~---G~v~l~f~~~~~rF~~~~  457 (464)
T PRK08840        425 GTAEIIIGKQRNGPI---GSVRLTFQGQYSRFDNYA  457 (464)
T ss_pred             CEEEEEEECCCCCCC---EEEEEEEECCCCCCCCCC
T ss_conf             806999972688986---069999856877530368


No 48 
>PRK08082 consensus
Probab=99.56  E-value=5.1e-12  Score=95.60  Aligned_cols=222  Identities=16%  Similarity=0.196  Sum_probs=138.0

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHHH-----CCC
Q ss_conf             55014772789997238972688079997068723789999998752-008987999973885566889981-----988
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIYARKL-----GVD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~~~~~iD~E~~~~~~~a~~~-----Gvd  118 (363)
                      +.-||||...||.++  |||-+|.++-|+|-||.|||+|+++++.++ .+.|..|+|+..|-+-. +.+.++     ||+
T Consensus       183 ~~Gi~TGf~~LD~lt--~G~~~g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~~~-~l~~R~la~~s~i~  259 (453)
T PRK08082        183 ITGIPTGFTELDRMT--AGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGAD-QLVMRMLCAEGNID  259 (453)
T ss_pred             CCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHCCCCCC
T ss_conf             775548848888641--477758579998678875789999999999985599489973138989-99999997155888


Q ss_pred             HHHEE------------------------EE--EC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             33448------------------------97--25-84899999999997448976899814333220265543455530
Q gi|255764460|r  119 LKNLL------------------------IS--QP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL  171 (363)
Q Consensus       119 ~~~l~------------------------~~--~~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~  171 (363)
                      ..++.                        ++  .| -+..+.-..+..+.+...+++||||-+.=+.+...-    ++  
T Consensus       260 ~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~~livIDYlqLi~~~~~~----~~--  333 (453)
T PRK08082        260 AQRLRTGSLTSDDWGKLTMAMGSLSNAGIYIDDTPGIRVNEIRAKCRRLKQEQGLGMILIDYLQLIQGSGRS----GE--  333 (453)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCC----CC--
T ss_conf             667751899999999999999985069738978999989999999999998669988999507733778988----87--


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf             22478887677677776420178189998634114566546-65125--6553111111248975045534457724767
Q gi|255764460|r  172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDKDSITGN  248 (363)
Q Consensus       172 ~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~  248 (363)
                        ....-++..-|.|..++...++++|...|+--.+-..-+ .|.-.  -..-++.=-|.+.+-+-|-+.-....+.- .
T Consensus       334 --~r~~ev~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~-~  410 (453)
T PRK08082        334 --NRQQEVSEISRTLKALARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDRETENK-N  410 (453)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEECCHHHCCCCCCCC-C
T ss_conf             --8999999999999999999699799964478431237999977101026552053366898965565438888878-8


Q ss_pred             EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCH
Q ss_conf             999877405778985158999861874231115
Q gi|255764460|r  249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE  281 (363)
Q Consensus       249 ~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~  281 (363)
                      .+.+-|.|||-+|-.   ...+.|..-..+..+
T Consensus       411 ~~e~ivaK~RnG~~g---~v~l~f~~~~~rf~~  440 (453)
T PRK08082        411 IIEIIIAKQRNGPVG---TVELAFVKEYNKFVN  440 (453)
T ss_pred             EEEEEEECCCCCCCC---EEEEEEECCCCCHHC
T ss_conf             069999736899861---599998568674307


No 49 
>PRK08006 replicative DNA helicase; Provisional
Probab=99.54  E-value=9.2e-12  Score=93.95  Aligned_cols=222  Identities=14%  Similarity=0.182  Sum_probs=136.0

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHH-----CCC
Q ss_conf             550147727899972389726880799970687237899999987520-08987999973885566889981-----988
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKL-----GVD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~a~~~-----Gvd  118 (363)
                      +.-||||...||.++  ||+-+|.++-|.|-||.|||+|||+++.++. +.|..|+|+.-|-+-. +.+.++     +|+
T Consensus       204 i~Gi~TGf~~LD~~t--~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fSlEMs~~-ql~~Rlla~~s~v~  280 (471)
T PRK08006        204 VTGVNTGYDDLNKKT--AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGE-QIMMRMLASLSRVD  280 (471)
T ss_pred             CCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHCCCC
T ss_conf             743668838898641--688217389999469987699999999999986699579981679999-99999999744777


Q ss_pred             HHHE-------------------------EEEE--C-CCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             3344-------------------------8972--5-8489999999999744-89768998143332202655434555
Q gi|255764460|r  119 LKNL-------------------------LISQ--P-DTGEQALEITDMLVRS-GAVDIIVIDSVAALTPRAEIEGDMGE  169 (363)
Q Consensus       119 ~~~l-------------------------~~~~--~-~~~E~~~~i~~~li~~-~~~~liViDSi~al~p~~Eie~~~~d  169 (363)
                      ..++                         +++.  | -+..+.-..+..+.+. +.+++||||.+.-+.+...  +   +
T Consensus       281 ~~~i~~g~l~~~e~~~l~~~~~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~gl~lvvIDYLqL~~~~~~--~---~  355 (471)
T PRK08006        281 QTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSL--S---D  355 (471)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC--C---C
T ss_conf             5545368879999999999999997518857736899989999999999998648986899638866167874--4---1


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCEEE
Q ss_conf             3022478887677677776420178189998634114566546-65125--65531111112489750455344577247
Q gi|255764460|r  170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDKDSIT  246 (363)
Q Consensus       170 ~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~~i  246 (363)
                          ....-++..-|.|..++...+|++|.+.|+--..-..-+ -|.-.  -..-++.=-|++.+-+-|-+.-....+.-
T Consensus       356 ----~r~~ei~~isr~lK~lAkel~ipVi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~  431 (471)
T PRK08006        356 ----NRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLK  431 (471)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCC
T ss_conf             ----0668999999999999999699689970168310016999987340224340154286899975503357888878


Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHH
Q ss_conf             679998774057789851589998618742311159
Q gi|255764460|r  247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL  282 (363)
Q Consensus       247 G~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~l  282 (363)
                      | .+.+-|.|||-+|.   ..+++.|..-..+..+|
T Consensus       432 ~-~~elivaKnR~G~~---G~v~l~f~~~~~rF~~~  463 (471)
T PRK08006        432 G-IAEIIIGKQRNGPI---GTVRLTFNGQWSRFDNY  463 (471)
T ss_pred             C-CEEEEEECCCCCCC---EEEEEEEECCCCCCCCC
T ss_conf             8-16999973688986---06999984687754036


No 50 
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.53  E-value=6.5e-13  Score=101.22  Aligned_cols=200  Identities=22%  Similarity=0.339  Sum_probs=133.8

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH---HHHHCCCHHH--
Q ss_conf             01477278999723897268807999706872378999999875200898799997388556688---9981988334--
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY---ARKLGVDLKN--  121 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~---a~~~Gvd~~~--  121 (363)
                      .|++|...||.-|| ||+|.|+++.|-|+.++|||.||.+++..+..+|..+.|+.||.+. .+|   +++++.|+.+  
T Consensus         9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~-refi~qm~sl~ydv~~~~   86 (235)
T COG2874           9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV-REFIKQMESLSYDVSDFL   86 (235)
T ss_pred             HCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHH-HHHHHHHHHCCCCCHHHH
T ss_conf             20678477786516-9974676999988898548899999999887089548999840359-999998886388716877


Q ss_pred             ----EEEEECC---------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             ----4897258---------489999999999744897689981433322026554345553022478887677677776
Q gi|255764460|r  122 ----LLISQPD---------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS  188 (363)
Q Consensus       122 ----l~~~~~~---------~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~  188 (363)
                          +.+++.+         .....|+.+-..++.-..++|||||+.+....++..             ..-.||..+..
T Consensus        87 l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~-------------~vl~fm~~~r~  153 (235)
T COG2874          87 LSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSED-------------AVLNFMTFLRK  153 (235)
T ss_pred             HCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHH-------------HHHHHHHHHHH
T ss_conf             50626899932454225737789999999755775237789995343776526499-------------99999999999


Q ss_pred             HHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCCC--CE
Q ss_conf             420178189998634114566546651256553111111248975045534457724767999-877405778985--15
Q gi|255764460|r  189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASPF--KQ  265 (363)
Q Consensus       189 ~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P~--~~  265 (363)
                      .+..-++.++-.||--      | +..+..   -+.-.|++-++++..+.       =|..++ .+++|-+-++-.  ..
T Consensus       154 l~d~gKvIilTvhp~~------l-~e~~~~---rirs~~d~~l~L~~~~~-------Gg~~~~~~~i~K~~ga~~s~~~~  216 (235)
T COG2874         154 LSDLGKVIILTVHPSA------L-DEDVLT---RIRSACDVYLRLRLEEL-------GGDLIKVLEIVKYRGARKSFQNI  216 (235)
T ss_pred             HHHCCCEEEEEECHHH------C-CHHHHH---HHHHHHHEEEEEEHHHH-------CCEEEEEEEEEEECCCHHHCCCC
T ss_conf             8728978999947343------3-789999---99875202589870231-------78455877876654713321774


Q ss_pred             EEEEEECCCCCCC
Q ss_conf             8999861874231
Q gi|255764460|r  266 VEFDIMYGEGISF  278 (363)
Q Consensus       266 a~~~i~fg~GI~~  278 (363)
                      ..|++.=+.||-.
T Consensus       217 I~F~V~P~~Glkv  229 (235)
T COG2874         217 ISFRVEPGFGLKV  229 (235)
T ss_pred             EEEEECCCCCEEE
T ss_conf             0588559875699


No 51 
>PRK08694 consensus
Probab=99.52  E-value=1.3e-11  Score=92.98  Aligned_cols=223  Identities=16%  Similarity=0.208  Sum_probs=136.0

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHH-----CC
Q ss_conf             65501477278999723897268807999706872378999999875200898-7999973885566889981-----98
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG-TCAFVDAEHALDSIYARKL-----GV  117 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~-~~~~iD~E~~~~~~~a~~~-----Gv  117 (363)
                      .+.-||||...||.++  |||.+|.++-|.|-||.|||+||++++.++...++ .|+|+..|-+-. +.+.++     +|
T Consensus       197 ~~~Gi~TG~~~LD~~t--~Gl~~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLEMs~~-~l~~Rlla~~s~v  273 (468)
T PRK08694        197 EVTGVPTGFIDLDKKT--SGLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGA-QLVMRMLGSVGRL  273 (468)
T ss_pred             CCCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH-HHHHHHHHHHCCC
T ss_conf             8751557968898764--488878479996178653789999999999984798479977889999-9999999972598


Q ss_pred             CHHHEE------------------------EE--EC-CCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             833448------------------------97--25-8489999999999744--8976899814333220265543455
Q gi|255764460|r  118 DLKNLL------------------------IS--QP-DTGEQALEITDMLVRS--GAVDIIVIDSVAALTPRAEIEGDMG  168 (363)
Q Consensus       118 d~~~l~------------------------~~--~~-~~~E~~~~i~~~li~~--~~~~liViDSi~al~p~~Eie~~~~  168 (363)
                      +..++-                        ++  .| -+..+....+..+.+.  +.+++||||-+.=+.+.    +.  
T Consensus       274 ~~~~i~~g~l~~~e~~~~~~a~~~l~~~pl~idd~~~~t~~~i~a~~r~~~~~~~~kl~~vvIDYLqLi~~~----~~--  347 (468)
T PRK08694        274 DQSVLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLIVIDYLQLMAGS----GR--  347 (468)
T ss_pred             CHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCC----CC--
T ss_conf             632110489999999999999999862996897699998879999999999983898738997367541688----87--


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf             53022478887677677776420178189998634114566546-65125--6553111111248975045534457724
Q gi|255764460|r  169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDKDSI  245 (363)
Q Consensus       169 d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~~  245 (363)
                         ......-++..-|.|..++...+|++|...|+--..-..-+ .|.-+  -..-++.=-|++.+-+-|-+.-....+.
T Consensus       348 ---~~~r~~~i~~isr~LK~lAkel~ipvi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqDAD~v~~l~R~~~y~~~~~~  424 (468)
T PRK08694        348 ---SDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPMMSDLRESGAIEQDADLIMFMYRDEYYNQDSPM  424 (468)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCC
T ss_conf             ---65599999999999999999979989996326854233799998713012555105337689996343103889887


Q ss_pred             EEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHH
Q ss_conf             7679998774057789851589998618742311159
Q gi|255764460|r  246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL  282 (363)
Q Consensus       246 iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~l  282 (363)
                      -| .+.+-|.|||-+|.   ..+++.|..-..+..++
T Consensus       425 ~~-~~e~ivaK~R~G~~---G~v~l~f~~~~~rF~~~  457 (468)
T PRK08694        425 KG-LAECIIGKHRNGPV---GKIFLTWTGQFTKFDNA  457 (468)
T ss_pred             CC-EEEEEEECCCCCCC---CEEEEEEECCCCCCCCC
T ss_conf             88-07999970578986---15999985586745056


No 52 
>PRK06749 replicative DNA helicase; Provisional
Probab=99.52  E-value=7.1e-12  Score=94.67  Aligned_cols=217  Identities=19%  Similarity=0.214  Sum_probs=133.5

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH-----HCCC
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556688998-----1988
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK-----LGVD  118 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~-----~Gvd  118 (363)
                      .+.-||||...||.++  |||-+|.++-|.|-||.|||+|||+++.++.+.|..|+|+..|-+-. +.+.+     -||+
T Consensus       165 ~~~Gi~TGf~~LD~lt--~Gl~~g~LiviaaRPsmGKTa~alnia~~~a~~g~~v~~fSlEMs~~-~l~~R~ls~~s~v~  241 (428)
T PRK06749        165 EITGIETGYTSLNKMT--CGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSK-QLLKRMASCVGEVS  241 (428)
T ss_pred             CCCCCCCCHHHHHHHH--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHCCCC
T ss_conf             9876877838898752--49998868999627989768999999999996499279983789999-99999999754998


Q ss_pred             HHHEE---------------------------E-EECC-CHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHH
Q ss_conf             33448---------------------------9-7258-4899999999997448976--89981433322026554345
Q gi|255764460|r  119 LKNLL---------------------------I-SQPD-TGEQALEITDMLVRSGAVD--IIVIDSVAALTPRAEIEGDM  167 (363)
Q Consensus       119 ~~~l~---------------------------~-~~~~-~~E~~~~i~~~li~~~~~~--liViDSi~al~p~~Eie~~~  167 (363)
                      ..++.                           + -.|. |..+....+..+.+....+  +||||.+.-+.+...     
T Consensus       242 ~~~i~~~~~~~~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~g~~~~livIDYlqLi~~~~~-----  316 (428)
T PRK06749        242 GGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKVLIIVDYLQLITGDPK-----  316 (428)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCC-----
T ss_conf             888627767799999999999999985596599758997679999999999997499876999767765057877-----


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCE
Q ss_conf             553022478887677677776420178189998634114566546-651256--55311111124897504553445772
Q gi|255764460|r  168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIRRVGSIKDKDS  244 (363)
Q Consensus       168 ~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~k~~~ik~~~~  244 (363)
                         ..+....-++..-|.|..++...+|++|.+.|+--.+-.... .|.-+-  ..-++.--|.+.+.+-|-+.- +.+.
T Consensus       317 ---~~~~r~~ev~~isr~lK~lAkel~vpvi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y-~~~~  392 (428)
T PRK06749        317 ---HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYY-DKET  392 (428)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCHHHHHCCEEEEECCHHHC-CCCC
T ss_conf             ---777899999999999999999969989997137855233789997601210333024427789997243104-8776


Q ss_pred             EEEEEEEEEEEECCCCCCCCEEEEEEECCCC
Q ss_conf             4767999877405778985158999861874
Q gi|255764460|r  245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEG  275 (363)
Q Consensus       245 ~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~G  275 (363)
                      .--..+.+-|.|||-+|-.   ..++.|..-
T Consensus       393 ~~~~~~eiivaKnR~G~~G---~v~~~f~~~  420 (428)
T PRK06749        393 MQKEMTEIHVAKHRNGPVG---SFKLRFLKE  420 (428)
T ss_pred             CCCCCEEEEEECCCCCCCC---EEEEEEECC
T ss_conf             7888259999725899970---699999768


No 53 
>PRK06904 replicative DNA helicase; Validated
Probab=99.50  E-value=2.8e-11  Score=90.87  Aligned_cols=223  Identities=15%  Similarity=0.178  Sum_probs=132.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHH----HHHHCCCH
Q ss_conf             550147727899972389726880799970687237899999987520-0898799997388556688----99819883
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIY----ARKLGVDL  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~----a~~~Gvd~  119 (363)
                      +.-||||...||.++  |||-+|.++-|+|-||.|||+|||+++.++. +.+..|+|+..|-+-..-.    +..-||+.
T Consensus       201 ~~Gi~TG~~~LD~~t--~Gl~~g~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM~~~~l~~R~ls~~s~v~~  278 (472)
T PRK06904        201 VTGVTTGFTDLDKKT--AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQ  278 (472)
T ss_pred             CCEECCCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCH
T ss_conf             623228979997441--588757579997379875689999999999995599579977879999999999998649998


Q ss_pred             HHE--------------------------EEE-E-C-CCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             344--------------------------897-2-5-84899999999997448-9768998143332202655434555
Q gi|255764460|r  120 KNL--------------------------LIS-Q-P-DTGEQALEITDMLVRSG-AVDIIVIDSVAALTPRAEIEGDMGE  169 (363)
Q Consensus       120 ~~l--------------------------~~~-~-~-~~~E~~~~i~~~li~~~-~~~liViDSi~al~p~~Eie~~~~d  169 (363)
                      .++                          +++ . | -+..+....+..+.+.. .+++||||-+.-+.+...-+     
T Consensus       279 ~~i~~g~~l~~~e~~~~~~~~~~l~~~~~l~idd~~~~t~~~i~~~~r~~~~~~~~l~~vvIDYLqL~~~~~~~~-----  353 (472)
T PRK06904        279 TKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFED-----  353 (472)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCC-----
T ss_conf             886468856099999999999998468981684699999999999999999873899789963886604888777-----


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCC-CEE
Q ss_conf             3022478887677677776420178189998634114566546-65125--6553111111248975045534457-724
Q gi|255764460|r  170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDK-DSI  245 (363)
Q Consensus       170 ~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~-~~~  245 (363)
                          ....-++..-|.|..++...+|++|.+.|+--.+-..-. -|.-.  -..-++.=-|++.+.+-|-+.-.+. ++.
T Consensus       354 ----~r~~ei~~isr~LK~lAkel~ipvi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~  429 (472)
T PRK06904        354 ----NRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDN  429 (472)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHCCCCCCCCC
T ss_conf             ----7889999999999999999799889973268431127999886020225230154286899964420048887677


Q ss_pred             EEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHH
Q ss_conf             7679998774057789851589998618742311159
Q gi|255764460|r  246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL  282 (363)
Q Consensus       246 iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~l  282 (363)
                      -| .+.+-|-|||-+|.   ..+.+.|..-..+..++
T Consensus       430 ~~-~~elivaKnR~G~~---G~v~~~f~~~~~rF~~~  462 (472)
T PRK06904        430 KG-VAEIIIGKQRNGPI---GRVRLAFQGQYSRFDNL  462 (472)
T ss_pred             CC-CEEEEEECCCCCCC---CEEEEEEECCCCCCCCC
T ss_conf             88-37999974778986---16999985787743045


No 54 
>PRK08506 replicative DNA helicase; Provisional
Probab=99.47  E-value=5.9e-11  Score=88.85  Aligned_cols=220  Identities=19%  Similarity=0.238  Sum_probs=131.8

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH-----HHCCCH
Q ss_conf             550147727899972389726880799970687237899999987520089879999738855668899-----819883
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR-----KLGVDL  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~-----~~Gvd~  119 (363)
                      +.-||||...||.++  |||.+|.++-|+|-||.|||+|||+++.++.+.|..|+|+..|-+-. +.+.     .-||+.
T Consensus       173 ~~Gi~TGf~~LD~~t--~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~~V~~FSLEMs~~-ql~~Rlls~~s~V~~  249 (473)
T PRK08506        173 IIGLDTGFKQLNKMT--KGFNKGDLIIIAARPSMGKTTLVLNMVLKALNQGKGVAFFSLEMPAE-QLMLRMLSAKTSIPL  249 (473)
T ss_pred             CCCCCCCHHHHHHHH--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHCCCCC
T ss_conf             534778808788872--69985627999507998678999999999996599658982247999-999999997288783


Q ss_pred             HHEE-------------------------EEE-C-CCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             3448-------------------------972-5-8489999999999744-8976899814333220265543455530
Q gi|255764460|r  120 KNLL-------------------------ISQ-P-DTGEQALEITDMLVRS-GAVDIIVIDSVAALTPRAEIEGDMGESL  171 (363)
Q Consensus       120 ~~l~-------------------------~~~-~-~~~E~~~~i~~~li~~-~~~~liViDSi~al~p~~Eie~~~~d~~  171 (363)
                      .++.                         +.. | -|..+.-..+..+.+. +.+++||||=+.=+.+....    .+  
T Consensus       250 ~~lr~g~l~~~e~~~~~~a~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~~l~livIDYLQLm~~~~~~----~~--  323 (473)
T PRK08506        250 QNLRTGDLDDDEWENLSDACDELSQKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSKNF----KD--  323 (473)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC----CC--
T ss_conf             100068999999999999999986598899889999999999999999997699878996367554688875----30--


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCCCCC--CCCCCCCCCCEEEEEECCCCCC-----CCC
Q ss_conf             2247888767767777642017818999863411456654-6651256--5531111112489750455344-----577
Q gi|255764460|r  172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF-GSPETTT--GGNALKFYSSVRLDIRRVGSIK-----DKD  243 (363)
Q Consensus       172 ~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~-g~p~~~~--GG~al~~~aS~rl~i~k~~~ik-----~~~  243 (363)
                         +..-.+.--|.|..++...++++|.+.|+-=.+-..- .-|.-.-  .--++.--|.+.+.+-|-+.-.     ++.
T Consensus       324 ---R~~ev~~ISr~LK~lAkEl~vPViaLSQLnR~vE~R~dkrP~lSDLReSGsIEQDADvV~flyR~~yY~~~~~~~~~  400 (473)
T PRK08506        324 ---RHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKE  400 (473)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEECCHHHCCCCCCCCCC
T ss_conf             ---88999999999999999969979997036876555789987600113433135437689996527753665333333


Q ss_pred             ---EEEE-------------EEEEEEEEECCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             ---2476-------------79998774057789851589998618742311
Q gi|255764460|r  244 ---SITG-------------NQTRVKVVKNKMASPFKQVEFDIMYGEGISFF  279 (363)
Q Consensus       244 ---~~iG-------------~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~  279 (363)
                         +.-|             ..+.+-|-|||-+|-   ..+.+.|..-+.+.
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~ae~iiaK~RnG~t---G~v~l~f~~~~trF  449 (473)
T PRK08506        401 DKAKKEGKEERRIHKQNKSIEEAEIIIGKNRNGPT---GTVKLIFQKEFTRF  449 (473)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC---CEEEEEEECCCCCC
T ss_conf             32111132111222235677724899965778987---25999986587770


No 55 
>PRK06321 replicative DNA helicase; Provisional
Probab=99.46  E-value=2.6e-11  Score=91.15  Aligned_cols=223  Identities=16%  Similarity=0.203  Sum_probs=136.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHH-----HCCC
Q ss_conf             550147727899972389726880799970687237899999987520089-8799997388556688998-----1988
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARK-----LGVD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E~~~~~~~a~~-----~Gvd  118 (363)
                      +.-||||...||.++  |||-+|.++-|+|-||.|||+|||+++.++...+ ..|+|+..|-+-. +.+.+     -||+
T Consensus       206 itGipTGf~~LD~lt--~Gl~~GdliviaaRPsmGKTalalnia~~~a~~~~~~v~~fSLEMs~~-ql~~R~ls~~s~i~  282 (472)
T PRK06321        206 ISGIPTHFIDLDKMI--NGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD-QLIHRIICSRSEVE  282 (472)
T ss_pred             CCCCCCCHHHHHHHH--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH-HHHHHHHHHHCCCC
T ss_conf             642256848899985--598867579985389997799999999999985699469975779999-99999987403767


Q ss_pred             HHHE------------------------EEEE--C-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             3344------------------------8972--5-84899999999997448976899814333220265543455530
Q gi|255764460|r  119 LKNL------------------------LISQ--P-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL  171 (363)
Q Consensus       119 ~~~l------------------------~~~~--~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~  171 (363)
                      ..++                        +++.  | -+.++.-..+..+.+...+++||||-+.=+.+......      
T Consensus       283 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idd~~~~ti~~i~~~~r~~k~~~~l~~vvIDYlqL~~~~~~~~~------  356 (472)
T PRK06321        283 SKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGTLRN------  356 (472)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCC------
T ss_conf             55210479999999999999999854875786799998999999999998738998799972774167777777------


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf             22478887677677776420178189998634114566546-651256--553111111248975045534457724767
Q gi|255764460|r  172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIRRVGSIKDKDSITGN  248 (363)
Q Consensus       172 ~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~k~~~ik~~~~~iG~  248 (363)
                      ......-.+..-|.|..++...++++|.+.|+--.+-...+ .|.-.-  ..-++.=-|++.+.+-|.+. .+.++.-| 
T Consensus       357 ~~~r~~~i~~isr~lK~lAkel~vpvi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~V~~l~R~~~-~~~~~~~~-  434 (472)
T PRK06321        357 SESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREY-YDPNDKPG-  434 (472)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHH-CCCCCCCC-
T ss_conf             8889999999999999999997997999722684312279999762301264410430868999744532-49878898-


Q ss_pred             EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCH
Q ss_conf             999877405778985158999861874231115
Q gi|255764460|r  249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE  281 (363)
Q Consensus       249 ~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~  281 (363)
                      .+.+-|.|||-+|-   ...++.|..-+.+..+
T Consensus       435 ~~e~ivaK~R~G~~---g~v~~~f~~~~~rF~n  464 (472)
T PRK06321        435 TAELIVAKNRHGSI---GSVPLVFEKEFARFRN  464 (472)
T ss_pred             CEEEEEECCCCCCC---CEEEEEEECCCCCCCC
T ss_conf             26999972678987---2599998568676225


No 56 
>PRK07773 replicative DNA helicase; Validated
Probab=99.31  E-value=6.2e-10  Score=82.40  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=103.2

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHH-----HCC
Q ss_conf             655014772789997238972688079997068723789999998752-00898799997388556688998-----198
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIYARK-----LGV  117 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~~~~~iD~E~~~~~~~a~~-----~Gv  117 (363)
                      .+.-||||...||.++  ||+-+|.++-|.|-||.|||+|||.++.++ .+.+..++++..|.+-. +.+.+     -+|
T Consensus       182 ~l~GvpTG~~~ld~~~--~g~~~~~l~i~a~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSLEMs~~-ql~~Rlls~~~~i  258 (868)
T PRK07773        182 LAPGVPTGFYDLDEMT--NGLHPGQMIIVAARPGVGKSTLGLDFARSCSIRHRLASVIFSLEMSKE-EIVMRLLSAEAKI  258 (868)
T ss_pred             CCCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH-HHHHHHHHHHCCC
T ss_conf             9878688979998763--188877679998289777778999999999986599658973056788-9999999876078


Q ss_pred             CHHHE------------------------EEEE--C-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             83344------------------------8972--5-8489999999999744897689981433322026554345553
Q gi|255764460|r  118 DLKNL------------------------LISQ--P-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES  170 (363)
Q Consensus       118 d~~~l------------------------~~~~--~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~  170 (363)
                      |..++                        +|+.  | -+..+.-.-+..|-+.+.+++||||-+.-|.+....+..    
T Consensus       259 ~~~~lr~G~l~~~~~~~~~~a~~~l~~~pl~IdDtp~isi~eirakaRrlk~~~~l~lIvvDYLQLm~~~~~~~~R----  334 (868)
T PRK07773        259 KLSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSPNLTMMEIRSKARRLQQKANLKLIVVDYLQLMTSGKKYESR----  334 (868)
T ss_pred             CHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCH----
T ss_conf             7766416888989999999999998619888847999999999999999865269988999615524789887629----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             0224788876776777764201781899986341
Q gi|255764460|r  171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                           ..-+|..-|-|..++..-++++|.+.|+-
T Consensus       335 -----~qevs~isr~LK~lAkeL~vPVialsQl~  363 (868)
T PRK07773        335 -----QQEVSEFSRHLKLLAKELEVPVIALSQLN  363 (868)
T ss_pred             -----HHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             -----89999998999999987589789871036


No 57 
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.27  E-value=4.2e-09  Score=77.14  Aligned_cols=236  Identities=19%  Similarity=0.233  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99999999999867618873797036655334655014772789997238972688079997068723789999998752
Q gi|255764460|r   12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS   91 (363)
Q Consensus        12 k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~   91 (363)
                      -...+...+..|++.|..+.             +.-||||...||..+  +|+-+|.++-+++-||-|||+||+.++.++
T Consensus       156 ~~~~l~~~~~~i~~~~~~~~-------------~~Gi~tgf~~LD~~t--~G~~~~dLiilAaRP~mGKTafalnia~n~  220 (435)
T COG0305         156 IGDLLKETMDEIEARFENGG-------------LIGVPTGFTDLDEIT--SGFRPGDLIIVAARPGMGKTALALNIALNA  220 (435)
T ss_pred             HHHHHHHHHHHHHHHHCCCC-------------CCCCCCCCHHHHHHH--CCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             88999999999998735578-------------851446834567773--377467779971689997589999999999


Q ss_pred             HH-CCCEEEEEECCCCCCHHHHHHH-----CCCHHHEEEEECC---------------------------CHHHHHHHHH
Q ss_conf             00-8987999973885566889981-----9883344897258---------------------------4899999999
Q gi|255764460|r   92 QK-TGGTCAFVDAEHALDSIYARKL-----GVDLKNLLISQPD---------------------------TGEQALEITD  138 (363)
Q Consensus        92 qk-~g~~~~~iD~E~~~~~~~a~~~-----Gvd~~~l~~~~~~---------------------------~~E~~~~i~~  138 (363)
                      .. .+..++++..|-+-. +++.++     +|+..++.--+.+                           +.-+.-.-+.
T Consensus       221 a~~~~~~v~iFSLEM~~e-ql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aR  299 (435)
T COG0305         221 AADGRKPVAIFSLEMSEE-QLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKAR  299 (435)
T ss_pred             HHHCCCCEEEEECCCCHH-HHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHH
T ss_conf             985589759998267999-9999753401154510021254268999999999998761785433788887888999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC------CCC
Q ss_conf             99744897689981433322026554345553022478887677677776420178189998634114566------546
Q gi|255764460|r  139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV------MFG  212 (363)
Q Consensus       139 ~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~------m~g  212 (363)
                      .+.++..+++||||.+.-+....--         -......|..-|.|..++..-++++|.+.|+.-.+-.      |.-
T Consensus       300 rlk~~~~l~liviDYLQLm~~~~~~---------~~R~qevseISr~LK~LAkEL~vPvIAlSQLsR~~E~R~dkrP~lS  370 (435)
T COG0305         300 RLKLKHNLGLIVIDYLQLMTGGKKS---------ENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLS  370 (435)
T ss_pred             HHHHHCCCCEEEEEEEEECCCCCCC---------CHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHCCCCCCCCC
T ss_conf             8887459738998865411367764---------1268899999999999998748808864452441121145687555


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             6512565531111112489750455344577247679998774057789851589998618742311
Q gi|255764460|r  213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF  279 (363)
Q Consensus       213 ~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~  279 (363)
                      + -.-+|  ++..-|.+.+.+.|.+. .+.+..-+..+.+.|.|||-+|-.   .+.+.|...+.+.
T Consensus       371 D-LRESG--sIEQDADiVmflyRde~-y~~~~~~~g~aeiIi~K~RnGp~G---tV~l~f~~~~~~F  430 (435)
T COG0305         371 D-LRESG--ALEQDADIVIFLHRDEA-YLKDTPDRGEAEVIVAKNRNGPTG---TVKLAFDPQFTKF  430 (435)
T ss_pred             C-CCCCC--CHHHHCCEEEEEECHHH-CCCCCCCCCEEEEEEEECCCCCCC---EEEEEEECCCCCC
T ss_conf             6-75578--43665778999814232-267778886289998743689874---5999983465430


No 58 
>cd01125 repA Hexameric Replicative Helicase RepA.  RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.15  E-value=1.9e-09  Score=79.33  Aligned_cols=188  Identities=19%  Similarity=0.226  Sum_probs=109.6

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHH------------HCCCEEEEEECCCCCCH--HHH----HHHCCC-H-HHEEEE-
Q ss_conf             80799970687237899999987520------------08987999973885566--889----981988-3-344897-
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQ------------KTGGTCAFVDAEHALDS--IYA----RKLGVD-L-KNLLIS-  125 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~q------------k~g~~~~~iD~E~~~~~--~~a----~~~Gvd-~-~~l~~~-  125 (363)
                      |.+..++||+++|||+|+|+++....            ...|.|+|+..|...+-  .++    ..++.+ . .++++. 
T Consensus         1 G~v~~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~~~l~rRl~a~~~~~~~~~~~~rl~~~~   80 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS   80 (239)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf             93899980899888999999999997599656898546877619999788998999999999998638665554166415


Q ss_pred             ---EC------C--CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             ---25------8--489999999999744897689981433322026554345553022478887677677776420178
Q gi|255764460|r  126 ---QP------D--TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK  194 (363)
Q Consensus       126 ---~~------~--~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~  194 (363)
                         +|      +  .....++.+.+.+....++|||||.+.+...     ++  +.    .+..|..+++.+..++.+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~LVViDpL~~~~~-----~d--EN----d~~~m~~~i~~l~~ia~~tg  149 (239)
T cd01125          81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHG-----VS--EN----DNGAMDAVIKALRRIAAQTG  149 (239)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHCC-----CC--CC----CHHHHHHHHHHHHHHHHHCC
T ss_conf             566644133577210148999999997458998999838177489-----99--78----89999999999999999719


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC---CC--CCCEEEEEEEEEEEEECCCCCCCCE
Q ss_conf             18999863411456654665125655311111124897504553---44--5772476799987740577898515
Q gi|255764460|r  195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS---IK--DKDSITGNQTRVKVVKNKMASPFKQ  265 (363)
Q Consensus       195 ~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~---ik--~~~~~iG~~v~~kv~Knk~~~P~~~  265 (363)
                      |+++++.|.+---+..-.+..-.-|..||.-.+=.-..+.++..   .+  -.++.-+..+++-+.|+-.+||-..
T Consensus       150 ~aVl~vHHt~K~~~~~~~~~~a~RGaSaLvd~aR~~~~l~~m~~~ea~~~gi~~~~~~~~~r~~~~k~n~~~~~~~  225 (239)
T cd01125         150 AAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEA  225 (239)
T ss_pred             CEEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHCCCCEEEECCCCCCCCCCCCC
T ss_conf             9999970688767887104434664877432354766773799999998299801068769963431026999976


No 59 
>PRK05973 replicative DNA helicase; Provisional
Probab=98.86  E-value=5.1e-08  Score=70.26  Aligned_cols=167  Identities=28%  Similarity=0.291  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99999999999867618873797036655334655014772789997238972688079997068723789999998752
Q gi|255764460|r   12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS   91 (363)
Q Consensus        12 k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~   91 (363)
                      ..-.|..|+++|..+-|-.+---|.         ...+-.+++-.  | .||+.+|-++-|.|-||-|||+|||.++.++
T Consensus        21 ~~i~lh~ald~ia~~egf~~ws~l~---------~~~~~~~pa~~--l-~~gLqPGDLIIlAARPsMGKTafaLnla~~A   88 (237)
T PRK05973         21 QNIPLHEALDQIAATEGFSRWSLLA---------AKAAATTPAEE--L-FGQLRPGDLVLLGARPGQGKTLLGLELAVEA   88 (237)
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHHH---------HHHCCCCCHHH--H-HCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             4885789999999862712168888---------76303695899--8-5689986779994289887899999999999


Q ss_pred             HHCCCEEEEEECCCCCCH--HHHHHHCCCHH---HEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             008987999973885566--88998198833---4489725848999999999974489768998143332202655434
Q gi|255764460|r   92 QKTGGTCAFVDAEHALDS--IYARKLGVDLK---NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD  166 (363)
Q Consensus        92 qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~---~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~  166 (363)
                      .+.|..++|+.-|-+-.-  .+...+|.+..   +++.......--+-.++..+.+....++||||=+.=|-.+.+    
T Consensus        89 ~k~g~~v~fFSLEM~~~ql~~RL~~~~~~~~~~~~~~~iD~sd~i~~~~i~rrl~~~~~~~LIVIDYLQLM~~~r~----  164 (237)
T PRK05973         89 MKSGRTGVFFTLEYTEKDVLDRLRALGVDRAQFADLFEFDTSDAICADYIIARLASAPRGTLVVIDYLQLLDQRRE----  164 (237)
T ss_pred             HHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHCCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCCCC----
T ss_conf             9959966999615999999999997277833406751003830333999999985278996899976775266778----


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             5553022478887677677776420178189998634
Q gi|255764460|r  167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM  203 (363)
Q Consensus       167 ~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~  203 (363)
                        ...+       +.-.|-|...+.+.+|++|++.|+
T Consensus       165 --~~ei-------seisRsLK~lAkEl~vPVvaLSQL  192 (237)
T PRK05973        165 --KPDL-------SVQVRALKSFARKRGVILVFISQI  192 (237)
T ss_pred             --CCCH-------HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             --8668-------999999999999869939994003


No 60 
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72  E-value=4.2e-07  Score=64.46  Aligned_cols=145  Identities=23%  Similarity=0.288  Sum_probs=87.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             88079997068723789999998752008987999973885566889981988334489725848999999999974489
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA  145 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~  145 (363)
                      .++.+.++||+||||||++..++.+..+....++|++.+...........  .........+...+.....+...++...
T Consensus         1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK   78 (148)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH--HHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99789999999702999999999872668996899875998988898765--3000112210519999999999998449


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             76899814333220265543455530224788876776777764201781899986341145665466512565531111
Q gi|255764460|r  146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF  225 (363)
Q Consensus       146 ~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~  225 (363)
                      .++|++|.+..+.+.......           .+....+.........++.+|++++.           ...++...+.+
T Consensus        79 ~~viiiDei~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~vi~~~n~-----------~~~~~~~~~~~  136 (148)
T smart00382       79 PDVLILDEITSLLDAEQEALL-----------LLLEELRLLLLLKSEKNLTVILTTND-----------EKDLGPALLRR  136 (148)
T ss_pred             CCEEEEECCHHHCCCCCHHHH-----------HHHHHHHHHCCCCCCCCEEEEEEECC-----------CCCCCHHHHCC
T ss_conf             989998275021476207999-----------99999998517657899899995699-----------52249877074


Q ss_pred             CCCEEEEEE
Q ss_conf             112489750
Q gi|255764460|r  226 YSSVRLDIR  234 (363)
Q Consensus       226 ~aS~rl~i~  234 (363)
                      ..+.++.+.
T Consensus       137 ~~~~~~~~~  145 (148)
T smart00382      137 RFDRRIVLL  145 (148)
T ss_pred             CCCEEEEEE
T ss_conf             478799982


No 61 
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503    The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC.    A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=98.62  E-value=1e-07  Score=68.32  Aligned_cols=143  Identities=23%  Similarity=0.352  Sum_probs=88.3

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCH--HHHHHHCCCHHH--
Q ss_conf             0147727899972389726880799970687237899999987520-08987999973885566--889981988334--
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDS--IYARKLGVDLKN--  121 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~--  121 (363)
                      .+.|.+-.+|-+. .||+|.||-|.+.|..++|||.++++++.+-. .-+...+|+..|.+-.-  ..|..+|-|+.+  
T Consensus         2 k~~t~ieGfdd~~-~GGlP~Gr~tl~sGtsGtGkt~~~~~fl~~Gi~~fd~P~~fvtfee~P~di~~na~~fGW~l~~l~   80 (484)
T TIGR02655         2 KLRTMIEGFDDIS-HGGLPIGRSTLVSGTSGTGKTLFSLQFLYNGIVHFDEPGVFVTFEESPKDIIKNAASFGWDLQKLV   80 (484)
T ss_pred             CCCCCCCCCHHHH-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCHHHHHH
T ss_conf             5432103511220-488343540366236764347777778887565407870599863785899977775040078885


Q ss_pred             ----EEEE--ECCC-HHH---------HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             ----4897--2584-899---------99999999744897689981433322026554345553022478887677677
Q gi|255764460|r  122 ----LLIS--QPDT-GEQ---------ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK  185 (363)
Q Consensus       122 ----l~~~--~~~~-~E~---------~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk  185 (363)
                          |++.  .||- +.+         .++-+...++.-.-.-+-|||+.+..-+  .+.          +....+.+-+
T Consensus        81 ~~~klfildasPdP~Gq~~~G~fdls~lier~~yai~ky~a~rv~ids~t~vfqq--y~a----------~~vvrre~fr  148 (484)
T TIGR02655        81 DEGKLFILDASPDPEGQDVVGEFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQ--YDA----------VSVVRREIFR  148 (484)
T ss_pred             HCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHH--HHH----------HHHHHHHHHH
T ss_conf             1596799966889975514403107899999999987641000003466656764--212----------5678899999


Q ss_pred             HHHHHCCCCCEEEEEEC
Q ss_conf             77642017818999863
Q gi|255764460|r  186 LTSSISRSKCILVFINQ  202 (363)
Q Consensus       186 l~~~~~k~~~~~i~iNQ  202 (363)
                      |...+.+-+++.|++..
T Consensus       149 l~arlk~~~~ttv~tte  165 (484)
T TIGR02655       149 LVARLKQIGVTTVMTTE  165 (484)
T ss_pred             HHHHHHHCCCEEEEEEC
T ss_conf             99988651503688532


No 62 
>KOG2859 consensus
Probab=98.43  E-value=4.8e-06  Score=57.81  Aligned_cols=135  Identities=21%  Similarity=0.268  Sum_probs=77.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHH---HCCC---EEEEEECCCCCCHHHHHHH------------------------
Q ss_conf             880799970687237899999987520---0898---7999973885566889981------------------------
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG---TCAFVDAEHALDSIYARKL------------------------  115 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~q---k~g~---~~~~iD~E~~~~~~~a~~~------------------------  115 (363)
                      .|.++||.||+.||||.+..|++|.+.   +-||   .|+|||..+.||..+..++                        
T Consensus        37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~  116 (293)
T KOG2859          37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQL  116 (293)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             68679986899861889999998883545344885069999964441129999999999998731223555128837679


Q ss_pred             ----CCCHHHEEEEECC-CHHHHHHHH--H-HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             ----9883344897258-489999999--9-9974489768998143332202655434555302247888767767777
Q gi|255764460|r  116 ----GVDLKNLLISQPD-TGEQALEIT--D-MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT  187 (363)
Q Consensus       116 ----Gvd~~~l~~~~~~-~~E~~~~i~--~-~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~  187 (363)
                          |-=+.|++++.+- +-+-...+.  . .++......++++||++|..=-.+...-..-..+-+.-|.+++-|.||.
T Consensus       117 eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeKL~  196 (293)
T KOG2859         117 EEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEKLC  196 (293)
T ss_pred             HHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998667899861547899999999999846975067761003252430355317665268889999999999997


Q ss_pred             HHHCCCCCEEEEEECC
Q ss_conf             6420178189998634
Q gi|255764460|r  188 SSISRSKCILVFINQM  203 (363)
Q Consensus       188 ~~~~k~~~~~i~iNQ~  203 (363)
                      ..   +...+..|-|.
T Consensus       197 ~d---~~lv~~aT~~t  209 (293)
T KOG2859         197 KD---AILVGMATVET  209 (293)
T ss_pred             HH---HEEEEEEEHHH
T ss_conf             44---24666642157


No 63 
>COG4544 Uncharacterized conserved protein [Function unknown]
Probab=98.34  E-value=2e-06  Score=60.20  Aligned_cols=191  Identities=19%  Similarity=0.246  Sum_probs=119.4

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHH--HHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHCCCHH
Q ss_conf             6550147727899972389726880799970687237899--999987520089879999738-8556688998198833
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL--ALHTIAQSQKTGGTCAFVDAE-HALDSIYARKLGVDLK  120 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtl--al~~~a~~qk~g~~~~~iD~E-~~~~~~~a~~~Gvd~~  120 (363)
                      .-..+|-|.+.+|.+|.+||++.|-|.|+.|--..--+-+  ||-+..-.++.++.++||-+- .-|-|. ..++|+|++
T Consensus        31 ~~~~LpfGvp~~Da~lpGGglalg~ihe~~ggg~ga~~GaAaAl~~~g~~~r~~gpVvWi~tr~dlf~pa-L~~~Gl~~~  109 (260)
T COG4544          31 RAGILPFGVPPIDAALPGGGLALGEIHELEGGGAGAADGAAAALAVLGLAARRGGPVVWILTREDLFPPA-LAAFGLDPE  109 (260)
T ss_pred             CCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH-HHHCCCCHH
T ss_conf             4650036887133226786155555651167774102307999998754104579879998533346403-755389943


Q ss_pred             HEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             44897258489999999999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r  121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI  200 (363)
Q Consensus       121 ~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i  200 (363)
                      +++++++.+.+++|.++++-++-+.+.-||.          |+.           .-.|+ +=|+|.-.+.+.+.+++.+
T Consensus       110 RlifVea~~e~dvL~~~EeaLs~~g~aaVV~----------Ei~-----------~L~lt-asRRLqlaae~~G~~~l~l  167 (260)
T COG4544         110 RLIFVEARKEEDVLWNAEEALSFGGLAAVVA----------EIR-----------RLDLT-ASRRLQLAAEAAGVPGLVL  167 (260)
T ss_pred             HEEEEECCCHHHHHHHHHHHHCCCCHHHEEE----------EEE-----------ECCCC-HHHHHHHHHHHCCCCEEEE
T ss_conf             5899867708889999987631464431245----------444-----------14531-4478899987459837999


Q ss_pred             E-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE-EEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf             6-34114566546651256553111111248975045534457724767-999877405778985158999861
Q gi|255764460|r  201 N-QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN-QTRVKVVKNKMASPFKQVEFDIMY  272 (363)
Q Consensus       201 N-Q~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~-~v~~kv~Knk~~~P~~~a~~~i~f  272 (363)
                      - |..+  ..-||-|+      +  -.+-.|+..+.+...-  ..-+|. ...+.+.|||-+.|   .+|.+.+
T Consensus       168 Rrr~~e--~~~~g~p~------a--~vsrwri~~~Ps~~~p--~~gvGrP~w~lel~r~R~g~~---g~f~lea  226 (260)
T COG4544         168 RRRAAE--AEAFGQPT------A--AVSRWRISPRPSEPLP--VPGVGRPAWFLELERSRAGEC---GEFILEA  226 (260)
T ss_pred             ECCCCC--CCCCCCCC------C--EECCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHCCCCC---CCEEEEE
T ss_conf             614577--65456852------2--0034423457888899--998876026675355326888---5168983


No 64 
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31  E-value=2.3e-05  Score=53.51  Aligned_cols=95  Identities=28%  Similarity=0.372  Sum_probs=66.8

Q ss_pred             HHHCCCCCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH-------HHHHHCCCHHH
Q ss_conf             972389726--------880799970687237899999987520089879999738855668-------89981988334
Q gi|255764460|r   57 IALGIGGFP--------KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI-------YARKLGVDLKN  121 (363)
Q Consensus        57 ~~Lg~GG~p--------~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~-------~a~~~Gvd~~~  121 (363)
                      .++| |++|        .||++.+.|+.|+||||.+-.+++..+++|..|+.+-+. +|++.       |++++||..  
T Consensus       189 ~~~~-~~~~~~~~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaD-TFRaAAiEQLk~~g~rlgVpV--  264 (407)
T PRK12726        189 PYLS-GKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD-TFRSGAVEQFQGYADKLDVEL--  264 (407)
T ss_pred             HHHC-CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCEE--
T ss_conf             9753-897703202303690899989998978999999999999779917999706-677889999999999979649--


Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             4897258489999999999744897689981433322
Q gi|255764460|r  122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       122 l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                       +.. .+ ....-..+..+.....+|+|+||-.+-+.
T Consensus       265 -~~~-~d-pa~l~~av~~~a~~~~~DvVIIDTAGRl~  298 (407)
T PRK12726        265 -IVA-TS-PAELEEAVQYMTYVNCVDHILIDTVGRNY  298 (407)
T ss_pred             -EEE-CC-HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             -981-88-89999999999862899989996999881


No 65 
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=98.28  E-value=2.9e-05  Score=52.87  Aligned_cols=130  Identities=22%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHH----------HHHHCCCEEEEEECCCCCCHH-------HHHHHCCCHHHEEE
Q ss_conf             9726880799970687237899999987----------520089879999738855668-------89981988334489
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIA----------QSQKTGGTCAFVDAEHALDSI-------YARKLGVDLKNLLI  124 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a----------~~qk~g~~~~~iD~E~~~~~~-------~a~~~Gvd~~~l~~  124 (363)
                      +=+..|-..-+||+.+.||||++|.++-          +.++.-|.|+|+..|-.= ++       ...++|+-+.++-.
T Consensus        84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r-e~~L~Rl~~v~a~mgLsPadvrn  162 (402)
T COG3598          84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR-EDILERLEPVRARMGLSPADVRN  162 (402)
T ss_pred             HHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCH-HHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             77651705898448862376899999999986477745335588807999822686-88999999999870998576322


Q ss_pred             EEC----------CCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             725----------84899-9999999974489768998143332202655434555302247888767767777642017
Q gi|255764460|r  125 SQP----------DTGEQ-ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS  193 (363)
Q Consensus       125 ~~~----------~~~E~-~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~  193 (363)
                      .+-          |-.+- .++-.+..+++--.++||||+..+...-.++        ...+-+.+-+.+||+..   ..
T Consensus       163 ~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~--------s~vqv~~fi~~~rkla~---~l  231 (402)
T COG3598         163 MDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSI--------SDVQVKEFIKKTRKLAR---NL  231 (402)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCC--------HHHHHHHHHHHHHHHHH---HC
T ss_conf             00002456787200105899999999998747874997344542277411--------16899999999999998---62


Q ss_pred             CCEEEEEECC
Q ss_conf             8189998634
Q gi|255764460|r  194 KCILVFINQM  203 (363)
Q Consensus       194 ~~~~i~iNQ~  203 (363)
                      .|.+|++.|.
T Consensus       232 ~caIiy~hHt  241 (402)
T COG3598         232 ECAIIYIHHT  241 (402)
T ss_pred             CCEEEEEECC
T ss_conf             7739999445


No 66 
>KOG0733 consensus
Probab=98.24  E-value=1.7e-05  Score=54.35  Aligned_cols=28  Identities=36%  Similarity=0.434  Sum_probs=15.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             7268807999706872378999999875
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      |+-+-|=+.+-|||+||||.||-.++.+
T Consensus       219 Gv~PprGvLlHGPPGCGKT~lA~AiAge  246 (802)
T KOG0733         219 GVRPPRGVLLHGPPGCGKTSLANAIAGE  246 (802)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             8779975164489986478999997521


No 67 
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.19  E-value=8.4e-06  Score=56.27  Aligned_cols=122  Identities=18%  Similarity=0.302  Sum_probs=76.2

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC----HHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             79997068723789999998752008987999973885566889981988----33448972584899999999997448
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSG  144 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd----~~~l~~~~~~~~E~~~~i~~~li~~~  144 (363)
                      ||.|.|...||||.+|.+++..   .++.++||-|-..+|+++.+++-.-    ...+     .|.|+..++.+.+-...
T Consensus         1 iiLVtGG~rSGKS~~AE~la~~---~~~~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w-----~TiE~~~~l~~~l~~~~   72 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHW-----RTIETPRDLVSALKELD   72 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC-----EEEECCCCHHHHHHHCC
T ss_conf             9899778663689999999984---599819997889889899999999996689996-----69963443999998559


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf             97689981433322026554345553022478887677677776420-1781899986341
Q gi|255764460|r  145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS-RSKCILVFINQMR  204 (363)
Q Consensus       145 ~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~-k~~~~~i~iNQ~r  204 (363)
                      ..++|+||+++.+.+..-.... +..    ...+ ...+..+...+. .....+|++|.+-
T Consensus        73 ~~~~vLiDclt~wl~N~l~~~~-~~~----~~~~-~~~i~~l~~~l~~~~~~~ViVSnEVG  127 (169)
T cd00544          73 PGDVVLIDCLTLWVTNLLFADL-EEW----EAAI-ADEIDALLAAVRNKPGTLILVSNEVG  127 (169)
T ss_pred             CCCEEEEECHHHHHHHHHHCCC-CHH----HHHH-HHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             8885998607899999874133-123----6679-99999999999708997999965877


No 68 
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=98.19  E-value=1.5e-05  Score=54.72  Aligned_cols=110  Identities=19%  Similarity=0.341  Sum_probs=74.5

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCC-HHHHHHH---CCCH
Q ss_conf             55014772789997238972688079997068723789999998752008987999973-88556-6889981---9883
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA-EHALD-SIYARKL---GVDL  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~-E~~~~-~~~a~~~---Gvd~  119 (363)
                      -+.+.||+.++|.++.   +.+|.=..|+|..++|||++|+.++.+....+-.|+|.-- |..-. .++.+.+   |. +
T Consensus       144 ~epL~TGIkaID~l~P---iGrGQR~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGeR~reV~~~i~~l~~~ga-m  219 (501)
T CHL00059        144 YEPLQTGLIAIDSMIP---IGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGA-M  219 (501)
T ss_pred             CCCCCCCCEEEECCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCC-C
T ss_conf             7423234211100367---66775667755788447799999998524688489999855627789999999975697-1


Q ss_pred             HH--EEEEECC-C-HHH------HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             34--4897258-4-899------99999999744897689981433322
Q gi|255764460|r  120 KN--LLISQPD-T-GEQ------ALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~--l~~~~~~-~-~E~------~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      ++  +++++.+ + ..+      ++.|+|.+...|.-.|+|+||++-..
T Consensus       220 ~~TvvV~Atadepa~lr~~Apyaa~aIAEyFrdqGkdVLlv~DdLTr~A  268 (501)
T CHL00059        220 EYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA  268 (501)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
T ss_conf             0369996179999999999999999999999977982899986826988


No 69 
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.17  E-value=3.6e-05  Score=52.23  Aligned_cols=85  Identities=21%  Similarity=0.384  Sum_probs=58.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHHHHHH--
Q ss_conf             079997068723789999998752008987999973885566-------88998198833448972584899999999--
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQALEITD--  138 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~--  138 (363)
                      .++.+.||+++||||.+..+++.++++|..+++|.+. ++++       .|++.+|+.+-.     .++.++..+++.  
T Consensus         1 ~Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~D-t~R~gA~eQL~~~a~~l~v~~~~-----~~~~~~~~~~~~~~   74 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD-TYRPAAIEQLRVLGEQVGVPVFE-----EGEGKDPVSIAKRA   74 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHHHHHHHHCCCEEEE-----CCCCCCHHHHHHHH
T ss_conf             9999989999988999999999999769928999748-87577999999999974985992-----27755879999999


Q ss_pred             -HHHHCCCCCEEEEECCCCCC
Q ss_conf             -99744897689981433322
Q gi|255764460|r  139 -MLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       139 -~li~~~~~~liViDSi~al~  158 (363)
                       ...+....|+|+||..+-..
T Consensus        75 ~~~~~~~~~D~IlIDTaGr~~   95 (173)
T cd03115          75 IEHAREENFDVVIVDTAGRLQ   95 (173)
T ss_pred             HHHHHHCCCCEEEEECCCCCC
T ss_conf             999875689989997888787


No 70 
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.14  E-value=7.7e-05  Score=50.19  Aligned_cols=85  Identities=19%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH-------HHHHHCCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             0799970687237899999987520089879999738855668-------899819883344897258489999999999
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI-------YARKLGVDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~-------~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
                      +++.+.||.|+||||.+-.+++..++.+..++.+-+. +++|.       |++.+|+..-     ........-..+..+
T Consensus        76 ~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~D-tyR~aA~eQLk~~a~~l~v~~~-----~~~~~~~~~~~~~~~  149 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-----AVRDEAAMTRALTYF  149 (270)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC-CCCHHHHHHHHHHHHHHCCCEE-----CCCCHHHHHHHHHHH
T ss_conf             1899988898988999999999998679908999838-8888899999999998199535-----458878999999999


Q ss_pred             HHCCCCCEEEEECCCCCC
Q ss_conf             744897689981433322
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       141 i~~~~~~liViDSi~al~  158 (363)
                      -+.+.+|+|+||..+-+.
T Consensus       150 ~~~~~~DvilIDTAGR~~  167 (270)
T PRK06731        150 KEEARVDYILIDTAGKNY  167 (270)
T ss_pred             HHHCCCCEEEEECCCCCC
T ss_conf             997699999997999871


No 71 
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=98.13  E-value=1.2e-05  Score=55.20  Aligned_cols=113  Identities=17%  Similarity=0.297  Sum_probs=74.9

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHH-CC-C
Q ss_conf             465501477278999723897268807999706872378999999875200898799997-388556-6889981-98-8
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD-AEHALD-SIYARKL-GV-D  118 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD-~E~~~~-~~~a~~~-Gv-d  118 (363)
                      ..-+.+.||+.++|.++.   +-+|.=.-|+|++++|||+++++.+.+....+-.|+|.- .|..-. .++.+.+ +- -
T Consensus        48 ~i~e~l~TGI~aID~l~p---ig~GQr~~If~~~g~GKt~l~~~~i~~~~~~~~~~V~~~IGer~rEv~ef~~~~~~~~~  124 (274)
T cd01132          48 SVNEPLQTGIKAIDAMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGA  124 (274)
T ss_pred             CCCCCCCCCCEEEECCCC---CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             878611038345413466---24786751558887557889999999741369659999732452269999998760576


Q ss_pred             HHH--EEEEECC-C-------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             334--4897258-4-------89999999999744897689981433322
Q gi|255764460|r  119 LKN--LLISQPD-T-------GEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       119 ~~~--l~~~~~~-~-------~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +++  +++.+.+ .       ..-++.++|.+...|.--|+++||+....
T Consensus       125 l~~tv~v~~t~~~p~~~r~~a~~~a~~iAEyfrd~Gk~VLll~DslTr~A  174 (274)
T cd01132         125 MEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQA  174 (274)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECHHHHH
T ss_conf             20114774047787587776544122267899877994799997889999


No 72 
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=98.12  E-value=5.5e-05  Score=51.09  Aligned_cols=112  Identities=21%  Similarity=0.353  Sum_probs=74.6

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHH---C-C
Q ss_conf             65501477278999723897268807999706872378999999875200898799997-388556-6889981---9-8
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD-AEHALD-SIYARKL---G-V  117 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD-~E~~~~-~~~a~~~---G-v  117 (363)
                      .-+.+.||+.++|.++.   +.+|.=..|+|..++|||++|+.++.+....+..|+|+- .|..-. .++.+.+   | +
T Consensus       142 V~epL~TGIkaID~l~P---iGrGQR~lIiGd~gtGKT~iaidtIinqk~~~vicVyvaIGer~seV~~~v~~L~~~gal  218 (502)
T PRK09281        142 VHEPLQTGIKAIDAMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVANVVRKLEEHGAM  218 (502)
T ss_pred             CCCCCCCCHHHHHHCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf             67523311355541256---568756675247873388999999985325883699998512217899999987544864


Q ss_pred             CHHHEEEEECC-C-HHH------HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             83344897258-4-899------99999999744897689981433322
Q gi|255764460|r  118 DLKNLLISQPD-T-GEQ------ALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       118 d~~~l~~~~~~-~-~E~------~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +-.-++.++.+ . ..+      ++.++|.+...|.--|+|+||++-..
T Consensus       219 ~~TvvV~ata~dpa~lr~~Apyaa~aIAEyFrd~G~dVLlv~DdLtr~A  267 (502)
T PRK09281        219 EYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQA  267 (502)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf             1137997179999999999999999999999967994899985568999


No 73 
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.07  E-value=5.2e-05  Score=51.28  Aligned_cols=81  Identities=22%  Similarity=0.369  Sum_probs=54.9

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             68807999706872378999999875200898799997388556688998198833448972584899999999997448
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG  144 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~  144 (363)
                      +..+-+.++||||+|||++|-.++.+....+..+++++...-......+... +..            ............
T Consensus        17 ~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~   83 (151)
T cd00009          17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF-GHF------------LVRLLFELAEKA   83 (151)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHH-HHH------------HHHHHHHHHHHC
T ss_conf             7998089989999886599999999712137982785477704677775760-577------------889899999976


Q ss_pred             CCCEEEEECCCCCC
Q ss_conf             97689981433322
Q gi|255764460|r  145 AVDIIVIDSVAALT  158 (363)
Q Consensus       145 ~~~liViDSi~al~  158 (363)
                      ...++++|-+..+.
T Consensus        84 ~~~vl~iDEi~~l~   97 (151)
T cd00009          84 KPGVLFIDEIDSLS   97 (151)
T ss_pred             CCCEEEEECHHHCC
T ss_conf             99869820166559


No 74 
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.06  E-value=2.8e-05  Score=52.97  Aligned_cols=120  Identities=20%  Similarity=0.348  Sum_probs=74.9

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC----HHHEEEEECCCHHHHHHHHHHHHH
Q ss_conf             8079997068723789999998752008987999973885566889981988----334489725848999999999974
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd----~~~l~~~~~~~~E~~~~i~~~li~  142 (363)
                      |.|+.|.|...||||.+|.+++...   ++.+.||-|-..+|.++.+++-.-    ...+     .|.|+.+++.+.+.+
T Consensus         1 gmi~LVtGG~rSGKS~~AE~la~~~---~~~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w-----~TiE~p~~l~~~l~~   72 (170)
T PRK05800          1 GMLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPLDDEMAARIAHHRQRRPAHW-----QTVEEPLDLAELLRA   72 (170)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-----EEEECCCCHHHHHHH
T ss_conf             9899997987634899999999856---99829997588888789999999997378995-----799646678999987


Q ss_pred             -CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECC
Q ss_conf             -48976899814333220265543455530224788876776777764201-78189998634
Q gi|255764460|r  143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR-SKCILVFINQM  203 (363)
Q Consensus       143 -~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k-~~~~~i~iNQ~  203 (363)
                       ....++|++|+++.+.+..-.+.+  +..       +...+..+...+.+ ....+|++|.+
T Consensus        73 ~~~~~~~vLlDclt~wl~N~l~~~~--~~~-------~~~~~~~ll~~l~~~~~~~ViVsnEV  126 (170)
T PRK05800         73 DAAPGRCVLVDCLTTWVTNLLFEDG--EEA-------IAAEIEALLAALQRLPAKIILVSNEV  126 (170)
T ss_pred             HCCCCCEEEEHHHHHHHHHHHHHCC--HHH-------HHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             4577886872267899999875023--667-------99999999999982799789997786


No 75 
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=98.05  E-value=5.5e-05  Score=51.10  Aligned_cols=111  Identities=23%  Similarity=0.373  Sum_probs=73.4

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHH---C-CC
Q ss_conf             5501477278999723897268807999706872378999999875200898799997388556--6889981---9-88
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKL---G-VD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~---G-vd  118 (363)
                      -+.+.||+.++|.++.+|   +|.=..|+|..++|||++|+.++.+.-..+-.|+|.--=..-+  .++.+.+   | ++
T Consensus       143 ~epL~TGIkaID~liPIG---rGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~  219 (497)
T TIGR03324       143 TVPLQTGLKVIDALIPIG---RGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMD  219 (497)
T ss_pred             CCCCCCCHHHHHCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCC
T ss_conf             871002414554246556---77467764588888008899999704566718999973250787999999987487523


Q ss_pred             HHHEEEEECC--CHHH------HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             3344897258--4899------99999999744897689981433322
Q gi|255764460|r  119 LKNLLISQPD--TGEQ------ALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       119 ~~~l~~~~~~--~~E~------~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      -.-++.+..+  ...+      +..++|.+...|.--|+|+||++-..
T Consensus       220 ~TvVV~Ata~dpa~lr~~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A  267 (497)
T TIGR03324       220 YTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHA  267 (497)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHH
T ss_conf             417999568899899988789999999999968974899997806999


No 76 
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.04  E-value=2.3e-05  Score=53.46  Aligned_cols=116  Identities=27%  Similarity=0.345  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEECCCHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566889981-98833448972584899999999997
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQPDTGEQALEITDMLV  141 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~~~~~E~~~~i~~~li  141 (363)
                      |+++-+=+.+|||||||||.+|-.++.++   +...+.++.     ++...++ |            -.|..+.-+-.+.
T Consensus       162 Gi~pPkGvLLyGPPGtGKTllAkAvA~e~---~~~fi~v~~-----s~l~sk~vG------------esek~vr~lF~~A  221 (390)
T PRK03992        162 GIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVG-----SELVQKFIG------------EGARLVRELFELA  221 (390)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEH-----HHHHHCCCC------------HHHHHHHHHHHHH
T ss_conf             99999727868989997899999999874---888799667-----997524541------------7999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EE
Q ss_conf             4489768998143332202655434555302247888767767777642017818999-86
Q gi|255764460|r  142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF-IN  201 (363)
Q Consensus       142 ~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iN  201 (363)
                      ++.+.++|+||-+.++.++..-.+..++.   .-.|.++++|..|-..-...++.+|+ ||
T Consensus       222 r~~aP~IiFiDEiDai~~~R~~~~~~g~~---ev~r~l~qLL~emDG~~~~~~V~VIaATN  279 (390)
T PRK03992        222 REKAPSIIFIDEIDAIAAKRTDSGTSGDR---EVQRTLMQLLAEMDGFDPRGNVKIIAATN  279 (390)
T ss_pred             HHHCCCEEEHHHHHHHHCCCCCCCCCCCH---HHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf             97099089714325663356778886208---89999999999744877778827996069


No 77 
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=98.03  E-value=2.6e-05  Score=53.12  Aligned_cols=126  Identities=17%  Similarity=0.310  Sum_probs=86.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEEC---CCHHHHHHHHHHHHHCC
Q ss_conf             079997068723789999998752008987999973885566889981988334489725---84899999999997448
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP---DTGEQALEITDMLVRSG  144 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~---~~~E~~~~i~~~li~~~  144 (363)
                      .++.|.|...||||.+|=..+++   .++.+.||-|-..||+++.+++-.--++    +|   .+.|..+++...|-...
T Consensus         1 ~~ilvtGgaRSGKS~~AE~la~~---~~~~v~YvAT~~a~D~Em~~RI~~Hr~r----Rp~~W~tvE~~~~l~~~L~~~~   73 (175)
T COG2087           1 MMILVTGGARSGKSSFAEALAGE---SGGQVLYVATGRAFDDEMQERIAHHRAR----RPEHWRTVEAPLDLATLLEALI   73 (175)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH---HCCCEEEEEECCCCCHHHHHHHHHHHHC----CCCCCEEEECCCCHHHHHHHCC
T ss_conf             90898568667741899999985---1896499980677887899999999856----8876568864443899987444


Q ss_pred             C-CCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCC
Q ss_conf             9-76899814333220265543455530224788876776777764201781-899986341
Q gi|255764460|r  145 A-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC-ILVFINQMR  204 (363)
Q Consensus       145 ~-~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~-~~i~iNQ~r  204 (363)
                      + .++|.+|+++..++..-..++   ..-.. ++.+......|...+..... +++++|-+-
T Consensus        74 ~~~~~VLvDcLt~wvtNll~~~e---~~~~~-~~~~~~~~~~L~~al~~~~~~~ilVsNEvG  131 (175)
T COG2087          74 EPGDVVLVDCLTLWVTNLLFAGE---KDWSA-EAAIEAEIEALLAALSRAPGTVVLVSNEVG  131 (175)
T ss_pred             CCCCEEEEECHHHHHHHHHHCCC---CCCCH-HHHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             67987999758899999874564---32330-556999999999987407865899966864


No 78 
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  Pentoses include xylose, arabinose, and ribose.  Important hexoses include glucose, galactose, and fructose.  In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.03  E-value=0.00024  Score=47.09  Aligned_cols=118  Identities=23%  Similarity=0.416  Sum_probs=72.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECC--CCCCHHHHHHHCCCHHHEEEEECCCHHH-HHHHHH
Q ss_conf             72688079997068723789999998752008-9879999738--8556688998198833448972584899-999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAE--HALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITD  138 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E--~~~~~~~a~~~Gvd~~~l~~~~~~~~E~-~~~i~~  138 (363)
                      -+++|.++-+.||.++|||||+ .+++...+. .|.+ +++.+  ...+|..+.+.|+.    ++.|-.-+++ -+.++.
T Consensus        22 ~i~~Gei~~lvG~nGaGKSTl~-~~i~Gl~~p~~G~i-~i~G~~i~~~~~~~~~~~gi~----~v~qLSgG~~Qrv~iar   95 (163)
T cd03216          22 SVRRGEVHALLGENGAGKSTLM-KILSGLYKPDSGEI-LVDGKEVSFASPRDARRAGIA----MVYQLSVGERQMVEIAR   95 (163)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCEECCCCCHHHHHHCCCC----EECCCCHHHHHHHHHHH
T ss_conf             9879989999988998999999-99957768985789-999999999999999987994----89469989999999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             9974489768998143332202655434555302247888767767777642017818999863411
Q gi|255764460|r  139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       139 ~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      .|+..  .++++.|=-.+-     +|-       ..+..+ -+.++.    +.+.+++++++.|--+
T Consensus        96 al~~~--p~llilDEPt~g-----LD~-------~~~~~i-~~~l~~----l~~~G~til~vtH~l~  143 (163)
T cd03216          96 ALARN--ARLLILDEPTAA-----LTP-------AEVERL-FKVIRR----LRAQGVAVIFISHRLD  143 (163)
T ss_pred             HHHHC--CCEEEEECCCCC-----CCH-------HHHHHH-HHHHHH----HHHCCCEEEEEECCHH
T ss_conf             99729--999999097557-----999-------999999-999999----9878989999938499


No 79 
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503    The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC.    A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=98.00  E-value=0.00017  Score=47.98  Aligned_cols=148  Identities=26%  Similarity=0.318  Sum_probs=112.9

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH---
Q ss_conf             014772789997238972688079997068723789999998752008987999973885566--889981988334---
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN---  121 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~---  121 (363)
                      ++|+|...||..+| ||+-...|+...|..++|||.|.-.++.++++....++.+..|.+-..  ..+..+|+|.++   
T Consensus       244 rvssGv~~ld~mCG-GGff~dsiil~tGatGtGktllvs~f~~~~C~n~~railfayeesraql~rn~~sWG~dfe~~e~  322 (484)
T TIGR02655       244 RVSSGVKRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLEDACKNKERAILFAYEESRAQLLRNAYSWGIDFEELEQ  322 (484)
T ss_pred             EEHHHHHHHHHHCC-CCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf             21000466643217-85121035676257776605566678886414677358885113467775233201443788500


Q ss_pred             -----EEEEECC--CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             -----4897258--489999999999744897689981433322026554345553022478887677677776420178
Q gi|255764460|r  122 -----LLISQPD--TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK  194 (363)
Q Consensus       122 -----l~~~~~~--~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~  194 (363)
                           ++-..|+  -.|+-+.++..-+..-...-+-|||++||. +            |.......+|.--++..+.+..
T Consensus       323 ~~llki~C~yPes~Gledhlq~ik~~i~~fkP~r~~idslsala-r------------Gvs~nafrqfviGvtGyakqee  389 (484)
T TIGR02655       323 QGLLKIICAYPESAGLEDHLQIIKSEIAEFKPARIAIDSLSALA-R------------GVSNNAFRQFVIGVTGYAKQEE  389 (484)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-H------------HHHHHHHEEEEEEECCCCCHHH
T ss_conf             37237777077746617899999877742385300156577775-3------------2122100033564113112001


Q ss_pred             CEEEEEECCCCCCC
Q ss_conf             18999863411456
Q gi|255764460|r  195 CILVFINQMRMKIG  208 (363)
Q Consensus       195 ~~~i~iNQ~r~~ig  208 (363)
                      ++-+|+|-.-.=+|
T Consensus       390 i~G~ftnt~~~f~G  403 (484)
T TIGR02655       390 ITGFFTNTSDQFLG  403 (484)
T ss_pred             CEEEEECCHHHHCC
T ss_conf             00222023012302


No 80 
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=98.00  E-value=2.6e-05  Score=53.15  Aligned_cols=119  Identities=19%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC----HHHEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             9997068723789999998752008987999973885566889981988----334489725848999999999974489
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA  145 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd----~~~l~~~~~~~~E~~~~i~~~li~~~~  145 (363)
                      +.|.|...||||.+|.+++...   ++.+.||-|-..+|+++.+++-.-    +..+.     |.|+..++.+.+-....
T Consensus         1 iLVtGG~rSGKS~~AE~la~~~---~~~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w~-----tiE~~~~l~~~l~~~~~   72 (166)
T pfam02283         1 ILVTGGARSGKSRFAERLALAS---GGPVVYIATAQAFDDEMAERIARHRARRPAGWT-----TIEEPLDLAEALARLPG   72 (166)
T ss_pred             CEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCE-----EEECCCCHHHHHHHCCC
T ss_conf             9886887733899999999855---998199976988888999999999971899967-----99774459999984698


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCC
Q ss_conf             76899814333220265543455530224788876776777764201-781899986341
Q gi|255764460|r  146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR-SKCILVFINQMR  204 (363)
Q Consensus       146 ~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k-~~~~~i~iNQ~r  204 (363)
                      .+.|++|+++.+.+..-...+. +       ..+...+..+...+.+ ....++++|.+-
T Consensus        73 ~~~vLiDclt~wl~N~l~~~~~-~-------~~~~~~~~~ll~~l~~~~~~~ViVsnEvG  124 (166)
T pfam02283        73 GDVVLVDCLTLWLTNLLFAGDD-E-------EDIEAEVDELLAALKARPAPVVLVSNEVG  124 (166)
T ss_pred             CCEEEEECHHHHHHHHHHCCCC-H-------HHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             9869997177899998762374-7-------78999999999999748997999976767


No 81 
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1,  is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.00  E-value=4.1e-05  Score=51.90  Aligned_cols=111  Identities=21%  Similarity=0.364  Sum_probs=70.8

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCC--HHHHHHH-CCC-H
Q ss_conf             55014772789997238972688079997068723789999998752008-98799997388556--6889981-988-3
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALD--SIYARKL-GVD-L  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~--~~~a~~~-Gvd-~  119 (363)
                      -+.+.||+..+|.++.   +-+|.=.-|+|++++|||+|+.+++.+.++. +..|+|.---..-+  .++.+.+ +-+ +
T Consensus        50 ~e~l~TGIr~ID~l~p---igkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~~~~l  126 (274)
T cd01133          50 TEILETGIKVIDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVL  126 (274)
T ss_pred             CCCCCCCCEEEECCCC---CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf             8731158666644466---1478577875799998236899999999850898799998425548899999972035665


Q ss_pred             HH--EEEEECC--------CHHHHHHHHHHHHHC-CCCCEEEEECCCCCC
Q ss_conf             34--4897258--------489999999999744-897689981433322
Q gi|255764460|r  120 KN--LLISQPD--------TGEQALEITDMLVRS-GAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~--l~~~~~~--------~~E~~~~i~~~li~~-~~~~liViDSi~al~  158 (363)
                      ++  +++.+.+        ...-++.+++.+..+ |.--|+++||+....
T Consensus       127 ~~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd~~G~dVLll~DslTr~A  176 (274)
T cd01133         127 SKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFT  176 (274)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHH
T ss_conf             33799983455540578999999999999999728985999971868999


No 82 
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.99  E-value=9.1e-05  Score=49.73  Aligned_cols=131  Identities=16%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf             89997238972688079997068723789999998752008987999973885566889981988334489725848999
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA  133 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~  133 (363)
                      .+..+.+..=+..++-+.++|++|+|||.||..+..++.++|..|.|+.+..-++     .+-..     .. .++.++ 
T Consensus        34 ~i~~L~~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~-----~l~~~-----~~-~~~~~~-  101 (178)
T pfam01695        34 LIAELAGLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVE-----QLKRA-----RG-DGRLAR-  101 (178)
T ss_pred             HHHHHHCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHH-----HHHHH-----HH-CCCHHH-
T ss_conf             9998855974215876899899998789999999999998698599996167999-----99987-----52-674999-


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             99999997448976899814333220265543455530224788876776777764201781899986341145665466
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS  213 (363)
Q Consensus       134 ~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~  213 (363)
                        .+..+   ..++++|+|=++...+. +-.           +   ..++..+...-. .+.++|-+|.--.+-+-+|||
T Consensus       102 --~l~~~---~~~dlLIiDDlG~~~~s-~~~-----------~---~~lf~li~~Rye-~~stIiTSN~~~~~W~~~~~d  160 (178)
T pfam01695       102 --TLQRL---AKADLLILDDIGYLPLS-QEA-----------A---HLLFELISDRYE-RRSTILTSNLPFGEWHEVFGD  160 (178)
T ss_pred             --HHHHH---HCCCEEEEEHHCCCCCC-HHH-----------H---HHHHHHHHHHHC-CCCEEEECCCCHHHHHHHCCC
T ss_conf             --99996---25897887200165689-899-----------9---999999999975-688687768997899876487


Q ss_pred             CCCC
Q ss_conf             5125
Q gi|255764460|r  214 PETT  217 (363)
Q Consensus       214 p~~~  217 (363)
                      |..+
T Consensus       161 ~~~a  164 (178)
T pfam01695       161 PTLA  164 (178)
T ss_pred             HHHH
T ss_conf             6899


No 83 
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.98  E-value=6.4e-05  Score=50.68  Aligned_cols=123  Identities=16%  Similarity=0.242  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH----CC
Q ss_conf             465501477278999723897268807999706872378999999875200898799997388556-6889981----98
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL----GV  117 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~----Gv  117 (363)
                      ..-+.+.||+.++|.++.   +-+|.=+-|+|..++|||+|+.+++.+++..+-.|+..=.|..-. .++.+..    |+
T Consensus       143 ~i~epl~TGIraID~llp---ig~GQR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~lIGeRgrEv~efie~~~~~~~l  219 (442)
T PRK06315        143 KLRTILSTGVRCIDGMLT---VARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGM  219 (442)
T ss_pred             CCCCCCCCCCEEECCCCC---CCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf             878753368530011277---02377764038999988899999997440389349999551137999999975201452


Q ss_pred             CHHHEEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHH
Q ss_conf             833448972584--------89999999999744897689981433322-0265543455
Q gi|255764460|r  118 DLKNLLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMG  168 (363)
Q Consensus       118 d~~~l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~  168 (363)
                      +-.-+++.++|.        .--++.++|.+-..|.-.|+++||+.-.. ...|+--..+
T Consensus       220 ~rsvvV~atsd~p~~~R~~a~~~A~aiAEyFrd~G~~VLl~~DslTR~A~A~REi~l~~g  279 (442)
T PRK06315        220 KRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAG  279 (442)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf             133999617999878875558877789999986899489994370288889999997558


No 84 
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=97.95  E-value=5.6e-05  Score=51.06  Aligned_cols=105  Identities=22%  Similarity=0.352  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCC-HHHHHHH---CC-CHHHEE
Q ss_conf             772789997238972688079997068723789999998752008987999973-88556-6889981---98-833448
Q gi|255764460|r   50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA-EHALD-SIYARKL---GV-DLKNLL  123 (363)
Q Consensus        50 TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~-E~~~~-~~~a~~~---Gv-d~~~l~  123 (363)
                      ||+..+|.++.   +-+|.=.-|+|++++|||+|+.+++.+. +.+..|+|.=. |..-. .++.+.+   |+ +-.-++
T Consensus         1 TGi~~ID~l~p---ig~GQr~~I~g~~g~GKt~l~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv   76 (213)
T pfam00006         1 TGIRAIDLLLP---IGKGQRIGIFGGSGTGKTVLLGMIARNA-KADVVEVYVLIGERGREVAEFIEELLGEGALKRTVVV   76 (213)
T ss_pred             CCCCEEECCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             98400020166---4578887787899998899999999856-6189359981377779999999975213766506999


Q ss_pred             EEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             97258--------489999999999744897689981433322
Q gi|255764460|r  124 ISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       124 ~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +.+.+        ...-++.+++.+...|.--|+++||+..+.
T Consensus        77 ~~~~d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A  119 (213)
T pfam00006        77 AATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFA  119 (213)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
T ss_conf             8468898789999999999999999976996899837805999


No 85 
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.93  E-value=0.00023  Score=47.21  Aligned_cols=86  Identities=22%  Similarity=0.339  Sum_probs=56.9

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             079997068723789999998752008987999973885566-------8899819883344897258489999999999
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
                      +++.+.||+++||||.+..+++...++|..+++|.+. ++++       .|++.+|+..-..-. ..+-.+-+.+.++..
T Consensus         2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~D-t~R~gA~eQL~~ya~~l~v~~~~~~~-~~d~~~~~~~~l~~~   79 (196)
T pfam00448         2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAAD-TFRAAAIEQLKQLAERLGVPVFGSGT-GSDPAAVAFDAVEKA   79 (196)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHHH
T ss_conf             6999989999988999999999999779928999758-77688999999999863981781487-778789999999998


Q ss_pred             HHCCCCCEEEEECCCC
Q ss_conf             7448976899814333
Q gi|255764460|r  141 VRSGAVDIIVIDSVAA  156 (363)
Q Consensus       141 i~~~~~~liViDSi~a  156 (363)
                       +....|+|+||..+-
T Consensus        80 -~~~~~D~IlIDTaGr   94 (196)
T pfam00448        80 -KAENYDVVLVDTAGR   94 (196)
T ss_pred             -HHCCCCEEEEECCCC
T ss_conf             -846899999989998


No 86 
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.93  E-value=0.00014  Score=48.55  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=71.1

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-H---CC
Q ss_conf             465501477278999723897268807999706872378999999875200898799997388556-688998-1---98
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-L---GV  117 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~---Gv  117 (363)
                      ...+.+.||+.++|.++.   +-+|.=.-|+|..++|||+|+.+++.+ ++.+-.|+.+=.|.+-. .++.+. +   |+
T Consensus       135 ~i~e~l~TGIraID~l~p---igrGQR~gIfg~sGvGKstLl~~i~~~-~~adv~Vi~lIGeRgrEv~efi~~~l~~~gl  210 (432)
T PRK06793        135 EITDVFETGIKSIDSMLT---IGIGQKIGIFAGSGVGKSTLLGMIAKN-AKADINVISLVGERGREVKDFIRKELGEEGM  210 (432)
T ss_pred             CCCCCCCCCCCHHHHCCC---CCCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEEEEEECHHHHHHHHHHHHCCCC
T ss_conf             778740048731000156---124626666326898789999999872-4578657999888627999999998644675


Q ss_pred             CHHHEEEEECCC--HH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             833448972584--89------999999999744897689981433322
Q gi|255764460|r  118 DLKNLLISQPDT--GE------QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       118 d~~~l~~~~~~~--~E------~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +-.-+++++.|.  .+      -++.++|.+-..|.--|+++||++...
T Consensus       211 ~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~A  259 (432)
T PRK06793        211 RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFA  259 (432)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             2127887258899899998875512378899866996899945678888


No 87 
>PRK12377 putative replication protein; Provisional
Probab=97.90  E-value=8.4e-05  Score=49.93  Aligned_cols=117  Identities=15%  Similarity=0.215  Sum_probs=73.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             80799970687237899999987520089879999738855668899819883344897258489999999999744897
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV  146 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~  146 (363)
                      ++-.-++||||+|||.||..+..++.+.|..|.|+.+..=++.-....     ++     ..+.+.   .+..|.   .+
T Consensus       101 ~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~~L~~a~-----~~-----g~~~~k---~l~~l~---~~  164 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY-----DN-----GQSGEK---FLQELC---KV  164 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH-----HC-----CCCHHH---HHHHHH---CC
T ss_conf             860899899998788999999999998799699988999999999999-----84-----850999---999973---38


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             68998143332202655434555302247888767767777642017818999863411456654665
Q gi|255764460|r  147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP  214 (363)
Q Consensus       147 ~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p  214 (363)
                      ||+|+|=++.. |-.+-+           +   .-++..+.....+.+.++|.+|+-....+..||+.
T Consensus       165 dLLIIDElG~~-~~s~~~-----------~---~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilgda  217 (248)
T PRK12377        165 DLLVLDEIGIQ-RETKNE-----------Q---VVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGER  217 (248)
T ss_pred             CEEEEHHCCCC-CCCHHH-----------H---HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             98986000578-898679-----------9---99999999998557986897589977998887599


No 88 
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=97.88  E-value=6e-05  Score=50.87  Aligned_cols=143  Identities=21%  Similarity=0.324  Sum_probs=84.6

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHH---C-CC
Q ss_conf             5501477278999723897268807999706872378999999875200898799997388556--6889981---9-88
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKL---G-VD  118 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~---G-vd  118 (363)
                      -+.+.||+.++|.++.   +-+|.=.-|+|..++|||+|++.++.+....+..|+|.-.-..-+  .++.+.+   | ++
T Consensus       143 ~epL~TGIkaID~l~p---igrGQR~gIfg~~GvGKT~L~~~~I~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~  219 (502)
T PRK13343        143 TEPLQTGLKVIDALIP---IGRGQRELIIGDRQTGKTAIAIDAIINQKDKDVICVYVAIGQKASTVARVIDTLREHGALE  219 (502)
T ss_pred             CCCCCCCEEEEECCCC---CCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCH
T ss_conf             7543126067405566---4678577513678888048999999972578874999996045165989999987648513


Q ss_pred             HHHEEEEECC--CHHH------HHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHHHHH-----HHCCCHHHHHHHHHHH
Q ss_conf             3344897258--4899------999999997448976899814333220-265543455-----5302247888767767
Q gi|255764460|r  119 LKNLLISQPD--TGEQ------ALEITDMLVRSGAVDIIVIDSVAALTP-RAEIEGDMG-----ESLPGMQARLMSQALR  184 (363)
Q Consensus       119 ~~~l~~~~~~--~~E~------~~~i~~~li~~~~~~liViDSi~al~p-~~Eie~~~~-----d~~~g~~ar~ms~~lr  184 (363)
                      -.-+++.+.+  ..++      ++.++|.+...|.--|+++||+....- ..|+---++     +.+.+.-.-++++.+-
T Consensus       220 ~tvvV~ata~~p~~~r~~ap~~a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlE  299 (502)
T PRK13343        220 YTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLE  299 (502)
T ss_pred             HHEEEECCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             12245237789868875556652025799996699679999566899999989999748998766769458877268998


Q ss_pred             HHHHHH
Q ss_conf             777642
Q gi|255764460|r  185 KLTSSI  190 (363)
Q Consensus       185 kl~~~~  190 (363)
                      +.....
T Consensus       300 Ra~~~~  305 (502)
T PRK13343        300 RATKLS  305 (502)
T ss_pred             HHHHCC
T ss_conf             887526


No 89 
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=97.86  E-value=0.00022  Score=47.27  Aligned_cols=138  Identities=20%  Similarity=0.329  Sum_probs=86.1

Q ss_pred             CCCCCHHHHHHHCC-CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH----C--C-CEEEEEECCCCCCH-----HHHHH
Q ss_conf             14772789997238-97268807999706872378999999875200----8--9-87999973885566-----88998
Q gi|255764460|r   48 VSSGSLGLDIALGI-GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----T--G-GTCAFVDAEHALDS-----IYARK  114 (363)
Q Consensus        48 i~TG~~~lD~~Lg~-GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk----~--g-~~~~~iD~E~~~~~-----~~a~~  114 (363)
                      |.+=...|--+| . |.-|.+ |. |||++|||||..+-+++.+.|.    .  . -.++||+++..=+.     ..+++
T Consensus        26 I~~l~~~L~~~l-~PG~~P~N-i~-iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~  102 (383)
T TIGR02928        26 IEELAKALRPIL-RPGSRPSN-IF-IYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQ  102 (383)
T ss_pred             HHHHHHHHHHHH-CCCCCCCC-EE-EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             999999988750-67489872-58-8788898788999999999999862269971589997785468469999999998


Q ss_pred             H-----CCCHHHEEEEECCCHHHHHH-HHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Q ss_conf             1-----98833448972584899999-999997-448976899814333220265543455530224788876776777-
Q gi|255764460|r  115 L-----GVDLKNLLISQPDTGEQALE-ITDMLV-RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL-  186 (363)
Q Consensus       115 ~-----Gvd~~~l~~~~~~~~E~~~~-i~~~li-~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl-  186 (363)
                      +     |..+-..=+    +..+.++ +.+.|. ..+..-+||+|=|..|+ +..-+.      ++ -+|+|= .|.+. 
T Consensus       103 ln~~~~~~~vP~tG~----s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv-~~~~d~------PA-yS~~LY-~L~Ra~  169 (383)
T TIGR02928       103 LNRRGSGEEVPTTGL----STSEVFRELYKELNRERGDSLIIVLDEIDKLV-RKDDDD------PA-YSKLLY-QLSRAR  169 (383)
T ss_pred             HCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-CCCCCC------HH-HHHHHH-HHHHHH
T ss_conf             515778888988778----78999999999983201887999862310221-588888------07-878853-433100


Q ss_pred             -HHHHCCCCCEEEEEE
Q ss_conf             -764201781899986
Q gi|255764460|r  187 -TSSISRSKCILVFIN  201 (363)
Q Consensus       187 -~~~~~k~~~~~i~iN  201 (363)
                       +..+...++.+|+|.
T Consensus       170 ~~~~~~~~~vgvIgIS  185 (383)
T TIGR02928       170 ENGDLENAKVGVIGIS  185 (383)
T ss_pred             HCCCCCCCCEEEEEEE
T ss_conf             0357788534899986


No 90 
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters.  The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake.  The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA.  The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme.  A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.85  E-value=0.0002  Score=47.53  Aligned_cols=124  Identities=22%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCH-HHHHHHCC--------CHHHEEEEECC---
Q ss_conf             72688079997068723789999998752008987999973885--566-88998198--------83344897258---
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDS-IYARKLGV--------DLKNLLISQPD---  128 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~-~~a~~~Gv--------d~~~l~~~~~~---  128 (363)
                      -++.|.++-+.||.+||||||+-.++.-.....|.+.| +.+.-  +++ ++++.+|.        +++.+.-..+.   
T Consensus        21 ~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~-~g~~i~~~~~~~~~~~i~~v~Q~l~~~~l~~~~~~~~~~LS   99 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL-DGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS   99 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE-CCEECCCCCHHHHHCCCCHHHHHHHHCCCHHHHCCCHHHCC
T ss_conf             88699799999899988999999995798998728999-99998969999995546499999998599778649910379


Q ss_pred             CHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             489-99999999974489768998143332202655434555302247888767767777642017818999863411
Q gi|255764460|r  129 TGE-QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       129 ~~E-~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      -++ |-+.++..|+..  .+++++|=-.+                |+.+......+..+.....+.++++|++.|-.+
T Consensus       100 GGqkQrv~iA~aL~~~--P~ililDEPts----------------~LD~~~~~~i~~~i~~l~~~~~~tii~itHdl~  159 (180)
T cd03214         100 GGERQRVLLARALAQE--PPILLLDEPTS----------------HLDIAHQIELLELLRRLARERGKTVVMVLHDLN  159 (180)
T ss_pred             HHHHHHHHHHHHHHHC--CCEEEECCCCC----------------CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             9999999999999868--96478858754----------------479999999999999999846989999907989


No 91 
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.85  E-value=0.0002  Score=47.59  Aligned_cols=122  Identities=18%  Similarity=0.297  Sum_probs=75.7

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCC--HHHHHHH---C-
Q ss_conf             6550147727899972389726880799970687237899999987520-0898799997388556--6889981---9-
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALD--SIYARKL---G-  116 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~--~~~a~~~---G-  116 (363)
                      ..+.+.||+.++|.++.   +.+|.=+-|+|..++|||+|+..++.+++ ..++.++|.-.=...+  .++.+.+   | 
T Consensus       121 ~~e~l~TGIkaID~l~p---igrGqrigIfggaGvGKTvL~~~ii~n~~~~~~~v~V~~~iGER~rEv~e~~~el~~~g~  197 (459)
T PRK12597        121 STELLETGIKVIDLLCP---IAKGGKTGLFGGAGVGKTVLMMELIFNISKRHQGSSVFAGVGERSREGHELYLEMKESGV  197 (459)
T ss_pred             CCCCCCCCHHHHHCCCC---CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             78720038055541266---357877774368999821578999998775517836888624546889999999863687


Q ss_pred             CCHHHEEEEECCC--------HHHHHHHHHHHHH-CCCCCEEEEECCCCCC-CHHHHHHHHH
Q ss_conf             8833448972584--------8999999999974-4897689981433322-0265543455
Q gi|255764460|r  117 VDLKNLLISQPDT--------GEQALEITDMLVR-SGAVDIIVIDSVAALT-PRAEIEGDMG  168 (363)
Q Consensus       117 vd~~~l~~~~~~~--------~E~~~~i~~~li~-~~~~~liViDSi~al~-p~~Eie~~~~  168 (363)
                      ++-.-+++.+.|.        .--++.++|.+-. .|.--|+++||+...+ -..|+-.-++
T Consensus       198 l~~tvvV~~~~depp~~R~~~~~~a~tiAEyFrD~~g~dVLl~~D~ltR~A~A~rEisl~lg  259 (459)
T PRK12597        198 LDKTVMVYGQMNEPPGARMRVVLTGLTAAEYFRDEEKEDVLLFIDNIFRFVQAGSEVSGLLG  259 (459)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             52489998068899999987777888999999863799789995576899999999998637


No 92 
>PRK08181 transposase; Validated
Probab=97.84  E-value=9e-05  Score=49.76  Aligned_cols=122  Identities=21%  Similarity=0.307  Sum_probs=76.3

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEEC-CCHHHHHHHHHHH
Q ss_conf             972688079997068723789999998752008987999973885566889981988334489725-8489999999999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP-DTGEQALEITDML  140 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~-~~~E~~~~i~~~l  140 (363)
                      .=+..+.-+-+.||+|+|||.||..+..+++++|..|.|+.+..=+     +.+..       ++. .+.+.   .+..+
T Consensus       101 ~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~-----~~L~~-------a~~~~~~~~---~~~~l  165 (269)
T PRK08181        101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV-----QKLQV-------ARRELQLES---AIAKL  165 (269)
T ss_pred             HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH-----HHHHH-------HHHCCCHHH---HHHHH
T ss_conf             5886487089989999878899999999999879939997899999-----99999-------775583999---99997


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             74489768998143332202655434555302247888767767777642017818999863411456654665125
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT  217 (363)
Q Consensus       141 i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~  217 (363)
                         ...+|+|||=++-+. -..-           .+.+   ++..+... ...+.++|-.|.--.+=+-.||||..+
T Consensus       166 ---~~~dLLIiDe~G~~~-~~~~-----------~~~~---lf~lI~~R-ye~~S~IITSn~~~~~W~~~f~D~~la  223 (269)
T PRK08181        166 ---DKFDLLILDDLAYVT-KDQA-----------ETSV---LFELISAR-YERRSILITANQPFGEWNRVFPDPAMT  223 (269)
T ss_pred             ---HCCCEEEEHHCCCCC-CCHH-----------HHHH---HHHHHHHH-HCCCCEEEECCCCHHHHHHHCCCHHHH
T ss_conf             ---444601220105667-9989-----------9999---99999998-578888998899977887753868899


No 93 
>PRK06526 transposase; Provisional
Probab=97.82  E-value=0.00014  Score=48.61  Aligned_cols=131  Identities=18%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHH
Q ss_conf             99972389726880799970687237899999987520089879999738855668899819883344897258489999
Q gi|255764460|r   55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL  134 (363)
Q Consensus        55 lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~  134 (363)
                      +..+....=+..+.-+-+.||+|+|||.||-.+..+++++|..|.|+.+..=     ++.+..--.      ..+.++  
T Consensus        86 i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L-----~~~L~~a~~------~g~~~~--  152 (254)
T PRK06526         86 IAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW-----VARLAAAHH------AGRLQD--  152 (254)
T ss_pred             HHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH-----HHHHHHHHH------CCCHHH--
T ss_conf             9998637177658878998999986899999999999986996799877999-----999999885------580999--


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             99999974489768998143332202655434555302247888767767777642017818999863411456654665
Q gi|255764460|r  135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP  214 (363)
Q Consensus       135 ~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p  214 (363)
                       .+..+   ..++|+|+|=++-.. -..           ..+.+   ++..+...- ..+.++|-.|..-+.=+-+||||
T Consensus       153 -~~~~l---~~~dLLIiDe~g~~~-~~~-----------~~a~~---lf~li~~Ry-e~~S~IiTSn~~~~~W~~~f~D~  212 (254)
T PRK06526        153 -ELVKL---GRIPLLIVDEVGYIP-FEA-----------EAANL---FFQLVSSRY-ERASLIVTSNKPFGRWGEVFGDD  212 (254)
T ss_pred             -HHHHH---HCCCEEEEECCCCCC-CCH-----------HHHHH---HHHHHHHHH-CCCCEEEECCCCHHHHHHHCCCH
T ss_conf             -99985---136877650213644-788-----------99999---999999997-45886766589866888864868


Q ss_pred             CCCC
Q ss_conf             1256
Q gi|255764460|r  215 ETTT  218 (363)
Q Consensus       215 ~~~~  218 (363)
                      ..+.
T Consensus       213 ~la~  216 (254)
T PRK06526        213 VVAA  216 (254)
T ss_pred             HHHH
T ss_conf             9999


No 94 
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.81  E-value=0.00039  Score=45.71  Aligned_cols=111  Identities=17%  Similarity=0.237  Sum_probs=68.2

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-C---CC
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-6889981-9---88
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-G---VD  118 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-G---vd  118 (363)
                      .-+.+.||+.++|.++.   +.+|.=+-|+|.+++|||+|..+++.++. .+-.|+-.=.|..-. .++.+.. |   ++
T Consensus       120 i~e~l~TGIraID~l~p---ig~GQRigIfgg~GvGKt~Ll~~i~~~~~-adv~V~aliGeRgrEv~efi~~~~~~~~l~  195 (418)
T TIGR03498       120 VGEPLDTGVRVIDTFLP---LCRGQRLGIFAGSGVGKSTLLSMLARNTD-ADVVVIALVGERGREVREFLEDDLGEEGLK  195 (418)
T ss_pred             CCCCCCCCCCHHHHCCC---CCCCCEEECCCCCCCCHHHHHHHHHHHCC-CCEEEEEEEEEEHHHHHHHHHHHHHCCCCC
T ss_conf             88743157602120155---02576641137899988899999987507-986899883026899999999865315644


Q ss_pred             HHHEEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             3344897258--------489999999999744897689981433322
Q gi|255764460|r  119 LKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       119 ~~~l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      -.-+++.+.|        +.--++.++|.+-..|.--|+++||+....
T Consensus       196 ~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~Dsltr~A  243 (418)
T TIGR03498       196 RSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFA  243 (418)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             269999448898788888887877899999867983899955725889


No 95 
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.80  E-value=0.00011  Score=49.32  Aligned_cols=121  Identities=15%  Similarity=0.222  Sum_probs=75.3

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH----CCC
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-6889981----988
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL----GVD  118 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~----Gvd  118 (363)
                      .-+.++||+.++|.++.   +-+|.=+-|+|..++|||+|..+++.+++ .+-.|+.+=.|..=. .++.+.+    |++
T Consensus       155 i~epL~TGIraID~llp---igrGQRigIfagsGvGKs~Ll~~iar~~~-adv~Vi~lIGERgrEv~efi~~~l~~~~~~  230 (455)
T PRK07960        155 IEHVLDTGVRAINALLT---VGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGAEGRA  230 (455)
T ss_pred             CCCCCCCCCEEEECCCC---CCCCCEEECCCCCCCCHHHHHHHHHHHHC-CCEEEEEEECEEHHHHHHHHHHHHCCCCCC
T ss_conf             78723268444403367---14787763248998849999999988608-985899720406289999999975147742


Q ss_pred             HHHEEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHH
Q ss_conf             3344897258--------489999999999744897689981433322-0265543455
Q gi|255764460|r  119 LKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMG  168 (363)
Q Consensus       119 ~~~l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~  168 (363)
                      -.-+++++.|        ..--++.++|.+-.+|.--|+++||+.... ...|+--.++
T Consensus       231 rsvvv~atsd~~p~~r~~aa~~a~aiAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~g  289 (455)
T PRK07960        231 RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIG  289 (455)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             12799842666848888789999999999985587379997364788888888887637


No 96 
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.79  E-value=0.00012  Score=49.06  Aligned_cols=110  Identities=21%  Similarity=0.299  Sum_probs=66.3

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCC-HHHHHHH-CCC-H
Q ss_conf             6550147727899972389726880799970687237899999987520089879999-7388556-6889981-988-3
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALD-SIYARKL-GVD-L  119 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~-~~~a~~~-Gvd-~  119 (363)
                      .-+.+.||+.++|.++.   +.+|.=.-|+|++++|||+|+-+++ +..+.+ .++|. =.|..=. .++.+.+ +-+ +
T Consensus        49 v~e~l~TGI~~ID~l~p---igrGQR~~Ifg~~g~GKt~Ll~~i~-~~~~~~-v~V~~~IGer~rev~e~~~~~~~~~~l  123 (326)
T cd01136          49 IDEVLPTGVRAIDGLLT---VGKGQRLGIFAGSGVGKSTLLGMIA-RGTTAD-VNVIALIGERGREVREFIEKDLGEEGL  123 (326)
T ss_pred             CCCCCCCCCCHHCCCCC---CCCCCEEEEECCCCCCCCHHHHHHH-HCCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf             88751157704200266---2479878743699998466787686-414677-599996053388999999986245653


Q ss_pred             HH--EEEEECC-C-------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             34--4897258-4-------89999999999744897689981433322
Q gi|255764460|r  120 KN--LLISQPD-T-------GEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~--l~~~~~~-~-------~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      ++  +++.+.| .       ..-++.+++.+...|.--|+++||+....
T Consensus       124 ~~tvvv~atad~~~~~r~~a~~~a~~~AEyfrd~G~dVL~~~Dsltr~A  172 (326)
T cd01136         124 KRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFA  172 (326)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             2228996068899899999888777778899975873378752468999


No 97 
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78  E-value=0.00064  Score=44.36  Aligned_cols=100  Identities=23%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             HHHHHHCCCCCC---CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHH--E-EEEEC
Q ss_conf             899972389726---88079997068723789999998752008987999973885566889981988334--4-89725
Q gi|255764460|r   54 GLDIALGIGGFP---KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--L-LISQP  127 (363)
Q Consensus        54 ~lD~~Lg~GG~p---~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~--l-~~~~~  127 (363)
                      .|=.+|| +..+   +-.++.+.|.-+|||||.|-.++.-.++.|..|+.+-+ .+++|.-.++|-+-.++  + +|..+
T Consensus        82 eL~~llg-~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaa-Dt~RpaA~eQL~~la~~~~v~~~~~~  159 (433)
T PRK00771         82 ELVKLLG-EEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICA-DTWRPGAYEQLKQLCEKINVPFYGDP  159 (433)
T ss_pred             HHHHHHC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9999849-676566898589997378897899999999999977994678506-78836899999999986388731788


Q ss_pred             ---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             ---8489999999999744897689981433322
Q gi|255764460|r  128 ---DTGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       128 ---~~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                         +-++-+.+.++.   ....|+||||..+-|.
T Consensus       160 ~~~dp~~i~~~a~~~---~k~~DvviiDTAGRl~  190 (433)
T PRK00771        160 KEKDAVKIVKEGLEK---LKKVDVIIVDTAGRHK  190 (433)
T ss_pred             CCCCHHHHHHHHHHH---HCCCCEEEEECCCCCC
T ss_conf             999999999999998---4569889997765210


No 98 
>PRK10867 signal recognition particle protein; Provisional
Probab=97.77  E-value=0.00053  Score=44.89  Aligned_cols=91  Identities=13%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHH--EEEEECC----CHHHHHHHHHHHH
Q ss_conf             079997068723789999998752008987999973885566889981988334--4897258----4899999999997
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--LLISQPD----TGEQALEITDMLV  141 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~--l~~~~~~----~~E~~~~i~~~li  141 (363)
                      .++.+.|.-+|||||.|-.++.-.++.++..+.+-+-.+|+|.-.++|-.--++  +-++..+    -++-+.+.++ ..
T Consensus       101 ~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~ia~~a~~-~a  179 (453)
T PRK10867        101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK-EA  179 (453)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHH-HH
T ss_conf             69999746888518589999999997389837985588770589999999998519804367889988999999999-99


Q ss_pred             HCCCCCEEEEECCCCCCC
Q ss_conf             448976899814333220
Q gi|255764460|r  142 RSGAVDIIVIDSVAALTP  159 (363)
Q Consensus       142 ~~~~~~liViDSi~al~p  159 (363)
                      +...+|+||||..+-+..
T Consensus       180 k~~~~DvvivDTAGRl~~  197 (453)
T PRK10867        180 KLKFYDVLLVDTAGRLHV  197 (453)
T ss_pred             HHCCCCEEEEECCCCHHC
T ss_conf             977999999978760121


No 99 
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=97.77  E-value=0.00054  Score=44.84  Aligned_cols=140  Identities=18%  Similarity=0.317  Sum_probs=81.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCH--HHHH---HHCC-
Q ss_conf             550147727899972389726880799970687237899999987520-08987999973885566--8899---8198-
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDS--IYAR---KLGV-  117 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~--~~a~---~~Gv-  117 (363)
                      .+.+.||+.++|.++.   +.+|.=+-|+|..+.|||+|+..++.+.+ ..++.++|.-.=...+.  ++.+   ..|+ 
T Consensus       136 ~e~leTGIkaID~l~p---igkGQRigIfggaGvGKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl  212 (480)
T CHL00060        136 LSIFETGIKVVDLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVI  212 (480)
T ss_pred             CCCHHCCHHHHHCCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             8611027044431254---0036688765689988789999999612003798899999667736799999999871855


Q ss_pred             CH-----HHE--EEEECCC--------HHHHHHHHHHHHHCCCCC-EEEEECCCCCC-CHHHHHHHHHH-----HCCCHH
Q ss_conf             83-----344--8972584--------899999999997448976-89981433322-02655434555-----302247
Q gi|255764460|r  118 DL-----KNL--LISQPDT--------GEQALEITDMLVRSGAVD-IIVIDSVAALT-PRAEIEGDMGE-----SLPGMQ  175 (363)
Q Consensus       118 d~-----~~l--~~~~~~~--------~E~~~~i~~~li~~~~~~-liViDSi~al~-p~~Eie~~~~d-----~~~g~~  175 (363)
                      +.     ++.  ++.+.|.        +--++.++|.+-..+..+ |+++||+.-.+ ...|+-.-+++     .+.+..
T Consensus       213 ~~~~~~~s~~vlV~~~~depp~~R~~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppsl  292 (480)
T CHL00060        213 NEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTL  292 (480)
T ss_pred             CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             33554430489997356787688999999988899999874897089995462899988878998627999866789648


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             888767767777
Q gi|255764460|r  176 ARLMSQALRKLT  187 (363)
Q Consensus       176 ar~ms~~lrkl~  187 (363)
                      .-.|++.+-+++
T Consensus       293 f~~l~~L~ER~~  304 (480)
T CHL00060        293 STEMGSLQERIT  304 (480)
T ss_pred             HHHHHHHHHHHC
T ss_conf             888778888632


No 100
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.76  E-value=0.00049  Score=45.09  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=25.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             726880799970687237899999987520
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      -++.|.++-|.|++||||||++..++.-..
T Consensus        29 ~i~~GEilgivGeSGsGKSTl~~~ilgll~   58 (327)
T PRK11022         29 SVKQGEVVGIVGESGSGKSVSSLAIMGLID   58 (327)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             988999999999998789999999974889


No 101
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.76  E-value=0.00067  Score=44.24  Aligned_cols=42  Identities=24%  Similarity=0.451  Sum_probs=28.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -+..|.++-|.|++|||||||+..++.-.....|.+ ++|.+.
T Consensus        37 ~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~p~~G~I-~~~G~d   78 (327)
T PRK11308         37 NLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL-YYQGQD   78 (327)
T ss_pred             EECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE-EECCEE
T ss_conf             988999999999983199999999956999886379-989995


No 102
>PRK07594 type III secretion system ATPase; Validated
Probab=97.75  E-value=0.00015  Score=48.26  Aligned_cols=110  Identities=17%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCC-HHHHHHH-CC-CH
Q ss_conf             6550147727899972389726880799970687237899999987520089879999-7388556-6889981-98-83
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALD-SIYARKL-GV-DL  119 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~-~~~a~~~-Gv-d~  119 (363)
                      ..+.+.||+.++|.++.+   -+|.=.-|+|.+++|||+|+ ..+++....+- ++|. =.|..=. .++.+.+ +- .+
T Consensus       135 i~epl~TGIkaID~l~pi---grGQR~gIfgg~GvGKTtLl-~~i~~~~~adv-~V~~lIGERgrEv~efie~~~~~~~~  209 (433)
T PRK07594        135 ITQPLMTGIRAIDSVATC---GEGQRVGIFSAPGVGKSTLL-AMLCNAPDADS-NVLVLIGERGREVREFIDFTLSEETR  209 (433)
T ss_pred             CCCCCCCCCEEHHCCCCC---CCCCEEEECCCCCCCHHHHH-HHHHHCCCCCC-EEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf             786143674000135771---24787420478999855899-99984247981-59999410048899999986533662


Q ss_pred             HH--EEEEECCC--HH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             34--48972584--89------999999999744897689981433322
Q gi|255764460|r  120 KN--LLISQPDT--GE------QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~--l~~~~~~~--~E------~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      ++  ++++..|.  .+      -++.+++.+...|.-.|+++||++-..
T Consensus       210 ~rsvvV~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~DslTR~A  258 (433)
T PRK07594        210 KRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258 (433)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             0389999558899999999987766789999866964899734388899


No 103
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.75  E-value=0.00024  Score=47.03  Aligned_cols=111  Identities=16%  Similarity=0.220  Sum_probs=70.6

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-H---CCC
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-688998-1---988
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-L---GVD  118 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~---Gvd  118 (363)
                      .-+.+.||+.++|.++.   +-+|.=+-|+|.++.|||+|+.+++.++. .+-.|+..=.|..=. .++.+. +   |++
T Consensus       138 i~e~L~TGIraID~l~p---igrGQRigIfagsGvGKs~Ll~~i~r~~~-adv~VialIGeRgrEv~efi~~~l~~~~l~  213 (441)
T PRK08927        138 VGPPLDLGVRALNTFLT---CCRGQRLGIFAGSGVGKSVLLSMLARNTD-ADVSVIGLIGERGREVQEFLQDDLGPEGLA  213 (441)
T ss_pred             CCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf             77631036015653300---20364666316899987899999986416-773787522651899999999872024522


Q ss_pred             HHHEEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             3344897258--------489999999999744897689981433322
Q gi|255764460|r  119 LKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       119 ~~~l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      -.-+++.+.|        ..--++.+++.+-..|.--|+++||+...+
T Consensus       214 rsvvV~atsd~p~~~R~~a~~~A~aiAEyfrd~G~~VLl~~Dsltr~A  261 (441)
T PRK08927        214 RSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFA  261 (441)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             458999637898788799998755899999977996799834602888


No 104
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.75  E-value=0.00081  Score=43.72  Aligned_cols=142  Identities=18%  Similarity=0.327  Sum_probs=82.1

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCC--HHHHHHH---CC
Q ss_conf             6550147727899972389726880799970687237899999987520-0898799997388556--6889981---98
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALD--SIYARKL---GV  117 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~--~~~a~~~---Gv  117 (363)
                      ..+.+.||+.++|.++.   +.+|.=.-|+|..++|||+|+..++.+.. +..+.++|.-.=..-+  .++.+.+   |+
T Consensus       118 ~~e~l~TGIkaID~l~p---igrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~~IGER~rE~~e~~~el~~~g~  194 (449)
T TIGR03305       118 KSEVFETGIKAIDVLVP---LERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGV  194 (449)
T ss_pred             CCCCEECCCEEHHHCCC---CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCCC
T ss_conf             78640028440230245---245756566527999841018999986564148868999974521679999999875366


Q ss_pred             -CHHHEEEEECCC--------HHHHHHHHHHHH-HCCCCCEEEEECCCCCCC-HHHHHHHHHH-----HCCCHHHHHHHH
Q ss_conf             -833448972584--------899999999997-448976899814333220-2655434555-----302247888767
Q gi|255764460|r  118 -DLKNLLISQPDT--------GEQALEITDMLV-RSGAVDIIVIDSVAALTP-RAEIEGDMGE-----SLPGMQARLMSQ  181 (363)
Q Consensus       118 -d~~~l~~~~~~~--------~E~~~~i~~~li-~~~~~~liViDSi~al~p-~~Eie~~~~d-----~~~g~~ar~ms~  181 (363)
                       +-.-+++.+.+.        .--++.++|.+- ..+.--|+++||+...+- ..|+-.-+++     .+.+...-.+++
T Consensus       195 l~~tv~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~dVLl~~D~ltr~a~A~rEvsl~lg~~P~~~GYpp~vf~~l~~  274 (449)
T TIGR03305       195 LDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAE  274 (449)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             54269998369898799999999877699998861798089999676899999989998638999877879719999899


Q ss_pred             HHHHHHH
Q ss_conf             7677776
Q gi|255764460|r  182 ALRKLTS  188 (363)
Q Consensus       182 ~lrkl~~  188 (363)
                      .+-+...
T Consensus       275 L~ER~~~  281 (449)
T TIGR03305       275 LEERIAT  281 (449)
T ss_pred             HHHHHCC
T ss_conf             9985248


No 105
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR).  DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.75  E-value=0.00032  Score=46.23  Aligned_cols=90  Identities=18%  Similarity=0.275  Sum_probs=50.7

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHH---
Q ss_conf             972688079997068723789999998752008--987999973885566889981988334489725848999999---
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI---  136 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~--g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i---  136 (363)
                      .-++.|.++-|-||.+||||||. .+++.....  ..--++++....-..++.+.+|.-+..-...+.-|++|.+..   
T Consensus        30 ~~v~~Gei~~ilGpnGaGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~a~  108 (194)
T cd03213          30 GKAKPGELTAIMGPSGAGKSTLL-NALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK  108 (194)
T ss_pred             EEEECCEEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEEEECCEECCHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             89908819999989995199999-99857777899628999999999757843128998466523776849999999987


Q ss_pred             --------------HHHHHHCCCCCEEEEECC
Q ss_conf             --------------999974489768998143
Q gi|255764460|r  137 --------------TDMLVRSGAVDIIVIDSV  154 (363)
Q Consensus       137 --------------~~~li~~~~~~liViDSi  154 (363)
                                    +..|+.  ..+++++|--
T Consensus       109 l~~LSgGqrqRv~iA~aL~~--~P~illlDEP  138 (194)
T cd03213         109 LRGLSGGERKRVSIALELVS--NPSLLFLDEP  138 (194)
T ss_pred             HCCCCHHHHHHHHHHHHHHC--CCCEEEEECC
T ss_conf             26988899999999999963--9988999489


No 106
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.74  E-value=0.0004  Score=45.67  Aligned_cols=142  Identities=20%  Similarity=0.289  Sum_probs=76.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC---C-------EEEEEECCCCCCHHHHHHHCCCHHHEEEEEC---C
Q ss_conf             9726880799970687237899999987520089---8-------7999973885566889981988334489725---8
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---G-------TCAFVDAEHALDSIYARKLGVDLKNLLISQP---D  128 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g---~-------~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~---~  128 (363)
                      =-+|.|.++-|.||.+||||||+.......++..   .       ..+|+|.     ......+|+..  +-.-++   -
T Consensus        16 l~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~l~~--~~l~~~~~~L   88 (176)
T cd03238          16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-----LQFLIDVGLGY--LTLGQKLSTL   88 (176)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHH-----HHHHHHCCCCC--CCCCCCCCCC
T ss_conf             7888998999999999989999998887610311203210137553688577-----99999748866--7789916868


Q ss_pred             C-HH-HHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             4-89-999999999744897689981433-32202655434555302247888767767777642017818999863411
Q gi|255764460|r  129 T-GE-QALEITDMLVRSGAVDIIVIDSVA-ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       129 ~-~E-~~~~i~~~li~~~~~~liViDSi~-al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      + +| |-+.++..|+..-...++++|=-. +|=|.             ...+++ +.++.+    .+.+.++|++.|-  
T Consensus        89 SGGqkQRvaiAraL~~~p~~~ililDEPtsgLD~~-------------~~~~l~-~~l~~l----~~~g~TvI~vtHd--  148 (176)
T cd03238          89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ-------------DINQLL-EVIKGL----IDLGNTVILIEHN--  148 (176)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH-------------HHHHHH-HHHHHH----HHCCCEEEEEECC--
T ss_conf             99999999999999868998689971774458987-------------999999-999999----9879989999478--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE
Q ss_conf             45665466512565531111112489750455344577247
Q gi|255764460|r  206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT  246 (363)
Q Consensus       206 ~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~i  246 (363)
                              ++      .+.+ |.-.+.+.+ +.++++.+++
T Consensus       149 --------~~------~~~~-aDrii~l~~-G~i~~~Gkiv  173 (176)
T cd03238         149 --------LD------VLSS-ADWIIDFGP-GSGKSGGKVV  173 (176)
T ss_pred             --------HH------HHHH-CCEEEEECC-CCCCCCEEEE
T ss_conf             --------79------9983-999999459-9766793999


No 107
>PRK08149 ATP synthase SpaL; Validated
Probab=97.74  E-value=0.00016  Score=48.12  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-CCC-HH
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-6889981-988-33
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-GVD-LK  120 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-Gvd-~~  120 (363)
                      .-+.+.||+.++|.++.   +.+|.=+-|+|.+++|||+|.-+++.++ ..+-.|+..=.|..=. .++.+.+ +-. ++
T Consensus       130 i~e~l~TGIraID~l~p---igkGQR~gIf~gsGvGKs~Ll~~i~~~~-~adv~Via~IGeRgrEv~efi~~~~~~~~l~  205 (427)
T PRK08149        130 IREPLITGVRAIDGLLT---CGVGQRMGIFASAGCGKTMLMNMLIEHT-EADVFVIGLIGERGREVTEFVEMLRASHKKE  205 (427)
T ss_pred             CCCCEECCCEEECCCCC---CCCCCEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf             88500038643104453---2467540002789986779999888635-8998999970233789999999750368520


Q ss_pred             H--EEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             4--4897258--------489999999999744897689981433322
Q gi|255764460|r  121 N--LLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       121 ~--l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +  +++.+.|        +..-++.++|.+-..|.-.|+++||+....
T Consensus       206 rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A  253 (427)
T PRK08149        206 KCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYA  253 (427)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             368997158899899999998877899999867983799617578888


No 108
>PRK04195 replication factor C large subunit; Provisional
Probab=97.74  E-value=0.00079  Score=43.78  Aligned_cols=38  Identities=32%  Similarity=0.458  Sum_probs=26.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             72688079997068723789999998752008987999973
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA  103 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~  103 (363)
                      |-|..+...++||||+||||+|.-++.+.   |.-++-+++
T Consensus        36 g~~~~k~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNA   73 (403)
T PRK04195         36 GKPPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNA   73 (403)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECC
T ss_conf             99657469988939987999999999984---998599771


No 109
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.74  E-value=0.00024  Score=47.05  Aligned_cols=111  Identities=17%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CHHHHHHH-CCCHHH
Q ss_conf             6550147727899972389726880799970687237899999987520089879999738855-66889981-988334
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-DSIYARKL-GVDLKN  121 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~-~~~~a~~~-Gvd~~~  121 (363)
                      .-+.+.||+.++|.++..   -+|.=.-|+|..++|||+|. ..+++.+..+..|+.+=.|..- -.++.+.. +-.+++
T Consensus       145 i~epL~TGIkaID~l~pi---grGQR~gIfgg~GvGKTtLl-~~i~~~~~~d~vV~~lIGeRgrEv~ef~e~~l~~~l~~  220 (450)
T PRK06002        145 VDTPLRTGVRVIDIFTPL---CAGQRIGIFAGSGVGKSTLL-AMLARADAFDTVVVALVGERGREVREFLEDTLADHLSK  220 (450)
T ss_pred             CCCCCCCCHHHHHHHCCC---CCCCEEEECCCCCCCHHHHH-HHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCE
T ss_conf             887663103133421460---14877774268999875999-99986258987999986474899999999876422000


Q ss_pred             --EEEEECC--CHH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             --4897258--489------999999999744897689981433322
Q gi|255764460|r  122 --LLISQPD--TGE------QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       122 --l~~~~~~--~~E------~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                        ++++..+  ..+      -++.++|.+-..|.-.|+++||++...
T Consensus       221 svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~A  267 (450)
T PRK06002        221 AVAVVATGDESPMMRRLAPKTATAIAEYFRDRGENVLLIVDSVTRFA  267 (450)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             59997058898288765565544379999967996799982617888


No 110
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.73  E-value=0.00029  Score=46.56  Aligned_cols=82  Identities=26%  Similarity=0.416  Sum_probs=54.7

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHH-CC-CEEEEEECCCCCC-------HHHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf             68807999706872378999999875200-89-8799997388556-------688998198833448972584899999
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQK-TG-GTCAFVDAEHALD-------SIYARKLGVDLKNLLISQPDTGEQALE  135 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g-~~~~~iD~E~~~~-------~~~a~~~Gvd~~~l~~~~~~~~E~~~~  135 (363)
                      +.++++-+.||+|+||||.+..+++.+.- .| ..+++|.+. ++.       ..|++-+||.+..     ..+.++.-+
T Consensus       192 ~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~D-tyRigA~eQLk~ya~il~vp~~v-----v~~~~~l~~  265 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTD-TYRIGAVEQLKTYAKILGVPVKV-----ARDPKELAK  265 (282)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHCCEEEE-----ECCHHHHHH
T ss_conf             567279997788875788999999999997389967999807-77678999999999995974899-----399999999


Q ss_pred             HHHHHHHCCCCCEEEEECCC
Q ss_conf             99999744897689981433
Q gi|255764460|r  136 ITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       136 i~~~li~~~~~~liViDSi~  155 (363)
                      .++.+   ...|+|+||..+
T Consensus       266 ~l~~~---~~~d~IlIDTaG  282 (282)
T TIGR03499       266 ALERL---RDKDLILIDTAG  282 (282)
T ss_pred             HHHHC---CCCCEEEEECCC
T ss_conf             99865---798999981979


No 111
>PRK09183 transposase/IS protein; Provisional
Probab=97.73  E-value=0.00016  Score=48.19  Aligned_cols=126  Identities=17%  Similarity=0.199  Sum_probs=73.8

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             89726880799970687237899999987520089879999738855668899819883344897258489999999999
Q gi|255764460|r   61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
                      ..=+..++-+-+.||+|+|||.||..+..++.++|..|.|+.+..=+     +.+-..-.      ..+..   ..+...
T Consensus        95 ~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~-----~~L~~a~~------~~~~~---~~l~r~  160 (258)
T PRK09183         95 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL-----LQLSTAQR------QGRYK---TTLQRG  160 (258)
T ss_pred             CCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH-----HHHHHHHH------CCCHH---HHHHHH
T ss_conf             81665588679989999868999999999999879939997899999-----99999987------68599---999987


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCCCCC
Q ss_conf             74489768998143332202655434555302247888767767777642017818999863411456654-6651256
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF-GSPETTT  218 (363)
Q Consensus       141 i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~-g~p~~~~  218 (363)
                        -...+|+|||=++-+. -..-           .+   .-++..+...- ..+.++|-.|.--.+=+..| |||..+.
T Consensus       161 --l~~~dLLIiDdlG~~~-~~~~-----------~~---~~lfeli~~Ry-e~~S~IiTSn~~~~~W~~~f~~D~~la~  221 (258)
T PRK09183        161 --VMAPRLLIIDEIGYLP-FSQE-----------EA---NLFFQVIAKRY-EKGAMILTSNLPFGQWDQTFAGDAALTS  221 (258)
T ss_pred             --HCCCCEEEEHHHHCCC-CCHH-----------HH---HHHHHHHHHHH-CCCCEEEECCCCHHHHHHHCCCCHHHHH
T ss_conf             --4346514431331546-8888-----------99---99999999985-7677899889997898565168699999


No 112
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.72  E-value=0.0011  Score=42.90  Aligned_cols=122  Identities=23%  Similarity=0.339  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-------C----------------EEEEEECCCCCCHHH--------
Q ss_conf             726880799970687237899999987520089-------8----------------799997388556688--------
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------G----------------TCAFVDAEHALDSIY--------  111 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-------~----------------~~~~iD~E~~~~~~~--------  111 (363)
                      -+..|...-|.|+++||||||+ .+++..++..       |                -.+|=|.+.+++|-+        
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~-r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E  107 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLA-RLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE  107 (252)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEECCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             9648978999848989888999-999565678886289888405766530333045069951872246841019899742


Q ss_pred             -----------------HHHHCCCHHHEEEEEC-CCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             -----------------9981988334489725-8489--9999999997448976899814333220265543455530
Q gi|255764460|r  112 -----------------ARKLGVDLKNLLISQP-DTGE--QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL  171 (363)
Q Consensus       112 -----------------a~~~Gvd~~~l~~~~~-~~~E--~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~  171 (363)
                                       ++..|++.+-+.-.+. -++-  |-+.|+..|+-  ...++|.|=..+.     +     |. 
T Consensus       108 pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~--~PklLIlDEptSa-----L-----D~-  174 (252)
T COG1124         108 PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP--EPKLLILDEPTSA-----L-----DV-  174 (252)
T ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHHHHCC--CCCEEEECCCHHH-----H-----CH-
T ss_conf             430377537899999999984999899853942128168999999998636--8887995382344-----1-----58-


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             22478887677677776420178189998634
Q gi|255764460|r  172 PGMQARLMSQALRKLTSSISRSKCILVFINQM  203 (363)
Q Consensus       172 ~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~  203 (363)
                       -.||.+    +..+......++.++|||.|-
T Consensus       175 -siQa~I----lnlL~~l~~~~~lt~l~IsHd  201 (252)
T COG1124         175 -SVQAQI----LNLLLELKKERGLTYLFISHD  201 (252)
T ss_pred             -HHHHHH----HHHHHHHHHHCCCEEEEEECC
T ss_conf             -899999----999999998619459999672


No 113
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.72  E-value=0.0037  Score=39.55  Aligned_cols=141  Identities=18%  Similarity=0.274  Sum_probs=80.6

Q ss_pred             CCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC--------------HHH---------
Q ss_conf             880799970-68723789999998752008987999973885566889981988--------------334---------
Q gi|255764460|r   66 KGRIVEIYG-PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------------LKN---------  121 (363)
Q Consensus        66 ~Gri~ei~G-~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd--------------~~~---------  121 (363)
                      .++++.|.. .|+-||||+|+++++.....|..|+.||+.-. .|...+.+|+.              ++.         
T Consensus       530 ~~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlR-rp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~  608 (726)
T PRK09841        530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR-RGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG  608 (726)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC-CCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCCC
T ss_conf             886899977999997799999999999847995999828877-7107761599999877998389998899330279899


Q ss_pred             EEEE-----ECCCHHH----HH-HHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHCC-----C-HHHHHHHHHHH
Q ss_conf             4897-----2584899----99-999999744897689981433322-02655434555302-----2-47888767767
Q gi|255764460|r  122 LLIS-----QPDTGEQ----AL-EITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMGESLP-----G-MQARLMSQALR  184 (363)
Q Consensus       122 l~~~-----~~~~~E~----~~-~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~d~~~-----g-~~ar~ms~~lr  184 (363)
                      +.+.     +|+-.|-    .| ++++.| + ..+|+|||||-.-+. +-+-+-+.+.|..+     | ...+.+..+++
T Consensus       609 ldvl~aG~~p~nP~elL~s~~~~~ll~~l-~-~~yD~IIiDtPPvl~v~Da~~l~~~~D~~l~Vvr~g~T~~~~~~~a~~  686 (726)
T PRK09841        609 FDVITRGQVPPNPSELLMRDRMRQLLEWA-N-DHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQ  686 (726)
T ss_pred             EEEEECCCCCCCHHHHHCCHHHHHHHHHH-H-HCCCEEEEECCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHH
T ss_conf             89982899997989995876999999999-8-139999991999653415999999789599999799688999999999


Q ss_pred             HHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf             777642017818999863411456654
Q gi|255764460|r  185 KLTSSISRSKCILVFINQMRMKIGVMF  211 (363)
Q Consensus       185 kl~~~~~k~~~~~i~iNQ~r~~ig~m~  211 (363)
                      .+...  ..++.-+++|++....+..|
T Consensus       687 ~l~~~--~~~v~G~vlN~v~~~~~~~~  711 (726)
T PRK09841        687 RLEQA--GVNIKGAILNGVIKRASTAY  711 (726)
T ss_pred             HHHHC--CCCEEEEEECCCCCCCCCCC
T ss_conf             99978--99758999828865666676


No 114
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.71  E-value=0.00042  Score=45.54  Aligned_cols=141  Identities=21%  Similarity=0.342  Sum_probs=80.6

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCCCC--HHHHHH---HCC
Q ss_conf             65501477278999723897268807999706872378999999875200-898799997388556--688998---198
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALD--SIYARK---LGV  117 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~~~~--~~~a~~---~Gv  117 (363)
                      ..+.+.||+..+|.++.   +.+|.=+-|+|..+.|||+|+..++.+.++ .++.++|.-.=..-+  .++.+.   -|+
T Consensus       125 ~~e~l~TGIkaID~l~p---igkGqrigIfggaGvGKTvLl~eli~n~a~~~~~v~V~a~IGER~rE~~e~~~e~~~~g~  201 (466)
T PRK09280        125 KTEILETGIKVIDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV  201 (466)
T ss_pred             CCCCCCCCCHHHHCCCC---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             78630018132223167---137747985579999800899999999998659909999714236889999997664287


Q ss_pred             -CHHHEEEEECCC--------HHHHHHHHHHHHH-CCCCCEEEEECCCCCC-CHHHHHHHHHH-----HCCCHHHHHHHH
Q ss_conf             -833448972584--------8999999999974-4897689981433322-02655434555-----302247888767
Q gi|255764460|r  118 -DLKNLLISQPDT--------GEQALEITDMLVR-SGAVDIIVIDSVAALT-PRAEIEGDMGE-----SLPGMQARLMSQ  181 (363)
Q Consensus       118 -d~~~l~~~~~~~--------~E~~~~i~~~li~-~~~~~liViDSi~al~-p~~Eie~~~~d-----~~~g~~ar~ms~  181 (363)
                       +-.-+++.+.|-        +--++.++|.+-. .|.--|+++||+.-.+ -..|+-.-+++     .+.+...-.|++
T Consensus       202 l~~tvlV~~~~depp~~R~~~~~~a~tiAEyFRD~~g~dVLl~~D~ltRfa~A~rEvslllge~Ps~~GYppsl~~~l~~  281 (466)
T PRK09280        202 LDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGA  281 (466)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             63489999658899689999999999999998861798289997266899999999998627999877889428989899


Q ss_pred             HHHHHH
Q ss_conf             767777
Q gi|255764460|r  182 ALRKLT  187 (363)
Q Consensus       182 ~lrkl~  187 (363)
                      .+-+++
T Consensus       282 L~ER~~  287 (466)
T PRK09280        282 LQERIT  287 (466)
T ss_pred             HHHHHC
T ss_conf             998524


No 115
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.70  E-value=0.0002  Score=47.58  Aligned_cols=112  Identities=21%  Similarity=0.269  Sum_probs=70.9

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-HC---C
Q ss_conf             465501477278999723897268807999706872378999999875200898799997388556-688998-19---8
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-LG---V  117 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~G---v  117 (363)
                      ...+.+.||+.++|.++.   +.+|.=.-|+|.+++|||+|+.+++.++. .+-.|+..=.|..-. .++.+. +|   +
T Consensus       135 ~i~e~l~TGIraID~l~t---igkGQRigIf~gsGvGKs~Ll~~iar~~~-adv~V~~liGeR~rEv~efie~~l~~~~l  210 (435)
T PRK07721        135 PIREKMEVGVRAIDSLLT---VGKGQRVGIFAGSGVGKSTLMGMIARQTS-ADLNVIALIGERGREVREFIERDLGEEGL  210 (435)
T ss_pred             CCCCCCCCCCEEECCCCC---CCCCCEEEECCCCCCCHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf             988630378565226476---03575410026899878999999988744-88258999332028999999975221555


Q ss_pred             CHHHEEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             833448972584--------89999999999744897689981433322
Q gi|255764460|r  118 DLKNLLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       118 d~~~l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +-.-+++.+.|.        ..-++.++|.+-..|.--|+++||+....
T Consensus       211 ~rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A  259 (435)
T PRK07721        211 KRSIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQNVMLMMDSVTRVA  259 (435)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
T ss_conf             3239999438899999999999988899999967997899516388999


No 116
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.69  E-value=0.00015  Score=48.33  Aligned_cols=135  Identities=16%  Similarity=0.215  Sum_probs=78.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf             07999706872378999999875200898799997388556688998198833448972584899999999997448976
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD  147 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~  147 (363)
                      .++ ++|++|+|||.||..++.+..+.|..|+|+-+.     +++.++-    .. +-..+..|+  +++..|.   .+|
T Consensus        98 gLl-F~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~-----dLl~~lr----~t-~~~~~~~e~--~~l~~l~---~~d  161 (242)
T PRK07952         98 SFI-FSGKPGTGKNHLAAAICNELLLRGKSVLIITVA-----DIMSAMK----DT-FRNSETSEE--QLLNDLS---NVD  161 (242)
T ss_pred             EEE-EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH-----HHHHHHH----HH-HHCCCCCHH--HHHHHHH---CCC
T ss_conf             179-978999978999999999999879949997799-----9999999----99-806875699--9999863---189


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             899814333220265543455530224788876776777764201781899986341145665466512----5655311
Q gi|255764460|r  148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET----TTGGNAL  223 (363)
Q Consensus       148 liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~----~~GG~al  223 (363)
                      |+|+|-+++-. ..+-+.              ...+..+..-....+.++|.+|.--+.+...+|.-..    .-||..+
T Consensus       162 LLIiDdlG~e~-~t~~~~--------------~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~lGeR~~dRl~~~~~~~l  226 (242)
T PRK07952        162 LLVIDEIGVQT-ESRYEK--------------VIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWV  226 (242)
T ss_pred             EEEEECCCCCC-CCHHHH--------------HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             89873014665-888899--------------999999999997169889981799999999970899999972798599


Q ss_pred             CC-CCCEEEEE
Q ss_conf             11-11248975
Q gi|255764460|r  224 KF-YSSVRLDI  233 (363)
Q Consensus       224 ~~-~aS~rl~i  233 (363)
                      .| +.|.|=++
T Consensus       227 ~f~w~SyR~~i  237 (242)
T PRK07952        227 IFNWDSYRSRV  237 (242)
T ss_pred             EECCCCCCCCC
T ss_conf             60670501234


No 117
>PRK10416 cell division protein FtsY; Provisional
Probab=97.69  E-value=0.0031  Score=40.01  Aligned_cols=91  Identities=18%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHH--E-EEEEC---CCHHHHHHHHHHHH
Q ss_conf             079997068723789999998752008987999973885566889981988334--4-89725---84899999999997
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--L-LISQP---DTGEQALEITDMLV  141 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~--l-~~~~~---~~~E~~~~i~~~li  141 (363)
                      .++.+.|..|+||||.+-.++...+++|..|+..-+ .+|++.-.++|-+--++  + +|.+.   |...-+++.++.. 
T Consensus       296 ~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~-DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dpa~V~~dai~~a-  373 (499)
T PRK10416        296 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG-DTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA-  373 (499)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH-
T ss_conf             799997478787898999999999977995378840-667568999999984245736983689999799999999999-


Q ss_pred             HCCCCCEEEEECCCCCCCH
Q ss_conf             4489768998143332202
Q gi|255764460|r  142 RSGAVDIIVIDSVAALTPR  160 (363)
Q Consensus       142 ~~~~~~liViDSi~al~p~  160 (363)
                      +...+|++|||..+-|..+
T Consensus       374 ~~~~~DvviiDTAGRl~~~  392 (499)
T PRK10416        374 KARNVDVLIADTAGRLQNK  392 (499)
T ss_pred             HHCCCCEEEEECCCCCCCC
T ss_conf             9729998998577643260


No 118
>PRK05922 type III secretion system ATPase; Validated
Probab=97.68  E-value=0.00017  Score=48.03  Aligned_cols=111  Identities=18%  Similarity=0.292  Sum_probs=68.8

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE-EECCCCCC-HHHHHHH--CCC
Q ss_conf             4655014772789997238972688079997068723789999998752008987999-97388556-6889981--988
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF-VDAEHALD-SIYARKL--GVD  118 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~-iD~E~~~~-~~~a~~~--Gvd  118 (363)
                      ..-+.+.||+.++|.++.   +.+|.=.-|+|.+++|||+|+.+++.+ ++.+ .++| .=.|.+-. .++.+.+  +..
T Consensus       136 ~i~e~L~TGIraID~l~p---igrGQR~gIf~g~GvGKt~Ll~~ia~~-~~~~-v~V~alIGeR~rEv~efie~~~~~~~  210 (434)
T PRK05922        136 PIQEIFPTGIKAIDAFLT---LGKGQRIGVFSEPGSGKSSLLSTIAKG-SKST-INVIALIGERGREVREYIEQHKEGLK  210 (434)
T ss_pred             CCCCCCCCCCEEEECCCC---CCCCCEEEECCCCCCCHHHHHHHHHHC-CCCC-EEEEEEEEEEHHHHHHHHHHHHHCCC
T ss_conf             888755478556735677---246767773079999789999867653-6787-59998455138999999998661345


Q ss_pred             HHHEE--EEECC--CHH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             33448--97258--489------999999999744897689981433322
Q gi|255764460|r  119 LKNLL--ISQPD--TGE------QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       119 ~~~l~--~~~~~--~~E------~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      .++.+  +.+.+  ..+      -++.++|.+-..|.--|+++||+....
T Consensus       211 ~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A  260 (434)
T PRK05922        211 AQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWI  260 (434)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             21037875037788788899998876799999977996799954788999


No 119
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance.  Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis.  The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC.  Bacitracin has potent antibiotic activity against gram-positive bacteria.  The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin.  The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC.  B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.68  E-value=0.00054  Score=44.83  Aligned_cols=72  Identities=24%  Similarity=0.270  Sum_probs=43.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCC-CHHHHHHHCCCHHHEEEEECCCHHHHHHH
Q ss_conf             726880799970687237899999987520089-879999738855-66889981988334489725848999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHAL-DSIYARKLGVDLKNLLISQPDTGEQALEI  136 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E~~~-~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i  136 (363)
                      -++.|.|+-+.||.++|||||. .+++...+.. |.+ +|+.+... .+...+++|.-++.-.+.+--|+.|-+..
T Consensus        22 ~v~~Gei~gllG~NGaGKSTLl-~~i~Gl~~p~~G~i-~i~G~~~~~~~~~~~~ig~~~~~~~l~~~ltv~e~l~~   95 (208)
T cd03268          22 HVKKGEIYGFLGPNGAGKTTTM-KIILGLIKPDSGEI-TFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRL   95 (208)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCEECCCCHHHHHHEEEEECCCCCCCCCCHHHHHHH
T ss_conf             8869819999999999999999-99957837898999-99999999796857108999477767898899999999


No 120
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=97.68  E-value=0.00088  Score=43.48  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             268807999706872378999999875
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      +..|.++-|.|++|||||||+..++.-
T Consensus        35 i~~GE~l~ivGeSGsGKSTL~r~i~gl   61 (266)
T PRK10419         35 LKSGETVALLGRSGCGKSTLARLLVGL   61 (266)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             889989999999997799999999669


No 121
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67  E-value=0.00037  Score=45.83  Aligned_cols=119  Identities=25%  Similarity=0.423  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH-----HHHHHCCCH------------HHEEEE
Q ss_conf             726880799970687237899999987520089879999738855668-----899819883------------344897
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI-----YARKLGVDL------------KNLLIS  125 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~-----~a~~~Gvd~------------~~l~~~  125 (363)
                      =++.|.++-|.||++|||||| |.+++..-+...--+++|.+.-.+.+     .-+++|+=.            +++.+ 
T Consensus        22 ~i~~Ge~~~ivGpSG~GKSTl-lr~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~tv~eNv~~-   99 (178)
T cd03229          22 NIEAGEIVALLGPSGSGKSTL-LRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL-   99 (178)
T ss_pred             EECCCCEEEEECCCCCHHHHH-HHHHHCCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHCE-
T ss_conf             988998999999999839999-999985999996399999999988861024541775999269988998928996008-


Q ss_pred             ECCC-HH-HHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             2584-89-9999999997448976899814-3332202655434555302247888767767777642017818999863
Q gi|255764460|r  126 QPDT-GE-QALEITDMLVRSGAVDIIVIDS-VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ  202 (363)
Q Consensus       126 ~~~~-~E-~~~~i~~~li~~~~~~liViDS-i~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ  202 (363)
                       |-+ ++ |-..|+..|+..  .++++.|= .+||=|.             ....+    +..+.....+.++++|++.|
T Consensus       100 -~LSGGq~QRvaIARAL~~~--P~ill~DEPts~LD~~-------------~~~~i----~~~l~~l~~~~~~t~i~vTH  159 (178)
T cd03229         100 -GLSGGQQQRVALARALAMD--PDVLLLDEPTSALDPI-------------TRREV----RALLKSLQAQLGITVVLVTH  159 (178)
T ss_pred             -ECCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCHH-------------HHHHH----HHHHHHHHHHHCCEEEEECC
T ss_conf             -1772688999999998529--9999970897647999-------------99999----99999999964999999989


Q ss_pred             C
Q ss_conf             4
Q gi|255764460|r  203 M  203 (363)
Q Consensus       203 ~  203 (363)
                      -
T Consensus       160 d  160 (178)
T cd03229         160 D  160 (178)
T ss_pred             C
T ss_conf             9


No 122
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.67  E-value=0.0011  Score=43.00  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=37.3

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CC-HHHHHHHCC
Q ss_conf             972688079997068723789999998752008987999973885--56-688998198
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LD-SIYARKLGV  117 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~-~~~a~~~Gv  117 (363)
                      =-++.|.++-|.|+.|||||||+-.+..-.....|.+.| |.+.-  .+ .++.+++|+
T Consensus        31 l~i~~Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G~I~v-~G~~i~~~~~~~~~~~ig~   88 (273)
T PRK13632         31 FTINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI-FGITISKENLKYLRKKIGI   88 (273)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE-CCEECCCCCHHHHHHHEEE
T ss_conf             898499899999999986999999997387788875999-9999996898998743569


No 123
>KOG0730 consensus
Probab=97.66  E-value=0.00016  Score=48.09  Aligned_cols=111  Identities=26%  Similarity=0.312  Sum_probs=59.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHH-HHHHHH
Q ss_conf             9726880799970687237899999987520089879999738855668899819883344897258489999-999999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL-EITDML  140 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~-~i~~~l  140 (363)
                      .|++..|=+++|||+++|||.++=.++   ++.+..+.+|..     |+....+.-.           .|..+ .+.+ .
T Consensus       213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa---~e~~a~~~~i~~-----peli~k~~gE-----------te~~LR~~f~-~  272 (693)
T KOG0730         213 IGIKPPRGLLLYGPPGTGKTFLVRAVA---NEYGAFLFLING-----PELISKFPGE-----------TESNLRKAFA-E  272 (693)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHH---HHHCCEEEECCC-----HHHHHHCCCC-----------HHHHHHHHHH-H
T ss_conf             189999874443899998189999999---973722574062-----8999852463-----------1778999999-9


Q ss_pred             HHCCC-CCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             74489-768998143332202655434555302247888767767777642017818999
Q gi|255764460|r  141 VRSGA-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF  199 (363)
Q Consensus       141 i~~~~-~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~  199 (363)
                      ..... .-+|.||-+.+++|+.+-..+       ...|+-++.+..+-.+....+.+++.
T Consensus       273 a~k~~~psii~IdEld~l~p~r~~~~~-------~e~Rv~sqlltL~dg~~~~~~vivl~  325 (693)
T KOG0730         273 ALKFQVPSIIFIDELDALCPKREGADD-------VESRVVSQLLTLLDGLKPDAKVIVLA  325 (693)
T ss_pred             HHCCCCCEEEEHHHHHHHCCCCCCCCH-------HHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             866599807758767623776433324-------88899999999985276767469997


No 124
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.66  E-value=0.0007  Score=44.13  Aligned_cols=89  Identities=15%  Similarity=0.065  Sum_probs=54.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHH---HHCCCHHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             7999706872378999999875200898799997388556-68899---8198833448972584899999999997448
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYAR---KLGVDLKNLLISQPDTGEQALEITDMLVRSG  144 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~---~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~  144 (363)
                      |+-...--|+||||+|++++......|..|+.||+.-.-+ ..|.+   +-|.-.....+...+.....-...+.+- ..
T Consensus         4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~~   82 (231)
T pfam07015         4 ITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAE-GS   82 (231)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHH-HC
T ss_conf             99961799865999999999999968995999968998688999998764688887652220566015899999886-57


Q ss_pred             CCCEEEEECCCCCC
Q ss_conf             97689981433322
Q gi|255764460|r  145 AVDIIVIDSVAALT  158 (363)
Q Consensus       145 ~~~liViDSi~al~  158 (363)
                      .+|+||||.-+...
T Consensus        83 ~yD~VIIDtpg~~s   96 (231)
T pfam07015        83 GFDYALADTHGGSS   96 (231)
T ss_pred             CCCEEEECCCCCCC
T ss_conf             99989983998575


No 125
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.66  E-value=0.00029  Score=46.53  Aligned_cols=122  Identities=22%  Similarity=0.300  Sum_probs=74.5

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-HCCC-H
Q ss_conf             465501477278999723897268807999706872378999999875200898799997388556-688998-1988-3
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-LGVD-L  119 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~Gvd-~  119 (363)
                      ..-+.+.||+.++|.++.   +-+|.=+-|+|..++|||+|+.+++.++. .+-.|+..=.|..-. .++.+. ++-. +
T Consensus       116 ~i~e~l~TGIraID~l~p---igrGQRigIfag~GvGKt~Ll~~ia~~~~-adv~Vi~liGERgrEv~ef~~~~l~~~~l  191 (413)
T TIGR03497       116 RIRDPLETGIKAIDGLLT---IGKGQRVGIFAGSGVGKSTLLGMIARNAK-ADINVIALIGERGREVRDFIEKDLGEEGL  191 (413)
T ss_pred             CCCCEEECCCEEECCCCC---CCCCCEEEECCCCCCCHHHHHHHHHHHHC-CCCCEEEEEEEECHHHHHHHHHHHCCCCC
T ss_conf             788342038654216576---11375442105899877699999998743-78523888633228999999986312564


Q ss_pred             HH--EEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHH
Q ss_conf             34--4897258--------489999999999744897689981433322-0265543455
Q gi|255764460|r  120 KN--LLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMG  168 (363)
Q Consensus       120 ~~--l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~  168 (363)
                      ++  +++.+.|        ..--++.++|.+-..|.--|+++||+.... ...|+-..++
T Consensus       192 ~rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~g  251 (413)
T TIGR03497       192 KRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVG  251 (413)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf             215999845878879998877463278999986799689997371298899999998658


No 126
>KOG0736 consensus
Probab=97.66  E-value=0.0011  Score=42.76  Aligned_cols=150  Identities=28%  Similarity=0.441  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHH---------------HHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             999999999867618873797036655334655014772789---------------99723897268807999706872
Q gi|255764460|r   14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL---------------DIALGIGGFPKGRIVEIYGPESS   78 (363)
Q Consensus        14 ~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~l---------------D~~Lg~GG~p~Gri~ei~G~~~s   78 (363)
                      .-++++++++.+.|.. +   +| ..++ .+|.|=.-|-+..               -.++| -|+.+.+=+.+|||||+
T Consensus       644 edf~kals~~~~~fs~-a---iG-APKI-PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGT  716 (953)
T KOG0736         644 EDFDKALSRLQKEFSD-A---IG-APKI-PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGT  716 (953)
T ss_pred             HHHHHHHHHHHHHHHH-H---CC-CCCC-CCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHH-CCCCCCCEEEEECCCCC
T ss_conf             8888898898886555-3---07-9888-964600155789999999987547543756651-25431350588779998


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             37899999987520089879999738855668899819883344897258489999999999744897689981433322
Q gi|255764460|r   79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus        79 GKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      |||.+| .++|.-..    --|+..-+   ||..        |+.+=|.+  |.+-++.+. .|+.+.++|++|-+.+|.
T Consensus       717 GKTLlA-KAVATEcs----L~FlSVKG---PELL--------NMYVGqSE--~NVR~VFer-AR~A~PCVIFFDELDSlA  777 (953)
T KOG0736         717 GKTLLA-KAVATECS----LNFLSVKG---PELL--------NMYVGQSE--ENVREVFER-ARSAAPCVIFFDELDSLA  777 (953)
T ss_pred             CHHHHH-HHHHHHCE----EEEEEECC---HHHH--------HHHHCCHH--HHHHHHHHH-HHCCCCEEEEECCCCCCC
T ss_conf             557999-99875430----36785058---8998--------87743018--889999998-544697499831212327


Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             02655434555302247888767767777642017
Q gi|255764460|r  159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS  193 (363)
Q Consensus       159 p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~  193 (363)
                      |..-..||.|    |..-|..||.|--|-.+-..+
T Consensus       778 P~RG~sGDSG----GVMDRVVSQLLAELDgls~~~  808 (953)
T KOG0736         778 PNRGRSGDSG----GVMDRVVSQLLAELDGLSDSS  808 (953)
T ss_pred             CCCCCCCCCC----CCHHHHHHHHHHHHHCCCCCC
T ss_conf             5678878865----408999999999862666788


No 127
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity.  In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins.  Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family.  The ATP-binding domain shows the highest similarity between all members of the ABC transporter family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64  E-value=0.00058  Score=44.64  Aligned_cols=123  Identities=20%  Similarity=0.293  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCC-C-HHHHHHHCCCHHHEEEEECCCHHH-------
Q ss_conf             726880799970687237899999987520089-879999738855-6-688998198833448972584899-------
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHAL-D-SIYARKLGVDLKNLLISQPDTGEQ-------  132 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E~~~-~-~~~a~~~Gvd~~~l~~~~~~~~E~-------  132 (363)
                      -++.|.++-+.||.++|||||. .+++...+.. |.+ +++.+.-. + +...+.+|.=+....+.+--|+.+       
T Consensus        22 ~i~~Gei~gl~G~NGaGKSTLl-~~i~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG   99 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTLI-KIILGLLKPDSGEI-KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG   99 (173)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHH
T ss_conf             8879939999878997999999-99976857787889-999999886848886578999568766712677898633989


Q ss_pred             ---HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             ---99999999744897689981433322026554345553022478887677677776420178189998634114
Q gi|255764460|r  133 ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK  206 (363)
Q Consensus       133 ---~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~  206 (363)
                         -+.++..|+.  ..+++++|=-.+     -+|-       ..+ +.+-+.++.+    .+.++++|++.|--+.
T Consensus       100 ~kqrv~ia~al~~--~p~lllLDEPt~-----gLD~-------~~~-~~i~~~i~~l----~~~g~tvi~~tH~l~~  157 (173)
T cd03230         100 MKQRLALAQALLH--DPELLILDEPTS-----GLDP-------ESR-REFWELLREL----KKEGKTILLSSHILEE  157 (173)
T ss_pred             HHHHHHHHHHHHC--CCCEEEECCCCC-----CCCH-------HHH-HHHHHHHHHH----HHCCCEEEEECCCHHH
T ss_conf             9999999999964--999999908865-----7999-------999-9999999999----9689999999283899


No 128
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH.    FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=97.64  E-value=3.9e-05  Score=52.05  Aligned_cols=72  Identities=25%  Similarity=0.406  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC------------------------
Q ss_conf             55334655014772789997238972688079997068723789999998752008------------------------
Q gi|255764460|r   39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------------------------   94 (363)
Q Consensus        39 ~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~------------------------   94 (363)
                      ....+.|+++--.+. +- .|| |=||+| +. ++||||||||.||=-++.+|.-.                        
T Consensus        69 eEl~EiVdFLK~P~k-f~-~LG-aKIPKG-VL-LvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMFVGVGASRVRDL  143 (505)
T TIGR01241        69 EELVEIVDFLKNPSK-FT-KLG-AKIPKG-VL-LVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL  143 (505)
T ss_pred             HHHHHHHHHCCCCHH-HH-HCC-CCCCCC-EE-EECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECCCCCCCEEHHHH
T ss_conf             433313422269637-98-727-889871-47-31787842467887520258896247407610111205640001445


Q ss_pred             -------CCEEEEEECCCCCCHHHHHH-H
Q ss_conf             -------98799997388556688998-1
Q gi|255764460|r   95 -------GGTCAFVDAEHALDSIYARK-L  115 (363)
Q Consensus        95 -------g~~~~~iD~E~~~~~~~a~~-~  115 (363)
                             =..-+|||==.++-..+..- +
T Consensus       144 FeqAK~nAPCIIFIDEIDAVGr~RGaG~l  172 (505)
T TIGR01241       144 FEQAKKNAPCIIFIDEIDAVGRQRGAGEL  172 (505)
T ss_pred             HHHHHHHCCCEEEEECHHHCCCCCCCCCC
T ss_conf             79999718970564010000333564366


No 129
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63  E-value=0.0011  Score=42.79  Aligned_cols=54  Identities=26%  Similarity=0.454  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCC-HHHHHHHCC
Q ss_conf             7268807999706872378999999875200898799997388--556-688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALD-SIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~-~~~a~~~Gv  117 (363)
                      -+|.|.++-|.|+.|||||||+-.++.-.....|.+ ++|...  ..+ ..+.+++|+
T Consensus        31 ~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I-~~~g~~i~~~~~~~~~~~ig~   87 (269)
T PRK13648         31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRKDIGI   87 (269)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHHHHHCEE
T ss_conf             985998999999999979999999964979985099-999999998898999750269


No 130
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=97.63  E-value=0.0037  Score=39.56  Aligned_cols=134  Identities=28%  Similarity=0.448  Sum_probs=81.5

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHH---CCCHH
Q ss_conf             501477278999723897268807999706872378999999875200898799997388556--6889981---98833
Q gi|255764460|r   46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKL---GVDLK  120 (363)
Q Consensus        46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~---Gvd~~  120 (363)
                      +.+.||+.++|.++.+|   +|.=-.|.|..++|||++|+.++.+-...+-.|+|+---..-+  ....+.+   |. ++
T Consensus       125 ePLqTGIkaID~miPIG---RGQRELIiGDrqTGKTaIAldtIiNQk~~~V~cIYVAIGQK~s~Va~iv~~L~~~gA-m~  200 (507)
T PRK07165        125 EQLYTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQKNRNVKCIYVAIGQKRENLSRIYETLKEHDA-LK  200 (507)
T ss_pred             CHHHHHHHHHHCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCC-HH
T ss_conf             61343467876135556---761677735788778899999998454689589999831017799999999987797-56


Q ss_pred             HEE-EEEC-C-CHHHH------HHHHHHHHHCCCCCEEEEECCCCCCC-HHHHH----HHHH-HHCCC----HHHHHHHH
Q ss_conf             448-9725-8-48999------99999997448976899814333220-26554----3455-53022----47888767
Q gi|255764460|r  121 NLL-ISQP-D-TGEQA------LEITDMLVRSGAVDIIVIDSVAALTP-RAEIE----GDMG-ESLPG----MQARLMSQ  181 (363)
Q Consensus       121 ~l~-~~~~-~-~~E~~------~~i~~~li~~~~~~liViDSi~al~p-~~Eie----~~~~-d~~~g----~~ar~ms~  181 (363)
                      +.+ ++-+ + ..+|.      ..++|.+.. +.-.|||+|+++...- -.|+-    ..-+ ++..|    +++|++-+
T Consensus       201 yTiVV~A~sd~p~~qylAPy~g~aiAEyf~~-~~dvLiiyDDLTkhA~AyReisLll~rPPGReayPgdvFy~hsrLLER  279 (507)
T PRK07165        201 NTIIIDAPSTSSYEQYLAPYVAMAHAENISY-NDDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDIFFAHSKLLER  279 (507)
T ss_pred             HEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             5257631577827777788888878898864-685699964768999999988987279999778996057661688888


Q ss_pred             HHH
Q ss_conf             767
Q gi|255764460|r  182 ALR  184 (363)
Q Consensus       182 ~lr  184 (363)
                      +-+
T Consensus       280 a~k  282 (507)
T PRK07165        280 AGK  282 (507)
T ss_pred             HHH
T ss_conf             761


No 131
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.63  E-value=0.00021  Score=47.41  Aligned_cols=112  Identities=14%  Similarity=0.132  Sum_probs=69.4

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-H---CC
Q ss_conf             465501477278999723897268807999706872378999999875200898799997388556-688998-1---98
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-L---GV  117 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~---Gv  117 (363)
                      ..-+.+.||+.++|.++.   +-+|.=+-|+|..++|||+|..+++.+ ...+-.++..=.|..=. .++.+. +   |+
T Consensus       134 ~i~e~l~TGIraID~l~p---igrGQRigIfggsGvGKs~Ll~~I~r~-~~advvVi~lIGeRgrEv~efi~~~~~~~~l  209 (434)
T PRK07196        134 AVDTPLDVGVNAINGLLT---IGKGQRVGLMAGSGVGKSVLLGMITRY-TQADVVVVGLIGERGREVKEFIEHSLQAAGM  209 (434)
T ss_pred             CCCCCCCCCCEEECCCCC---CCCCCEEEECCCCCCCHHHHHHHHHHH-HCCCEEEEEECCEEHHHHHHHHHHHHHCCCC
T ss_conf             888721268624415577---024524210147899789999999897-3799899974222349999999987424674


Q ss_pred             CHHHEEEEECCC--HH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             833448972584--89------999999999744897689981433322
Q gi|255764460|r  118 DLKNLLISQPDT--GE------QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       118 d~~~l~~~~~~~--~E------~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +-.-+++.+.|.  .+      -++.+++.+-.+|.-.|+++||+....
T Consensus       210 ~~svvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A  258 (434)
T PRK07196        210 AKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYA  258 (434)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             3269998458898788889998899899999867985699954746889


No 132
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=97.63  E-value=0.0016  Score=41.89  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=24.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             726880799970687237899999987520
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      =+++|.++-|.|+.||||||++..++.-..
T Consensus        25 ~v~~Ge~~aiiG~SGsGKStl~k~llgll~   54 (254)
T PRK10418         25 TLQRGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             898999999999998789999999957998


No 133
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.63  E-value=0.00024  Score=47.06  Aligned_cols=111  Identities=18%  Similarity=0.243  Sum_probs=66.9

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-CCC-HH
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-6889981-988-33
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-GVD-LK  120 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-Gvd-~~  120 (363)
                      .-+.+.||+.++|.++.   +-+|.=.-|+|..++|||+|.-+++.+++.. -.++-.=.|..=. .++.+.+ |-. ++
T Consensus       143 i~epl~TGIraID~l~p---igrGQR~gIf~gsGvGKstLl~~iar~~~~d-v~V~~lIGeRgrEv~efi~~~~~~~~l~  218 (441)
T PRK09099        143 IEAPLPTGVRIVDGLMT---LGEGQRMGIFAPAGVGKSTLMGMFARGTQCD-VNVIALIGERGREVREFIELILGEDGMA  218 (441)
T ss_pred             CCCCCCCCCEEECCCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf             78741278562236678---0347633001589887899999898751368-6168863721389999999976245632


Q ss_pred             H--EEEEECC-C-HH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             4--4897258-4-89------999999999744897689981433322
Q gi|255764460|r  121 N--LLISQPD-T-GE------QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       121 ~--l~~~~~~-~-~E------~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +  +++...+ + .+      -++.++|.+...|.--|+++||+....
T Consensus       219 ~svvv~atsd~~~~~R~~a~~~a~aiAEyfrd~Gk~VLl~~DslTr~A  266 (441)
T PRK09099        219 RSVVVCATSDRSSIERAKAAYAATAIAEYFRDRGKRVLLMMDSLTRFA  266 (441)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             017986158899889999877501578899866981899707677999


No 134
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63  E-value=0.00061  Score=44.50  Aligned_cols=88  Identities=25%  Similarity=0.317  Sum_probs=47.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHH-----
Q ss_conf             97268807999706872378999999875200898--79999738855668899819883344897258489999-----
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG--TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL-----  134 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~--~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~-----  134 (363)
                      .-+++|.++-|.||.+||||||. .+++.....|.  --+++|.. .....+.+.+|.-...-...+..++++.+     
T Consensus        28 ~~i~~Ge~~~llGpnGaGKSTLl-~~l~g~~~~~~~~G~i~~~g~-~~~~~~~~~igyv~q~~~~~~~~tv~e~l~~~~~  105 (192)
T cd03232          28 GYVKPGTLTALMGESGAGKTTLL-DVLAGRKTAGVITGEILINGR-PLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL  105 (192)
T ss_pred             EEEECCEEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEEEECCE-ECCHHHHHHEEEEECCHHCCCCCHHHHHHHHHHH
T ss_conf             89928839999999999889999-998379878831789998782-7667756227999411330734549999986677


Q ss_pred             ------------HHHHHHHHCCCCCEEEEEC
Q ss_conf             ------------9999997448976899814
Q gi|255764460|r  135 ------------EITDMLVRSGAVDIIVIDS  153 (363)
Q Consensus       135 ------------~i~~~li~~~~~~liViDS  153 (363)
                                  .++..|+.  ..+++++|=
T Consensus       106 l~~LS~gqrqrv~iA~aL~~--~P~lllLDE  134 (192)
T cd03232         106 LRGLSVEQRKRLTIGVELAA--KPSILFLDE  134 (192)
T ss_pred             HHCCCHHHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf             73379767658999999844--998899848


No 135
>PRK08116 hypothetical protein; Validated
Probab=97.62  E-value=0.00088  Score=43.50  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=66.0

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             80799970687237899999987520089879999738855668899819883344897258489999999999744897
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV  146 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~  146 (363)
                      ++=..++|++|+|||.||..++....+.|..|+|+..-.-++. .-..++-          .+-+...++++.+.   .+
T Consensus       108 ~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~-lk~~~~~----------~~~~~~~e~l~~l~---~~  173 (262)
T PRK08116        108 SVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNR-IKSTYNS----------EGKEDENEIIRALD---NA  173 (262)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHHC----------CCCHHHHHHHHHHH---CC
T ss_conf             8618998989998999999999999987993999889999999-9999863----------56101999999861---29


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             689981433322026554345553022478887677677776420178189998634114566546
Q gi|255764460|r  147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG  212 (363)
Q Consensus       147 ~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g  212 (363)
                      ||+|||-+++-.+. +.              ..++++..+.........++|-+|-.-..+...||
T Consensus       174 dLLIiDDlG~e~~t-~w--------------~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~~~  224 (262)
T PRK08116        174 DLLILDDLGAEKDT-EW--------------VREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQYG  224 (262)
T ss_pred             CEEEEEHHCCCCCC-HH--------------HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf             98998322145698-78--------------99999999999997699989987999999999863


No 136
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62  E-value=0.00066  Score=44.28  Aligned_cols=86  Identities=24%  Similarity=0.442  Sum_probs=57.8

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCC-EEEEEECCCCCC-------HHHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf             688079997068723789999998752-00898-799997388556-------688998198833448972584899999
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQS-QKTGG-TCAFVDAEHALD-------SIYARKLGVDLKNLLISQPDTGEQALE  135 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~-~~~~iD~E~~~~-------~~~a~~~Gvd~~~l~~~~~~~~E~~~~  135 (363)
                      ..++++-+.||+|+||||....++|.+ .+.|. .+.+|.+. ++.       ..|++-+||.+.   +  .++.++.-.
T Consensus       208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~D-tyRigA~eQLk~Ya~ilgvp~~---v--~~~~~~l~~  281 (412)
T PRK05703        208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLD-TYRIGAVEQLKTYAKIMGIPVK---V--AYDPKELAK  281 (412)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCHHHHHHHHHHHHHCCCEEE---E--ECCHHHHHH
T ss_conf             567369998888875676999999999997299817999837-6777799999999997197379---8--479999999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf             9999974489768998143332202
Q gi|255764460|r  136 ITDMLVRSGAVDIIVIDSVAALTPR  160 (363)
Q Consensus       136 i~~~li~~~~~~liViDSi~al~p~  160 (363)
                      +++.+   ...|+|+||..+ ..|+
T Consensus       282 al~~~---~~~dlILIDTaG-~s~~  302 (412)
T PRK05703        282 ALEQL---ANCDLILIDTAG-RSQR  302 (412)
T ss_pred             HHHHH---CCCCEEEEECCC-CCCC
T ss_conf             99871---589979996898-8978


No 137
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.62  E-value=0.00021  Score=47.43  Aligned_cols=89  Identities=11%  Similarity=0.222  Sum_probs=58.3

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHH-CCC---HHHEEEE--ECCCHHHH
Q ss_conf             972688079997068723789999998752008987999973885--566889981-988---3344897--25848999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKL-GVD---LKNLLIS--QPDTGEQA  133 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~-Gvd---~~~l~~~--~~~~~E~~  133 (363)
                      .+.|. +..-|||++|+|||.|+.-++.++...+..++|+..+..  +.|+..+.+ ..|   +|.+-..  .+.+-|+.
T Consensus        41 ~~~~~-~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~l~~~dll~iDDi~~i~g~~~~ee~l  119 (235)
T PRK08084         41 RQEHS-GYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAI  119 (235)
T ss_pred             HCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEECHHHHCCCHHHHHHH
T ss_conf             57898-76999899998889999999999970798579987798665179999876418989982745546997899999


Q ss_pred             HHHHHHHHHCCCCCEEEE
Q ss_conf             999999974489768998
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVI  151 (363)
Q Consensus       134 ~~i~~~li~~~~~~liVi  151 (363)
                      |++++.+..++...+|+-
T Consensus       120 F~l~N~~~~~g~~~ll~t  137 (235)
T PRK08084        120 FDLYNRILESGKTRLLIT  137 (235)
T ss_pred             HHHHHHHHHHCCCEEEEE
T ss_conf             999999998489669996


No 138
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.62  E-value=0.0006  Score=44.53  Aligned_cols=111  Identities=23%  Similarity=0.274  Sum_probs=70.1

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-HCCCHHH
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-688998-1988334
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-LGVDLKN  121 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~Gvd~~~  121 (363)
                      .-+.+.||+.++|.++.   +-+|.=.-|+|.+++|||+|+.+++.+ +..+-.++..=.|..-. .++.+. +|-.+++
T Consensus       138 i~epl~TGIraID~l~p---igrGQR~gIf~g~GvGKt~Ll~~i~~~-~~~dv~V~~lIGeR~rEv~efie~~~~~~l~~  213 (435)
T PRK08472        138 IDEVFSVGVKSIDGLLT---CGKGQKLGIFAGSGVGKSTLMGMIVKG-CLAPIKVVALIGERGREIPEFIEKNLGGDLSN  213 (435)
T ss_pred             CCCCCCCCCEEEECCCC---CCCCCEEECCCCCCCCCCHHHHHHHHH-HCCCEEEEEEECEEHHHHHHHHHHHHHHCCCC
T ss_conf             88741158557743266---247766512358999833578888776-15998899761312278999999874113222


Q ss_pred             EE--EEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             48--97258--------489999999999744897689981433322
Q gi|255764460|r  122 LL--ISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       122 l~--~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      .+  +...+        ...-++.++|.+...|.--|+++||++...
T Consensus       214 tvvvvatsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A  260 (435)
T PRK08472        214 TVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFA  260 (435)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             59998468899899988888999999999867984899843627889


No 139
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379    FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=97.61  E-value=0.00069  Score=44.14  Aligned_cols=190  Identities=21%  Similarity=0.333  Sum_probs=115.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-HCC
Q ss_conf             533465501477278999723897268807999706872378999999875200898799997388556-688998-198
Q gi|255764460|r   40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-LGV  117 (363)
Q Consensus        40 ~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~Gv  117 (363)
                      ++...-+.++||.-++|.+|.+|   +|+=+=||..++.|||||. -.+|-..+.+-.|+=+=-|..=- .||.|. ||-
T Consensus       134 ~R~rI~~~l~tGVRaId~lLT~G---rGQR~GIFAGSGVGKSTLL-GMiAr~t~ADV~VIALIGERGREV~EFiE~~LG~  209 (439)
T TIGR02545       134 DRRRIEEVLDTGVRAIDALLTIG---RGQRLGIFAGSGVGKSTLL-GMIARYTEADVNVIALIGERGREVKEFIEDDLGE  209 (439)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCC---CCCEEEEECCCCHHHHHHH-HHHHCCCCCCEEEEEEECCCCCCCHHHHHHHCCC
T ss_conf             78757861121231011103655---6410266337744478898-8875066588789984446566431355430351


Q ss_pred             C---HHHEEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHH--CCCHHHHHHHHH
Q ss_conf             8---33448972584--------89999999999744897689981433--322026554345553--022478887677
Q gi|255764460|r  118 D---LKNLLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVA--ALTPRAEIEGDMGES--LPGMQARLMSQA  182 (363)
Q Consensus       118 d---~~~l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~--al~p~~Eie~~~~d~--~~g~~ar~ms~~  182 (363)
                      .   -+=++++.+|-        +=-|+.|+|.+=.+|.--|+++|||+  |+. +-|+-=..||-  ..|=    -++-
T Consensus       210 eGl~kSVVVVATSD~spl~R~~aA~~A~~iAEYFRDqGk~VLL~~DSlTRFAmA-qREigLa~GEPP~tkGY----pPSV  284 (439)
T TIGR02545       210 EGLKKSVVVVATSDESPLMRIRAAYAATAIAEYFRDQGKDVLLLMDSLTRFAMA-QREIGLAAGEPPTTKGY----PPSV  284 (439)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH-HHHHHHHCCCCCCCCCC----CCHH
T ss_conf             102540799827998689998888999999999986498347762117889989-88999871787666789----7048


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE---------EEEEEE-
Q ss_conf             6777764201781899986341145665466512565531111112489750455344577247---------679998-
Q gi|255764460|r  183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT---------GNQTRV-  252 (363)
Q Consensus       183 lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~i---------G~~v~~-  252 (363)
                      |.+|..++.+.+   +|              |....||..-.||+=+ ++   .   .|-+|+|         ||.|=- 
T Consensus       285 F~~Lp~L~ERaG---~~--------------p~~~~~GsITa~yTVL-Ve---G---DD~~ePiAD~~RgiLDGHIvLsR  340 (439)
T TIGR02545       285 FSELPRLLERAG---IV--------------PGAKGGGSITAFYTVL-VE---G---DDMNEPIADAVRGILDGHIVLSR  340 (439)
T ss_pred             HHHHHHHHHHHC---CC--------------CCCCCCCEEEEEEEEE-EE---C---CCCCCHHHHHHHHHCCCEEEECH
T ss_conf             999999998708---64--------------6988873056899998-73---6---89987378775001022077322


Q ss_pred             EEEECCCCCC
Q ss_conf             7740577898
Q gi|255764460|r  253 KVVKNKMASP  262 (363)
Q Consensus       253 kv~Knk~~~P  262 (363)
                      ++--.-+.||
T Consensus       341 ~lA~~G~YPa  350 (439)
T TIGR02545       341 KLAERGHYPA  350 (439)
T ss_pred             HHHHCCCCCC
T ss_conf             6764588987


No 140
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.61  E-value=0.0009  Score=43.43  Aligned_cols=90  Identities=12%  Similarity=0.019  Sum_probs=53.8

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH---CCCHHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             7999706872378999999875200898799997388556-6889981---98833448972584899999999997448
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSG  144 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~---Gvd~~~l~~~~~~~~E~~~~i~~~li~~~  144 (363)
                      |+-...--|+||||+|++++......|..|+.||+.-.-+ ..|.++.   |.-.....++.++.....-...+. ....
T Consensus         4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~-~~~~   82 (231)
T PRK13849          4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYED-AELQ   82 (231)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH-HHHC
T ss_conf             999618998769999999999999789959999689986889999876525898877523405652578999988-7536


Q ss_pred             CCCEEEEECCCCCCC
Q ss_conf             976899814333220
Q gi|255764460|r  145 AVDIIVIDSVAALTP  159 (363)
Q Consensus       145 ~~~liViDSi~al~p  159 (363)
                      .+|+||||.-+...+
T Consensus        83 ~~D~VIIDtpg~~s~   97 (231)
T PRK13849         83 GFDYALADTHGGSSE   97 (231)
T ss_pred             CCCEEEECCCCCCCH
T ss_conf             998899818997758


No 141
>KOG0780 consensus
Probab=97.60  E-value=0.0013  Score=42.43  Aligned_cols=91  Identities=22%  Similarity=0.247  Sum_probs=59.8

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHH--HE-EEE---ECCCHHHHHHHHHH
Q ss_conf             8807999706872378999999875200898799997388556688998198833--44-897---25848999999999
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NL-LIS---QPDTGEQALEITDM  139 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~--~l-~~~---~~~~~E~~~~i~~~  139 (363)
                      +-.++.+.|.-++||||.|-.++.-.||+|.+|..+-+. +|++.-..++-.+..  ++ +|.   ..+-+--+.+-++.
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaD-TFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780         100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCAD-TFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEEC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             970899983057886300899999998468724577602-2453068999987674077068403665558999999998


Q ss_pred             HHHCCCCCEEEEECCCCCC
Q ss_conf             9744897689981433322
Q gi|255764460|r  140 LVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       140 li~~~~~~liViDSi~al~  158 (363)
                      .-+ +.+|+||+|--+-+-
T Consensus       179 fKk-e~fdvIIvDTSGRh~  196 (483)
T KOG0780         179 FKK-ENFDVIIVDTSGRHK  196 (483)
T ss_pred             HHH-CCCCEEEEECCCCHH
T ss_conf             886-397289982787301


No 142
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.59  E-value=0.0015  Score=42.02  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=63.9

Q ss_pred             HHHHHHHCCCCC------CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH---CCCHHHEE
Q ss_conf             789997238972------688079997068723789999998752008987999973885566889981---98833448
Q gi|255764460|r   53 LGLDIALGIGGF------PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL---GVDLKNLL  123 (363)
Q Consensus        53 ~~lD~~Lg~GG~------p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~---Gvd~~~l~  123 (363)
                      -.|=.+||.+.-      .+-.++.+.|.-+|||||.|-.++.-.++.|.+|+.+.+. .++|.-.++|   |-...--+
T Consensus        80 eELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD-~~RpAA~eQL~~La~q~~v~~  158 (451)
T COG0541          80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD-TYRPAAIEQLKQLAEQVGVPF  158 (451)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCCE
T ss_conf             9999984888766503789985899981567974868999999999749945898505-678689999999998609853


Q ss_pred             EEECCCHHHHHHHHHH---HHHCCCCCEEEEECCCCCC
Q ss_conf             9725848999999999---9744897689981433322
Q gi|255764460|r  124 ISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       124 ~~~~~~~E~~~~i~~~---li~~~~~~liViDSi~al~  158 (363)
                      |. .++.....+|+..   -.++..+|++|||..+-|.
T Consensus       159 f~-~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~  195 (451)
T COG0541         159 FG-SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH  195 (451)
T ss_pred             EC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             16-77889979999999999997499889996887330


No 143
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.59  E-value=0.00085  Score=43.57  Aligned_cols=115  Identities=16%  Similarity=0.276  Sum_probs=71.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf             07999706872378999999875200898799997388556688998198833448972584899999999997448976
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD  147 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~  147 (363)
                      .=..+||++|+|||.||..++.+..+.|..|+|+.+..=++.  .+..-        ...+.-+  -+..+.+.   ..|
T Consensus       184 ~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~--l~~~~--------~~~~~~~--~~~~~~l~---~~D  248 (330)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIEN--LREIR--------FNNDNDA--PELEDLLI---NCD  248 (330)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH--HHHHH--------CCCCCCH--HHHHHHHH---HCC
T ss_conf             866988999998899999999999987994999629999999--99975--------4576448--99999996---189


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             89981433322026554345553022478887677677776420178189998634114566546
Q gi|255764460|r  148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG  212 (363)
Q Consensus       148 liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g  212 (363)
                      |+|||=+++-.+.     +          -..++++..+...+...+.++|-+|---..+...|+
T Consensus       249 LLIIDDLG~E~~t-----~----------~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~~y~  298 (330)
T PRK06835        249 LLIIDDLGTESIT-----E----------FSKTELFNLINKRLLMNKKMIISTNLSLEELLKTYS  298 (330)
T ss_pred             EEEEECCCCCCCC-----H----------HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf             8997210345588-----6----------899999999999986799979988999899999874


No 144
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.58  E-value=0.00069  Score=44.14  Aligned_cols=112  Identities=23%  Similarity=0.334  Sum_probs=56.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEE-EEEECCCCCCHHHHHHHC---CCHH---HEE--------------EEECC
Q ss_conf             99970687237899999987520089879-999738855668899819---8833---448--------------97258
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTC-AFVDAEHALDSIYARKLG---VDLK---NLL--------------ISQPD  128 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~-~~iD~E~~~~~~~a~~~G---vd~~---~l~--------------~~~~~  128 (363)
                      +-|.|+|++||||+++.++-..+..|..+ =|+..|-+-+   -++.|   +|++   +-+              .+..+
T Consensus         8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g---GkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~   84 (179)
T COG1618           8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG---GKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE   84 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECC---CEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHH
T ss_conf             9986799845899999999999855966513983114208---8275159998147955798884788762104786278


Q ss_pred             CHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             4899-9999999974489768998143332202655434555302247888767767777642017818999863411
Q gi|255764460|r  129 TGEQ-ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       129 ~~E~-~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      ..|+ +...+....++  -|+||||-++.|-    +               -|+.++....-+-++..++|++=|-|+
T Consensus        85 ~le~i~~~al~rA~~~--aDvIIIDEIGpME----l---------------ks~~f~~~ve~vl~~~kpliatlHrrs  141 (179)
T COG1618          85 GLEEIAIPALRRALEE--ADVIIIDEIGPME----L---------------KSKKFREAVEEVLKSGKPLIATLHRRS  141 (179)
T ss_pred             HHHHHHHHHHHHHHHC--CCEEEEECCCCHH----H---------------CCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             8899868999988634--9989994336330----2---------------008899999999658993799996256


No 145
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities.  The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58  E-value=0.0018  Score=41.49  Aligned_cols=90  Identities=26%  Similarity=0.408  Sum_probs=54.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCH-HHHHHHCCCHHHEEEEECCC--------HH
Q ss_conf             7268807999706872378999999875200898799997388--5566-88998198833448972584--------89
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDS-IYARKLGVDLKNLLISQPDT--------GE  131 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~-~~a~~~Gvd~~~l~~~~~~~--------~E  131 (363)
                      -+++|.++-|.|+.+||||||+-.++.-.....|.+ ++|...  .+++ ++.+.+|.=+-+-.++ +.|        +|
T Consensus        24 ~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~tv~eNiLSgGq  101 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIAYVPQDPFLF-SGTIRENILSGGQ  101 (171)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCC-CCCHHHHCCCHHH
T ss_conf             985998999999999839999999976775897489-99999988599899863189996668437-5779997744889


Q ss_pred             -HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             -9999999997448976899814333
Q gi|255764460|r  132 -QALEITDMLVRSGAVDIIVIDSVAA  156 (363)
Q Consensus       132 -~~~~i~~~li~~~~~~liViDSi~a  156 (363)
                       |-+.++..|++.  .+++++|--.+
T Consensus       102 ~Qri~lARal~~~--p~illlDEpts  125 (171)
T cd03228         102 RQRIAIARALLRD--PPILILDEATS  125 (171)
T ss_pred             HHHHHHHHHHHHC--CCEEEEECCCC
T ss_conf             9999999999748--99899957766


No 146
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57  E-value=0.0017  Score=41.74  Aligned_cols=54  Identities=26%  Similarity=0.214  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CC-HHHHHHHCC
Q ss_conf             72688079997068723789999998752008987999973885--56-688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LD-SIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~-~~~a~~~Gv  117 (363)
                      -++.|.++-|.|+.|||||||+-.++.-.....|.+ ++|...-  .+ .++.+++|+
T Consensus        29 ~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~I-~i~G~~i~~~~~~~lr~~ig~   85 (279)
T PRK13635         29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVWDVRKQIGM   85 (279)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEE
T ss_conf             887998999999999659999999972888889649-999999985787999743668


No 147
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56  E-value=0.0026  Score=40.52  Aligned_cols=51  Identities=24%  Similarity=0.337  Sum_probs=34.2

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             727899972389726880799970687237899999987520089879999738
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      |..+|+-+ . =-++.|.++-|.||.|||||||+.++..-.....|.+ ++|..
T Consensus        18 g~~aL~~i-s-l~I~~Ge~~aiiG~NGaGKSTLl~~i~Gll~p~~G~I-~~~G~   68 (285)
T PRK13636         18 GTHALKGI-N-INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGK   68 (285)
T ss_pred             CCEEEEEE-E-EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCE
T ss_conf             98887613-7-8987998999999999809999999965988886089-99999


No 148
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.56  E-value=0.00024  Score=47.10  Aligned_cols=121  Identities=24%  Similarity=0.323  Sum_probs=73.1

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-HCCC-HH
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-688998-1988-33
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-LGVD-LK  120 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~Gvd-~~  120 (363)
                      .-+.+.||+.++|.++..|   +|.=+-|+|.+++|||+|..+++.++ ..+-.++-.=.|..=. .++.+. +|-+ ++
T Consensus       142 i~epl~TGIraID~llt~g---~GQR~gIfagsGvGKs~Ll~~i~r~~-~adv~V~alIGERgrEv~efie~~l~~~gl~  217 (439)
T PRK06936        142 IETPLSLGVRVIDGLLTCG---EGQRMGIFAAAGGGKSTLLASLIRSA-EVDVTVLALIGERGREVREFIESDLGEEGLR  217 (439)
T ss_pred             CCCCCCCCCEEEECCCCHH---CCCEEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf             7874226855552468631---05701023699998899999997643-2695799980730899999999864125431


Q ss_pred             H--EEEEECCC--HH------HHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHH
Q ss_conf             4--48972584--89------999999999744897689981433322-0265543455
Q gi|255764460|r  121 N--LLISQPDT--GE------QALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMG  168 (363)
Q Consensus       121 ~--l~~~~~~~--~E------~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~  168 (363)
                      +  +++.+.|.  .+      -++.++|.+-..|.-.|+++||+.... -..|+--.++
T Consensus       218 rsvvV~atsd~p~~~R~~aa~~a~aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~g  276 (439)
T PRK06936        218 KAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAG  276 (439)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             06999618989989999999887788999985898489993567899999989998668


No 149
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.55  E-value=0.0015  Score=41.94  Aligned_cols=47  Identities=19%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH
Q ss_conf             7268807999706872378999999875200898799997388--55668
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSI  110 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~~  110 (363)
                      -++.|-++-|.||.|||||||. .+++...+...--++++.+.  .+++.
T Consensus        32 ~i~~GE~v~ivG~sGsGKSTLl-~~i~Gl~~p~~G~I~~~G~~~~~~~~~   80 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHNMDEE   80 (228)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEECCCCCHH
T ss_conf             9999989999999985899999-999669999967999999999979988


No 150
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.55  E-value=0.00058  Score=44.65  Aligned_cols=124  Identities=24%  Similarity=0.314  Sum_probs=77.2

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCHHHHHH-HCCC-
Q ss_conf             34655014772789997238972688079997068723789999998752008987999973885-56688998-1988-
Q gi|255764460|r   42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-LDSIYARK-LGVD-  118 (363)
Q Consensus        42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~-~~~~~a~~-~Gvd-  118 (363)
                      ...-+.++||+-++|..|.+|   .|.=+-||..+++|||||. .+++...+.+-.|+=+=.|.. =-.+|.++ +|-. 
T Consensus       141 ~~I~~~l~tGVRaIDgllT~G---~GQRiGIFAgsGVGKStLL-gMiar~t~aDv~ViaLIGERGREVrEFIE~~Lg~eg  216 (441)
T COG1157         141 RPIEEPLDTGVRAIDGLLTCG---KGQRIGIFAGSGVGKSTLL-GMIARNTEADVNVIALIGERGREVREFIEKDLGEEG  216 (441)
T ss_pred             CCCCCCCCCCCEEEECCCCCC---CCCEEEEEECCCCCHHHHH-HHHHCCCCCCEEEEEEEECCCHHHHHHHHHHCCHHH
T ss_conf             654664545614440100224---6746788716998689999-999624669879999760664059999998602330


Q ss_pred             HHHE-EEE-ECCC--------HHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHH
Q ss_conf             3344-897-2584--------89999999999744897689981433322-02655434555
Q gi|255764460|r  119 LKNL-LIS-QPDT--------GEQALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMGE  169 (363)
Q Consensus       119 ~~~l-~~~-~~~~--------~E~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~d  169 (363)
                      +.+- +++ ..|-        +--+..|++.+=..|.--|+++||++-.. .+.|+--..++
T Consensus       217 l~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GE  278 (441)
T COG1157         217 LKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGE  278 (441)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCC
T ss_conf             35269999789889899988899999999999867985999961388999999888875289


No 151
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380    Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=97.55  E-value=0.0011  Score=42.89  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=76.2

Q ss_pred             CCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHH-HH
Q ss_conf             55334655-01477278999723897268807999706872378999999875200898799997388556-68899-81
Q gi|255764460|r   39 GSIFEGIE-VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYAR-KL  115 (363)
Q Consensus        39 ~~~~~~~~-~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~-~~  115 (363)
                      .-.++.|+ .+|||+-++|-+|-+|   .|.=+=||..+|||||||.-++|. ..+.+-.|+=+=-|..=- .||+| .+
T Consensus       127 P~~R~~I~~PL~tGvRaiDGlLTcG---~GQRiGIFA~aG~GKSTLL~~i~~-g~~ADv~V~ALIGERGREVREFiE~~l  202 (430)
T TIGR02546       127 PMSRQPIDQPLPTGVRAIDGLLTCG---EGQRIGIFAGAGVGKSTLLGMIAR-GASADVNVIALIGERGREVREFIEHLL  202 (430)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf             8767533465101466754344036---653057870888616689999861-898878998602787604788875207


Q ss_pred             CCC-HHH-EEEEEC-C--CHHH------HHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             988-334-489725-8--4899------99999999744897689981433
Q gi|255764460|r  116 GVD-LKN-LLISQP-D--TGEQ------ALEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       116 Gvd-~~~-l~~~~~-~--~~E~------~~~i~~~li~~~~~~liViDSi~  155 (363)
                      |-+ .+| ++|+.+ |  +.|-      |..|+|.+=.+|.--|++.||++
T Consensus       203 g~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAEYFRDQGk~VlLmmDSlT  253 (430)
T TIGR02546       203 GEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLT  253 (430)
T ss_pred             CHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHH
T ss_conf             830524248996079866799999987887999999973990798840277


No 152
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.55  E-value=0.0015  Score=42.11  Aligned_cols=78  Identities=23%  Similarity=0.224  Sum_probs=45.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHHCCCHHHEEEEECCCHHHHHHHHHH
Q ss_conf             97268807999706872378999999875200898799997388556--6889981988334489725848999999999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKLGVDLKNLLISQPDTGEQALEITDM  139 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~  139 (363)
                      .-++.|.++-+-||.++|||||. .+++...+...--+.++.+.-.+  +++-+++|.=++...+.+--|++|.++.+..
T Consensus        26 ~~i~~Gei~gllG~NGAGKTTll-k~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lTv~e~l~~~~~  104 (293)
T COG1131          26 FEVEPGEIFGLLGPNGAGKTTLL-KILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR  104 (293)
T ss_pred             EEEECCEEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEECCCCCCCCHHHHHCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             99828959999899999899999-99967977886499995862751267650529999478777714759999999999


Q ss_pred             H
Q ss_conf             9
Q gi|255764460|r  140 L  140 (363)
Q Consensus       140 l  140 (363)
                      +
T Consensus       105 l  105 (293)
T COG1131         105 L  105 (293)
T ss_pred             H
T ss_conf             8


No 153
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together phylogenetically.  MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all.  An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport.  The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.54  E-value=0.0022  Score=41.01  Aligned_cols=41  Identities=32%  Similarity=0.465  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             268807999706872378999999875200898799997388
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      ++.|.++-|.||.+||||||+ .+++...+...--++++.+.
T Consensus        27 i~~Ge~~~iiG~sGsGKTTll-~~i~Gl~~p~~G~I~~~g~~   67 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTD   67 (218)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             869989999999998699999-99966999996499999999


No 154
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.54  E-value=0.00036  Score=45.93  Aligned_cols=114  Identities=23%  Similarity=0.387  Sum_probs=75.0

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHH--HHHCCCEEEEEECCCCCCHHHHHHH-------CCCHHHEEEEE-CCCHH
Q ss_conf             97268807999706872378999999875--2008987999973885566889981-------98833448972-58489
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKL-------GVDLKNLLISQ-PDTGE  131 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~--~qk~g~~~~~iD~E~~~~~~~a~~~-------Gvd~~~l~~~~-~~~~E  131 (363)
                      ..-|.  ++.+.|.=||||||+|-.++.-  --+.|..|+.+-+- .++|.-.++|       ||+.     ++ ..+.+
T Consensus        99 ~~~P~--vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D-~yRPAA~~QL~~Lg~Q~gVpv-----f~h~~~~~  170 (439)
T TIGR00959        99 EKRPT--VILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACD-LYRPAAIEQLKVLGEQVGVPV-----FAHLGKGQ  170 (439)
T ss_pred             CCCCE--EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHH-CCCHHHHHHHHHHHHHCCCCC-----CCCCCCCC
T ss_conf             78683--89973137885788999999999998638970340321-034789999999767528871-----10047888


Q ss_pred             H---HHHHHHH---HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             9---9999999---974489768998143332202655434555302247888767767777642017818999
Q gi|255764460|r  132 Q---ALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF  199 (363)
Q Consensus       132 ~---~~~i~~~---li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~  199 (363)
                      .   ..+|+..   ..++..+|+||||..|    |.+||..           +|. -|..+-..++=+.+.+|.
T Consensus       171 ~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAG----RL~ID~~-----------LM~-EL~~iK~~~nP~EiLlVv  228 (439)
T TIGR00959       171 SPDDPVEIARQALEEAKENGFDVVIVDTAG----RLQIDEE-----------LME-ELAEIKEILNPDEILLVV  228 (439)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCC----CHHHHHH-----------HHH-HHHHHHHHHCCCEEEECC
T ss_conf             988778999999999997489789972675----1255599-----------999-999998886887054122


No 155
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin.  In addition to DrrA, the complex includes an integral membrane protein called DrrB.  DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called  P-glycoprotein.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53  E-value=0.0015  Score=42.02  Aligned_cols=70  Identities=24%  Similarity=0.435  Sum_probs=39.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCC-CH-HHHHHHCCCHHHEEEEECCCHHHHH
Q ss_conf             72688079997068723789999998752008-9879999738855-66-8899819883344897258489999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHAL-DS-IYARKLGVDLKNLLISQPDTGEQAL  134 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~-~~-~~a~~~Gvd~~~l~~~~~~~~E~~~  134 (363)
                      -++.|.++-+-||.++||||+. .+++...+. .|.+ +|+...-. ++ +..+++|+=+..-.+.+--|+.|.+
T Consensus        22 ~v~~Gei~gllGpNGAGKSTll-~~i~Gl~~p~~G~i-~i~G~~~~~~~~~~r~~ig~~pq~~~l~~~lTv~e~l   94 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTI-KMLTTLLKPTSGRA-TVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENL   94 (220)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEE-EECCEECCCCHHHHHHCCEEEECCCCCCCCCCHHHHH
T ss_conf             9889839999999987199999-99976978896289-9999998839899982838990787679889999999


No 156
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.53  E-value=0.00029  Score=46.57  Aligned_cols=113  Identities=15%  Similarity=0.209  Sum_probs=68.1

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-CCC-
Q ss_conf             3465501477278999723897268807999706872378999999875200898799997388556-6889981-988-
Q gi|255764460|r   42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-GVD-  118 (363)
Q Consensus        42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-Gvd-  118 (363)
                      ....+.+.||+.++|.++.   +.+|.=.-|+|.+++|||+|.-+++.+++ .+-.++-.=.|.+=. .++.+.. |-. 
T Consensus       115 ~~i~epl~TGIraID~l~p---ig~GQR~gIf~g~GvGKs~Ll~~ia~~~~-adv~VialIGeR~rev~efie~~~~~~~  190 (411)
T TIGR03496       115 APIDEPLDVGVRAINGLLT---VGRGQRIGIFAGSGVGKSVLLGMMARYTE-ADVVVVGLIGERGREVKEFIEEILGEEG  190 (411)
T ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCEEEECCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             7877621158346634466---14686313227999867799999975348-9889995325305899999998622256


Q ss_pred             HHH--EEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             334--4897258--------489999999999744897689981433322
Q gi|255764460|r  119 LKN--LLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       119 ~~~--l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      +++  +++.+.|        ...-++.++|.+-..|.--|+++||+....
T Consensus       191 ~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A  240 (411)
T TIGR03496       191 LARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFA  240 (411)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             52169999438899899999999999999999966994699974688999


No 157
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53  E-value=0.0016  Score=41.77  Aligned_cols=55  Identities=20%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC--C-HHHHHHHCC
Q ss_conf             9726880799970687237899999987520089879999738855--6-688998198
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL--D-SIYARKLGV  117 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~--~-~~~a~~~Gv  117 (363)
                      =-+|.|.++-|-||.|||||||+-+++.-.....|.+ ++|.+.-.  + .++.+.+|+
T Consensus        25 ~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G~I-~i~G~~i~~~~~~~~r~~ig~   82 (277)
T PRK13652         25 FIAGRKQRIAVIGPNGAGKSTLFKHFNGILKPTSGSV-LIRGEPITKENIREVRKFVGL   82 (277)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHHHHCCEE
T ss_conf             7998998999999999479999999966999984699-999999998999999713289


No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.53  E-value=0.00087  Score=43.51  Aligned_cols=89  Identities=26%  Similarity=0.443  Sum_probs=58.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCHHHHHHHCC-C----------HHHEEE-----
Q ss_conf             97268807999706872378999999875-200898799997388556688998198-8----------334489-----
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDSIYARKLGV-D----------LKNLLI-----  124 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E~~~~~~~a~~~Gv-d----------~~~l~~-----  124 (363)
                      +|.+.+-+- |||++|.|||-|. |.+++ ..+.+..++|+.+|. |.-++...+.- +          .|-|++     
T Consensus       137 ~g~~yNPLf-IyG~~GlGKTHLL-~AIgn~i~~~~~kV~Yvtae~-F~~~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQf  213 (455)
T PRK12422        137 KGFPFNPIY-LFGPEGSGKTHLM-QAAVSALRESGGKILYVSSEL-FTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEV  213 (455)
T ss_pred             CCCCCCCEE-EECCCCCCHHHHH-HHHHHHHHCCCCEEEEECHHH-HHHHHHHHHHCCCHHHHHHHHHCCCEEEEEHHHH
T ss_conf             887678758-8789999789999-999998537998699974999-9999999997588999999996388776314788


Q ss_pred             --EECCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             --72584899999999997448976899814
Q gi|255764460|r  125 --SQPDTGEQALEITDMLVRSGAVDIIVIDS  153 (363)
Q Consensus       125 --~~~~~~E~~~~i~~~li~~~~~~liViDS  153 (363)
                        -.+.|.|+.+.+.+.|...+.--++--|-
T Consensus       214 l~gK~~tqeEff~tfN~L~~~~KQIVitsDr  244 (455)
T PRK12422        214 FSGKGATQEEFFHTFNSLHTEGKLIVISSSY  244 (455)
T ss_pred             HHCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             7284889999999999999859969996898


No 159
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.53  E-value=0.0011  Score=42.83  Aligned_cols=137  Identities=20%  Similarity=0.236  Sum_probs=74.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566889981988334489725848999999999974
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~  142 (363)
                      =++.+.-+-++|+||+|||.||.-+.-++.+.|..|.|+.+     |+++..+--..+.      .+.|..  +...+  
T Consensus       101 ~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~-----~el~~~Lk~~~~~------~~~~~~--l~~~l--  165 (254)
T COG1484         101 FFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA-----PDLLSKLKAAFDE------GRLEEK--LLREL--  165 (254)
T ss_pred             HHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH-----HHHHHHHHHHHHC------CCHHHH--HHHHH--
T ss_conf             73258828998999987999999999999983984999885-----9999999998745------526899--99887--


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC-CCCCC
Q ss_conf             48976899814333220265543455530224788876776777764201781899986341145665466512-56553
Q gi|255764460|r  143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET-TTGGN  221 (363)
Q Consensus       143 ~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~-~~GG~  221 (363)
                       ..+||+|||-+++..--.. ..              +-++..+......... ++-.|.--...+-.||+|.. ..=..
T Consensus       166 -~~~dlLIiDDlG~~~~~~~-~~--------------~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~d  228 (254)
T COG1484         166 -KKVDLLIIDDIGYEPFSQE-EA--------------DLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLD  228 (254)
T ss_pred             -HHCCEEEEECCCCCCCCCH-HH--------------HHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHH
T ss_conf             -5289899823677668815-58--------------7999999999973054-20205882788866067511689999


Q ss_pred             CCCCCCCEEE
Q ss_conf             1111112489
Q gi|255764460|r  222 ALKFYSSVRL  231 (363)
Q Consensus       222 al~~~aS~rl  231 (363)
                      .+-|.+.+..
T Consensus       229 Ri~~~~~~~~  238 (254)
T COG1484         229 RILHHSHVIV  238 (254)
T ss_pred             HHHHCCCCEE
T ss_conf             9986161037


No 160
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.53  E-value=0.0024  Score=40.70  Aligned_cols=55  Identities=31%  Similarity=0.533  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCC--CCCH-HHHHHHCCCH
Q ss_conf             72688079997068723789999998752008-98799997388--5566-8899819883
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEH--ALDS-IYARKLGVDL  119 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~--~~~~-~~a~~~Gvd~  119 (363)
                      =+|.|.++-|.||.|||||||+ .++....+. .|.+ ++|.+.  .+++ ++++++|.-+
T Consensus        33 ~i~~Ge~~~liG~NGaGKSTLl-~~l~gl~~p~~G~I-~~~g~~i~~~~~~~~~~~i~~v~   91 (265)
T PRK10575         33 TFPAGKVTGLIGHNGSGKSTLL-KMLGRHQPPSEGEI-LLDAQPLASWSSKAFARKVAYLP   91 (265)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEEC
T ss_conf             9879989999999998099999-99956889987389-99976567589899874466631


No 161
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52  E-value=0.0026  Score=40.50  Aligned_cols=54  Identities=28%  Similarity=0.421  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----CC-HHHHHHHCC
Q ss_conf             72688079997068723789999998752008987999973885----56-688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA----LD-SIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~----~~-~~~a~~~Gv  117 (363)
                      -++.|.++-|.|+.|||||||+-.++.-.....|. +++|...-    .+ .+..+++|+
T Consensus        29 ~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G~-V~i~G~~i~~~~~~~~~~r~~iG~   87 (287)
T PRK13637         29 EIEDGEFVALIGHTGSGKSTLIQHLNGLLKPTSGK-IIIDGVDITDKKVKLSDIRKKVGL   87 (287)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCCCHHHHHHCEEE
T ss_conf             98799899999999939999999997399888726-999999987888677888741789


No 162
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase).  A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.52  E-value=0.00077  Score=43.85  Aligned_cols=112  Identities=14%  Similarity=0.266  Sum_probs=69.9

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH---HH-CCCEEEEEECCCCCC--HHHHHHH--
Q ss_conf             655014772789997238972688079997068723789999998752---00-898799997388556--6889981--
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS---QK-TGGTCAFVDAEHALD--SIYARKL--  115 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~---qk-~g~~~~~iD~E~~~~--~~~a~~~--  115 (363)
                      ..+.+.||+.++|.++.   +.+|.=.-|+|..+.|||+|+..++.++   |+ ..-.|+|.-.=..-+  .++.+.+  
T Consensus        49 v~e~l~TGIkaID~l~p---ig~GQR~gIfgg~GvGKs~L~~~i~~~~~~~~~~~~~v~V~~~IGer~rev~e~~~~l~~  125 (276)
T cd01135          49 PEEMIQTGISAIDGMNT---LVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE  125 (276)
T ss_pred             CCCCCCCCCEEEECCCC---CCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEHHHHHHHHHHHHC
T ss_conf             78632258535405467---236766332057886367899999998775136887359996155532579999999871


Q ss_pred             -C-CCHHHEEEEECCC--HH------HHHHHHHHHH-HCCCCCEEEEECCCCCC
Q ss_conf             -9-8833448972584--89------9999999997-44897689981433322
Q gi|255764460|r  116 -G-VDLKNLLISQPDT--GE------QALEITDMLV-RSGAVDIIVIDSVAALT  158 (363)
Q Consensus       116 -G-vd~~~l~~~~~~~--~E------~~~~i~~~li-~~~~~~liViDSi~al~  158 (363)
                       | ++-.-+++.+.+.  .+      -++.++|.+- ..|.--|+++||+....
T Consensus       126 ~~~l~~tvvv~ata~~~p~~r~~a~~~a~aiAEyFr~~~Gk~VLl~~D~ltr~A  179 (276)
T cd01135         126 TGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA  179 (276)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             665121014663488976888788888778999988736997799945688999


No 163
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.52  E-value=0.00077  Score=43.84  Aligned_cols=32  Identities=41%  Similarity=0.722  Sum_probs=24.6

Q ss_pred             HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             72389726880799970687237899999987520
Q gi|255764460|r   58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        58 ~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      .|| +=+|+| + .++|||+||||.||-.++.++.
T Consensus       179 ~~G-ak~PkG-v-LL~GPPGtGKTlLAkAvAgEa~  210 (644)
T PRK10733        179 KLG-GKIPKG-V-LMVGPPGTGKTLLAKAIAGEAK  210 (644)
T ss_pred             HCC-CCCCCC-E-EEECCCCCCHHHHHHHHHCCCC
T ss_conf             749-979985-1-7779899877899999864559


No 164
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.52  E-value=0.0014  Score=42.26  Aligned_cols=110  Identities=21%  Similarity=0.278  Sum_probs=60.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHCCCHHHEEEEECCCHH-HHHHHHHHH
Q ss_conf             726880799970687237899999987520089879999738-855668899819883344897258489-999999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-HALDSIYARKLGVDLKNLLISQPDTGE-QALEITDML  140 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E-~~~~~~~a~~~Gvd~~~l~~~~~~~~E-~~~~i~~~l  140 (363)
                      =++.|-++-|.||.+||||||.-.++...+...|.+.| |.. -++.|.+.             +-.-+| |-+.++..|
T Consensus        21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~-~g~~~~~~pq~~-------------~LSGGqrQRv~iAral   86 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW-DGITPVYKPQYI-------------DLSGGELQRVAIAAAL   86 (177)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE-CCCCEECCCCCC-------------CCCHHHHHHHHHHHHH
T ss_conf             55899899998999999999999996886788994666-686122155515-------------0798999999999998


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             7448976899814333220265543455530224788876776777764201781899986341
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       141 i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                      +..  .+++++|==.     +-+|           +......++.+.....+.+.+++++.|-.
T Consensus        87 ~~~--p~lllLDEPt-----s~LD-----------~~~r~~i~~~ik~l~~~~~~Tvl~vsHdl  132 (177)
T cd03222          87 LRN--ATFYLFDEPS-----AYLD-----------IEQRLNAARAIRRLSEEGKKTALVVEHDL  132 (177)
T ss_pred             HCC--CCEEEECCCC-----CCCC-----------HHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             239--9999974886-----5389-----------99999999999999996597799985889


No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.52  E-value=0.0005  Score=45.02  Aligned_cols=31  Identities=39%  Similarity=0.669  Sum_probs=23.8

Q ss_pred             HCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             2389726880799970687237899999987520
Q gi|255764460|r   59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        59 Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      || +=+|+|  +.++|||++|||.||--++.++.
T Consensus       205 ~G-ak~PkG--vLL~GpPGTGKTlLAkAvAgEa~  235 (631)
T CHL00176        205 VG-AKIPKG--VLLVGPPGTGKTLLAKAIAGEAE  235 (631)
T ss_pred             CC-CCCCCE--EEEECCCCCCHHHHHHHHHCCCC
T ss_conf             49-968965--89889899878899999856558


No 166
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.52  E-value=0.0019  Score=41.40  Aligned_cols=42  Identities=26%  Similarity=0.461  Sum_probs=30.6

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf             8972688079997068723789999998752008-9879999738
Q gi|255764460|r   61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAE  104 (363)
Q Consensus        61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E  104 (363)
                      .|-|+.|-++-|.||.+||||||. .+++...+. +|.+ +++.+
T Consensus        19 ~Gti~~GEiv~liGpNGaGKSTLl-k~l~Gll~p~~G~I-~~~g~   61 (246)
T cd03237          19 GGSISESEVIGILGPNGIGKTTFI-KMLAGVLKPDEGDI-EIELD   61 (246)
T ss_pred             CCCCCCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEE-EECCC
T ss_conf             884657989999979997699999-99977878886079-98982


No 167
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.51  E-value=0.0003  Score=46.41  Aligned_cols=111  Identities=14%  Similarity=0.183  Sum_probs=69.5

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH----CCC
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-6889981----988
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL----GVD  118 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~----Gvd  118 (363)
                      .-+.++||+.++|.++.   +-+|.=.-|+|..++|||+|.-.++.++ ..+-.|+.+=.|..-. .++.+.+    |++
T Consensus       148 i~epl~TGIraID~l~p---igrGQR~gIfggsGvGKS~Ll~~i~r~~-~adv~Vi~lIGERgrEv~efi~~~l~~~~~~  223 (451)
T PRK05688        148 ISEPLDVGIRSINGLLT---VGRGQRLGLFAGTGVGKSVLLGMMTRFT-EADIIVVGLIGERGREVKEFIEHILGEEGLK  223 (451)
T ss_pred             CCCCEECCCEEEECCCC---CCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEEEEEEHHHHHHHHHHHHHCCCCC
T ss_conf             78620038468845467---2467564210488986899999998852-7986999961277599999999985156743


Q ss_pred             HHHEEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             33448972584--------89999999999744897689981433322
Q gi|255764460|r  119 LKNLLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       119 ~~~l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      -.-+++.+.|.        .--++.++|.+-..|.-.|+++||+.-..
T Consensus       224 ~svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A  271 (451)
T PRK05688        224 RSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYA  271 (451)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             058983388898799999998765589999867982599970557778


No 168
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=97.51  E-value=0.0014  Score=42.16  Aligned_cols=90  Identities=23%  Similarity=0.281  Sum_probs=54.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHCCCHHHEEEEECCCHH-------
Q ss_conf             9726880799970687237899999987520089879999738--855668-899819883344897258489-------
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLGVDLKNLLISQPDTGE-------  131 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~Gvd~~~l~~~~~~~~E-------  131 (363)
                      =-+++|.++-|.|+.+||||||+-.++.-.....|.+. +|..  ..++++ +.+.+|.=+.+..++. .|..       
T Consensus        23 l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~-i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~-~ti~eNiLSGG  100 (173)
T cd03246          23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR-LDGADISQWDPNELGDHVGYLPQDDELFS-GSIAENILSGG  100 (173)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-ECCEECCCCCHHHHHCCEEEEECCCEECC-CCHHHHCCCHH
T ss_conf             99859999999999998099999999666667999899-99999332899898420899908883677-75899767699


Q ss_pred             --HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             --999999999744897689981433
Q gi|255764460|r  132 --QALEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       132 --~~~~i~~~li~~~~~~liViDSi~  155 (363)
                        |-+.++..|.+.  .+++++|--.
T Consensus       101 QkQRvalARal~~~--p~ililDEpt  124 (173)
T cd03246         101 QRQRLGLARALYGN--PRILVLDEPN  124 (173)
T ss_pred             HHHHHHHHHHHHCC--CCEEEEECCC
T ss_conf             99999999998279--9999996876


No 169
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.50  E-value=0.00054  Score=44.83  Aligned_cols=121  Identities=18%  Similarity=0.300  Sum_probs=71.8

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-CCC-HH
Q ss_conf             65501477278999723897268807999706872378999999875200898799997388556-6889981-988-33
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-GVD-LK  120 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-Gvd-~~  120 (363)
                      .-+.+.||+.++|.++..|   +|.=+-|+|..++|||+|.. .+++....+-.|+.+=.|..=. .++.+.+ |-+ ++
T Consensus       140 i~epl~TGIkaID~l~pig---rGQRigIf~gsGvGKS~Ll~-~i~r~~~advvVi~lIGERgrEv~efie~~l~~~~~~  215 (440)
T PRK08972        140 ITEPLDVGVRAINAMLTVG---KGQRMGLFAGSGVGKSVLLG-MMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRA  215 (440)
T ss_pred             CCCCCCCCCEEEECCCCCC---CCCEEEECCCCCCCHHHHHH-HHHHCCCCCEEEEEEECEEHHHHHHHHHHHHCCCCCE
T ss_conf             7861015834563436712---46466631578975899998-8875147878999862313699999999985047744


Q ss_pred             H--EEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHHHHH
Q ss_conf             4--48972584--------899999999997448976899814333220-265543455
Q gi|255764460|r  121 N--LLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVAALTP-RAEIEGDMG  168 (363)
Q Consensus       121 ~--l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~al~p-~~Eie~~~~  168 (363)
                      +  +++.+.|.        ..-++.++|.+-..|.--|+++||+....- ..|+-..++
T Consensus       216 rsvvV~atsd~~p~~R~~a~~~A~tiAEyFrd~G~~VLl~~DslTR~A~A~REisl~~g  274 (440)
T PRK08972        216 RSVVVAAPADTSPLMRLKGCETATRIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG  274 (440)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             78999704888868899999999988999996799779996355677788878998748


No 170
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50  E-value=0.0054  Score=38.52  Aligned_cols=54  Identities=20%  Similarity=0.290  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC---HHHHHHHCC
Q ss_conf             7268807999706872378999999875200898799997388556---688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD---SIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~---~~~a~~~Gv  117 (363)
                      =++.|.++-|.|+.|||||||+-.+..-.....|. +++|.+.-..   ++..+++|+
T Consensus        26 ~i~~GE~vaivG~nGsGKSTL~~~l~Gll~p~~G~-I~i~G~~i~~~~~~~lr~~ig~   82 (276)
T PRK13650         26 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGS-IIIDGDLLTEENVWEIRHKIGM   82 (276)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHCEEE
T ss_conf             99899899999999987999999997388988608-9999999986776887641469


No 171
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.50  E-value=0.0011  Score=42.91  Aligned_cols=90  Identities=19%  Similarity=0.298  Sum_probs=53.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHHCCCHHHEEEEE---------CCCHH
Q ss_conf             72688079997068723789999998752008987999973885--56688998198833448972---------58489
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKNLLISQ---------PDTGE  131 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~Gvd~~~l~~~~---------~~~~E  131 (363)
                      -+++|..+-|-|+.+||||||.-.++.......|.+ ++|.+.-  ++.++.+.+|.=+-+..++.         .-++-
T Consensus        24 ~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i-~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgG  102 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG  102 (178)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEE-EECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHH
T ss_conf             986999999999998759999999986176678869-9999988997899997208983556364541998628888999


Q ss_pred             --HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             --999999999744897689981433
Q gi|255764460|r  132 --QALEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       132 --~~~~i~~~li~~~~~~liViDSi~  155 (363)
                        |-+.++..|+..  .+++++|=-.
T Consensus       103 qkqRv~iAral~~~--p~ililDEpt  126 (178)
T cd03247         103 ERQRLALARILLQD--APIVLLDEPT  126 (178)
T ss_pred             HHHHHHHHHHHHHC--CCEEEECCCC
T ss_conf             99999999999649--7976722865


No 172
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417   The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity.  ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=97.49  E-value=0.0012  Score=42.55  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=19.0

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             07999706872378999999875
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      +++-|-|++|||||||+-.++..
T Consensus       176 k~V~ilG~eStGKstLv~~lA~~  198 (346)
T TIGR01526       176 KTVAILGGESTGKSTLVNKLAEK  198 (346)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             58888558886368999999998


No 173
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=97.49  E-value=0.0021  Score=41.12  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             726880799970687237899999987520089879999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV  101 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i  101 (363)
                      =++.|.++-|.||.|||||||+-.++...+...|.+.|-
T Consensus        28 ~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G~I~~~   66 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR   66 (258)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             887997999988899889999999856788888739974


No 174
>PRK06893 DNA replication initiation factor; Validated
Probab=97.49  E-value=0.0005  Score=45.03  Aligned_cols=88  Identities=17%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHH-CCC---HHHEEE--EECCCHHHH
Q ss_conf             972688079997068723789999998752008987999973885--566889981-988---334489--725848999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKL-GVD---LKNLLI--SQPDTGEQA  133 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~-Gvd---~~~l~~--~~~~~~E~~  133 (363)
                      -..+ +...-|||+++||||.|+-.++..+...+..++|++.+..  ++|+..+.+ ..|   +|++-.  -++++-|..
T Consensus        35 ~~~~-~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~~~~~l~~l~~~d~l~iDDi~~i~g~~~~e~~l  113 (229)
T PRK06893         35 IDLK-QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAI  113 (229)
T ss_pred             CCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHCCEEEEECHHHHCCCHHHHHHH
T ss_conf             0246-987999899999889999999999997189859997377564069999876547979996723424883899999


Q ss_pred             HHHHHHHHHCCCCCEEEE
Q ss_conf             999999974489768998
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVI  151 (363)
Q Consensus       134 ~~i~~~li~~~~~~liVi  151 (363)
                      |+++..+..++. .++++
T Consensus       114 F~l~N~l~~~~~-~~ll~  130 (229)
T PRK06893        114 FDLFNRIKESGK-TLLLI  130 (229)
T ss_pred             HHHHHHHHHCCC-CEEEE
T ss_conf             999999997599-17998


No 175
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.48  E-value=0.0023  Score=40.80  Aligned_cols=53  Identities=30%  Similarity=0.434  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCC--CCHHHHHHHCC
Q ss_conf             726880799970687237899999987520-08987999973885--56688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHA--LDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~--~~~~~a~~~Gv  117 (363)
                      -++.|.|+-+.||.++||||+. .+++... ...|.+ +++.+..  ..+++..++|.
T Consensus        43 ~i~~Gei~gLlGpNGaGKSTll-k~l~Gl~~p~~G~I-~v~G~~~~~~~~~~~~~ig~   98 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTL-KILSGLLQPTSGEV-RVAGLVPWKRRKKFLRRIGV   98 (236)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEE-EECCEECCCCHHHHHHHEEE
T ss_conf             8848959999999983099999-99964948871599-99999851040988843799


No 176
>PRK11519 tyrosine kinase; Provisional
Probab=97.47  E-value=0.0095  Score=36.96  Aligned_cols=149  Identities=17%  Similarity=0.246  Sum_probs=83.1

Q ss_pred             HHHHHHCCCCCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC--------------
Q ss_conf             899972389726880799970-68723789999998752008987999973885566889981988--------------
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYG-PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------------  118 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G-~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd--------------  118 (363)
                      +|+..+. ++  .++++.|.. .|+-||||+|.+++..+...|..++.||+.-. .|...+.+|+.              
T Consensus       516 ~l~~~~~-~~--~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlR-rp~l~~~~~~~~~~GLs~~L~g~~~  591 (720)
T PRK11519        516 SLHFAMM-QA--QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR-KGYTHELLGTNNVNGLSEILIGQGD  591 (720)
T ss_pred             HHHHHCC-CC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-CCHHHHHCCCCCCCCHHHHCCCCCC
T ss_conf             9987446-88--876799970899997899999999999837991999938777-7016775399999985998079997


Q ss_pred             H---------HHEEEEE-----CCCHHH----HH-HHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHCC-----C
Q ss_conf             3---------3448972-----584899----99-999999744897689981433322-02655434555302-----2
Q gi|255764460|r  119 L---------KNLLISQ-----PDTGEQ----AL-EITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMGESLP-----G  173 (363)
Q Consensus       119 ~---------~~l~~~~-----~~~~E~----~~-~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~d~~~-----g  173 (363)
                      +         +++.+.+     |+..|-    .| ++++.| + ..+|+||||+-.-+. +=+-+-..+.|..+     |
T Consensus       592 ~~~~i~~~~~~~l~vl~~G~~~pnp~elL~s~~~~~ll~~l-~-~~yD~IIiDtpPv~~v~Da~~la~~aD~~l~Vvr~g  669 (720)
T PRK11519        592 ITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVAWA-S-KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYA  669 (720)
T ss_pred             HHHHCCCCCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHH-H-HHCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECC
T ss_conf             89970357989989976999994989983875999999999-8-529999993999652358999999789799999899


Q ss_pred             -HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf             -4788876776777764201781899986341145665
Q gi|255764460|r  174 -MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM  210 (363)
Q Consensus       174 -~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m  210 (363)
                       ...+....+++++...  ..++.-+++|++-.+.+..
T Consensus       670 ~t~~~~v~~a~~~l~~~--~~~v~G~VlN~v~~~~~~~  705 (720)
T PRK11519        670 VNTLKEVETSLSRFEQN--GIPVKGVILNSIFRRASAY  705 (720)
T ss_pred             CCCHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCC
T ss_conf             57899999999999968--9974899988976665656


No 177
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=97.46  E-value=0.0037  Score=39.54  Aligned_cols=123  Identities=20%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH----------HCCCHHHEEEEECCCHHHHHHH
Q ss_conf             807999706872378999999875200898799997388556688998----------1988334489725848999999
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK----------LGVDLKNLLISQPDTGEQALEI  136 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~----------~Gvd~~~l~~~~~~~~E~~~~i  136 (363)
                      +.++-|||+-++|||+|..+++.+....+..++|+|.-.+...+.+..          ++-.........+......++.
T Consensus        20 ~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~   99 (223)
T pfam01637        20 YPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGIAKSKLAFLSLTL   99 (223)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             71899986887879999999998633468528999514443799999888889999998765123322211207889999


Q ss_pred             HHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             99997-448976899814333220265543455530224788876776777764201781899986
Q gi|255764460|r  137 TDMLV-RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN  201 (363)
Q Consensus       137 ~~~li-~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iN  201 (363)
                      +...+ +.+...+||+|=+.-+....            ....+++.+.+.+-......++.+||+-
T Consensus       100 ~~~~l~~~~~~~iiviDEfq~l~~~~------------~~~~~~~~l~~~~d~~~~~~~~~~I~~G  153 (223)
T pfam01637       100 LFELLKRKGKKIAIIIDEVQYAIGLN------------GAESYVKLLLNLIDYPPKEYHLIVVLCG  153 (223)
T ss_pred             HHHHHHHCCCCEEEEEECHHHHHHCC------------CCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             99999855996599970167764024------------4305999999999975245775899972


No 178
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors.  The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan.  The pigment precursors are encoded by the white, brown, and scarlet genes, respectively.  Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan.  However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes.  Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in 
Probab=97.46  E-value=0.002  Score=41.27  Aligned_cols=71  Identities=20%  Similarity=0.269  Sum_probs=39.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC---EEEEEECCCCCCH-HHHHHHCCCHHHEEEEECCCHHHHH
Q ss_conf             97268807999706872378999999875200898---7999973885566-8899819883344897258489999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDS-IYARKLGVDLKNLLISQPDTGEQAL  134 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~---~~~~iD~E~~~~~-~~a~~~Gvd~~~l~~~~~~~~E~~~  134 (363)
                      .-+++|.++-|.||.+||||||. .+++...+.++   --+++|... .++ .+.+++|.-+.+-.+...-|++|-+
T Consensus        28 ~~i~~Ge~~~ilGpnGsGKSTLl-~~i~G~~~~~~~~~G~I~~~g~~-~~~~~~~~~igyv~Q~~~l~~~lTv~e~l  102 (226)
T cd03234          28 LHVESGQVMAILGSSGSGKTTLL-DAISGRVEGGGTTSGQILFNGQP-RKPDQFQKCVAYVRQDDILLPGLTVRETL  102 (226)
T ss_pred             EEEECCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCCEEEEEECCEE-CCHHHHHHCEEEECCCCCCCCCCCHHHHH
T ss_conf             89918809999989996099999-99967897898414599999999-98789750189991667567898899999


No 179
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.46  E-value=0.0023  Score=40.82  Aligned_cols=54  Identities=31%  Similarity=0.595  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCC--C-CHHHHHHHCCC
Q ss_conf             7268807999706872378999999875200-8987999973885--5-66889981988
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHA--L-DSIYARKLGVD  118 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~~--~-~~~~a~~~Gvd  118 (363)
                      =++.|.++-|.||.+||||||. .+++...+ ..|. +|+|.+.-  + ..+.++++|+-
T Consensus        29 ~I~~Ge~~~iiGpNGaGKSTLl-k~i~Gll~p~~G~-I~l~g~~i~~~~~~~~~~~ig~v   86 (265)
T PRK10253         29 EIPDGHFTAIIGPNGCGKSTLL-RTLSRLMTPAHGH-VWLDGEHIQHYASKEVARRIGLL   86 (265)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEE-EEECCEECCCCCHHHHHHHEEEE
T ss_conf             9859979999999883999999-9997498888529-99999995748978987655576


No 180
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.46  E-value=0.0036  Score=39.64  Aligned_cols=41  Identities=22%  Similarity=0.392  Sum_probs=30.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             726880799970687237899999987520089879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      =+..|.++-|.||.|||||||+ .+++...+...--++++.+
T Consensus        31 ~i~~GE~v~iiG~sGsGKSTLl-~~i~Gl~~p~~G~I~~~g~   71 (233)
T PRK11629         31 SIGEGEMMAIVGSSGSGKSTLL-HLLGGLDTPTSGDVIFNGQ   71 (233)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf             9889989999999994099999-9996699998639999999


No 181
>PRK08903 hypothetical protein; Validated
Probab=97.45  E-value=0.00085  Score=43.59  Aligned_cols=90  Identities=13%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHHHHHC-CCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566-8899819-883344897258489999999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-IYARKLG-VDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-~~a~~~G-vd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
                      +-+.++..-|||+.|+|||.|+.-++..+...+..+.|++.+..... +.+++.. +-+|.+-......-+..|++++.+
T Consensus        38 ~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~d~l~iDDi~~i~~~~q~~lF~l~N~~  117 (227)
T PRK08903         38 GPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLLAFDFDPRAELYAVDDVERLDDAQQIALFNLFNRV  117 (227)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             38878669998999998889999999999806997499651104577742001898999641148956999999999999


Q ss_pred             HHCCCCCEEEEE
Q ss_conf             744897689981
Q gi|255764460|r  141 VRSGAVDIIVID  152 (363)
Q Consensus       141 i~~~~~~liViD  152 (363)
                      ..++..-+++-+
T Consensus       118 ~~~~~~~ll~s~  129 (227)
T PRK08903        118 RAHGKTALLVAG  129 (227)
T ss_pred             HHCCCCEEEECC
T ss_conf             972994899718


No 182
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45  E-value=0.0031  Score=40.02  Aligned_cols=117  Identities=21%  Similarity=0.358  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-C-HHHHHHHCCCHHHEEEEECCCHHH-HHHHHHH
Q ss_conf             726880799970687237899999987520089879999738855-6-688998198833448972584899-9999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-D-SIYARKLGVDLKNLLISQPDTGEQ-ALEITDM  139 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~-~-~~~a~~~Gvd~~~l~~~~~~~~E~-~~~i~~~  139 (363)
                      -++.|.++-|.||.+||||||.-.++.......|.+.|-..+-+- + .++.+.+|.      +.|-.-+|. -+.++..
T Consensus        21 ~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~------v~QLSgGqkqrv~iA~a   94 (157)
T cd00267          21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY------VPQLSGGQRQRVALARA   94 (157)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCC------CCCCCHHHHHHHHHHHH
T ss_conf             987997999987889998999999958847996289999999997999999940608------76688699999999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             97448976899814333220265543455530224788876776777764201781899986341
Q gi|255764460|r  140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       140 li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                      |+..  .+++++|=..+-     +|-.       ...++ -..++++    .+.+.++|++.|-.
T Consensus        95 l~~~--p~ililDEPtsg-----LD~~-------~~~~l-~~~i~~l----~~~g~tii~vtH~~  140 (157)
T cd00267          95 LLLN--PDLLLLDEPTSG-----LDPA-------SRERL-LELLREL----AEEGRTVIIVTHDP  140 (157)
T ss_pred             HHCC--CCEEEEECCCCC-----CCHH-------HHHHH-HHHHHHH----HHCCCEEEEEECCH
T ss_conf             9709--999999698766-----8999-------99999-9999999----96899999990899


No 183
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.45  E-value=0.0014  Score=42.14  Aligned_cols=99  Identities=25%  Similarity=0.355  Sum_probs=65.3

Q ss_pred             CHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCH-----HHHHHHCCCHHHEEE
Q ss_conf             2789997238972688079997068723789999998752008--987999973885566-----889981988334489
Q gi|255764460|r   52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDS-----IYARKLGVDLKNLLI  124 (363)
Q Consensus        52 ~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~--g~~~~~iD~E~~~~~-----~~a~~~Gvd~~~l~~  124 (363)
                      ...|..++- |+.|..  .-|||++|+|||+.+..++.+.+..  +..++||++..--.|     ..+..+|        
T Consensus        30 ~~~l~~~~~-~~~p~n--~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~--------   98 (366)
T COG1474          30 ASFLAPALR-GERPSN--IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG--------   98 (366)
T ss_pred             HHHHHHHHC-CCCCCC--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC--------
T ss_conf             999999855-899860--799889998732899999999973315675799951307878799999999826--------


Q ss_pred             EECCC---HHHHHHHHHH-HHHCCCCCEEEEECCCCCCCHH
Q ss_conf             72584---8999999999-9744897689981433322026
Q gi|255764460|r  125 SQPDT---GEQALEITDM-LVRSGAVDIIVIDSVAALTPRA  161 (363)
Q Consensus       125 ~~~~~---~E~~~~i~~~-li~~~~~~liViDSi~al~p~~  161 (363)
                      -.|.+   .-+.++.+.. +-..+..-+||+|=+..|..+.
T Consensus        99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~  139 (366)
T COG1474          99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD  139 (366)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCC
T ss_conf             89976763268999999977741875999976476541546


No 184
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=97.45  E-value=0.0051  Score=38.67  Aligned_cols=162  Identities=23%  Similarity=0.348  Sum_probs=97.7

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHH---HHHHC-CCH
Q ss_conf             501477278999723897268807999706872378999999875200898799997388556--688---99819-883
Q gi|255764460|r   46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIY---ARKLG-VDL  119 (363)
Q Consensus        46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~---a~~~G-vd~  119 (363)
                      +.+-||..++|.++.+|   +|.=-.|-|.-.+|||++|+.++-|--..|-+|+|+---..-+  ...   ++.-| +|-
T Consensus       144 ePlqTGikaIDamiPIG---RGQRELIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAm~y  220 (504)
T COG0056         144 EPLQTGIKAIDALIPIG---RGQRELIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDY  220 (504)
T ss_pred             CHHHHHHHHHHHHCCCC---CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             33442057776405657---883378751576783110278898355689479999815437789999999997597513


Q ss_pred             HHEEEEEC-CC-HHH------HHHHHHHHHHCCCCCEEEEECCCCCCC-HHHH----HHHHH-HHCCC----HHHHHHHH
Q ss_conf             34489725-84-899------999999997448976899814333220-2655----43455-53022----47888767
Q gi|255764460|r  120 KNLLISQP-DT-GEQ------ALEITDMLVRSGAVDIIVIDSVAALTP-RAEI----EGDMG-ESLPG----MQARLMSQ  181 (363)
Q Consensus       120 ~~l~~~~~-~~-~E~------~~~i~~~li~~~~~~liViDSi~al~p-~~Ei----e~~~~-d~~~g----~~ar~ms~  181 (363)
                      .-++.+.. ++ ..|      ...+++.+...|.--|||+|-++-..- =.|+    ...-| ++.+|    +++||+-+
T Consensus       221 TiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLER  300 (504)
T COG0056         221 TIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLER  300 (504)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHH
T ss_conf             39998147762355553022555889999865974899960741889999999998369998657888640011799999


Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf             76777764201781899986341145665
Q gi|255764460|r  182 ALRKLTSSISRSKCILVFINQMRMKIGVM  210 (363)
Q Consensus       182 ~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m  210 (363)
                      +.|.--..=+.+=|++=+|--+-.++.++
T Consensus       301 Aakl~~e~g~GSiTALPIIETqagDvSAy  329 (504)
T COG0056         301 AAKLSDELGGGSITALPIIETQAGDVSAY  329 (504)
T ss_pred             HHHHCCCCCCCCEEEEEEEEECCCCEEEE
T ss_conf             88620245887247511688616866234


No 185
>PRK05642 DNA replication initiation factor; Validated
Probab=97.45  E-value=0.0011  Score=42.85  Aligned_cols=89  Identities=15%  Similarity=0.314  Sum_probs=58.0

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC--CHHHHHHH-CCC---HHHEE--EEECCCHHH
Q ss_conf             89726880799970687237899999987520089879999738855--66889981-988---33448--972584899
Q gi|255764460|r   61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL--DSIYARKL-GVD---LKNLL--ISQPDTGEQ  132 (363)
Q Consensus        61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~--~~~~a~~~-Gvd---~~~l~--~~~~~~~E~  132 (363)
                      .+|.+.. ..-|||++|+|||.|+..++..++..+..++|++.+...  .|+..+.+ ..|   +|++-  .-++++-|.
T Consensus        40 ~~~~~~~-~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~l~~~d~l~IDDi~~i~g~~~~e~~  118 (234)
T PRK05642         40 DAGWTES-LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCIDDLDVIAGKADWEEA  118 (234)
T ss_pred             CCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEECHHHHCCCHHHHHH
T ss_conf             6787788-389988999988999999999998079967997899987544999862422798989364554688599999


Q ss_pred             HHHHHHHHHHCCCCCEEEE
Q ss_conf             9999999974489768998
Q gi|255764460|r  133 ALEITDMLVRSGAVDIIVI  151 (363)
Q Consensus       133 ~~~i~~~li~~~~~~liVi  151 (363)
                      .|++++.+..++. .+++-
T Consensus       119 lF~l~N~~~~~~~-~llit  136 (234)
T PRK05642        119 LFHLFNRLRDSGR-RLLLA  136 (234)
T ss_pred             HHHHHHHHHHCCC-EEEEE
T ss_conf             9999999998399-59995


No 186
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.44  E-value=0.0035  Score=39.72  Aligned_cols=34  Identities=29%  Similarity=0.534  Sum_probs=27.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             7268807999706872378999999875200898
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG   96 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~   96 (363)
                      -++.|.++-|.|++||||||+++.++.-....+|
T Consensus        38 ~v~~GE~vaLvGeSGSGKSTl~~~l~gll~~~~g   71 (623)
T PRK10261         38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGG   71 (623)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             9889989999989997899999999779878885


No 187
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.44  E-value=0.0016  Score=41.89  Aligned_cols=89  Identities=26%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEE--EEECCCCCCHHHHHH-HCCCHHHEEEEECC-----CHHHHHHHHHH
Q ss_conf             07999706872378999999875200898799--997388556688998-19883344897258-----48999999999
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAEHALDSIYARK-LGVDLKNLLISQPD-----TGEQALEITDM  139 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~--~iD~E~~~~~~~a~~-~Gvd~~~l~~~~~~-----~~E~~~~i~~~  139 (363)
                      +.+-+.||+|||||+|-.+++...++. ...+  -.|..-..|.+++.+ .|.   +++-+..-     -..-.++.++.
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~---~i~~v~TG~~CH~da~m~~~ai~~   89 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGE---PIIGVETGKGCHLDASMNLEAIEE   89 (202)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHCCCC---EEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             899961799867899999999999752-7768996404006559999737798---068740387658867889999999


Q ss_pred             HHHCCC-CCEEEEECCCCCCCH
Q ss_conf             974489-768998143332202
Q gi|255764460|r  140 LVRSGA-VDIIVIDSVAALTPR  160 (363)
Q Consensus       140 li~~~~-~~liViDSi~al~p~  160 (363)
                      |..... .|+++|-|+++|+-.
T Consensus        90 l~~~~~~~Dll~iEs~GNL~~~  111 (202)
T COG0378          90 LVLDFPDLDLLFIESVGNLVCP  111 (202)
T ss_pred             HHHCCCCCCEEEEECCCCEECC
T ss_conf             8631776778999237643244


No 188
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43  E-value=0.0015  Score=42.10  Aligned_cols=83  Identities=22%  Similarity=0.322  Sum_probs=56.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHH----HHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHH
Q ss_conf             88079997068723789999998752----008987999973885566-------8899819883344897258489999
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQS----QKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQAL  134 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~----qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~  134 (363)
                      .++++.+.||.|+||||.+..++|..    .+.+..+++|.+. +++.       .||+-+||.+.   ++  .+.++.-
T Consensus       173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~D-tyRigAveQLktya~il~vp~~---v~--~~~~dl~  246 (388)
T PRK12723        173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK---AI--ESFKDLK  246 (388)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHCCCEE---EE--CCHHHHH
T ss_conf             7628999899887578799999999998626767737999807-8758899999999999788069---85--7889999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             99999974489768998143332
Q gi|255764460|r  135 EITDMLVRSGAVDIIVIDSVAAL  157 (363)
Q Consensus       135 ~i~~~li~~~~~~liViDSi~al  157 (363)
                      .   .+-+....|+|+||..+-.
T Consensus       247 ~---~l~~~~~~D~IlIDTAGrs  266 (388)
T PRK12723        247 E---EITQSKDFDLVLIDTIGKS  266 (388)
T ss_pred             H---HHHHHCCCCEEEEECCCCC
T ss_conf             9---9997249999999589988


No 189
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.43  E-value=0.0006  Score=44.55  Aligned_cols=102  Identities=25%  Similarity=0.232  Sum_probs=59.5

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEE-ECCCC-CCHHHHHHHCCCHHHEEEEE
Q ss_conf             72789997238972688079997068723789999998752008--9879999-73885-56688998198833448972
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFV-DAEHA-LDSIYARKLGVDLKNLLISQ  126 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~--g~~~~~i-D~E~~-~~~~~a~~~Gvd~~~l~~~~  126 (363)
                      |...+|.++.   +-+|.=..|+|++++|||+|...++.+..+.  +..|+|. =.|.. =-.++.+.+.   ..+++.+
T Consensus         3 ~~r~ID~l~p---igkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~~---~~vv~st   76 (249)
T cd01128           3 STRVVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK---GEVIAST   76 (249)
T ss_pred             CCEEEEEECC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHC---EEEEEEC
T ss_conf             4101543246---167867788789998899999999999998589849999997165799999999716---1699956


Q ss_pred             CC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             58--------489999999999744897689981433322
Q gi|255764460|r  127 PD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       127 ~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      .|        .+.-++.+++.+...|.--|+++||+.-+.
T Consensus        77 ~d~~p~~r~~~a~~a~~iAEyfr~~G~dVLl~~DslTR~A  116 (249)
T cd01128          77 FDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA  116 (249)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf             9999899999999999999999987997799951488999


No 190
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43  E-value=0.0015  Score=42.07  Aligned_cols=87  Identities=24%  Similarity=0.428  Sum_probs=57.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCC-EEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHH
Q ss_conf             26880799970687237899999987520-0898-7999973885566-------8899819883344897258489999
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGG-TCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQAL  134 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~-~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~  134 (363)
                      +..|+++-+.||+|+||||....++|.+. +.|. .|.+|.+. ++.-       .|++-+||-     +...++.++.-
T Consensus       173 ~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~D-TYRIgAvEQLktYa~IlgvP-----v~vv~~~~eL~  246 (404)
T PRK06995        173 MERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVP-----VHAVKDAADLR  246 (404)
T ss_pred             HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCE-----EEEECCHHHHH
T ss_conf             1147558986688876375899999999998389837999768-75478999999999875955-----99959999999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf             99999974489768998143332202
Q gi|255764460|r  135 EITDMLVRSGAVDIIVIDSVAALTPR  160 (363)
Q Consensus       135 ~i~~~li~~~~~~liViDSi~al~p~  160 (363)
                      ..+..+   ...|+|+||..+ ..|+
T Consensus       247 ~aL~~l---~~~dlILIDTaG-rs~r  268 (404)
T PRK06995        247 LALAEL---RNKHIVLIDTVG-MSQR  268 (404)
T ss_pred             HHHHHH---CCCCEEEEECCC-CCCC
T ss_conf             999970---899999980999-8976


No 191
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.42  E-value=0.0028  Score=40.28  Aligned_cols=40  Identities=33%  Similarity=0.566  Sum_probs=29.4

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             72789997238972688079997068723789999998752008
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT   94 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~   94 (363)
                      |...||.-|.   +|.|.++-++||++||||||. .+++...+.
T Consensus        11 g~f~ldv~l~---i~~g~i~~l~GpsGaGKTTLl-~~iaGl~~p   50 (352)
T PRK11144         11 GQLCLTVNLT---LPAQGITAIFGRSGAGKTSLI-NLISGLTRP   50 (352)
T ss_pred             CCEEEEEEEE---ECCCCEEEEECCCCCHHHHHH-HHHHCCCCC
T ss_conf             9999999999---889989999999996299999-999768999


No 192
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.42  E-value=0.0018  Score=41.58  Aligned_cols=71  Identities=24%  Similarity=0.318  Sum_probs=41.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCC-CH-HHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf             726880799970687237899999987520-089879999738855-66-88998198833448972584899999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHAL-DS-IYARKLGVDLKNLLISQPDTGEQALE  135 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~-~~-~~a~~~Gvd~~~l~~~~~~~~E~~~~  135 (363)
                      -++.|.++-+.||.+|||||+. .+++... ...|.+. ||.+... +| ++.+.+|+-++...+.+--|+.+.+.
T Consensus        27 ~i~~Gei~gllG~NGaGKSTll-k~i~Gl~~p~~G~i~-i~G~d~~~~~~~~r~~ig~~~q~~~l~~~ltv~e~l~  100 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTTL-RMLAGLLEPDAGFAT-VDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLE  100 (218)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEE-ECCEECCCCHHHHHCCEEEECCCCCCCCCCCHHHHHH
T ss_conf             9859829999999998499999-999779778974899-9999988697989628799807766799998999999


No 193
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.42  E-value=0.0054  Score=38.52  Aligned_cols=110  Identities=19%  Similarity=0.325  Sum_probs=74.0

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHHHHHHH
Q ss_conf             8079997068723789999998752008987999973885566-------889981988334489725848999999999
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQALEITDM  139 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~  139 (363)
                      --++.+.|..++||||..-.++.-.+++|..|+. -+-.+|+.       .|++++|++.=.-- .-.|.+--+++.++.
T Consensus       139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll-aA~DTFRAaAiEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~  216 (340)
T COG0552         139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL-AAGDTFRAAAIEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQA  216 (340)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHHHHHHCCEEECCC-CCCCCHHHHHHHHHH
T ss_conf             6799999348886371799999999978986999-82334789999999999999599278259-999808999999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             97448976899814333220265543455530224788876776777764201781
Q gi|255764460|r  140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC  195 (363)
Q Consensus       140 li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~  195 (363)
                      .. ...+|++++|-.+-|-.+.               .||. -|+|+...+.+...
T Consensus       217 Ak-ar~~DvvliDTAGRLhnk~---------------nLM~-EL~KI~rV~~k~~~  255 (340)
T COG0552         217 AK-ARGIDVVLIDTAGRLHNKK---------------NLMD-ELKKIVRVIKKDDP  255 (340)
T ss_pred             HH-HCCCCEEEEECCCCCCCCH---------------HHHH-HHHHHHHHHCCCCC
T ss_conf             99-7699999996755445736---------------6899-99999998464568


No 194
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=97.41  E-value=0.00052  Score=44.93  Aligned_cols=108  Identities=28%  Similarity=0.365  Sum_probs=55.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf             99970687237899999987520089879999738855668899819883344897258489999999999744897689
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII  149 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~li  149 (363)
                      +.+||||+||||++|-.++....   ...+.++.-.-. ..|.   |        ..+....+.++.    .+.....++
T Consensus         1 iLl~GppGtGKT~~a~~la~~~~---~~~~~v~~~~~~-~~~~---g--------~~~~~i~~~f~~----a~~~~p~Il   61 (131)
T pfam00004         1 LLLYGPPGTGKTTLAKAVAKELG---APFIEISGSELV-SKYV---G--------ESEKRLRELFEA----AKKLAPCVI   61 (131)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC---CCCEECCCCCCC-CCCC---C--------HHHHHHHHHHHH----HHHCCCCEE
T ss_conf             98789999999999999999978---985332420122-2334---5--------068889999999----997499189


Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCCEEEE-EEC
Q ss_conf             9814333220265543455530224788876776777764201-7818999-863
Q gi|255764460|r  150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR-SKCILVF-INQ  202 (363)
Q Consensus       150 ViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k-~~~~~i~-iNQ  202 (363)
                      ++|-+.++.++.+-...      ....+.++.++..+...... .++.+|+ +|.
T Consensus        62 ~iDe~d~l~~~~~~~~~------~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~  110 (131)
T pfam00004        62 FIDEIDALAGSRGSGGD------SESRRVVNQLLTELDGFTSSLSKVIVIAATNR  110 (131)
T ss_pred             EECHHHHHHCCCCCCCC------CCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf             83116777516788888------75132687899998502246887699997599


No 195
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.41  E-value=0.0062  Score=38.12  Aligned_cols=71  Identities=25%  Similarity=0.253  Sum_probs=41.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHHCC--CHHHEEEEECCCHHHHH
Q ss_conf             7268807999706872378999999875200898799997388--556688998198--83344897258489999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSIYARKLGV--DLKNLLISQPDTGEQAL  134 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~~~a~~~Gv--d~~~l~~~~~~~~E~~~  134 (363)
                      -++.|.++-+.||.++|||||. .++....+...-.++++.+.  .++|....+.|+  -+...-+++..|++|-+
T Consensus        22 ~v~~Gei~~liGpNGaGKSTL~-~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gig~v~Q~~~lf~~lTV~Enl   96 (230)
T TIGR03410        22 EVPKGEVTCVLGRNGVGKTTLL-KTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENL   96 (230)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCHHHHH
T ss_conf             9999979999999994099999-99977999995499999999999998999982959937774257678899999


No 196
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.41  E-value=0.0023  Score=40.80  Aligned_cols=114  Identities=24%  Similarity=0.280  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566889981988334489725848999999999974
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~  142 (363)
                      |++.-+.+.+||||+||||.+|-.++.   ..+...+-++.- .+...|.   |            ..|..+..+-...+
T Consensus       272 ~~~~~~giLl~GpPGtGKT~lAkava~---~~~~~fi~v~~~-~l~sk~v---G------------esek~ir~~F~~A~  332 (494)
T COG0464         272 GLRPPKGVLLYGPPGTGKTLLAKAVAL---ESRSRFISVKGS-ELLSKWV---G------------ESEKNIRELFEKAR  332 (494)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHH---HCCCCEEEECCH-HHHHHHH---H------------HHHHHHHHHHHHHH
T ss_conf             898883699988999758999999875---449824884335-5540776---5------------99999999999999


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             48976899814333220265543455530224788876776777764201781899986
Q gi|255764460|r  143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN  201 (363)
Q Consensus       143 ~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iN  201 (363)
                      ..+..+|++|.+.++.+..-...      -+...|+.++++.-+...-...++.+|...
T Consensus       333 ~~~p~iifiDEiDs~~~~r~~~~------~~~~~rv~~~ll~~~d~~e~~~~v~vi~aT  385 (494)
T COG0464         333 KLAPSIIFIDEIDSLASGRGPSE------DGSGRRVVGQLLTELDGIEKAEGVLVIAAT  385 (494)
T ss_pred             HCCCCEEEHHHHHHHHCCCCCCC------CCHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf             66998897488666741289987------637999999999997475443764899647


No 197
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.41  E-value=0.0059  Score=38.24  Aligned_cols=45  Identities=33%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             7268807999706872378999999875200898799997388556
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD  108 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~  108 (363)
                      -+..|.++-|.|+.|||||||+-.+..-.....|.+ ++|.....+
T Consensus        33 ~i~~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G~I-~i~G~~~~~   77 (281)
T PRK13633         33 EVKKGEFLVILGHNGSGKSTIAKHMNALLLPSEGKV-YVDGLDTSD   77 (281)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCC
T ss_conf             887998999999999849999999975887888569-999998788


No 198
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.40  E-value=0.0037  Score=39.51  Aligned_cols=42  Identities=33%  Similarity=0.506  Sum_probs=30.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -+|+|.++-|.||.+||||||+ .+++...+...--++++.++
T Consensus        30 ~i~~Gei~~iiGpnGsGKSTLl-k~i~Gl~~p~~G~I~~~G~~   71 (269)
T PRK11831         30 TVPRGKITAIMGPSGIGKTTLL-RLIGGQIAPDHGEILFDGEN   71 (269)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECCEE
T ss_conf             8879989999939997599999-99967988898669999988


No 199
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.40  E-value=0.0056  Score=38.41  Aligned_cols=38  Identities=34%  Similarity=0.444  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             72688079997068723789999998752008987999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      -++.|.++-|.|+.|||||||+-++..-.....|.+.+
T Consensus        29 ~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p~~G~I~~   66 (286)
T PRK13646         29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV   66 (286)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             98699899999999981999999997078888875999


No 200
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.40  E-value=0.0032  Score=39.91  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=63.2

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCH-----HHHHHHC-CCHHHEEEE
Q ss_conf             89997238972688079997068723789999998752008--987999973885566-----8899819-883344897
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDS-----IYARKLG-VDLKNLLIS  125 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~--g~~~~~iD~E~~~~~-----~~a~~~G-vd~~~l~~~  125 (363)
                      .|..++- |+.|.. +. |||+||+|||+.+-+++...+..  +-.++||++-..-+|     ..+++++ .+.-    .
T Consensus        45 ~l~~~l~-g~~~~n-~~-I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L~~~~~p----~  117 (394)
T PRK00411         45 ALRPALR-GSRPSN-VL-ILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSLFGHPPP----S  117 (394)
T ss_pred             HHHHHHC-CCCCCC-EE-EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC----C
T ss_conf             9999975-999984-79-988999989999999999999746896599996966898999999999995699898----7


Q ss_pred             ECCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCH
Q ss_conf             2584899999999997-4489768998143332202
Q gi|255764460|r  126 QPDTGEQALEITDMLV-RSGAVDIIVIDSVAALTPR  160 (363)
Q Consensus       126 ~~~~~E~~~~i~~~li-~~~~~~liViDSi~al~p~  160 (363)
                      +--+..+.++.+...+ +.+..-+||+|=+..|..+
T Consensus       118 ~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~  153 (394)
T PRK00411        118 SGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEK  153 (394)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf             787899999999998616697589999655402036


No 201
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.39  E-value=0.0036  Score=39.59  Aligned_cols=53  Identities=26%  Similarity=0.408  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCC--CCCHHH-HHHHCC
Q ss_conf             726880799970687237899999987520-0898799997388--556688-998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEH--ALDSIY-ARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~--~~~~~~-a~~~Gv  117 (363)
                      =++.|.++-|.||.|||||||. .+++... ...|.+ ++|.+.  .++|+. ..++|.
T Consensus        29 ~i~~Ge~~~i~G~sGsGKSTLl-k~i~gl~~p~~G~I-~~~g~~i~~~~~~~~r~~i~~   85 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLL-KIVASLISPTSGTL-LFEGEDISTLKPEIYRQQVSY   85 (225)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHCCE
T ss_conf             9859969999999999999999-99964668887659-999999774999999852745


No 202
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37  E-value=0.0048  Score=38.81  Aligned_cols=56  Identities=25%  Similarity=0.367  Sum_probs=36.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCHH-HHHHHCC
Q ss_conf             9726880799970687237899999987520089879999738-855668-8998198
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-HALDSI-YARKLGV  117 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E-~~~~~~-~a~~~Gv  117 (363)
                      =-++.|.++-|.||.|||||||+.++..-.....|.+.+-+.+ +..++. ...++|+
T Consensus        26 ~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G~I~i~G~~i~~~~~~~lr~~iG~   83 (273)
T PRK13647         26 LVIPEGSKTAILGPNGAGKSTLLLHLNGIYTAQRGRVKVMGKVVNEENIRWIRKKVGL   83 (273)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHCEE
T ss_conf             8988998999999999759999999966988886199999999996898999875248


No 203
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37  E-value=0.0036  Score=39.59  Aligned_cols=55  Identities=25%  Similarity=0.459  Sum_probs=36.0

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCH----HHHHHHCC
Q ss_conf             972688079997068723789999998752008987999973885-566----88998198
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-LDS----IYARKLGV  117 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~-~~~----~~a~~~Gv  117 (363)
                      =-++.|.++-|.||.+||||||+.++..-.....|.+ ++|.+.- .++    ++.+++|+
T Consensus        23 l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I-~v~G~~i~~~~~~~~~~r~~vg~   82 (275)
T PRK13639         23 FKAEEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSV-LIKGEPIKYDKKSLLNVRKTVGI   82 (275)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHHHHHHHCEE
T ss_conf             8998998999999999649999999973989996399-99999998880659999874159


No 204
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36  E-value=0.0033  Score=39.83  Aligned_cols=56  Identities=20%  Similarity=0.188  Sum_probs=34.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--CEEEEEECCCCCC---HHHHHHHCC
Q ss_conf             9726880799970687237899999987520089--8799997388556---688998198
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEHALD---SIYARKLGV  117 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g--~~~~~iD~E~~~~---~~~a~~~Gv  117 (363)
                      =-++.|.++-|.|+.|||||||+.++..-.....  .-.+++|....-.   .++.+++|+
T Consensus        29 l~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~~~G~i~~~g~~i~~~~~~~lr~~vg~   89 (283)
T PRK13640         29 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPKSKITVDGITLTAKTVWDIREKVGI   89 (283)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCHHHHHHCEEE
T ss_conf             6998999999999999879999999964037888861799999999996798899626189


No 205
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.36  E-value=0.0016  Score=41.77  Aligned_cols=40  Identities=28%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26880799970687237899999987520089879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|.++-|.||.+||||||. .+++...+...-.++++..
T Consensus        22 i~~GE~v~iiG~nGaGKSTLl-~~i~Gll~p~sG~I~i~G~   61 (233)
T PRK10771         22 VERGEQVAILGPSGAGKSTLL-NLIAGFLTPASGSLLINGV   61 (233)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf             889989999999998199999-9996599998559999999


No 206
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.36  E-value=0.0043  Score=39.14  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEE
Q ss_conf             2688079997068723789999998752008----98799997
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKT----GGTCAFVD  102 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~----g~~~~~iD  102 (363)
                      +..|.++-|.|+++|||||+++.++.-.-..    +|.+.|-.
T Consensus        32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g   74 (539)
T COG1123          32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG   74 (539)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf             6489589998689888899999985548887864441899878


No 207
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36  E-value=0.0025  Score=40.59  Aligned_cols=41  Identities=32%  Similarity=0.358  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             268807999706872378999999875200898799997388
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      ++.|.++-|.|+.|||||||+..++.-.....|.+ ++|.+.
T Consensus        30 i~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~~~G~I-~~~G~~   70 (277)
T PRK13642         30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGIV-KIDGER   70 (277)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEE
T ss_conf             88998999999999689999999963899888489-999999


No 208
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup.  This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.   ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35  E-value=0.002  Score=41.28  Aligned_cols=40  Identities=28%  Similarity=0.480  Sum_probs=30.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26880799970687237899999987520089879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|.++-|.||.+||||||. ++++...+...--++++.+
T Consensus        23 i~~Gei~~iiGpnGaGKSTl~-~~i~Gl~~p~~G~I~~~g~   62 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLL-RLIAGLERPDSGEILIDGR   62 (213)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf             889989999999997399999-9997599989708999999


No 209
>KOG0733 consensus
Probab=97.35  E-value=0.0026  Score=40.53  Aligned_cols=117  Identities=29%  Similarity=0.406  Sum_probs=79.8

Q ss_pred             HHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHH
Q ss_conf             97238972688079997068723789999998752008987999973885566889981988334489725848999999
Q gi|255764460|r   57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI  136 (363)
Q Consensus        57 ~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i  136 (363)
                      .+|| =--|.|  +.+||||+||||.|| ..+|+-.+.+    ||..-+   |+.+..+         +  ---|-+..-
T Consensus       538 k~lG-i~~PsG--vLL~GPPGCGKTLlA-KAVANEag~N----FisVKG---PELlNkY---------V--GESErAVR~  595 (802)
T KOG0733         538 KALG-IDAPSG--VLLCGPPGCGKTLLA-KAVANEAGAN----FISVKG---PELLNKY---------V--GESERAVRQ  595 (802)
T ss_pred             HHHC-CCCCCC--EEEECCCCCCHHHHH-HHHHHHCCCC----EEEECC---HHHHHHH---------H--HHHHHHHHH
T ss_conf             9828-889872--387579986188999-9985030475----476238---8999877---------4--237899999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EE
Q ss_conf             999974489768998143332202655434555302247888767767777642017818999-86
Q gi|255764460|r  137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF-IN  201 (363)
Q Consensus       137 ~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iN  201 (363)
                      +-+=.|..+.++|++|-+.||+|+..-++      ....+|+++++|--|-..-.+.++.+|. ||
T Consensus       596 vFqRAR~saPCVIFFDEiDaL~p~R~~~~------s~~s~RvvNqLLtElDGl~~R~gV~viaATN  655 (802)
T KOG0733         596 VFQRARASAPCVIFFDEIDALVPRRSDEG------SSVSSRVVNQLLTELDGLEERRGVYVIAATN  655 (802)
T ss_pred             HHHHHHCCCCEEEEECCHHHCCCCCCCCC------CHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf             99986238983898511120276557777------5058999999998731621114259995068


No 210
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.35  E-value=0.0017  Score=41.73  Aligned_cols=88  Identities=20%  Similarity=0.302  Sum_probs=55.2

Q ss_pred             CCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-----HHHHHHCCCHHHEEEEECCCHHHHH--
Q ss_conf             7268-8079997068723789999998752008987999973885566-----8899819883344897258489999--
Q gi|255764460|r   63 GFPK-GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-----IYARKLGVDLKNLLISQPDTGEQAL--  134 (363)
Q Consensus        63 G~p~-Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-----~~a~~~Gvd~~~l~~~~~~~~E~~~--  134 (363)
                      |+.. ..++.+.|+.|+||||++-.++.........++|+-. -.+++     ..+..+|++.+..     + ....+  
T Consensus        38 ~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~-~~l~~~~ll~~i~~~lg~~~~~~-----~-~~~~~~~  110 (269)
T TIGR03015        38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-TRVDAEDLLRMVAADFGLETEGR-----D-KAALLRE  110 (269)
T ss_pred             HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHHHHHHHCCCCCCCC-----C-HHHHHHH
T ss_conf             996489659997299898899999999845934548999769-99999999999999859898898-----9-9999999


Q ss_pred             --HHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             --99999974489768998143332
Q gi|255764460|r  135 --EITDMLVRSGAVDIIVIDSVAAL  157 (363)
Q Consensus       135 --~i~~~li~~~~~~liViDSi~al  157 (363)
                        +.+..+...|...++|||=.-.|
T Consensus       111 l~~~L~~~~~~g~~~vliIDEAq~L  135 (269)
T TIGR03015       111 LEDFLIEQFAAGKRALLVVDEAQNL  135 (269)
T ss_pred             HHHHHHHHHHCCCCEEEEEECHHHC
T ss_conf             9999999996699469997242219


No 211
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system.  Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond.  Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond.  Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35  E-value=0.0025  Score=40.59  Aligned_cols=43  Identities=21%  Similarity=0.415  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             72688079997068723789999998752008987999973885
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA  106 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~  106 (363)
                      -++.|.++-|.||.|||||||. .+++...+...--+++|.+.-
T Consensus        23 ~i~~Ge~~~iiGpsGsGKSTLl-~~i~gl~~p~~G~I~~~g~~i   65 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLL-RCLNGLVEPTSGSVLIDGTDI   65 (241)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEEC
T ss_conf             9999989999999983399999-999749999855999999998


No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.34  E-value=0.0028  Score=40.30  Aligned_cols=121  Identities=31%  Similarity=0.469  Sum_probs=72.4

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEE
Q ss_conf             14772789997238972688079997068723789999998752008987999973885566889981-98833448972
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQ  126 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~  126 (363)
                      +|---+.|=.-|| =-=|+|  +.+||||++|||.|| ..+|+-.    .+.|+-..+   |+.+.+. |          
T Consensus       224 lP~~hPe~f~~lG-iePPkG--~ll~GPPGtGktlla-ka~ane~----~a~f~~inG---Peimsky~G----------  282 (980)
T TIGR01243       224 LPLKHPELFEKLG-IEPPKG--VLLYGPPGTGKTLLA-KAVANEA----GAYFIAING---PEIMSKYYG----------  282 (980)
T ss_pred             CCCCCHHHHHHCC-CCCCCC--EEEECCCCCCHHHHH-HHHHHHC----CCEEEEECC---CHHHHHHCC----------
T ss_conf             3575647898618-899873--587558986178999-9987530----551788506---034433136----------


Q ss_pred             CCCHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             58489999-9999997448976899814333220265-5434555302247888767767777642017818999
Q gi|255764460|r  127 PDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAE-IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF  199 (363)
Q Consensus       127 ~~~~E~~~-~i~~~li~~~~~~liViDSi~al~p~~E-ie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~  199 (363)
                       + .|+.+ +|... ..+++..+|+||.+.|..|+.+ .-|+       ...|+.++.|..+-.+-.+-++.+|.
T Consensus       283 -e-~e~~lr~if~e-aeenaP~iifideidaiaPkr~e~~Ge-------ve~r~v~qlltlmdGlk~rG~v~viG  347 (980)
T TIGR01243       283 -E-SEERLREIFKE-AEENAPSIIFIDEIDAIAPKREEVTGE-------VEKRVVAQLLTLMDGLKGRGKVIVIG  347 (980)
T ss_pred             -C-CHHHHHHHHHH-HHHCCCCEEEEECHHHCCCCCCCHHHH-------HHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             -3-07899999986-530587078741211007641000016-------88999999999974002487289981


No 213
>PRK06820 type III secretion system ATPase; Validated
Probab=97.33  E-value=0.0004  Score=45.64  Aligned_cols=118  Identities=17%  Similarity=0.243  Sum_probs=68.4

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCC-HHHHHHH-CC-CHH
Q ss_conf             550147727899972389726880799970687237899999987520089879999-7388556-6889981-98-833
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALD-SIYARKL-GV-DLK  120 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~-~~~a~~~-Gv-d~~  120 (363)
                      -+.+.||+.++|.++.   +-+|.=.-|+|..++|||+|+..++.+++ .+ .++|. =.|..-. .++.+.+ +- .++
T Consensus       144 ~~pL~TGIraID~l~p---igrGQR~gIfgg~GvGKT~Ll~~i~~~~~-ad-v~V~~~IGeRgrEv~efie~~~~~~~~~  218 (445)
T PRK06820        144 EQMLTTGIRAIDGILS---CGEGQRIGIFAAAGVGKSTLLSMLCADSA-AD-VMVLALIGERGREVREFLEQVLTPEARA  218 (445)
T ss_pred             CCCCCCCCEEEECCCC---CCCCCCCEEECCCCCCCCHHHHHHHHHCC-CC-EEEEEEEEEECHHHHHHHHHHHCCCCCC
T ss_conf             8511268546625677---44787421106899981223445653067-88-7999987441289999999864237611


Q ss_pred             HEE--EEECCC--HHH------HHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHH
Q ss_conf             448--972584--899------99999999744897689981433322-026554345
Q gi|255764460|r  121 NLL--ISQPDT--GEQ------ALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDM  167 (363)
Q Consensus       121 ~l~--~~~~~~--~E~------~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~  167 (363)
                      +.+  +.+.|.  .+.      ++.++|.+-..|.--|+++||+.... ...|+--.+
T Consensus       219 rtvvV~atsd~p~~~R~~a~~~a~aiAEyfrd~Gk~VLli~DslTr~A~A~REisl~~  276 (445)
T PRK06820        219 RTVVVVATSDRPALERLKGLSTATTVAEYFRERGLKVLLLADSLTRYARAAREIGLAA  276 (445)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             0699941676898999999876114889998679848998446578888998999864


No 214
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D.  PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33  E-value=0.0025  Score=40.62  Aligned_cols=42  Identities=29%  Similarity=0.462  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             2688079997068723789999998752008987999973885
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA  106 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~  106 (363)
                      ++.|.++-|.||++|||||| |.+++...+...--+++|.+.-
T Consensus        23 v~~Ge~~~iiGpSGsGKSTl-lr~i~Gl~~p~~G~I~~~g~~v   64 (232)
T cd03300          23 IKEGEFFTLLGPSGCGKTTL-LRLIAGFETPTSGEILLDGKDI   64 (232)
T ss_pred             ECCCCEEEEECCCCCHHHHH-HHHHHCCCCCCCEEEEECCEEC
T ss_conf             87998999999999839999-9999779999853999999999


No 215
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.32  E-value=0.0033  Score=39.82  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=29.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCC
Q ss_conf             72688079997068723789999998752008---98799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~---g~~~~~iD~E~  105 (363)
                      =+..|.++-|.|++||||||++..++.-....   .|.+ +++.+.
T Consensus        38 ~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~~~sG~I-~~~G~~   82 (330)
T PRK09473         38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA-TFNGRE   82 (330)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE-EECCEE
T ss_conf             888998999986898779999999976888888335899-999998


No 216
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.32  E-value=0.0023  Score=40.82  Aligned_cols=54  Identities=20%  Similarity=0.341  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC
Q ss_conf             7268807999706872378999999875200898799997388556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gv  117 (363)
                      =++.|.++-|.||.+||||||+-.++.-.....|.+ +++.+..-..++.+.+|.
T Consensus        22 ~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~I-~~~g~~~~~~~~~~~ig~   75 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSIGY   75 (205)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCHHHHHCCEEE
T ss_conf             886998999988999989999999956857778738-999999965787444899


No 217
>PTZ00243 ABC transporter; Provisional
Probab=97.32  E-value=0.0038  Score=39.47  Aligned_cols=122  Identities=20%  Similarity=0.340  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE------EEEEECC---------------CCCCHHH----HHHHCCC
Q ss_conf             2688079997068723789999998752008987------9999738---------------8556688----9981988
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT------CAFVDAE---------------HALDSIY----ARKLGVD  118 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~------~~~iD~E---------------~~~~~~~----a~~~Gvd  118 (363)
                      +|+|.++-|.|+-|||||+|...++.+.....|.      ++|..=+               ..+|+++    .+.+.++
T Consensus       683 v~~G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~Q~pWi~n~TiReNILFg~~~d~~rY~~Vi~aCaL~  762 (1560)
T PTZ00243        683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLE  762 (1560)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCH
T ss_conf             65997899989999879999999968884356389974708975784440587399981088610499999999996788


Q ss_pred             HH--HEEE-EECC--------CHH--HHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             33--4489-7258--------489--999999999744897689981-43332202655434555302247888767767
Q gi|255764460|r  119 LK--NLLI-SQPD--------TGE--QALEITDMLVRSGAVDIIVID-SVAALTPRAEIEGDMGESLPGMQARLMSQALR  184 (363)
Q Consensus       119 ~~--~l~~-~~~~--------~~E--~~~~i~~~li~~~~~~liViD-Si~al~p~~Eie~~~~d~~~g~~ar~ms~~lr  184 (363)
                      .|  .|-- -+..        ++-  |-+.++..+.+.  -|+.++| -++|+           |++++.  +++.+.++
T Consensus       763 ~Dl~~LP~GD~TeIGErGinLSGGQKQRIALARAvYsd--adIyLLDDpLSAL-----------DahV~~--~If~~~I~  827 (1560)
T PTZ00243        763 ADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYAN--RDVYLLDDPLSAL-----------DAHVGE--RVVEECFL  827 (1560)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEECCCCCCC-----------CHHHHH--HHHHHHHH
T ss_conf             88985689776630567635771378999999987426--7757522854334-----------567799--99999988


Q ss_pred             HHHHHHCCCCCEEEEEECCC
Q ss_conf             77764201781899986341
Q gi|255764460|r  185 KLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       185 kl~~~~~k~~~~~i~iNQ~r  204 (363)
                      .+    -+.+|.++++||+.
T Consensus       828 g~----LkgKT~ILVTH~ls  843 (1560)
T PTZ00243        828 GA----LAGKTRVLATHQVH  843 (1560)
T ss_pred             HH----HCCCEEEEEECCHH
T ss_conf             88----67996999968574


No 218
>cd03299 ABC_ModC_like Archeal protein closely related to ModC.  ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31  E-value=0.0029  Score=40.25  Aligned_cols=42  Identities=29%  Similarity=0.405  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||++||||||. .+++...+...-.+++|.+.
T Consensus        21 ~v~~Ge~~~iiGpSGsGKSTLl-r~i~Gl~~p~~G~I~~~G~d   62 (235)
T cd03299          21 EVERGDYFVILGPTGSGKSVLL-ETIAGFIKPDSGKILLNGKD   62 (235)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9889989999999963599999-99974999996599999999


No 219
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.31  E-value=0.0065  Score=37.99  Aligned_cols=75  Identities=27%  Similarity=0.382  Sum_probs=46.2

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECC--CCCCHH-HHHHHCCC-----------HHHEEEEE
Q ss_conf             97268807999706872378999999875-20089879999738--855668-89981988-----------33448972
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAE--HALDSI-YARKLGVD-----------LKNLLISQ  126 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E--~~~~~~-~a~~~Gvd-----------~~~l~~~~  126 (363)
                      =-+|+|..+-|.|+++||||||+ .+++. .+...|. +++|..  ..++++ +.+.+|+=           .+|+....
T Consensus       486 l~i~~Ge~vaIvG~sGsGKSTL~-kll~Gl~~p~~G~-i~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~  563 (694)
T TIGR03375       486 LTIRPGEKVAIIGRIGSGKSTLL-KLLLGLYQPTEGS-VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA  563 (694)
T ss_pred             HEECCCCEEEEEECCCCCHHHHH-HHHCCCCCCCCCE-EEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCC
T ss_conf             18879978999805898788999-9855675899887-998985425499999973021357677110746999984169


Q ss_pred             CC-CHHHHHHHHH
Q ss_conf             58-4899999999
Q gi|255764460|r  127 PD-TGEQALEITD  138 (363)
Q Consensus       127 ~~-~~E~~~~i~~  138 (363)
                      |+ +-|++.+.++
T Consensus       564 ~~~~~~~i~~a~~  576 (694)
T TIGR03375       564 PYADDEEILRAAE  576 (694)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9999999999999


No 220
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.30  E-value=0.0051  Score=38.66  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             9999999997448976899814333220265543455530224788876776777764201781899986341
Q gi|255764460|r  132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       132 ~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                      |-+.|+-.|..  ..+++|.|=-++     -+|-       ..++.+    +..+.....+.++++|||.|-.
T Consensus       175 QRV~IA~ALa~--~P~lLIlDEPTs-----~LD~-------~~~~~i----l~ll~~L~~e~g~tvl~ItHdl  229 (623)
T PRK10261        175 QRVMIAMALSC--RPAVLIADEPTT-----ALDV-------TIQAQI----LQLIKVLQKEMSMGVIFITHDM  229 (623)
T ss_pred             HHHHHHHHHHC--CCCEEEECCCCC-----CCCH-------HHHHHH----HHHHHHHHHHHCCCCEEECCCH
T ss_conf             99999998741--886588557743-----4368-------999999----9999999887523520553778


No 221
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29  E-value=0.0014  Score=42.31  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=58.2

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf             9726880799970687237899999987520-08987999973885566-------889981988334489725848999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQA  133 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~  133 (363)
                      +|-...+++-+.||.|.||||....++|.+- +.|..+++|.+. +++-       -|++-+||-+.   +  ..+.++.
T Consensus       218 ~~~~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~D-TYRIgAvEQLktYa~Il~iPv~---v--v~~~~el  291 (432)
T PRK12724        218 TGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAAIEQLKRYADTMGMPFY---P--VKDIKKF  291 (432)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHHHHHHHHHCCCEE---E--EECHHHH
T ss_conf             57777629999899998889999999999999749927999526-6537799999999998599459---9--5189999


Q ss_pred             HHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9999999744897689981433
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       134 ~~i~~~li~~~~~~liViDSi~  155 (363)
                      -+   .|.+ ...|+|.||..+
T Consensus       292 ~~---al~~-~~~DlILIDTAG  309 (432)
T PRK12724        292 KE---TLAR-DGSELILIDTAG  309 (432)
T ss_pred             HH---HHHH-CCCCEEEEECCC
T ss_conf             99---9985-699999992999


No 222
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.29  E-value=0.0024  Score=40.78  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             972688079997068723789999998752008987999973885566889981-9883344897258489999999999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
                      -|+|.=|=+.++||||||||.+|--++.+..   -..+-+|.-     +....+ |            ..|..+.-+-..
T Consensus       254 ~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~---~p~l~l~~~-----~l~~~~vG------------esE~~~r~~f~~  313 (491)
T CHL00195        254 YGLPTPRGLLLVGIQGTGKSLTAKAIANEWN---LPLLRLDVG-----KLFGGIVG------------ESESRMRQMIQL  313 (491)
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEEEHH-----HHHHHHCC------------HHHHHHHHHHHH
T ss_conf             5999998799979999878999999986638---946996679-----97560067------------049999999999


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECC
Q ss_conf             744897689981433322026554345553022478887677677776420178189998-634
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQM  203 (363)
Q Consensus       141 i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i-NQ~  203 (363)
                      .+.-+.+++.||=+..+.+...-.     ..-|...|+.+++|.-+..  .++.+.+|.+ |.+
T Consensus       314 A~~~aP~ilfiDEidk~~~~~~~~-----~d~g~s~rv~~~~Lt~m~e--~~~~VfViattN~~  370 (491)
T CHL00195        314 AETISPCILWIDEIDKAFSGLDSK-----GDSGTSNRVLATFITWLSE--KKSPVFVVATANNI  370 (491)
T ss_pred             HHHHCCEEEEEEHHHHHCCCCCCC-----CCCCHHHHHHHHHHHHHCC--CCCCEEEEEECCCC
T ss_conf             986198589974654542588888-----8872328999999998646--89976999958997


No 223
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128   Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.29  E-value=0.0015  Score=42.09  Aligned_cols=80  Identities=25%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC---CCCCCCCCCCCCHH-------HHHHHC-C-CCCCCCCEEEEEE
Q ss_conf             4167699999999999867618873797036655---33465501477278-------999723-8-9726880799970
Q gi|255764460|r    7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGS---IFEGIEVVSSGSLG-------LDIALG-I-GGFPKGRIVEIYG   74 (363)
Q Consensus         7 ~~~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~---~~~~~~~i~TG~~~-------lD~~Lg-~-GG~p~Gri~ei~G   74 (363)
                      ++.-...+.|+..+.+...+.   ..|.|= ..+   ..+.+...|-+...       =+ .|- . ==++.|...-|-|
T Consensus       289 ~~Ar~ay~Rl~~ll~~~p~~~---~~m~LP-~P~G~L~vE~v~~~PP~~~~WsqPivPk~-~l~gi~F~~~aGe~laIIG  363 (556)
T TIGR01842       289 SAARQAYKRLNELLAEYPSRA---EAMALP-EPEGHLSVENVTIVPPGGKKWSQPIVPKP-TLRGISFAIQAGEALAIIG  363 (556)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC---CCCCCC-CCCCEEEEEEEEEECCCCCCCCCCCCCHH-HHCCCCEEECCCCEEEEEC
T ss_conf             999999999999998578887---545788-98636888776510786313578977614-2278621563774588874


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             687237899999987520
Q gi|255764460|r   75 PESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        75 ~~~sGKTtlal~~~a~~q   92 (363)
                      |++||||||+ .++...+
T Consensus       364 PSgSGKStLa-R~~vG~W  380 (556)
T TIGR01842       364 PSGSGKSTLA-RILVGIW  380 (556)
T ss_pred             CCCCCHHHHH-HHHHHCC
T ss_conf             7865258898-7887210


No 224
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity.  In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs.  Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29  E-value=0.0037  Score=39.54  Aligned_cols=52  Identities=29%  Similarity=0.463  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHCC
Q ss_conf             72688079997068723789999998752008-98799997388556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~~~~a~~~Gv  117 (363)
                      -++.|.++-+.||.++|||||. .+++...+. .|.+ +++.+ .+++....++|.
T Consensus        22 ~v~~Gei~gllG~NGaGKTTll-~~i~Gl~~p~~G~i-~i~G~-~~~~~~~~~ig~   74 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTI-RMILGIILPDSGEV-LFDGK-PLDIAARNRIGY   74 (210)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCE-ECCHHHHCCEEE
T ss_conf             8879959999989998499999-99960026689989-99998-688443601999


No 225
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28  E-value=0.0019  Score=41.40  Aligned_cols=126  Identities=27%  Similarity=0.358  Sum_probs=64.4

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEECCC
Q ss_conf             72789997238972688079997068723789999998752008987999973885566889981-98833448972584
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQPDT  129 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~~~~  129 (363)
                      -.+.|=.-+   ||.+-+=+.+||||++|||.|| .++|+-.    .|-||-.-   .+++..+. | +-.|+       
T Consensus       172 ~~PElF~~~---GI~PPKGVLLYGPPGTGKTLLA-kAVA~~T----~AtFIrvv---gSElVqKYiG-EGaRl-------  232 (406)
T COG1222         172 KNPELFEEL---GIDPPKGVLLYGPPGTGKTLLA-KAVANQT----DATFIRVV---GSELVQKYIG-EGARL-------  232 (406)
T ss_pred             CCHHHHHHC---CCCCCCCEEEECCCCCCHHHHH-HHHHHCC----CCEEEEEC---CHHHHHHHHC-CCHHH-------
T ss_conf             688899974---9999971276689997588999-9987205----86699942---1999999834-11699-------


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EEC
Q ss_conf             8999999999974489768998143332202655434555302247888767767777642017818999-863
Q gi|255764460|r  130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF-INQ  202 (363)
Q Consensus       130 ~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iNQ  202 (363)
                      +-+.|    .+.++.+..+|+||-|.|.-.+.--++.-+|.-   -.|-|=+.|..|-..=...|+-+|+ ||-
T Consensus       233 VRelF----~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrE---VQRTmleLL~qlDGFD~~~nvKVI~ATNR  299 (406)
T COG1222         233 VRELF----ELAREKAPSIIFIDEIDAIGAKRFDSGTSGDRE---VQRTMLELLNQLDGFDPRGNVKVIMATNR  299 (406)
T ss_pred             HHHHH----HHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHH---HHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf             99999----987414984999831122311113688885099---99999999986058897887689985588


No 226
>pfam05625 PAXNEB PAXNEB protein. PAXNEB or PAX6 neighbour is found in several eukaryotic organisms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop motif. However its sequence has degraded in many members of the family.
Probab=97.27  E-value=0.00065  Score=44.32  Aligned_cols=68  Identities=31%  Similarity=0.421  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCC--CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCCHHHHH
Q ss_conf             53346550147727899972389--726880799970687237899999987520089----879999738855668899
Q gi|255764460|r   40 SIFEGIEVVSSGSLGLDIALGIG--GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALDSIYAR  113 (363)
Q Consensus        40 ~~~~~~~~i~TG~~~lD~~Lg~G--G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~~~~a~  113 (363)
                      ........+|||+++||.+|| |  |+|.|.+..|  +| .|=|.+|..++.-+..+|    -.+.+.+    +..+|++
T Consensus        18 S~~~~q~~tSTG~~sLD~iLg-Gh~GlPlGs~lLI--EE-d~~~~ya~~LlkyF~AEGvv~~h~v~v~s----~p~~~~~   89 (353)
T pfam05625        18 SPHNGQPTTSTGTPSLDKILG-GHGGLPLGSSLLI--EE-DGTTDFASVLLRYFAAEGVVQNHHVFVAS----LPEQWLR   89 (353)
T ss_pred             CCCCCCEEEECCCCCHHHHHC-CCCCCCCCCEEEE--EE-CCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCHHHHH
T ss_conf             878898767328721787717-8877654537999--74-58772799999999872003587699966----8899997


Q ss_pred             HH
Q ss_conf             81
Q gi|255764460|r  114 KL  115 (363)
Q Consensus       114 ~~  115 (363)
                      .|
T Consensus        90 ~L   91 (353)
T pfam05625        90 EL   91 (353)
T ss_pred             HC
T ss_conf             48


No 227
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.26  E-value=0.0057  Score=38.37  Aligned_cols=42  Identities=33%  Similarity=0.517  Sum_probs=30.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-----CCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200-----898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-----TGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-----~g~~~~~iD~E~  105 (363)
                      -+..|.+.-|.|+++||||++++.++.-...     .+|.. .++.++
T Consensus        27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i-~f~g~~   73 (316)
T COG0444          27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKD   73 (316)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEE-EECCCC
T ss_conf             87589689998389788999999998466888974861189-988964


No 228
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli.  The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane.  HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB.  This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport.  Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.26  E-value=0.014  Score=35.94  Aligned_cols=53  Identities=26%  Similarity=0.366  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHH-HHHHC
Q ss_conf             726880799970687237899999987520089879999738--8556688-99819
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIY-ARKLG  116 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~-a~~~G  116 (363)
                      =+|+|.++-|.|+++||||||+--+..-.+...|.+.+ |..  ..+++.. .+.+|
T Consensus        24 ~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i-~g~di~~~~~~~~r~~i~   79 (237)
T cd03252          24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV-DGHDLALADPAWLRRQVG   79 (237)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE-CCEECCCCCHHHHHHHCE
T ss_conf             98799999999999985999999996776579878999-999955189999986018


No 229
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.26  E-value=0.0089  Score=37.14  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             72688079997068723789999998752008987999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      =++.|.++-|.||.|||||||+.++..-.....|.+.|
T Consensus        29 ~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G~V~~   66 (304)
T PRK13651         29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW   66 (304)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf             98599899998799985999999996699988716999


No 230
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.26  E-value=0.0032  Score=39.91  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=56.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCCCC-------CHHHHHHHCCCHHHEEEEECCC-----HHHHHH
Q ss_conf             99970687237899999987520089879999--738855-------6688998198833448972584-----899999
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--DAEHAL-------DSIYARKLGVDLKNLLISQPDT-----GEQALE  135 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i--D~E~~~-------~~~~a~~~Gvd~~~l~~~~~~~-----~E~~~~  135 (363)
                      +-|.|||++|||||--.++....+.|..++.|  |....+       |.-+++.++-|..-++-.-|..     .-++..
T Consensus         2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~~   81 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP   81 (148)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf             76258997878999999999999789837999968887866862032354534415799836863466665420468899


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             99999744897689981433322026554
Q gi|255764460|r  136 ITDMLVRSGAVDIIVIDSVAALTPRAEIE  164 (363)
Q Consensus       136 i~~~li~~~~~~liViDSi~al~p~~Eie  164 (363)
                      -+-.+++...+|+|+|.+++.-.  .|.+
T Consensus        82 ~~i~~l~~~g~D~IiIETvGvGQ--se~~  108 (148)
T cd03114          82 EVIRVLDAAGFDVIIVETVGVGQ--SEVD  108 (148)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCC--CHHH
T ss_conf             99999997599989997487775--6026


No 231
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment.  ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26  E-value=0.0079  Score=37.44  Aligned_cols=42  Identities=31%  Similarity=0.475  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      =++.|.++-|.||++|||||+. .+++...+...--+++|.+.
T Consensus        23 ~i~~Ge~~~ilGpSG~GKSTll-r~i~gl~~p~~G~I~i~g~~   64 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTM-KMINRLIEPTSGEIFIDGED   64 (242)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             8869989999999995699999-99975999981599999999


No 232
>PRK08727 hypothetical protein; Validated
Probab=97.25  E-value=0.0018  Score=41.53  Aligned_cols=87  Identities=21%  Similarity=0.308  Sum_probs=54.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHH-CCC---HHHEE--EEECCCHHHHH
Q ss_conf             7268807999706872378999999875200898799997388556--6889981-988---33448--97258489999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKL-GVD---LKNLL--ISQPDTGEQAL  134 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~-Gvd---~~~l~--~~~~~~~E~~~  134 (363)
                      |-+.. ..-+||++|||||.|+..+|..++..|..+.|++.+....  ++..+.+ +.|   +|++-  .-+++.-|..|
T Consensus        38 ~~~~~-~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~~~~~~l~~le~~~ll~iDDid~i~g~~~~e~aLF  116 (233)
T PRK08727         38 GQSSD-WLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGVDSIAGQREDEVALF  116 (233)
T ss_pred             CCCCC-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCHHHHHHHH
T ss_conf             88889-89998999998899999999999827997288447885320256775310389789855011269827999999


Q ss_pred             HHHHHHHHCCCCCEEEE
Q ss_conf             99999974489768998
Q gi|255764460|r  135 EITDMLVRSGAVDIIVI  151 (363)
Q Consensus       135 ~i~~~li~~~~~~liVi  151 (363)
                      ++++.+..++. .+++-
T Consensus       117 hL~N~~~~~~~-~ll~t  132 (233)
T PRK08727        117 DFHNRARAAGI-TLLYT  132 (233)
T ss_pred             HHHHHHHHCCC-EEEEE
T ss_conf             99999986198-38997


No 233
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.25  E-value=0.0072  Score=37.71  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHHCC
Q ss_conf             7268807999706872378999999875200898799997388--556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~~~a~~~Gv  117 (363)
                      =++.|.++-+.|+.+||||||+-.+ +.......--+++|.+.  .++|..+.+.|+
T Consensus        27 ~i~~GEi~~liG~nGaGKSTL~~~l-~G~~~~~~G~i~~~g~~~~~~~~~~~~~~gi   82 (510)
T PRK09700         27 TVYPGEIHALLGENGAGKSTLMKVL-SGIHEPTKGTITINNINYNKLDHKLAAQLGI   82 (510)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCEEEEECCEECCCCCHHHHHHCCE
T ss_conf             9989969999899997299999998-3799898569999999999899999997894


No 234
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24  E-value=0.0094  Score=37.00  Aligned_cols=38  Identities=37%  Similarity=0.494  Sum_probs=27.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             72688079997068723789999998752008987999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      =++.|.++-|.|+.+||||||+-++..-.....|.+.+
T Consensus        16 ~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~~   53 (276)
T PRK13634         16 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVTI   53 (276)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             99899899999999969999999997499988749999


No 235
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.23  E-value=0.0091  Score=37.08  Aligned_cols=54  Identities=35%  Similarity=0.465  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CC-HHHHHHHCC
Q ss_conf             72688079997068723789999998752008987999973885--56-688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LD-SIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~-~~~a~~~Gv  117 (363)
                      -++.|.++-|.||.|||||||.-.++.-.....|.+ +++.+.-  .+ .++.+++|+
T Consensus        23 ~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~I-~~~g~~i~~~~~~~~~~~ig~   79 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV-LVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE-EECCEECCCCCHHHHHCCEEE
T ss_conf             884997999988999989999999964677988877-899999997998998403899


No 236
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.23  E-value=0.008  Score=37.41  Aligned_cols=43  Identities=37%  Similarity=0.616  Sum_probs=30.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH------CCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200------898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk------~g~~~~~iD~E~  105 (363)
                      -+|+|.++-|.|+.|||||||.-.++.....      -++...|+.-+.
T Consensus        27 ~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~g~i~~v~Q~~   75 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEP   75 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             9769989999999998589999998189525689522589889995877


No 237
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds.  Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders.  The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle.  The ABCA genes are not present in yeast.  However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.23  E-value=0.0049  Score=38.79  Aligned_cols=72  Identities=21%  Similarity=0.234  Sum_probs=38.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCC-CCH-HHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf             972688079997068723789999998752008-987999973885-566-88998198833448972584899999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHA-LDS-IYARKLGVDLKNLLISQPDTGEQALE  135 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~-~~~-~~a~~~Gvd~~~l~~~~~~~~E~~~~  135 (363)
                      =-++.|.++-+.||.+||||||. .+++...+. .|.+ +|+...- -++ ...+.+|+=+..-.+...-|+.+-+.
T Consensus        23 ~~i~~Gei~~llG~NGaGKSTLl-~~i~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~   97 (220)
T cd03263          23 LNVYKGEIFGLLGHNGAGKTTTL-KMLTGELRPTSGTA-YINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLR   97 (220)
T ss_pred             EEECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCCE-EECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHH
T ss_conf             89849959999989997399999-99966987889977-99999776588988605699923565687887999999


No 238
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23  E-value=0.0054  Score=38.52  Aligned_cols=132  Identities=21%  Similarity=0.324  Sum_probs=77.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--------CCC--HHHHHHHCCCHHHEEEEECC--CH
Q ss_conf             7268807999706872378999999875200898799997388--------556--68899819883344897258--48
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--------ALD--SIYARKLGVDLKNLLISQPD--TG  130 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--------~~~--~~~a~~~Gvd~~~l~~~~~~--~~  130 (363)
                      -+..|.+.-+.|+++|||||++-.++.-.....|.+.| +...        ...  .+.++..|+..+.+. -.|+  ++
T Consensus        35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~-ryPhelSG  112 (268)
T COG4608          35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLY-RYPHELSG  112 (268)
T ss_pred             EECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE-CCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHH-CCCCCCCC
T ss_conf             97589878999368887787999997283888726998-68531113666799999999998098877863-38830373


Q ss_pred             --HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-----
Q ss_conf             --9999999999744897689981433322026554345553022478887677677776420178189998634-----
Q gi|255764460|r  131 --EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM-----  203 (363)
Q Consensus       131 --E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~-----  203 (363)
                        -|-+.|+..|.-  ..++||.|=..++.          |.  -.||.++    ..|...-.+.+.+.+||.|-     
T Consensus       113 GQrQRi~IARALal--~P~liV~DEpvSaL----------Dv--SiqaqIl----nLL~~lq~~~~lt~lFIsHDl~vv~  174 (268)
T COG4608         113 GQRQRIGIARALAL--NPKLIVADEPVSAL----------DV--SVQAQIL----NLLKDLQEELGLTYLFISHDLSVVR  174 (268)
T ss_pred             HHHHHHHHHHHHHH--CCCEEEECCCHHHC----------CH--HHHHHHH----HHHHHHHHHHCCEEEEEEEEHHHHH
T ss_conf             13356999999850--98679743721101----------24--6799999----9999999985975899987777666


Q ss_pred             --CCCCCCCCCCC
Q ss_conf             --11456654665
Q gi|255764460|r  204 --RMKIGVMFGSP  214 (363)
Q Consensus       204 --r~~ig~m~g~p  214 (363)
                        -+.+.+||-..
T Consensus       175 ~isdri~Vmy~G~  187 (268)
T COG4608         175 YISDRIAVMYLGK  187 (268)
T ss_pred             HHCCCEEEEECCC
T ss_conf             4044478875474


No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23  E-value=0.014  Score=35.83  Aligned_cols=42  Identities=29%  Similarity=0.357  Sum_probs=30.1

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             9726880799970687237899999987520089879999738
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      =-++.|..+-|.|+.+||||||+-.++.-.+...|.+ +||-.
T Consensus        24 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~idg~   65 (229)
T cd03254          24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGI   65 (229)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCE
T ss_conf             9987999999999999809999999966866787389-99999


No 240
>KOG0744 consensus
Probab=97.22  E-value=0.0026  Score=40.47  Aligned_cols=136  Identities=18%  Similarity=0.248  Sum_probs=74.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHH----HHHCCCEEEEEECC-CCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHH
Q ss_conf             7268807999706872378999999875----20089879999738-855668899819883344897258489999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAFVDAE-HALDSIYARKLGVDLKNLLISQPDTGEQALEIT  137 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~----~qk~g~~~~~iD~E-~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~  137 (363)
                      =|..+|++.+-||||+|||+||-.++..    ++..-.++..|.-- |++=.-|...-|-           .+-++|+-+
T Consensus       173 lIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgK-----------lV~kmF~kI  241 (423)
T KOG0744         173 LITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGK-----------LVAKMFQKI  241 (423)
T ss_pred             EEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_conf             466414899857999882279999987514652376444069997046788988712113-----------899999999


Q ss_pred             HHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf             9997448-9768998143332202655434555302247888767767777642017818999863411456654
Q gi|255764460|r  138 DMLVRSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF  211 (363)
Q Consensus       138 ~~li~~~-~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~  211 (363)
                      ++|++.. ..-++.||-|-+|....+-  .+...-....-|..+..|..+-..-...|..++.|.-+.+.+...|
T Consensus       242 ~ELv~d~~~lVfvLIDEVESLa~aR~s--~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~Af  314 (423)
T KOG0744         242 QELVEDRGNLVFVLIDEVESLAAARTS--ASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAF  314 (423)
T ss_pred             HHHHHCCCCEEEEEEHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf             999717896899980787888999875--4137998218999999999899860479779996262677778886


No 241
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.22  E-value=0.0041  Score=39.24  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|-||++||||||. .+++...+...-.+++|.+.
T Consensus        39 ~I~~GE~~~llGpSGsGKSTLl-r~iaGl~~p~sG~I~~~G~~   80 (378)
T PRK09452         39 TINNGEFLTLLGPSGCGKTTVL-RLIAGFETPDSGRIMLDGQD   80 (378)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9999989999989997699999-99976999984699999999


No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.22  E-value=0.0017  Score=41.64  Aligned_cols=85  Identities=19%  Similarity=0.352  Sum_probs=50.3

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC--CHHHHHHH-CCC---HHHEE--EEECCCHHHHHHH
Q ss_conf             6880799970687237899999987520089879999738855--66889981-988---33448--9725848999999
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL--DSIYARKL-GVD---LKNLL--ISQPDTGEQALEI  136 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~--~~~~a~~~-Gvd---~~~l~--~~~~~~~E~~~~i  136 (363)
                      |.++..-||||+|||||.|+--++..+...+..++|++.+.-.  .++..+.+ ..|   .|++-  .-.+.+-|..|++
T Consensus        36 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l  115 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHL  115 (226)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCCHHHHHHHHHH
T ss_conf             68886999899999889999999999862699579952999877539999727448999996633343783789999999


Q ss_pred             HHHHHHCCCCCEEE
Q ss_conf             99997448976899
Q gi|255764460|r  137 TDMLVRSGAVDIIV  150 (363)
Q Consensus       137 ~~~li~~~~~~liV  150 (363)
                      +..+..++. .+++
T Consensus       116 ~N~~~~~~~-~ili  128 (226)
T TIGR03420       116 YNRVREAGG-RLLI  128 (226)
T ss_pred             HHHHHHHCC-EEEE
T ss_conf             999986528-2898


No 243
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=97.21  E-value=0.00098  Score=43.18  Aligned_cols=81  Identities=22%  Similarity=0.329  Sum_probs=49.6

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             88079997068723789999998752008987999973885566889981988334489725848999999999974489
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA  145 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~  145 (363)
                      .|.++=+.|.++|||||||-.+....++.|..+++||... +...+-..+|-+.+.    +..+..-.-.++..|.++| 
T Consensus         1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~-~R~~l~~dlgys~~~----R~~n~~r~~~lak~l~~~g-   74 (157)
T pfam01583         1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDN-VRHGLNKDLGFSEED----RTENIRRIAEVAKLFADAG-   74 (157)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH-HHCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHCCC-
T ss_conf             9889998898999999999999999997599779976887-750125777989899----9999999999999984289-


Q ss_pred             CCEEEEECC
Q ss_conf             768998143
Q gi|255764460|r  146 VDIIVIDSV  154 (363)
Q Consensus       146 ~~liViDSi  154 (363)
                        ++||=|+
T Consensus        75 --~~VIvs~   81 (157)
T pfam01583        75 --LIVITSF   81 (157)
T ss_pred             --CEEEEEC
T ss_conf             --6588721


No 244
>PRK13544 consensus
Probab=97.20  E-value=0.004  Score=39.35  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCC-CCHHHHHHHC
Q ss_conf             726880799970687237899999987520089-87999973885-5668899819
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHA-LDSIYARKLG  116 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E~~-~~~~~a~~~G  116 (363)
                      -++.|.++-+.||.|||||||. .+++...+.. |.+. ++.+.- -++.|..+++
T Consensus        23 ~i~~Gei~~l~G~NGsGKSTLl-~~i~Gl~~p~~G~I~-~~G~~i~~~~~~~~~i~   76 (208)
T PRK13544         23 TAKQNSLTLVIGNNGSGKTSLL-RLLAGLIPITHGNIK-YNGENIHDSDTYITSIT   76 (208)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEE-ECCEECCCCHHHHCCEE
T ss_conf             9829949999999999899999-999588068974899-99999987837660727


No 245
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.20  E-value=0.011  Score=36.45  Aligned_cols=54  Identities=17%  Similarity=0.264  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHHCCC
Q ss_conf             2688079997068723789999998752008987999973885--566889981988
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVD  118 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~Gvd  118 (363)
                      +.+|.++-+.|+.++|||||+ .+++.....+.--+++|.+..  .+|.-|++.|+-
T Consensus        31 v~~GEV~aL~GeNGAGKSTLm-KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~   86 (500)
T COG1129          31 VRPGEVHALLGENGAGKSTLM-KILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA   86 (500)
T ss_pred             EECCEEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
T ss_conf             837728999668888899999-99728615886179999988068999999868908


No 246
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.20  E-value=0.0058  Score=38.30  Aligned_cols=122  Identities=19%  Similarity=0.296  Sum_probs=62.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHHCCCH-----------------HHEE
Q ss_conf             7268807999706872378999999875200898799997388--55668899819883-----------------3448
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSIYARKLGVDL-----------------KNLL  123 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~~~a~~~Gvd~-----------------~~l~  123 (363)
                      -+..|.++-+.||.+||||||+-.++.......|.+. ++...  ..+|..+.+.|+-.                 +++.
T Consensus        22 ~v~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~-~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~~v~en~~  100 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA  100 (182)
T ss_pred             EECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEE-ECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCCCHHHHHH
T ss_conf             9859969999888999926377876698678877599-999998864999999789699602076625678990999951


Q ss_pred             EEECCC-HH-HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             972584-89-9999999997448976899814333220265543455530224788876776777764201781899986
Q gi|255764460|r  124 ISQPDT-GE-QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN  201 (363)
Q Consensus       124 ~~~~~~-~E-~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iN  201 (363)
                      +...-+ ++ |-+.++..|+.  ..++++.|=-.+     -+|-       ... +.+-+.+++    +.+.++++|++.
T Consensus       101 ~~~~LSGG~~Qrv~lAral~~--~p~llllDEPT~-----gLD~-------~~~-~~i~~~i~~----l~~~g~tvi~is  161 (182)
T cd03215         101 LSSLLSGGNQQKVVLARWLAR--DPRVLILDEPTR-----GVDV-------GAK-AEIYRLIRE----LADAGKAVLLIS  161 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCC-----CCCH-------HHH-HHHHHHHHH----HHHCCCEEEEEE
T ss_conf             855799899999999999971--999999868754-----5899-------999-999999999----997899999996


Q ss_pred             CCC
Q ss_conf             341
Q gi|255764460|r  202 QMR  204 (363)
Q Consensus       202 Q~r  204 (363)
                      |--
T Consensus       162 Hdl  164 (182)
T cd03215         162 SEL  164 (182)
T ss_pred             CCH
T ss_conf             879


No 247
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.19  E-value=0.013  Score=36.17  Aligned_cols=36  Identities=36%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             726880799970687237899999987520089879
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC   98 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~   98 (363)
                      =++.|.++-|.|+.|||||||+.+++.-.....|.+
T Consensus        48 ~i~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p~~G~I   83 (320)
T PRK13631         48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI   83 (320)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf             885998999994999849999999975888998359


No 248
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.19  E-value=0.0072  Score=37.72  Aligned_cols=39  Identities=21%  Similarity=0.193  Sum_probs=28.6

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             972688079997068723789999998752008987999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      ==++.|.++-|.|+.+||||||+..+..-.....|.+.|
T Consensus        28 l~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~~   66 (280)
T PRK13649         28 LDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSV   66 (280)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             898799899999599986999999996699988608999


No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18  E-value=0.0091  Score=37.07  Aligned_cols=37  Identities=30%  Similarity=0.529  Sum_probs=28.6

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             80799970687237899999987520089879999738
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      |-++-|.||++|||||| |++++...+...--+++|.+
T Consensus        23 ge~~~iiGpSGsGKSTl-l~~i~GL~~p~sG~I~~~G~   59 (214)
T cd03297          23 EEVTGIFGASGAGKSTL-LRCIAGLEKPDGGTIVLNGT   59 (214)
T ss_pred             CCEEEEECCCCCHHHHH-HHHHHCCCCCCCEEEEECCE
T ss_conf             97999999997359999-99998499999649999999


No 250
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18  E-value=0.0015  Score=42.07  Aligned_cols=138  Identities=21%  Similarity=0.242  Sum_probs=74.6

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC----HHHHHHHCC---CHHHEEEEEC-------
Q ss_conf             97268807999706872378999999875200898799997388556----688998198---8334489725-------
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD----SIYARKLGV---DLKNLLISQP-------  127 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~----~~~a~~~Gv---d~~~l~~~~~-------  127 (363)
                      -.++.|..+.|.|+.+||||||..++..-.....|.+ ++|......    .+..++.|+   +++.-++..+       
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf  103 (235)
T COG1122          25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF  103 (235)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCCHHHHHHHHCCEEEEEECHHHCEECCCHHHHHHC
T ss_conf             8987898999988999889999999537676889848-877813310021887631216999971126104758888753


Q ss_pred             ------CCHHHHHHHHHH-HH---------------HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             ------848999999999-97---------------44897689981433322026554345553022478887677677
Q gi|255764460|r  128 ------DTGEQALEITDM-LV---------------RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK  185 (363)
Q Consensus       128 ------~~~E~~~~i~~~-li---------------~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk  185 (363)
                            -..|++-..++. |.               .-|....+.|.|+=|+-|+-=+-+   +...++..+.-...++.
T Consensus       104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD---EPta~LD~~~~~~l~~~  180 (235)
T COG1122         104 GLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD---EPTAGLDPKGRRELLEL  180 (235)
T ss_pred             CHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEEC---CCCCCCCHHHHHHHHHH
T ss_conf             574449998999999999999818611123881106973166588668887189899974---99889897899999999


Q ss_pred             HHHHHCCCCCEEEEEECC
Q ss_conf             776420178189998634
Q gi|255764460|r  186 LTSSISRSKCILVFINQM  203 (363)
Q Consensus       186 l~~~~~k~~~~~i~iNQ~  203 (363)
                      +.......+.++|++.|-
T Consensus       181 l~~L~~~~~~tiii~tHd  198 (235)
T COG1122         181 LKKLKEEGGKTIIIVTHD  198 (235)
T ss_pred             HHHHHHCCCCEEEEEECC
T ss_conf             999886079769999474


No 251
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.18  E-value=0.0021  Score=41.06  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHH-----HHHHHHHHC
Q ss_conf             799970687237899999987520089879999738855668899819883344897258489999-----999999744
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL-----EITDMLVRS  143 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~-----~i~~~li~~  143 (363)
                      ++.+.|.|+|||||+|-++....++.|..|++|+. +++.        ++-+.  |.. ...|..+     ..++..+. 
T Consensus         1 Livl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d-~~~~--------~~~~~--y~~-s~~Ek~~R~~l~s~v~r~Ls-   67 (266)
T pfam08433         1 LIILTGLPSSGKSTRAKELAKYLEEKGYDVIVISD-ESLG--------IESDD--YKD-SKKEKFLRGSLRSAVKRDLS-   67 (266)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCCC--------CCCCC--CCC-CHHHHHHHHHHHHHHHHHHC-
T ss_conf             97985799996889999999999975993899780-0126--------75310--001-04789999999999987516-


Q ss_pred             CCCCEEEEECCC
Q ss_conf             897689981433
Q gi|255764460|r  144 GAVDIIVIDSVA  155 (363)
Q Consensus       144 ~~~~liViDSi~  155 (363)
                       .-++||+||+-
T Consensus        68 -~~~iVIlD~~N   78 (266)
T pfam08433        68 -KNTIVIVDSLN   78 (266)
T ss_pred             -CCCEEEECCCC
T ss_conf             -68889954874


No 252
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18  E-value=0.0042  Score=39.16  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             079997068723789999998752008987999973885566-------8899819883344897258489999999999
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
                      ..+-+.||.|.||||....++|.....+..+++|.+. +++.       .|++-+|+.+.-  +..|+..++++   ..+
T Consensus       242 q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtD-TYRIGAVEQLKTYAeIMgVPV~V--V~dp~eL~~AL---~~l  315 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIA--VRDEAAMTRAL---TYF  315 (436)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECC-CCHHHHHHHHHHHHHHHCCCEEE--ECCHHHHHHHH---HHH
T ss_conf             1799989999888999999999986169808999806-63476999999999984994399--68889999999---987


Q ss_pred             HHCCCCCEEEEECCCC
Q ss_conf             7448976899814333
Q gi|255764460|r  141 VRSGAVDIIVIDSVAA  156 (363)
Q Consensus       141 i~~~~~~liViDSi~a  156 (363)
                      -.....|+|+||..|-
T Consensus       316 kdka~~DLILIDTAGR  331 (436)
T PRK11889        316 KEEARVDYILIDTAGK  331 (436)
T ss_pred             HHCCCCCEEEEECCCC
T ss_conf             6336888899929898


No 253
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714    Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below.   The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , .   The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=97.18  E-value=0.0012  Score=42.55  Aligned_cols=161  Identities=24%  Similarity=0.336  Sum_probs=101.8

Q ss_pred             CCCCC-CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CHHHHH-HHCCC
Q ss_conf             34655-0147727899972389726880799970687237899999987520089879999738855-668899-81988
Q gi|255764460|r   42 FEGIE-VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-DSIYAR-KLGVD  118 (363)
Q Consensus        42 ~~~~~-~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~-~~~~a~-~~Gvd  118 (363)
                      +..++ .++||.-++|.+|.+|   +|.=+=||--++.|||||.-.+++|..+++-.|+=+=-|..= =+||.| .||-+
T Consensus       150 R~~i~~~~~tGVR~iD~LLTvG---kGQR~GIFAGSGVGKStLlGMIARn~~~ADv~ViALIGERGREV~EFIE~~LG~E  226 (455)
T TIGR01026       150 REPIREILSTGVRSIDGLLTVG---KGQRIGIFAGSGVGKSTLLGMIARNNTEADVNVIALIGERGREVKEFIEKDLGEE  226 (455)
T ss_pred             CCCCHHHEECCCEEECCCCCCC---CCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             6300021003645310103555---6650135503760034456676300678982799864377774157886313656


Q ss_pred             -HHH--EEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHHH--CCCHHHHHHHHHH
Q ss_conf             -334--48972584--------89999999999744897689981433--322026554345553--0224788876776
Q gi|255764460|r  119 -LKN--LLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVA--ALTPRAEIEGDMGES--LPGMQARLMSQAL  183 (363)
Q Consensus       119 -~~~--l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~--al~p~~Eie~~~~d~--~~g~~ar~ms~~l  183 (363)
                       +.+  ++++..|-        +=-|+.|+|.+-.+|.--+++.|||+  |+. +.|+-=..||-  ..|=-    -..|
T Consensus       227 GLkrSV~VVaTSD~SPl~R~~GAy~At~iAEYFrdqGk~VlLlmDSvTRfA~A-qREiGLA~GEPP~~kGYt----PSVF  301 (455)
T TIGR01026       227 GLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMA-QREIGLAAGEPPATKGYT----PSVF  301 (455)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHEEHHHHHHHHHCCCEEEEEHHHHHHHHHH-HHHHHHHCCCCCCCCCCC----CCHH
T ss_conf             66011799836886388887326400254354652187056202027899889-889987437777777778----5488


Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             777764201781899986341145665466512565531111112
Q gi|255764460|r  184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS  228 (363)
Q Consensus       184 rkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS  228 (363)
                      ..|..++.+++.-             .+     -.||..-.||+=
T Consensus       302 ~~LP~LlERaG~G-------------~~-----~~GGSITAFYTV  328 (455)
T TIGR01026       302 SLLPRLLERAGKG-------------AS-----GKGGSITAFYTV  328 (455)
T ss_pred             HHHHHHHHHHCCC-------------CC-----CCCCEEEEEEEE
T ss_conf             9989999760687-------------35-----779579888888


No 254
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.18  E-value=0.01  Score=36.75  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=29.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             972688079997068723789999998752008987999973
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA  103 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~  103 (363)
                      =-++.|.++-|.|+.+||||||+-++..-.....|.+ +++.
T Consensus        28 l~I~~Ge~~~iiG~nGsGKSTLl~~l~Gll~P~sG~V-~i~G   68 (286)
T PRK13641         28 FELEDGSFVALIGHTGSGKSTLMQHFNALLKPSSGKI-TIAG   68 (286)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECC
T ss_conf             7986999999999998399999999965989885499-9998


No 255
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.17  E-value=0.012  Score=36.25  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             72688079997068723789999998752008987999973885
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA  106 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~  106 (363)
                      =++.|-++-|.||++||||||. .+++...+...--++||.+.-
T Consensus        50 ~I~~GEi~~ivG~SGsGKSTLl-r~i~gL~~Pt~G~I~i~G~di   92 (400)
T PRK10070         50 AIEEGEIFVIMGLSGSGKSTMV-RLLNRLIEPTRGQVLIDGVDI   92 (400)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECCEEC
T ss_conf             8879999999999984699999-999759998981899999999


No 256
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.17  E-value=0.0063  Score=38.07  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf             726880799970687237899999987520089-879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E  104 (363)
                      -++.|.++-|.||.|||||||. .+++...+.. |.+ .+|..
T Consensus        23 ~i~~Ge~~~lvGpnGaGKSTLl-~~i~Gl~~p~~G~I-~~~G~   63 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLL-NLIAGFVPPQHGSI-TLDGK   63 (255)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEE-EECCC
T ss_conf             9869989999999984699999-99975998899718-57996


No 257
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.16  E-value=0.0015  Score=41.96  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=30.1

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             799970687237899999987520089879999738
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|.|.|+|||||+|-++....+..|..++.+..+
T Consensus         1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d   36 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTD   36 (249)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             978967899989999999999999829965996552


No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.16  E-value=0.0052  Score=38.61  Aligned_cols=114  Identities=25%  Similarity=0.346  Sum_probs=75.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEECCCHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566889981-98833448972584899999999997
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQPDTGEQALEITDMLV  141 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~~~~~E~~~~i~~~li  141 (363)
                      |+.+-+=+.+||||++|||.||- .+|+-..    +-||...+   |+.+.++ |            ..|.++.-+-.-.
T Consensus       571 G~~PP~Gvll~GPPGtGktllak-ava~es~----anfi~v~G---Pe~lskWvG------------ese~~ir~if~~a  630 (980)
T TIGR01243       571 GIRPPKGVLLFGPPGTGKTLLAK-AVATESG----ANFIAVRG---PEILSKWVG------------ESEKAIREIFRKA  630 (980)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHH-HHHHCCC----CCEEEECC---CHHHHHHHC------------HHHHHHHHHHHHH
T ss_conf             78899734874689861688888-7740145----64677407---312234403------------2479999999986


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             44897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r  142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI  200 (363)
Q Consensus       142 ~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i  200 (363)
                      ++.+..+|++|.+.|..|..-..    ....|..-|+.++.|.-+-.+...+++.+|.-
T Consensus       631 rq~aP~~~f~deidaiaP~rG~~----~~~~~vtd~~~nqll~e~dG~~~~~~vvvi~a  685 (980)
T TIGR01243       631 RQAAPAIIFFDEIDAIAPARGAS----LDEKGVTDRIVNQLLTELDGLEELSDVVVIAA  685 (980)
T ss_pred             HHCCCEEEEEECHHHHCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             41287378730211105412442----10010268999999986404434366589861


No 259
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15  E-value=0.004  Score=39.33  Aligned_cols=40  Identities=30%  Similarity=0.497  Sum_probs=28.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             72688079997068723789999998752008987999973
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA  103 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~  103 (363)
                      -++.|.++-|.||++||||||. .+++...+...--++++.
T Consensus        26 ~i~~Ge~~~iiGpsGsGKSTLl-~~i~Gl~~p~~G~I~~~G   65 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTLL-RIIAGLERPTSGEVLVDG   65 (220)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECC
T ss_conf             9879989999999995799999-999759998873899999


No 260
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=97.14  E-value=0.022  Score=34.61  Aligned_cols=137  Identities=18%  Similarity=0.267  Sum_probs=72.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC--------------HH--------
Q ss_conf             72688079997068723789999998752008987999973885566889981988--------------33--------
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------------LK--------  120 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd--------------~~--------  120 (363)
                      +-++..+.-....|+.||||+|..++....+.|..++.||+.-. .|...+.+|++              ++        
T Consensus       100 ~~~~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLR-rP~lh~~f~l~~~~GLs~vL~g~~~l~~i~~~~~~  178 (274)
T TIGR03029       100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLR-DPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPAL  178 (274)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-CCHHHHHHCCCCCCCHHHHHCCCCCHHHEEECCCC
T ss_conf             78883899968999998999999999999967991999958888-84477975999976878884599988990515898


Q ss_pred             -HEEEEE-----CCCHH----HHH-HHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Q ss_conf             -448972-----58489----999-999999744897689981433322-0265543455530--224788876776777
Q gi|255764460|r  121 -NLLISQ-----PDTGE----QAL-EITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMGESL--PGMQARLMSQALRKL  186 (363)
Q Consensus       121 -~l~~~~-----~~~~E----~~~-~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~d~~--~g~~ar~ms~~lrkl  186 (363)
                       ++.+.+     |+..|    +.| ++++.+ + ..+|+||||+-..+. +-+.+-....|..  |...-+--...++..
T Consensus       179 ~nL~VLpaG~~ppnP~eLL~s~~~~~ll~~l-~-~~yD~IIiDTPPvl~~sDA~ila~~aDg~LlVvR~~~T~~~~l~~a  256 (274)
T TIGR03029       179 ENLSVLPAGAIPPNPQELLARPAFTDLLNKV-M-GDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNETRLHELTSL  256 (274)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHH-H-HHCCEEEEECCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHH
T ss_conf             9978996999998979987358999999999-8-4099999938986554349999986897999996898889999999


Q ss_pred             HHHHCCC--CCEEEEEEC
Q ss_conf             7642017--818999863
Q gi|255764460|r  187 TSSISRS--KCILVFINQ  202 (363)
Q Consensus       187 ~~~~~k~--~~~~i~iNQ  202 (363)
                      ...+...  ++.-++.||
T Consensus       257 ~~~L~~~g~~VlGvVLNq  274 (274)
T TIGR03029       257 KEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             HHHHHHCCCCEEEEEECC
T ss_conf             999997799668998487


No 261
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.14  E-value=0.018  Score=35.24  Aligned_cols=51  Identities=31%  Similarity=0.397  Sum_probs=34.4

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             727899972389726880799970687237899999987520089879999738
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      |.++|+- +. =-++.|.++-|.|+.|||||||+.++..-.....|.+. ++..
T Consensus        14 ~~~aL~~-vs-l~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~I~-v~G~   64 (274)
T PRK13644         14 GTPALEN-IN-LVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL-VSGI   64 (274)
T ss_pred             CCEEEEE-EE-EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-ECCE
T ss_conf             9846631-17-79848999999999998099999999706858887299-9999


No 262
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.13  E-value=0.002  Score=41.21  Aligned_cols=82  Identities=24%  Similarity=0.323  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEEC
Q ss_conf             14772789997238972688079997068723789999998752008987999973885566889981988334489725
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP  127 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~  127 (363)
                      +.+....+..... -+-+...+ .+|||||+||||+| +++|.....  .+.                        ....
T Consensus        33 ~~~l~~~i~a~~~-~~~~l~h~-lf~GPPG~GKTTlA-riiAk~~~~--~~~------------------------~~s~   83 (234)
T pfam05496        33 KENLKIFIEAAKK-RGEALDHV-LLYGPPGLGKTTLA-NIIANEMGV--NIR------------------------ITSG   83 (234)
T ss_pred             HHHHHHHHHHHHH-CCCCCCEE-EEECCCCCCHHHHH-HHHHHHHCC--CEE------------------------EECC
T ss_conf             9999999998874-27776627-88789999888999-999984087--537------------------------6142


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             8489999999999744897689981433322
Q gi|255764460|r  128 DTGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       128 ~~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      ...+.+-++...+...+..++++||-+-.+.
T Consensus        84 ~~i~~~~di~~~l~~~~~~~ILFIDEIHr~n  114 (234)
T pfam05496        84 PALEKPGDLAAILTNLEPGDVLFIDEIHRLN  114 (234)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHCC
T ss_conf             6664389999999845899889996654358


No 263
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.13  E-value=0.0012  Score=42.70  Aligned_cols=91  Identities=23%  Similarity=0.414  Sum_probs=54.2

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC------------------------------CC
Q ss_conf             014772789997238972688079997068723789999998752008------------------------------98
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------------------------------GG   96 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~------------------------------g~   96 (363)
                      .+.-|. .|-.++-.+-+|.  ++ +|||||||||||| +++|+..+.                              ..
T Consensus        36 llg~g~-~Lrr~i~~~~~~S--~I-l~GPPGtGKTTLA-~iIA~~t~~~F~~lsAv~sgvkdlr~ii~~A~~~~~~~g~~  110 (726)
T PRK13341         36 ILGEGR-LLRRAIKADRVGS--LI-LYGPPGVGKTTLA-RIIANHTRAHFSSLNAVLAGVKDLRAEVDAAKERLERHGKR  110 (726)
T ss_pred             HCCCCC-HHHHHHHCCCCCE--EE-EECCCCCCHHHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             428982-8999997699982--78-8897999999999-99988748867998562037799999999999998745996


Q ss_pred             EEEEEECCCCCCHH-------HHHH-----HCCC------------HHH--EEEEECCCHHHHHHHHHHHHH
Q ss_conf             79999738855668-------8998-----1988------------334--489725848999999999974
Q gi|255764460|r   97 TCAFVDAEHALDSI-------YARK-----LGVD------------LKN--LLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        97 ~~~~iD~E~~~~~~-------~a~~-----~Gvd------------~~~--l~~~~~~~~E~~~~i~~~li~  142 (363)
                      .++|||-=|.|++.       +.|+     +|--            ++|  ++..+|-+.++...+++..+.
T Consensus       111 tILFIDEIHRfNK~QQD~LLp~vE~G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~rAl~  182 (726)
T PRK13341        111 TILFIDEVHRFNKAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLKRALQ  182 (726)
T ss_pred             EEEEEECHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             599986254258878998788860683899970478974364298883234667438999999999999987


No 264
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids.  The  E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.13  E-value=0.0079  Score=37.45  Aligned_cols=53  Identities=30%  Similarity=0.449  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCC--CCCHHHHHHHCC
Q ss_conf             7268807999706872378999999875200-898799997388--556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH--ALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~--~~~~~~a~~~Gv  117 (363)
                      -++.|.++-|.||.+||||||. .++....+ ..|.+ +++.+.  ..++....+.|+
T Consensus        22 ~v~~Gei~~liG~nGaGKSTLl-~~i~Gl~~p~~G~I-~~~G~~i~~~~~~~~~~~gi   77 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLL-KTIMGLLPPRSGSI-RFDGRDITGLPPHERARAGI   77 (222)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEE-EECCEECCCCCHHHHHHCCE
T ss_conf             9889989999999998599999-99977988996099-99999999999999997593


No 265
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.11  E-value=0.013  Score=36.09  Aligned_cols=35  Identities=31%  Similarity=0.530  Sum_probs=25.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEE
Q ss_conf             7268807999706872378999999875200-89879
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTC   98 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~   98 (363)
                      -++.|.++-|.||.|||||||+ .+++...+ ..|.+
T Consensus        34 ~I~~GEiv~LiG~nGaGKSTLl-r~i~Gl~~p~~G~I   69 (257)
T PRK11247         34 HIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPTAGDL   69 (257)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEE
T ss_conf             8879989999989988899999-99965898888708


No 266
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.10  E-value=0.014  Score=35.94  Aligned_cols=233  Identities=16%  Similarity=0.222  Sum_probs=111.6

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCC-CHH--------------
Q ss_conf             0147727899972389726880799970687237899999987520089879999738-855-668--------------
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-HAL-DSI--------------  110 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E-~~~-~~~--------------  110 (363)
                      +.| |..++|..  .=-++.|.|.-+-|+.+.|||||+ +++....+.+.--+++|.. -.| +|.              
T Consensus        13 ~f~-~~~And~V--~l~v~~GeIHaLLGENGAGKSTLm-~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF   88 (501)
T COG3845          13 RFP-GVVANDDV--SLSVKKGEIHALLGENGAGKSTLM-KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF   88 (501)
T ss_pred             ECC-CEEECCCE--EEEECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEECCEEECCCCHHHHHHCCCCEEEECC
T ss_conf             708-77863761--245637748999606887799999-99847305886359999998246997999970884896043


Q ss_pred             -----------------------------------HHHHHCCCH--HHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             -----------------------------------899819883--3448972584899999999997448976899814
Q gi|255764460|r  111 -----------------------------------YARKLGVDL--KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS  153 (363)
Q Consensus       111 -----------------------------------~a~~~Gvd~--~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDS  153 (363)
                                                         ..+++|+++  +..+..-|--..|-.+|+..|.+.  .+++|+|-
T Consensus        89 ~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~--a~iLILDE  166 (501)
T COG3845          89 MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG--ARLLILDE  166 (501)
T ss_pred             CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCC--CCEEEECC
T ss_conf             0146500445542137643456567899999999999985999880006601780155788999998649--98899759


Q ss_pred             CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC------
Q ss_conf             33322026554345553022478887677677776420178189998634114566546651256553111111------
Q gi|255764460|r  154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS------  227 (363)
Q Consensus       154 i~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~a------  227 (363)
                      =++..+..|++.                +|..+ ..+.+.+.++|||.|==..+-..--.-++.-.|+-...+-      
T Consensus       167 PTaVLTP~E~~~----------------lf~~l-~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t  229 (501)
T COG3845         167 PTAVLTPQEADE----------------LFEIL-RRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETT  229 (501)
T ss_pred             CCCCCCHHHHHH----------------HHHHH-HHHHHCCCEEEEEECCHHHHHHHHCEEEEEECCEEEEEECCCCCCC
T ss_conf             753589899999----------------99999-9999779979999350899997637369985774886635777889


Q ss_pred             ---CEEEEEEC-------CCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCC-----CCCC--CCHHHHHHHHCC
Q ss_conf             ---24897504-------553445772476799987740577898515899986187-----4231--115999997328
Q gi|255764460|r  228 ---SVRLDIRR-------VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-----GISF--FGELIDLGVKAS  290 (363)
Q Consensus       228 ---S~rl~i~k-------~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~-----GI~~--~~~lldla~~~g  290 (363)
                         ..+|-+.+       ...-..+ +.+=.--...+..++-+++.+.+.|++.-|.     |++-  -.++++...  |
T Consensus       230 ~~ela~lMvG~~v~~~~~~~~~~pg-~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eais--G  306 (501)
T COG3845         230 EEELAELMVGREVVLRVVKPPSTPG-EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAIS--G  306 (501)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHH--C
T ss_conf             9999998547854533456888999-718999446850688974011463687058689997037888999999983--8


Q ss_pred             CCEECCCEEEECCEE
Q ss_conf             623027447888945
Q gi|255764460|r  291 IVDKSGAWFSFKGQR  305 (363)
Q Consensus       291 iI~k~Gawy~~~~e~  305 (363)
                      +-+.......++++.
T Consensus       307 lr~~~~G~I~l~G~~  321 (501)
T COG3845         307 LRKPASGRILLNGKD  321 (501)
T ss_pred             CCCCCCCEEEECCEE
T ss_conf             874678639998873


No 267
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.08  E-value=0.019  Score=35.01  Aligned_cols=121  Identities=25%  Similarity=0.407  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-------CCEEEEEECCCCCCHHH---------HHHHCCCHHHEE---
Q ss_conf             72688079997068723789999998752008-------98799997388556688---------998198833448---
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAFVDAEHALDSIY---------ARKLGVDLKNLL---  123 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-------g~~~~~iD~E~~~~~~~---------a~~~Gvd~~~l~---  123 (363)
                      -++.|.++-|.|+.|||||||. .+++.....       .|.+.+++.-..|+|+.         +.-+|+..+.+-   
T Consensus        46 eV~kGE~vGIIG~NGAGKSTLL-KiIaGI~~PTsG~V~V~Gk~sLL~lgaGf~~eLTGrENI~L~g~~lGlsk~eI~~~~  124 (549)
T PRK13545         46 EVPEGEIVGIVGLNGSGKSTLS-NLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGITKEKIKEII  124 (549)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             8648989999889999899999-999689889860899946898774055769776299999988998498999999989


Q ss_pred             ------------EEEC----CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             ------------9725----848999999999974489768998143332202655434555302247888767767777
Q gi|255764460|r  124 ------------ISQP----DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT  187 (363)
Q Consensus       124 ------------~~~~----~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~  187 (363)
                                  +-+|    .++..+ .+.-.+.-.-..|++++|=+-+.               | .++...+.+.++.
T Consensus       125 deIiEFAELGdFid~PVKtYSSGMka-RLgFAIA~~~dPDILIIDEaLSV---------------G-D~~F~~Kc~~rm~  187 (549)
T PRK13545        125 PEIIDFADIGKFMYQPVKTYSSGMKS-RLGFAISVHINPDILVIDEALSV---------------G-DQTFTKKCLDKMN  187 (549)
T ss_pred             HHHHHHHCHHHHHHCHHHHHCHHHHH-HHHHHHHHHCCCCEEEEECCCCC---------------C-CHHHHHHHHHHHH
T ss_conf             99999856788873826340886899-99999998249999999462005---------------7-8999999999999


Q ss_pred             HHHCCCCCEEEEEEC
Q ss_conf             642017818999863
Q gi|255764460|r  188 SSISRSKCILVFINQ  202 (363)
Q Consensus       188 ~~~~k~~~~~i~iNQ  202 (363)
                      ... ..+.+++|+.|
T Consensus       188 ef~-e~gkTIvfVSH  201 (549)
T PRK13545        188 EFK-EQGKTIFFISH  201 (549)
T ss_pred             HHH-HCCCEEEEEEC
T ss_conf             999-78988999958


No 268
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.08  E-value=0.024  Score=34.42  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             726880799970687237899999987520089879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      =+|+|..+-|.||+||||||++--++.-.....|. ++||..
T Consensus       345 ~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~G~-I~idG~  385 (547)
T PRK10522        345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGK  385 (547)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
T ss_conf             98599889998999997799999982896699986-989999


No 269
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08  E-value=0.022  Score=34.60  Aligned_cols=39  Identities=23%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             972688079997068723789999998752008987999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      =-++.|.++-|.|+.|||||||+.++..-.....|.+.+
T Consensus        32 l~i~~Ge~~aIiG~nGsGKSTL~~~l~Gll~p~~G~v~~   70 (289)
T PRK13645         32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV   70 (289)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             898899899999999957999999996598899985999


No 270
>PHA02518 ParA-like protein; Provisional
Probab=97.07  E-value=0.0069  Score=37.83  Aligned_cols=86  Identities=16%  Similarity=0.192  Sum_probs=51.1

Q ss_pred             EEEEEECC-CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             79997068-72378999999875200898799997388556-68899819883344897258489999999999744897
Q gi|255764460|r   69 IVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV  146 (363)
Q Consensus        69 i~ei~G~~-~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~  146 (363)
                      |+-|+..- |+||||+|.++++.....|..|+.||+.-.-+ ..|++...-+...+...+.  ......-+..+  ...+
T Consensus         2 IIav~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~r~~~~~~~~~~~~--~~~~~~~l~~~--~~~y   77 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRM--GKSIRADLPKV--ASGY   77 (211)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHC--CHHHHHHHHHH--CCCC
T ss_conf             8999808999749999999999999789948999779996788999852268997401213--67799999974--0678


Q ss_pred             CEEEEECCCCCC
Q ss_conf             689981433322
Q gi|255764460|r  147 DIIVIDSVAALT  158 (363)
Q Consensus       147 ~liViDSi~al~  158 (363)
                      |+||||.-+++.
T Consensus        78 D~viID~pp~~~   89 (211)
T PHA02518         78 DYVVVDGAPQDS   89 (211)
T ss_pred             CEEEECCCCCCH
T ss_conf             889988999742


No 271
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=97.07  E-value=0.012  Score=36.29  Aligned_cols=40  Identities=30%  Similarity=0.470  Sum_probs=29.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf             72688079997068723789999998752008-9879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E  104 (363)
                      -++.|.++-+.||.+||||||. .+++...+. .|.+ ++|-+
T Consensus        25 ~i~~Gei~~liGpNGaGKSTLl-~~i~Gl~~~~~G~I-~i~g~   65 (241)
T PRK10895         25 TVNSGEIVGLLGPNGAGKTTTF-YMVVGIVPRDAGNI-IIDDE   65 (241)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCE
T ss_conf             9839979999889998699999-99967888887627-76345


No 272
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.07  E-value=0.0098  Score=36.87  Aligned_cols=36  Identities=39%  Similarity=0.562  Sum_probs=26.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEE
Q ss_conf             7268807999706872378999999875200-898799
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCA   99 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~   99 (363)
                      =++.|.++-|.||.+||||||+ .+++...+ ..|.+.
T Consensus        23 ~i~~Ge~~aliG~sGsGKSTLl-~~l~gl~~p~~G~i~   59 (248)
T PRK11264         23 EVKPGEVVAIIGPSGSGKTTLL-RCINLLEQPEAGTIR   59 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEE
T ss_conf             9879989999999998099999-999758999986799


No 273
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.06  E-value=0.0063  Score=38.10  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||.+||||||. .+++...+...--+++|.+.
T Consensus        41 ~I~~GE~~~llGpsGsGKSTll-r~i~Gl~~p~~G~I~i~G~d   82 (377)
T PRK11607         41 TIYKGEIFALLGASGCGKSTLL-RMLAGFEQPSAGQIMLDGVD   82 (377)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9999989999999984899999-99976999986599999999


No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=97.06  E-value=0.0054  Score=38.50  Aligned_cols=98  Identities=19%  Similarity=0.345  Sum_probs=70.0

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf             8972688079997068723789999998752008987999973885566-------889981988334489725848999
Q gi|255764460|r   61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQA  133 (363)
Q Consensus        61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~  133 (363)
                      -..-|.  ++.+.|--|+||||.--.++.-.+++|..|+. -+=.||+.       .|++|+||++=+=-.-..|.+--+
T Consensus        78 ~~~kp~--Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~l-aAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~  154 (284)
T TIGR00064        78 EEKKPN--VILFVGVNGVGKTTTIAKLANKLKKQGKSVLL-AAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVI  154 (284)
T ss_pred             CCCCCE--EEEEEEEECCCHHHHHHHHHHHHHHCCCEEEE-ECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHH
T ss_conf             478977--99998440886010288999999874990899-827524799999999989883875540788988717899


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf             99999997448976899814333220265
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVIDSVAALTPRAE  162 (363)
Q Consensus       134 ~~i~~~li~~~~~~liViDSi~al~p~~E  162 (363)
                      |+.++.-. +..+|++++|=.|=|..+..
T Consensus       155 fDAi~~Ak-~~niDvvliDTAGRLqnk~N  182 (284)
T TIGR00064       155 FDAIQAAK-ARNIDVVLIDTAGRLQNKVN  182 (284)
T ss_pred             HHHHHHHH-HCCCCEEEEECCCCCCCCHH
T ss_conf             99899998-74997899734754546620


No 275
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.06  E-value=0.00084  Score=43.61  Aligned_cols=42  Identities=29%  Similarity=0.536  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             268807999706872378999999875200898799997388556
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD  108 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~  108 (363)
                      +..|+=+-+.||.||||||||+|+++.-   +..|+||...+-|.
T Consensus        18 L~~G~PvHl~GPaG~GKT~LA~hvA~~r---~RPV~l~~Gd~eL~   59 (265)
T TIGR02640        18 LKSGYPVHLRGPAGTGKTTLAMHVARKR---DRPVVLINGDAELT   59 (265)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCC
T ss_conf             2278866744788855689999999736---89689986582326


No 276
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters.  PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06  E-value=0.0055  Score=38.45  Aligned_cols=31  Identities=29%  Similarity=0.452  Sum_probs=25.4

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             97268807999706872378999999875200
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK   93 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk   93 (363)
                      .-+++|.++-|-||.+||||||. .+++...+
T Consensus        28 ~~i~~Gei~~llG~nGsGKSTLl-~~l~G~~~   58 (202)
T cd03233          28 GVVKPGEMVLVLGRPGSGCSTLL-KALANRTE   58 (202)
T ss_pred             EEECCCEEEEEECCCCCCHHHHH-HHHHCCCC
T ss_conf             89809849999989999889999-99837878


No 277
>PRK10908 cell division protein FtsE; Provisional
Probab=97.06  E-value=0.0092  Score=37.05  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             726880799970687237899999987520089879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      -++.|.++-|.||.+||||||. .+++...+...--++++.+
T Consensus        24 ~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~   64 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTLL-KLICGIERPSAGKIWFSGH   64 (222)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf             9969989999999980799999-9996599998629999999


No 278
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.04  E-value=0.014  Score=35.82  Aligned_cols=41  Identities=32%  Similarity=0.464  Sum_probs=29.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             268807999706872378999999875200898799997388
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      ++.|.++-|.||.+||||||+ .+++...+...--+++|...
T Consensus        24 i~~Ge~~~liG~nGsGKSTll-~~i~Gl~~~~~G~i~~~G~~   64 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLL-RCINKLEEITSGDLIVDGLK   64 (240)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECCEE
T ss_conf             879989999999998099999-99963899999748789998


No 279
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.04  E-value=0.0017  Score=41.67  Aligned_cols=84  Identities=19%  Similarity=0.298  Sum_probs=51.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             88079997068723789999998752008987999973885566889981988334489725848999999999974489
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA  145 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~  145 (363)
                      .|.++=+.|.++|||||||-.+....++.|..++++|... +...+-..+|.+.+.    +-.++.-.-+++..|.++| 
T Consensus        23 kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~-lR~~l~~dlgfs~~d----R~~n~~r~~~lak~l~~~G-   96 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDN-VRHGLCSDLGFSDAD----RKENIRRVGEVAKLMVDAG-   96 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHH-HHHHHCCCCCCCHHH----HHHHHHHHHHHHHHHHHCC-
T ss_conf             9869998799999889999999999997599759977799-987436678989999----9999999999999998589-


Q ss_pred             CCEEEEECCCCC
Q ss_conf             768998143332
Q gi|255764460|r  146 VDIIVIDSVAAL  157 (363)
Q Consensus       146 ~~liViDSi~al  157 (363)
                        ++||-|+-+.
T Consensus        97 --~iVIvs~Isp  106 (198)
T PRK03846         97 --LVVLTAFISP  106 (198)
T ss_pred             --CEEEECCCCC
T ss_conf             --8366414788


No 280
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.04  E-value=0.022  Score=34.62  Aligned_cols=71  Identities=27%  Similarity=0.407  Sum_probs=44.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHH-HHHHCCC-----------HHHEEEEECC
Q ss_conf             726880799970687237899999987520089879999738--8556688-9981988-----------3344897258
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIY-ARKLGVD-----------LKNLLISQPD  128 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~-a~~~Gvd-----------~~~l~~~~~~  128 (363)
                      -+++|..+-|.|++||||||++-.++. .....|.+ +||..  ..++++. -+++|+=           -+|+.+..|+
T Consensus       372 ~i~~Ge~vaIVG~SGsGKSTl~~LL~g-~~p~~G~I-~i~g~di~~i~~~~lr~~i~~V~Q~~~LF~~TI~eNI~~g~~~  449 (588)
T PRK11174        372 TLPAGQRVALVGPSGAGKTSLLNALLG-FLPYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLFHGTLRDNVLLANPD  449 (588)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHH-HCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf             974997899989998649999999987-28988389-9999860308999999660351666777766299865335854


Q ss_pred             -CHHHHHH
Q ss_conf             -4899999
Q gi|255764460|r  129 -TGEQALE  135 (363)
Q Consensus       129 -~~E~~~~  135 (363)
                       +-|+..+
T Consensus       450 atdeei~~  457 (588)
T PRK11174        450 ASDEQLQQ  457 (588)
T ss_pred             CCHHHHHH
T ss_conf             33457999


No 281
>KOG0735 consensus
Probab=97.04  E-value=0.0099  Score=36.84  Aligned_cols=149  Identities=21%  Similarity=0.246  Sum_probs=81.1

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             9726880799970687237899999987520089-879999738855668899819883344897258489999999999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
                      -++..|.|. ++|+.|||||.|+-.++..+-|.. ..+.|+|.+ +++-...+++--++           +.++.   . 
T Consensus       427 pv~~~~~Il-l~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs-~l~~~~~e~iQk~l-----------~~vfs---e-  489 (952)
T KOG0735         427 PVFRHGNIL-LNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS-TLDGSSLEKIQKFL-----------NNVFS---E-  489 (952)
T ss_pred             CCCCCCCEE-EECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECH-HCCCHHHHHHHHHH-----------HHHHH---H-
T ss_conf             433466189-8679987776999999987515650699997522-10420489999999-----------99999---9-


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC--EEEEEECCCCCCCCC------C-
Q ss_conf             7448976899814333220265543455530224788876776777764201781--899986341145665------4-
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC--ILVFINQMRMKIGVM------F-  211 (363)
Q Consensus       141 i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~--~~i~iNQ~r~~ig~m------~-  211 (363)
                      .-.-+..+||+|-+..|....+-+    ..+-|.....|..|+..++..-.+.|.  ++|++-|.-..+.-.      | 
T Consensus       490 ~~~~~PSiIvLDdld~l~~~s~~e----~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq  565 (952)
T KOG0735         490 ALWYAPSIIVLDDLDCLASASSNE----NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQ  565 (952)
T ss_pred             HHHHCCCEEEECCHHHHHCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCHHHCCCCCEE
T ss_conf             886378089970503540568444----7730289999999999999998706857999985143420385334763147


Q ss_pred             -----CCCCCCCCCCCCCCCCCEEE
Q ss_conf             -----66512565531111112489
Q gi|255764460|r  212 -----GSPETTTGGNALKFYSSVRL  231 (363)
Q Consensus       212 -----g~p~~~~GG~al~~~aS~rl  231 (363)
                           .+|.++--+..|.|..|-++
T Consensus       566 ~~~~L~ap~~~~R~~IL~~~~s~~~  590 (952)
T KOG0735         566 IVIALPAPAVTRRKEILTTIFSKNL  590 (952)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             8881589235679999999997553


No 282
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids.  The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis.  YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein.  Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli.  The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.03  E-value=0.012  Score=36.32  Aligned_cols=71  Identities=24%  Similarity=0.266  Sum_probs=39.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC-CCCH-HHHHHHCC--CHHHEEEEECCCHHHHH
Q ss_conf             7268807999706872378999999875200898799997388-5566-88998198--83344897258489999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-ALDS-IYARKLGV--DLKNLLISQPDTGEQAL  134 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~-~~~~-~~a~~~Gv--d~~~l~~~~~~~~E~~~  134 (363)
                      -++.|.++-+.||.++||||+. .++....+...--++++... +-.| ....+.|+  -+...-++..-|+++-+
T Consensus        22 ~v~~Gei~~llGpNGAGKSTll-~~i~Gl~~p~~G~I~~~g~di~~~~~~~r~r~gig~~pQ~~~l~~~ltV~enl   96 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTF-YMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENI   96 (232)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCCCHHHHH
T ss_conf             9899959999999996199999-99977999986299999999999999999971979877777678888899999


No 283
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea.  This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily.  The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03  E-value=0.02  Score=34.93  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             2688079997068723789999998752008987999973885
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA  106 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~  106 (363)
                      ++.|.++-|.||++||||||. .+++...+...--+++|.+.-
T Consensus        47 i~~GE~~~ivG~SGsGKSTLL-r~i~GL~~p~~G~I~~~G~~i   88 (269)
T cd03294          47 VREGEIFVIMGLSGSGKSTLL-RCINRLIEPTSGKVLIDGQDI   88 (269)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEEC
T ss_conf             889999999989984899999-999759999975999999999


No 284
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction.  The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase).  A similar protein is also found in a few bacteria.
Probab=97.03  E-value=0.011  Score=36.57  Aligned_cols=118  Identities=22%  Similarity=0.334  Sum_probs=67.7

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCC-HHHHHHH-------
Q ss_conf             550147727899972389726880799970687237899999987520089879999-7388556-6889981-------
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALD-SIYARKL-------  115 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~-~~~a~~~-------  115 (363)
                      -+.+-||...+|.++.   +-+|.=..|+|+.++|||++. +.+++....+ .|+|+ -.|.+-. .+..+.+       
T Consensus       138 ~~PL~TGir~ID~l~P---ig~Gqr~~I~g~~g~GKT~l~-~~i~k~~~~d-v~Vyv~iGeRg~ev~e~l~~f~el~~~~  212 (369)
T cd01134         138 NEPLLTGQRVLDTLFP---VVKGGTAAIPGPFGCGKTVIQ-QSLSKYSNSD-IVIYVGCGERGNEMTEVLEEFPELTDPV  212 (369)
T ss_pred             CCCHHHHHHHHHHHCC---CCCCCEEEEECCCCCCHHHHH-HHHHHCCCCC-EEEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             9862653568874253---214764677668776899999-9998537998-8999997114189999999867741333


Q ss_pred             -CCC-HHH-EEEEECCC-----HH----HHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHH
Q ss_conf             -988-334-48972584-----89----999999999744897689981433322-026554345
Q gi|255764460|r  116 -GVD-LKN-LLISQPDT-----GE----QALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDM  167 (363)
Q Consensus       116 -Gvd-~~~-l~~~~~~~-----~E----~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~  167 (363)
                       |-. +++ ++++.+.+     .+    -+..++|-+-..|.--++++||++-.. ...|+-..+
T Consensus       213 ~g~~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l  277 (369)
T cd01134         213 TGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRL  277 (369)
T ss_pred             CCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             46641020368742777998899888989999999999689887998075899999988998863


No 285
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.02  E-value=0.006  Score=38.20  Aligned_cols=89  Identities=24%  Similarity=0.326  Sum_probs=56.0

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HH--CCCEEEEEECCCCCCHHHHHHHCC-----------CHHHEEE---
Q ss_conf             972688079997068723789999998752-00--898799997388556688998198-----------8334489---
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQS-QK--TGGTCAFVDAEHALDSIYARKLGV-----------DLKNLLI---  124 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk--~g~~~~~iD~E~~~~~~~a~~~Gv-----------d~~~l~~---  124 (363)
                      .|-+.+-+ -|||++|.|||-|. |.+++. .+  .+..|+|+.+|. |..++..++.-           +.|-|++   
T Consensus       141 pg~~yNPL-fIyG~~GlGKTHLl-~AIgn~~~~~~p~~~v~Y~tae~-F~~~~v~al~~~~~~~Fr~~yr~~DvLliDDi  217 (447)
T PRK00149        141 PGKAYNPL-FIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVSSEK-FTNDFVKALRNNAMEEFKEKYRSVDVLLIDDI  217 (447)
T ss_pred             CCCCCCCE-EEECCCCCCHHHHH-HHHHHHHHHHCCCCEEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHCCCEEEECHH
T ss_conf             67677855-89779988788999-99999999858997289954999-99999999851869999999972885432148


Q ss_pred             ----EECCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             ----72584899999999997448976899814
Q gi|255764460|r  125 ----SQPDTGEQALEITDMLVRSGAVDIIVIDS  153 (363)
Q Consensus       125 ----~~~~~~E~~~~i~~~li~~~~~~liViDS  153 (363)
                          -...|.|+.+.+.+.|...|.--++.-|-
T Consensus       218 qfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~  250 (447)
T PRK00149        218 QFLAGKEKTQEEFFHTFNALHENNKQIVITSDR  250 (447)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             886055779999999999999849968995788


No 286
>KOG0735 consensus
Probab=97.02  E-value=0.016  Score=35.50  Aligned_cols=122  Identities=20%  Similarity=0.275  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEE
Q ss_conf             14772789997238972688079997068723789999998752008987999973885566889981-98833448972
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQ  126 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~  126 (363)
                      .|+-.+.+=..+   +++...=+.+||||+||||.||-.++.++-     .-||..-+   |+...+. |          
T Consensus       685 ~P~kyp~if~~~---plr~~~giLLyGppGcGKT~la~a~a~~~~-----~~fisvKG---PElL~KyIG----------  743 (952)
T KOG0735         685 WPSKYPQIFANC---PLRLRTGILLYGPPGCGKTLLASAIASNSN-----LRFISVKG---PELLSKYIG----------  743 (952)
T ss_pred             CCCCCHHHHHHC---CCCCCCCEEEECCCCCCHHHHHHHHHHHCC-----EEEEEECC---HHHHHHHHC----------
T ss_conf             541036788608---866655458877999857888888885378-----05998258---899998745----------


Q ss_pred             CCCHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             584899999-9999974489768998143332202655434555302247888767767777642017818999
Q gi|255764460|r  127 PDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF  199 (363)
Q Consensus       127 ~~~~E~~~~-i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~  199 (363)
                        -.||... +.+ -.++-..+++++|-..++.|+.-.|.      -|.--|..+|+|..|-+.-+-.++.++.
T Consensus       744 --aSEq~vR~lF~-rA~~a~PCiLFFDEfdSiAPkRGhDs------TGVTDRVVNQlLTelDG~Egl~GV~i~a  808 (952)
T KOG0735         744 --ASEQNVRDLFE-RAQSAKPCILFFDEFDSIAPKRGHDS------TGVTDRVVNQLLTELDGAEGLDGVYILA  808 (952)
T ss_pred             --CCHHHHHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCC------CCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             --00788999999-86514974897121024376668777------7742999999987603633445389997


No 287
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02  E-value=0.015  Score=35.65  Aligned_cols=40  Identities=33%  Similarity=0.530  Sum_probs=27.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26880799970687237899999987520089879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|.++-|.||+||||||+. .+++...+...--++++.+
T Consensus        23 i~~Ge~~~iiG~SGsGKSTll-~~i~gL~~p~~G~I~~~g~   62 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLL-RLIVGLLRPDSGEVLIDGE   62 (235)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECCE
T ss_conf             879989999999997299999-9997599989858999999


No 288
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA).  This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life.  ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities.   To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates.  A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.02  E-value=0.012  Score=36.42  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=34.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             079997068723789999998752008987999973885
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA  106 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~  106 (363)
                      ||+-+.|--|.||||+|..++....+.|..++.+|+.-+
T Consensus         1 r~i~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDPa   39 (254)
T cd00550           1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA   39 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             989996898554899999999999968994999958986


No 289
>PRK13542 consensus
Probab=97.02  E-value=0.014  Score=35.95  Aligned_cols=54  Identities=24%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHC
Q ss_conf             9726880799970687237899999987520089879999738--855668899819
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIYARKLG  116 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~a~~~G  116 (363)
                      =-+++|.++-|.||.++|||||.-.++.-.+...|.+.| +.+  ..-++.+.++++
T Consensus        39 l~i~~Gei~~liGpNGaGKTTLlk~l~Gll~p~~G~I~~-~G~~i~~~~~~~~~~~~   94 (224)
T PRK13542         39 ISLAPGDLLQVMGPNGSGKTSLLRVLSGLMPPAEGDLYW-RGRAVRAGDPDYLQQLA   94 (224)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE-CCEECCCCCHHHHHHEE
T ss_conf             787599799999999999999999995797888528999-99999879988884447


No 290
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.00  E-value=0.022  Score=34.59  Aligned_cols=71  Identities=25%  Similarity=0.286  Sum_probs=41.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCC-CH-HHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf             726880799970687237899999987520-089879999738855-66-88998198833448972584899999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHAL-DS-IYARKLGVDLKNLLISQPDTGEQALE  135 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~-~~-~~a~~~Gvd~~~l~~~~~~~~E~~~~  135 (363)
                      -+++|.|+-+.||.++||||+. .+++... ...|.+ +|+..... ++ ...+.+|.-++...+...-++.+.+.
T Consensus        24 ~v~~Gei~gllGpNGAGKTTl~-~~l~Gl~~p~~G~i-~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~   97 (301)
T TIGR03522        24 EAQKGRIVGFLGPNGAGKSTTM-KIITGYLPPDSGSV-QVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQ   97 (301)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHH
T ss_conf             8859819999999998199999-99967956897779-99275134487999853767455565678889999999


No 291
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.00  E-value=0.0074  Score=37.65  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf             26880799970687237899999987520089--879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g--~~~~~iD~E  104 (363)
                      ++.|.++-|-||++||||||. .+++...+..  ---+++|.+
T Consensus        28 i~~GE~~~llGpSG~GKTTlL-r~iaGL~~p~~~~G~I~~~g~   69 (362)
T TIGR03258        28 IEAGELLALIGKSGCGKTTLL-RAIAGFVKAAGLTGRIAIADR   69 (362)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCCEEEEECCE
T ss_conf             999989999999974599999-999777677788179999999


No 292
>PRK13695 putative NTPase; Provisional
Probab=97.00  E-value=0.0055  Score=38.44  Aligned_cols=28  Identities=32%  Similarity=0.370  Sum_probs=23.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             9997068723789999998752008987
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGT   97 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~   97 (363)
                      +-|.|+|++||||+...++...+..|..
T Consensus         6 I~iTG~PGvGKTTli~Kv~~~L~~~g~~   33 (174)
T PRK13695          6 IGITGMPGVGKTTLVLKIAELLAREGYK   33 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             9987899988999999999998636961


No 293
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.99  E-value=0.01  Score=36.72  Aligned_cols=41  Identities=20%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             726880799970687237899999987520089879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      -++.|.++-|.||++||||||+ .+++...+...--+++|.+
T Consensus        26 ~i~~Ge~~~llGpsG~GKTTll-r~iaGl~~p~~G~I~~~g~   66 (358)
T PRK11650         26 DVADGEFIVLVGPSGCGKSTLL-RMVAGLERITSGEIWIGGR   66 (358)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf             9889989999999863699999-9997699988629999999


No 294
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.99  E-value=0.0098  Score=36.86  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             97268807999706872378999999875200898799997388
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      =-++.|.++-|.||++||||||. .++....+...-.++++.+.
T Consensus        22 l~i~~Ge~v~i~GpSGsGKSTLl-~~i~gl~~p~sG~i~i~g~~   64 (214)
T cd03292          22 ISISAGEFVFLVGPSGAGKSTLL-KLIYKEELPTSGTIRVNGQD   64 (214)
T ss_pred             EEECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             79859989999979995399999-99962989886499999999


No 295
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=96.99  E-value=0.0088  Score=37.17  Aligned_cols=90  Identities=22%  Similarity=0.328  Sum_probs=57.6

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC---CCHHHHHHHCCCHHHEE---EEECCCHHHHHHHHHHHHH
Q ss_conf             79997068723789999998752008987999973885---56688998198833448---9725848999999999974
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA---LDSIYARKLGVDLKNLL---ISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~---~~~~~a~~~Gvd~~~l~---~~~~~~~E~~~~i~~~li~  142 (363)
                      ++-|.|..+||||||..+++.. ++.|..++.|-.|.+   +|....++-|++.-.+-   ++ +....+....++.+.+
T Consensus         2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~g~~~iD~~ll~~~~~~v~el~~GciC-c~~~~d~~~~l~~l~~   79 (174)
T pfam02492         2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDFGETGIDAELLRETGAEIVELNNGCIC-CTIREDLSMVLEALLE   79 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCC-CCCCHHHHHHHHHHHH
T ss_conf             6999348878899999999984-4489847999933653020799987069618997488664-5433369999999985


Q ss_pred             --CCCCCEEEEECCCCCCCH
Q ss_conf             --489768998143332202
Q gi|255764460|r  143 --SGAVDIIVIDSVAALTPR  160 (363)
Q Consensus       143 --~~~~~liViDSi~al~p~  160 (363)
                        ....|.|+|-+.+...|.
T Consensus        80 ~~~~~~d~iiIE~sGla~p~   99 (174)
T pfam02492        80 LKLPRLDLLFIETTGLACPA   99 (174)
T ss_pred             CCCCCCCEEEEECCCCCCHH
T ss_conf             57899999999587667707


No 296
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP.  Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98  E-value=0.0063  Score=38.07  Aligned_cols=40  Identities=33%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26880799970687237899999987520089879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|.++-|.||++||||||. .+++...+...--++||..
T Consensus        21 i~~Ge~~~ilGpSGsGKSTLl-~li~Gl~~p~sG~I~i~G~   60 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLL-NLIAGFETPQSGRVLINGV   60 (211)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf             889989999999995599999-9997699988529999999


No 297
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.98  E-value=0.021  Score=34.73  Aligned_cols=53  Identities=30%  Similarity=0.535  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCC--CCCHHHHHHHCC
Q ss_conf             726880799970687237899999987520-0898799997388--556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEH--ALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~--~~~~~~a~~~Gv  117 (363)
                      -++.|.++-|.||.+||||||. .++.... ...|.+ +++.+.  ..++....+.|+
T Consensus        27 ~v~~Gei~~liGpnGaGKSTL~-~~i~Gl~~p~~G~I-~~~G~~i~~~~~~~~~r~g~   82 (255)
T PRK11300         27 EVREQEVVSLIGPNGAGKTTVF-NCLTGFYKPTGGTI-LLDGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEE-EECCEECCCCCHHHHHHCCC
T ss_conf             9899979999989996499999-99967988986089-99999888799999986682


No 298
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import.  Responsible for energy coupling to the transport system.  The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98  E-value=0.0082  Score=37.37  Aligned_cols=42  Identities=33%  Similarity=0.567  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||++||||||. .+++...+...--+++|-+.
T Consensus        24 ~v~~Ge~~~iiGpSGsGKSTll-~~i~Gl~~p~~G~I~~~g~~   65 (239)
T cd03296          24 DIPSGELVALLGPSGSGKTTLL-RLIAGLERPDSGTILFGGED   65 (239)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9889989999999997799999-99976999986399999999


No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.97  E-value=0.017  Score=35.34  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=25.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCE
Q ss_conf             7268807999706872378999999875-2008987
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGT   97 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~   97 (363)
                      -++.|.++-|.||.|||||||. .+++. .+...|.
T Consensus        46 ~i~~GEivgllG~NGaGKSTLl-k~I~Gl~~P~~G~   80 (264)
T PRK13546         46 KAYEGDVIGLVGINGSGKSTLS-NIIGGSLSPTVGK   80 (264)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCE
T ss_conf             8859989999989986199999-9996798888747


No 300
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=96.97  E-value=0.012  Score=36.24  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEE
Q ss_conf             726880799970687237899999987520089-87999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAF  100 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~  100 (363)
                      -++.|.++-+.||.++||||+. .++....+.. |.+.+
T Consensus        27 ~V~~Gei~gllGpNGAGKTTli-~~l~Gl~~p~sG~v~i   64 (304)
T PRK13537         27 HVQPGECFGLLGPNGAGKTTTL-KMLLGLTHPDAGTISL   64 (304)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEE
T ss_conf             8869959999999897299999-9997795689768999


No 301
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.97  E-value=0.012  Score=36.34  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEE
Q ss_conf             97268807999706872378999999875200-8987999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAF  100 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~  100 (363)
                      =-++.|.++-|.|+.|||||||. .+++...+ ..|.+.|
T Consensus        21 l~i~~G~i~~i~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~   59 (195)
T PRK13541         21 ITFLPSAITYIKGANGCGKSSLL-RMIAGIMQPSSGNIYY   59 (195)
T ss_pred             EEECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEE
T ss_conf             78779979999999998199999-9996798898408999


No 302
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.96  E-value=0.018  Score=35.25  Aligned_cols=113  Identities=24%  Similarity=0.322  Sum_probs=57.1

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHHHHHCCCH------HHEEEEECC------------CHH
Q ss_conf             997068723789999998752008987-9999738855668899819883------344897258------------489
Q gi|255764460|r   71 EIYGPESSGKTTLALHTIAQSQKTGGT-CAFVDAEHALDSIYARKLGVDL------KNLLISQPD------------TGE  131 (363)
Q Consensus        71 ei~G~~~sGKTtlal~~~a~~qk~g~~-~~~iD~E~~~~~~~a~~~Gvd~------~~l~~~~~~------------~~E  131 (363)
                      -|.|+|++|||||+..++...+..|.. +=|+.-|..-+   -++.|.+.      .+...++.+            ..+
T Consensus         3 ~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~---g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~   79 (168)
T pfam03266         3 FITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREG---GRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLE   79 (168)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECC---CCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHH
T ss_conf             997899988999999999999867970748993021258---93789999990478267744406887754577166689


Q ss_pred             HHHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             999999999744--89768998143332202655434555302247888767767777642017818999863411
Q gi|255764460|r  132 QALEITDMLVRS--GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       132 ~~~~i~~~li~~--~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      ..-.++-.+++.  ..-+++|+|=++.|    |+.           +   ..|.+.+-..+. ++.+++++=|.+.
T Consensus        80 ~fe~~~~~~L~~a~~~~dlivIDEIG~m----El~-----------s---~~F~~~v~~~l~-~~~~vl~ti~~~~  136 (168)
T pfam03266        80 EFEEIALPALRRALEEADLIIIDEIGPM----ELK-----------S---PKFREAIEEVLS-SNKPVLAVVHRRS  136 (168)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCHH----HHH-----------H---HHHHHHHHHHHC-CCCCEEEEEEECC
T ss_conf             9999999999840668989999763145----331-----------4---999999999966-9997999997258


No 303
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.95  E-value=0.014  Score=35.84  Aligned_cols=71  Identities=28%  Similarity=0.391  Sum_probs=52.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CHHHH-HHHCCCHHHE-EEEECCCHHHHHH
Q ss_conf             726880799970687237899999987520089879999738855-66889-9819883344-8972584899999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-DSIYA-RKLGVDLKNL-LISQPDTGEQALE  135 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~-~~~~a-~~~Gvd~~~l-~~~~~~~~E~~~~  135 (363)
                      -...|+|+-+.||.++||||+ |.++|..-...--+++||.=++. +|..+ +++||-.... +|.+ -|++|-+.
T Consensus        24 ~ae~Gei~GlLG~NGAGKTT~-LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~R-lT~rEnl~   97 (245)
T COG4555          24 EAEEGEITGLLGENGAGKTTL-LRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYAR-LTARENLK   97 (245)
T ss_pred             EECCCEEEEEECCCCCCCHHH-HHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCEECCCCCHHHH-HHHHHHHH
T ss_conf             850664999876898871237-999998325888649984002101718775202131377670355-30899999


No 304
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95  E-value=0.017  Score=35.28  Aligned_cols=37  Identities=30%  Similarity=0.539  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEE
Q ss_conf             726880799970687237899999987520-08987999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAF  100 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~  100 (363)
                      -++.|.++-|.||.+||||||. .+++... ...|.+.|
T Consensus        23 ~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~   60 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLL-RILAGLARPDAGEVLW   60 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEE
T ss_conf             9879989999999998599999-9997688888737999


No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.94  E-value=0.026  Score=34.20  Aligned_cols=28  Identities=25%  Similarity=0.519  Sum_probs=23.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQS   91 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~   91 (363)
                      =++.|.++-+.|+.+||||||+ .+++..
T Consensus        22 ~i~~Gei~~LvG~sGsGKSTL~-~~l~Gl   49 (520)
T TIGR03269        22 TIEEGEVLGILGRSGAGKSVLM-HVLRGM   49 (520)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCC
T ss_conf             9999989999999996999999-999651


No 306
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.93  E-value=0.0061  Score=38.18  Aligned_cols=41  Identities=32%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             726880799970687237899999987520089879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      -++.|.++-|.||++||||||. .+++...+...--++++.+
T Consensus        24 ~i~~GE~~~llGpSGsGKSTLl-r~iaGL~~p~sG~I~~~G~   64 (352)
T PRK10851         24 DIPSGQMVALLGPSGSGKTTLL-RIIAGLEHQTSGHIRFHGT   64 (352)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf             9999989999999984699999-9997699999569999999


No 307
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.93  E-value=0.0085  Score=37.25  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||++|||||+. .++|...+...--+++|.+.
T Consensus        26 ~v~~Ge~~~llGpSG~GKtTlL-r~iaGl~~p~~G~I~~~g~~   67 (353)
T TIGR03265        26 SVKKGEFVCLLGPSGCGKTTLL-RIIAGLERQTAGTIYQGGRD   67 (353)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9989999999999953599999-99976999987399999999


No 308
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.93  E-value=0.016  Score=35.57  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=29.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||.+||||||.-.++.......|.+ ++|.+.
T Consensus        27 ~i~~Gei~~liG~NGaGKSTLl~~i~G~~~~~~G~I-~~~G~~   68 (237)
T PRK11614         27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKD   68 (237)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCEE
T ss_conf             986997999987999759999999967998896289-999998


No 309
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.93  E-value=0.0025  Score=40.66  Aligned_cols=81  Identities=19%  Similarity=0.120  Sum_probs=45.5

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECC--CHHHHHHHHHHHHHCCCC
Q ss_conf             799970687237899999987520089879999738855668899819883344897258--489999999999744897
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD--TGEQALEITDMLVRSGAV  146 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~--~~E~~~~i~~~li~~~~~  146 (363)
                      ++-|.|+++|||||+|-.+.....+.|..|+.|...+-+.+.+.++.    ++.-+-.|+  ..+...+.+..|.+...+
T Consensus         1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~~~~~~~----~~~n~D~p~a~d~~ll~~~L~~L~~g~~v   76 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRD----EDGNYDFESILDLDLLNKNLHDLLNGKEV   76 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             98998989778999999999998464885399954666457652000----14688981353499999999999779955


Q ss_pred             CEEEEEC
Q ss_conf             6899814
Q gi|255764460|r  147 DIIVIDS  153 (363)
Q Consensus       147 ~liViDS  153 (363)
                      .+-+.|=
T Consensus        77 ~~P~YDf   83 (179)
T cd02028          77 ELPIYDF   83 (179)
T ss_pred             EEEEEEC
T ss_conf             7542004


No 310
>KOG0054 consensus
Probab=96.92  E-value=0.017  Score=35.37  Aligned_cols=124  Identities=19%  Similarity=0.381  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC------EEEEEECC---------------CCCCHHH----HHHHCC
Q ss_conf             7268807999706872378999999875200898------79999738---------------8556688----998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG------TCAFVDAE---------------HALDSIY----ARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~------~~~~iD~E---------------~~~~~~~----a~~~Gv  117 (363)
                      =+|+|.++-|.|+.|||||+|...++.+.++.-|      ..+|.--+               ..+|+++    .+++.+
T Consensus       543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L  622 (1381)
T KOG0054         543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACAL  622 (1381)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf             96289889998999888899999996587556755998474898666556417856675006870359999999997067


Q ss_pred             CHHHEEEEECC-----------CHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             83344897258-----------489--99999999974489768998143332202655434555302247888767767
Q gi|255764460|r  118 DLKNLLISQPD-----------TGE--QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR  184 (363)
Q Consensus       118 d~~~l~~~~~~-----------~~E--~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lr  184 (363)
                      +.|==+.-.-|           ++-  |-..++..+-+.  -|+..+|-.=+.+          |+|+|.+  ++.+   
T Consensus       623 ~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~--adIYLLDDplSAV----------Dahvg~~--if~~---  685 (1381)
T KOG0054         623 KKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD--ADIYLLDDPLSAV----------DAHVGKH--IFEE---  685 (1381)
T ss_pred             HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEECCCCHHH----------HHHHHHH--HHHH---
T ss_conf             767974689875357788627767699999999998657--9989887963224----------0776699--9999---


Q ss_pred             HHHHHHCCCCCEEEEEECCC
Q ss_conf             77764201781899986341
Q gi|255764460|r  185 KLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       185 kl~~~~~k~~~~~i~iNQ~r  204 (363)
                       .....-+.+|.+++|||+.
T Consensus       686 -ci~~~L~~KT~ILVTHql~  704 (1381)
T KOG0054         686 -CIRGLLRGKTVILVTHQLQ  704 (1381)
T ss_pred             -HHHHHHCCCEEEEEECCHH
T ss_conf             -9987645988999847166


No 311
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.92  E-value=0.015  Score=35.79  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=28.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf             726880799970687237899999987520089-879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E  104 (363)
                      -+++|.|+-+-||.++||||+. .++....+.. |.+ +|+..
T Consensus        29 ~v~~Gei~gllGpNGAGKSTli-~~l~Gl~~p~sG~i-~i~G~   69 (306)
T PRK13536         29 TVASGECFGLLGPNGAGKSTIA-RMILGMTSPDAGKI-TVLGV   69 (306)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCE
T ss_conf             8859969999999898099999-99967957898779-99987


No 312
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK.  ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles.  ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP.  In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.92  E-value=0.011  Score=36.61  Aligned_cols=42  Identities=24%  Similarity=0.418  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||++||||||. .+++...+...-.+++|.+.
T Consensus        22 ~v~~Ge~~~i~GpSG~GKSTlL-r~iaGl~~p~~G~I~~~g~~   63 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTL-RMIAGLEEPTSGRIYIGGRD   63 (213)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9869989999999988099999-99976999986399999999


No 313
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=96.91  E-value=0.0013  Score=42.38  Aligned_cols=135  Identities=18%  Similarity=0.184  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCHHHHH---HHCCCCCCCCCEEEEEECCCCHH
Q ss_conf             54167699999999-999867618873797036655334-65501477278999---72389726880799970687237
Q gi|255764460|r    6 EMNIVDKSKALEAA-LSQIQRVYGKGAIMQLGSQGSIFE-GIEVVSSGSLGLDI---ALGIGGFPKGRIVEIYGPESSGK   80 (363)
Q Consensus         6 ~~~~~~k~~~l~~~-~~~i~k~~g~~~~~~lg~~~~~~~-~~~~i~TG~~~lD~---~Lg~GG~p~Gri~ei~G~~~sGK   80 (363)
                      ...-.+|+|.|+.+ .+.|=+         | .++.+.. .-..+||....++-   -+ .-|  +-.++.+.|.=||||
T Consensus        68 ~~~g~nKRk~iq~~vF~EL~~---------L-vDp~~~APkPkklststktinGkk~~p-~Kg--k~~ViMfVGLQGaGK  134 (453)
T TIGR01425        68 LASGLNKRKLIQKAVFEELCN---------L-VDPGVEAPKPKKLSTSTKTINGKKFTP-KKG--KSSVIMFVGLQGAGK  134 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------H-CCCCCCCCCCCCCCCCCEEECCCEEEC-CCC--CCEEEEEEECCCCCH
T ss_conf             210324789999989999897---------6-086323468753332110103503411-568--821588862148871


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHH--EE----EEECCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             89999998752008987999973885566889981988334--48----9725848999999999974489768998143
Q gi|255764460|r   81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--LL----ISQPDTGEQALEITDMLVRSGAVDIIVIDSV  154 (363)
Q Consensus        81 Ttlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~--l~----~~~~~~~E~~~~i~~~li~~~~~~liViDSi  154 (363)
                      ||.|..++.=.|+.|.++..|-+. ||+..-.++|=-+-.+  +-    |.+||=+--|+|=++.+- .+..|+||||-=
T Consensus       135 TTtctKLA~YYk~rGfK~~lvCAD-TFRAGAFdQLkqNA~kA~iPFYGsy~E~DPVkiA~EGv~~Fk-~E~~diIivDTS  212 (453)
T TIGR01425       135 TTTCTKLAYYYKRRGFKPALVCAD-TFRAGAFDQLKQNATKAKIPFYGSYLESDPVKIASEGVEKFK-KEKFDIIIVDTS  212 (453)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCC-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHH-CCCCCEEEEECC
T ss_conf             566878777763266432565177-542324899987476448971201048987078002011322-127847998379


Q ss_pred             C
Q ss_conf             3
Q gi|255764460|r  155 A  155 (363)
Q Consensus       155 ~  155 (363)
                      +
T Consensus       213 G  213 (453)
T TIGR01425       213 G  213 (453)
T ss_pred             C
T ss_conf             8


No 314
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component.  Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems.  The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions.  The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.91  E-value=0.012  Score=36.34  Aligned_cols=121  Identities=21%  Similarity=0.367  Sum_probs=58.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-H-CCCEEEEEECCCCCC--HHHHHHHCCC--H-----------HHEEEE
Q ss_conf             726880799970687237899999987520-0-898799997388556--6889981988--3-----------344897
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-K-TGGTCAFVDAEHALD--SIYARKLGVD--L-----------KNLLIS  125 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k-~g~~~~~iD~E~~~~--~~~a~~~Gvd--~-----------~~l~~~  125 (363)
                      =++.|.++-|-||.+||||||.-.++...+ + ..|.+ ++|.+.-.+  +....+.|+-  .           ..++-.
T Consensus        22 ~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I-~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~  100 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI-LFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY  100 (200)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEE-EECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHH
T ss_conf             88799899999689999999999970777778520079-99999988699999997694896367687079849999976


Q ss_pred             EC---CCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             25---8489-9999999997448976899814333220265543455530224788876776777764201781899986
Q gi|255764460|r  126 QP---DTGE-QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN  201 (363)
Q Consensus       126 ~~---~~~E-~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iN  201 (363)
                      -.   .-+| |-+.++..|+..  .+++++|=-.+     -+|           ...... +..+...+.+.++++|++.
T Consensus       101 ~~~~LSGGekqrv~iaral~~~--P~lllLDEPts-----gLD-----------~~~~~~-i~~~i~~l~~~g~tiiiit  161 (200)
T cd03217         101 VNEGFSGGEKKRNEILQLLLLE--PDLAILDEPDS-----GLD-----------IDALRL-VAEVINKLREEGKSVLIIT  161 (200)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCC-----CCC-----------HHHHHH-HHHHHHHHHHCCCEEEEEE
T ss_conf             4636799999999999999609--99999969622-----699-----------999999-9999999985799999999


Q ss_pred             CC
Q ss_conf             34
Q gi|255764460|r  202 QM  203 (363)
Q Consensus       202 Q~  203 (363)
                      |-
T Consensus       162 H~  163 (200)
T cd03217         162 HY  163 (200)
T ss_pred             EC
T ss_conf             63


No 315
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.91  E-value=0.032  Score=33.64  Aligned_cols=55  Identities=11%  Similarity=0.157  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             9999999997448976899814333220265543455530224788876776777764201781899986341
Q gi|255764460|r  132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       132 ~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                      |-+.|+..|+..  .+++|.|=-++.     +|-       .....+    +..+...+.+.++++|++.|--
T Consensus       175 Qrv~IA~aL~~~--P~lLilDEPTa~-----LD~-------~~~~~l----~~~l~~l~~~~g~tii~isH~l  229 (520)
T TIGR03269       175 QRVVLARQLAKE--PFLFLADEPTGT-----LDP-------QTAKLV----HNALEEAVKASGISMVLTSHWP  229 (520)
T ss_pred             HHHHHHHHHHCC--CCEEEEECCCCC-----CCH-------HHHHHH----HHHHHHHHHHHCCEEEEECCCH
T ss_conf             889999998459--989997076335-----799-------999999----9999999998396599974869


No 316
>PRK13768 GTPase; Provisional
Probab=96.90  E-value=0.0043  Score=39.13  Aligned_cols=36  Identities=33%  Similarity=0.328  Sum_probs=28.1

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             799970687237899999987520089879999738
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ..-+.||+||||||+|-.+-.-....|..+..|.-.
T Consensus         4 ~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLD   39 (253)
T PRK13768          4 IVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLD   39 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             899989999988999999999999769975999789


No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.89  E-value=0.019  Score=35.11  Aligned_cols=32  Identities=19%  Similarity=0.224  Sum_probs=19.5

Q ss_pred             HHHHHHHHCCCCCEEEEEECC-------CCCCCCCCCCC
Q ss_conf             677776420178189998634-------11456654665
Q gi|255764460|r  183 LRKLTSSISRSKCILVFINQM-------RMKIGVMFGSP  214 (363)
Q Consensus       183 lrkl~~~~~k~~~~~i~iNQ~-------r~~ig~m~g~p  214 (363)
                      |..|.....+.++++|||.|-       -+.+.+||...
T Consensus       194 L~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~  232 (539)
T COG1123         194 LDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE  232 (539)
T ss_pred             HHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf             999999999709489998689999997537699998878


No 318
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.89  E-value=0.014  Score=35.84  Aligned_cols=39  Identities=26%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             799970687237899999987520089879999738855
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL  107 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~  107 (363)
                      |+-..|.-+.||||++..+.....++|..++.+|..-.+
T Consensus         2 i~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g~   40 (139)
T cd02038           2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL   40 (139)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             899649999839999999999999789969999898999


No 319
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.88  E-value=0.0071  Score=37.76  Aligned_cols=78  Identities=22%  Similarity=0.367  Sum_probs=52.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHH
Q ss_conf             97268807999706872378999999875200898799997388556688998198833448972584899999999997
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV  141 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li  141 (363)
                      |+..+| + -+||++|+|||+|+-.++-+..+.|..++|+-     -|+++..+-    .-+  ..++.++.++   .+ 
T Consensus       154 ~~~~kG-l-yl~G~~G~GKTyL~~aian~La~~g~~v~~v~-----~p~~~~~lK----~s~--~d~s~~~~i~---~~-  216 (306)
T PRK08939        154 GEKVKG-L-YLYGDFGVGKTYLLAAIANELAKKGVSSTLVH-----FPEFIRELK----NAI--SDGSVKEKID---AV-  216 (306)
T ss_pred             CCCCCE-E-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHH----HHH--CCCCHHHHHH---HH-
T ss_conf             988877-8-89899999899999999999998699299987-----599999999----986--4898899999---98-


Q ss_pred             HCCCCCEEEEECCCCCC
Q ss_conf             44897689981433322
Q gi|255764460|r  142 RSGAVDIIVIDSVAALT  158 (363)
Q Consensus       142 ~~~~~~liViDSi~al~  158 (363)
                      +  ..+++|+|-+||=.
T Consensus       217 k--~~~vLiLDDiGaE~  231 (306)
T PRK08939        217 K--EAPVLMLDDIGAEQ  231 (306)
T ss_pred             H--CCCEEEEECCCCCC
T ss_conf             4--49989984446542


No 320
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88  E-value=0.0017  Score=41.75  Aligned_cols=81  Identities=23%  Similarity=0.332  Sum_probs=51.9

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHH---HHHHHHHH
Q ss_conf             688079997068723789999998752008987999973885566889981988334489725848999---99999997
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA---LEITDMLV  141 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~---~~i~~~li  141 (363)
                      +.|.++=+.|.++|||||+|-.+....++.|..++++|... +.. .....|       |...+-.|.+   -.++..|.
T Consensus         5 ~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~-lR~-~~~~~g-------fs~~~R~~n~~r~~~lak~l~   75 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LRE-IFGHSG-------YDKESRIEMALKRAKLAAFLA   75 (176)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH-HHH-HHCCCC-------CCHHHHHHHHHHHHHHHHHHH
T ss_conf             88679997899999899999999999997599779988689-998-736589-------899999999999999999986


Q ss_pred             HCCCCCEEEEECCCCC
Q ss_conf             4489768998143332
Q gi|255764460|r  142 RSGAVDIIVIDSVAAL  157 (363)
Q Consensus       142 ~~~~~~liViDSi~al  157 (363)
                      ++   +++||=|+-++
T Consensus        76 ~~---g~~vIvs~isp   88 (176)
T PRK05541         76 DQ---GMIVIVTTISM   88 (176)
T ss_pred             HC---CCCEEEEECCC
T ss_conf             46---98036752279


No 321
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component.  The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88  E-value=0.019  Score=35.03  Aligned_cols=71  Identities=21%  Similarity=0.307  Sum_probs=39.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CH-HHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf             726880799970687237899999987520089879999738855-66-88998198833448972584899999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-DS-IYARKLGVDLKNLLISQPDTGEQALE  135 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~-~~-~~a~~~Gvd~~~l~~~~~~~~E~~~~  135 (363)
                      -+++| ++-+-||.++||||+. .+++...+...--++|+..... ++ .+.+++|.=+....+...-|++|.+.
T Consensus        22 ~i~~G-i~gllGpNGAGKSTll-~~i~Gl~~p~sG~i~i~g~~~~~~~~~~~~~iG~vpq~~~l~~~ltv~e~l~   94 (211)
T cd03264          22 TLGPG-MYGLLGPNGAGKTTLM-RILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD   94 (211)
T ss_pred             EECCC-EEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHHHH
T ss_conf             88897-5999999982399999-9997596689629999999966188989730799757776898987999999


No 322
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport.  Other members of this system include the MetP permease and  the MetQ substrate binding protein.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86  E-value=0.021  Score=34.78  Aligned_cols=40  Identities=35%  Similarity=0.586  Sum_probs=28.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf             72688079997068723789999998752008-9879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E  104 (363)
                      -++.|.++-|.||++||||||+ .++....+. .|.+. ++..
T Consensus        27 ~i~~Ge~~~ivG~SGsGKSTll-r~i~gL~~p~sG~I~-~~g~   67 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLI-RCINGLERPTSGSVL-VDGT   67 (233)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEE-ECCE
T ss_conf             9999999999889805899999-999679999980899-9999


No 323
>PRK08233 hypothetical protein; Provisional
Probab=96.86  E-value=0.011  Score=36.57  Aligned_cols=83  Identities=19%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC-CCCHHHHHHH---CCCHHHEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             07999706872378999999875200898799997388-5566889981---9883344897258489999999999744
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-ALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRS  143 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~-~~~~~~a~~~---Gvd~~~l~~~~~~~~E~~~~i~~~li~~  143 (363)
                      .|+-|+|.++|||||+|-.++.+..  +..++++|.=+ ...|+-...+   +.|.+.     .+ .+...+-+..+...
T Consensus         4 ~IIgIaGgSgSGKTtla~~l~~~l~--~~~~~~~D~y~~~~~~~~~~~~~~~~~~~d~-----~d-~~~l~~~l~~l~~~   75 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWIDDGANYSE-----WV-LTPLIKDIQELIAK   75 (182)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCCCCCH-----HH-HHHHHHHHHHHHCC
T ss_conf             8999968886789999999999746--7758996665554687889987406778666-----66-99999999998559


Q ss_pred             CCCCEEEEECCCCCC
Q ss_conf             897689981433322
Q gi|255764460|r  144 GAVDIIVIDSVAALT  158 (363)
Q Consensus       144 ~~~~liViDSi~al~  158 (363)
                      ..+++||+|-+=++.
T Consensus        76 ~~~d~iIvEgil~l~   90 (182)
T PRK08233         76 SNVDYIIVDYPFAYL   90 (182)
T ss_pred             CCCCEEEEEEEHHHC
T ss_conf             987289996443626


No 324
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.83  E-value=0.0031  Score=40.07  Aligned_cols=78  Identities=21%  Similarity=0.358  Sum_probs=46.4

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             79997068723789999998752008987999973885566889981988334489725848999999999974489768
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI  148 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~l  148 (363)
                      |+=+.|.++|||||+|-.+....++.+..++++|... +...+-..+|.+.+.    +..+..-...++..|.++|   +
T Consensus         1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~-iR~~l~~~lgys~~~----R~~n~~r~~~lak~l~~qg---~   72 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN-VRHGLNKDLGFSRED----REENIRRIAEVAKLLADAG---L   72 (149)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH-HHHHHCCCCCCCHHH----HHHHHHHHHHHHHHHHHCC---C
T ss_conf             9898799999999999999999998699759977488-997736555988788----9999999999999998379---8


Q ss_pred             EEEECC
Q ss_conf             998143
Q gi|255764460|r  149 IVIDSV  154 (363)
Q Consensus       149 iViDSi  154 (363)
                      +||=|.
T Consensus        73 ~VIvs~   78 (149)
T cd02027          73 IVIAAF   78 (149)
T ss_pred             EEEEEC
T ss_conf             278841


No 325
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=96.83  E-value=0.006  Score=38.23  Aligned_cols=86  Identities=19%  Similarity=0.276  Sum_probs=51.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCHHHHHH------------H-CCC---HHHEE
Q ss_conf             97268807999706872378999999875200--898799997388556688998------------1-988---33448
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TGGTCAFVDAEHALDSIYARK------------L-GVD---LKNLL  123 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk--~g~~~~~iD~E~~~~~~~a~~------------~-Gvd---~~~l~  123 (363)
                      .|.+.+-+. |||++|+|||.|+-.++.++++  .+..++|+++|.-. ..+...            + .+|   +|++-
T Consensus        30 ~~~~~npl~-i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~-~~~~~~l~~~~~~~f~~~l~~~d~l~iDDi~  107 (219)
T pfam00308        30 PGKAYNPLF-IYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFL-NDFVDALRDNKIEAFKKSYRNVDLLLIDDIQ  107 (219)
T ss_pred             CCCCCCCEE-EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHCCHH
T ss_conf             587678269-98899998889999999999984999828884399999-9889999818888999997632336522367


Q ss_pred             E--EECCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             9--72584899999999997448976899
Q gi|255764460|r  124 I--SQPDTGEQALEITDMLVRSGAVDIIV  150 (363)
Q Consensus       124 ~--~~~~~~E~~~~i~~~li~~~~~~liV  150 (363)
                      .  -++.+-|+.+++++.+..++. .+++
T Consensus       108 ~l~~~~~~ee~lf~l~N~~~~~~~-~lll  135 (219)
T pfam00308       108 FLAGKEKTQEEFFHTFNALHENNK-QIVL  135 (219)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHCCC-EEEE
T ss_conf             656864789999999999997298-6999


No 326
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=96.83  E-value=0.0054  Score=38.52  Aligned_cols=80  Identities=33%  Similarity=0.393  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEECCC---CCC------HHHHHHHCCCHHH--EEEEEC---C--CHHHH----HH-
Q ss_conf             72378999999875200898799997388---556------6889981988334--489725---8--48999----99-
Q gi|255764460|r   77 SSGKTTLALHTIAQSQKTGGTCAFVDAEH---ALD------SIYARKLGVDLKN--LLISQP---D--TGEQA----LE-  135 (363)
Q Consensus        77 ~sGKTtlal~~~a~~qk~g~~~~~iD~E~---~~~------~~~a~~~Gvd~~~--l~~~~~---~--~~E~~----~~-  135 (363)
                      |+||||.|+|+++....+|..|+.||..-   ++.      ..|+++.|+++..  ....++   .  ..|..    +. 
T Consensus        11 GvGKTTtavnLA~aLA~~G~rVllIDlDpqq~slt~~l~nr~~~~~~~~~~l~~P~~~~l~~~~~~~~~~~~~~~~~L~~   90 (261)
T pfam09140        11 GSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLTRYIENRAATAERTGLDLPVPKHLCLPDDVSEVFDGESADDARLEE   90 (261)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             87299999999999998899789997999998512344303556551386534665344550677761345578999999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             99999744897689981433322
Q gi|255764460|r  136 ITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       136 i~~~li~~~~~~liViDSi~al~  158 (363)
                      .+..+  ...+|.||||.=+++.
T Consensus        91 al~~l--~~~yDfIlIDcPPsl~  111 (261)
T pfam09140        91 AVADL--EQDADFIVIDTPGSDS  111 (261)
T ss_pred             HHHHH--HCCCCEEEEECCCCCC
T ss_conf             99998--7579999996998573


No 327
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=96.82  E-value=0.015  Score=35.67  Aligned_cols=119  Identities=24%  Similarity=0.297  Sum_probs=68.6

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHC------------------------CCEEEEEECCCCCCHHHH-H-HHCC-
Q ss_conf             688079997068723789999998752008------------------------987999973885566889-9-8198-
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQKT------------------------GGTCAFVDAEHALDSIYA-R-KLGV-  117 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk~------------------------g~~~~~iD~E~~~~~~~a-~-~~Gv-  117 (363)
                      ..|--+-+-|-+||||||||=-++.=..-.                        +--.+|=|+=++++|..- + -+|- 
T Consensus        36 ~~Ge~~gLLG~SG~GKSTLArlLlGLe~P~~G~v~F~G~dl~~L~~~~~rafrR~vQlvFQD~~savNPr~tv~~ii~EP  115 (267)
T TIGR02769        36 EEGETVGLLGRSGCGKSTLARLLLGLEKPAQGEVSFRGQDLSKLDRKQRRAFRRDVQLVFQDSPSAVNPRKTVREIIGEP  115 (267)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHCCHHHCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             37750552367887377899998750788874047625645550811021112136789874743116257899998625


Q ss_pred             -------------------------CHHHEEEEECC-CHH--HHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHH
Q ss_conf             -------------------------83344897258-489--999999999744897689981-4333220265543455
Q gi|255764460|r  118 -------------------------DLKNLLISQPD-TGE--QALEITDMLVRSGAVDIIVID-SVAALTPRAEIEGDMG  168 (363)
Q Consensus       118 -------------------------d~~~l~~~~~~-~~E--~~~~i~~~li~~~~~~liViD-Si~al~p~~Eie~~~~  168 (363)
                                               +.+.+==.++. ++=  |-..|+..|.-  ...|||+| ||++|           
T Consensus       116 Lrhl~~L~~s~~~~r~~~LL~~v~L~~~~~~k~P~qlSGGQLQRiniARALA~--~PkLivLDEavSnL-----------  182 (267)
T TIGR02769       116 LRHLTSLDESERKARIAELLELVGLRSEVADKLPRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNL-----------  182 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEHHHHHHH-----------
T ss_conf             77665488999999999999860889679842870005746899999999730--89737532225576-----------


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             5302247888767767777642017818999863
Q gi|255764460|r  169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQ  202 (363)
Q Consensus       169 d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ  202 (363)
                      |  +-+|+.+    |+.|...-...+++++||.|
T Consensus       183 D--~~lQ~~i----L~lL~~L~q~~G~aylfitH  210 (267)
T TIGR02769       183 D--LVLQAVI----LELLKKLQQEFGTAYLFITH  210 (267)
T ss_pred             H--HHHHHHH----HHHHHHHHHHHCCEEEHHHH
T ss_conf             7--9999999----99999998700955413564


No 328
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=96.82  E-value=0.0093  Score=37.01  Aligned_cols=88  Identities=22%  Similarity=0.377  Sum_probs=53.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHCCCH------HHEEEEECCC----------
Q ss_conf             0799970687237899999987520089879999738--855668899819883------3448972584----------
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIYARKLGVDL------KNLLISQPDT----------  129 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~a~~~Gvd~------~~l~~~~~~~----------  129 (363)
                      |++-+.|.-|.||||+|-.++..+.+.|..++.+.+.  |++.-.+-..+|-++      ++|...+.|.          
T Consensus         2 r~i~~~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStDPAhsL~D~~~~~~g~~pt~V~~~~nL~a~eiD~~~~~~~~~~~   81 (304)
T pfam02374         2 RWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDPAHSLSDSFNQKFGHEPTKIKGVENLSAMEIDPQMELEEYRGE   81 (304)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEECHHHHHHHHHHH
T ss_conf             19999579857489999999999995899299994697214889848867999615158898279872789999999999


Q ss_pred             ---------------------------HHH--HHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             ---------------------------899--99999999744897689981433
Q gi|255764460|r  130 ---------------------------GEQ--ALEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       130 ---------------------------~E~--~~~i~~~li~~~~~~liViDSi~  155 (363)
                                                 .+|  +++-+-.+++++.+|+||+|.-.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~al~~i~~~~~~~~yD~VV~DtaP  136 (304)
T pfam02374        82 VQDPINAVLGADMLEGILAEELSSLPGIDEIASFDEFKKYMDEGEYDVVIFDTAP  136 (304)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             9999986512212667899998369989999999999999971788769966898


No 329
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.82  E-value=0.012  Score=36.37  Aligned_cols=89  Identities=27%  Similarity=0.290  Sum_probs=48.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECC------CHHHHHHHHHHHHH
Q ss_conf             799970687237899999987520089879999738855668899819883344897258------48999999999974
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD------TGEQALEITDMLVR  142 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~------~~E~~~~i~~~li~  142 (363)
                      ...++||+++|||++|+.++...........-.....  ..-.....|-.+|-+.+.+.+      ..|++-++.+....
T Consensus        26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~  103 (325)
T COG0470          26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC--RSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE  103 (325)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             1003799999789999999999658664334552002--24443202568865997732133330069999999986044


Q ss_pred             C---CCCCEEEEECCCCCCC
Q ss_conf             4---8976899814333220
Q gi|255764460|r  143 S---GAVDIIVIDSVAALTP  159 (363)
Q Consensus       143 ~---~~~~liViDSi~al~p  159 (363)
                      .   +...+|+||.+.+|.+
T Consensus       104 ~~~~~~~kviiidead~mt~  123 (325)
T COG0470         104 SPLEGGYKVVIIDEADKLTE  123 (325)
T ss_pred             CCCCCCCEEEEEECCCCCCH
T ss_conf             65667726999732032698


No 330
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.82  E-value=0.0011  Score=42.90  Aligned_cols=32  Identities=41%  Similarity=0.683  Sum_probs=28.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHH-HHHHHC
Q ss_conf             72688079997068723789999998-752008
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTI-AQSQKT   94 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~-a~~qk~   94 (363)
                      -||++++|-|.|+++||||+||+.++ |+.|+.
T Consensus        22 ~IP~~klvViTGvSGSGKSSLAFDTlyAEGQRr   54 (944)
T PRK00349         22 DIPRDKLVVITGLSGSGKSSLAFDTIYAEGQRR   54 (944)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             357998899988988868999988788878788


No 331
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=96.81  E-value=0.0046  Score=38.94  Aligned_cols=89  Identities=26%  Similarity=0.333  Sum_probs=65.9

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCCHHHHHHHCCCHHHEEEEECCCHHHH-HH---HH---HHHHH
Q ss_conf             9970687237899999987520089879999-73885566889981988334489725848999-99---99---99974
Q gi|255764460|r   71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALDSIYARKLGVDLKNLLISQPDTGEQA-LE---IT---DMLVR  142 (363)
Q Consensus        71 ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~-~~---i~---~~li~  142 (363)
                      -+-|-||||||+|-=.++...|+.=..|+.. |.--.+|.+|+++.|+     .+.|-+|++++ |+   +.   +.|-+
T Consensus        38 NfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~DA~RlR~~G~-----~a~~~nTGk~CHLdA~mv~G~~~~L~~  112 (225)
T TIGR00073        38 NFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKNDADRLRKYGV-----PAIQINTGKECHLDAHMVAGAIHALKD  112 (225)
T ss_pred             EECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC-----EEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf             802588611589999999984578978999755322556999986498-----688636886444016678658755421


Q ss_pred             C---CCCCEEEEECCCCCCCHHHHH
Q ss_conf             4---897689981433322026554
Q gi|255764460|r  143 S---GAVDIIVIDSVAALTPRAEIE  164 (363)
Q Consensus       143 ~---~~~~liViDSi~al~p~~Eie  164 (363)
                      .   ...|+++|-=||+|+-.+++|
T Consensus       113 ~~ld~~~DlL~IENVGNLvCP~~Fd  137 (225)
T TIGR00073       113 LPLDDISDLLLIENVGNLVCPADFD  137 (225)
T ss_pred             CCCCCCCCEEEEEECCCCEECCCCC
T ss_conf             6888714626886447610067311


No 332
>KOG0731 consensus
Probab=96.81  E-value=0.014  Score=35.84  Aligned_cols=31  Identities=39%  Similarity=0.606  Sum_probs=25.2

Q ss_pred             HCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             2389726880799970687237899999987520
Q gi|255764460|r   59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        59 Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      || -=+|+|-  .+.|||+||||.||--++.+++
T Consensus       339 lG-AKiPkGv--LL~GPPGTGKTLLAKAiAGEAg  369 (774)
T KOG0731         339 LG-AKIPKGV--LLVGPPGTGKTLLAKAIAGEAG  369 (774)
T ss_pred             CC-CCCCCCE--EEECCCCCCHHHHHHHHHCCCC
T ss_conf             47-7676751--7878999867899998853058


No 333
>cd03221 ABCF_EF-3 ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site.  The reaction requires ATP hydrolysis.  EF-3 contains two ATP nucleotide binding sequence (NBS) motifs.  NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.81  E-value=0.03  Score=33.83  Aligned_cols=74  Identities=19%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEE-CCCHHH-HHHHHHH
Q ss_conf             7268807999706872378999999875200-898799997388556688998198833448972-584899-9999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-PDTGEQ-ALEITDM  139 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~-~~~~E~-~~~i~~~  139 (363)
                      -++.|.++-+.||.+||||||+ .++....+ ..|.+- ++...               ++-|++ -.-+|+ -+.++..
T Consensus        22 ~i~~ge~~~l~G~NGsGKTTl~-~~l~G~~~~~~G~i~-~~~~~---------------~i~y~~QLSgGqkqr~~la~a   84 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLL-KLIAGELEPDEGIVT-WGSTV---------------KIGYFEQLSGGEKMRLALAKL   84 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEE-ECCCC---------------EEEEEHHCCHHHHHHHHHHHH
T ss_conf             9879999999989998499999-998489889850999-99960---------------899870079999999999999


Q ss_pred             HHHCCCCCEEEEECCC
Q ss_conf             9744897689981433
Q gi|255764460|r  140 LVRSGAVDIIVIDSVA  155 (363)
Q Consensus       140 li~~~~~~liViDSi~  155 (363)
                      ++..  .+++++|=-.
T Consensus        85 l~~~--p~iliLDEPt   98 (144)
T cd03221          85 LLEN--PNLLLLDEPT   98 (144)
T ss_pred             HCCC--CCEEEEECCC
T ss_conf             7259--9899995775


No 334
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.81  E-value=0.017  Score=35.36  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=25.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             72688079997068723789999998752008987
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT   97 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~   97 (363)
                      -++.|.++-|.||.++|||||.-.++.......|.
T Consensus        26 ~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~p~~G~   60 (251)
T PRK09544         26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV   60 (251)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf             98799799999899988999999996688898608


No 335
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter.  The CCM family is involved in bacterial cytochrome c biogenesis.  Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH.  The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.80  E-value=0.025  Score=34.31  Aligned_cols=37  Identities=30%  Similarity=0.497  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEE
Q ss_conf             7268807999706872378999999875200-8987999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAF  100 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~  100 (363)
                      -+++|.++-|.||.+||||||. .+++...+ ..|.+.|
T Consensus        22 ~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~sG~i~~   59 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLL-RILAGLSPPLAGRVLL   59 (201)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEE
T ss_conf             8879959999999999999999-9996677888529999


No 336
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.79  E-value=0.022  Score=34.63  Aligned_cols=42  Identities=21%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCC
Q ss_conf             268807999706872378999999875200-8987999973885
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHA  106 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~~  106 (363)
                      ++.|-++-|.||++||||||. .+++.... ..|.+.+-|.+..
T Consensus        47 I~~GEi~~lvGpSGsGKSTLL-r~i~GL~~pt~G~I~i~~~~~~   89 (382)
T TIGR03415        47 IEEGEICVLMGLSGSGKSSLL-RAVNGLNPVSRGSVLVKDGDGS   89 (382)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEEECCCCC
T ss_conf             879989999999973499999-9997599988529999268642


No 337
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=96.78  E-value=0.0063  Score=38.06  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             970687237899999987520089879999738
Q gi|255764460|r   72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        72 i~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      +.||+||||||+|-.+..-.+..|..+..|.-.
T Consensus         1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLD   33 (234)
T pfam03029         1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLD   33 (234)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             989898988999999999999779975999789


No 338
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.78  E-value=0.018  Score=35.16  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             7268807999706872378999999875200898
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG   96 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~   96 (363)
                      -+..|.++-+.|+.+||||||+-.++.......|
T Consensus        25 ~i~~Ge~~~LvG~NGaGKSTL~k~l~G~l~~~~G   58 (490)
T PRK10938         25 TLNAGDSWAFVGSNGSGKSALARALAGELPLLKG   58 (490)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             9989989999979997799999999569987885


No 339
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77  E-value=0.0043  Score=39.14  Aligned_cols=88  Identities=23%  Similarity=0.473  Sum_probs=57.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCC-CEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf             726880799970687237899999987520-089-87999973885566-------889981988334489725848999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTG-GTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQA  133 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g-~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~  133 (363)
                      .+..|.+.-+.||.|.||||....+++.+. +.| ..|++|.+. +|.-       .|++-+||-+     .-..+.++.
T Consensus       344 ~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~D-tyRiga~eQL~~y~~ilgvpv-----~~~~~~~~l  417 (557)
T PRK12727        344 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAV-----HEADSAESL  417 (557)
T ss_pred             HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC-CCCHHHHHHHHHHHHHHCCEE-----EEECCHHHH
T ss_conf             15407647874377767311799999999997399818999726-640879999999999839757-----982899999


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf             999999974489768998143332202
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVIDSVAALTPR  160 (363)
Q Consensus       134 ~~i~~~li~~~~~~liViDSi~al~p~  160 (363)
                      -.++..|   ...+||+||..+ +.++
T Consensus       418 ~~~l~~l---~~~~lvliDTaG-~~~r  440 (557)
T PRK12727        418 LDLLERL---RDYKLVLIDTAG-MGQR  440 (557)
T ss_pred             HHHHHHH---CCCCEEEEECCC-CCCC
T ss_conf             9999983---699989994999-8846


No 340
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.77  E-value=0.01  Score=36.82  Aligned_cols=43  Identities=30%  Similarity=0.522  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             72688079997068723789999998752008987999973885
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA  106 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~  106 (363)
                      -++.|.++-+.||++|||||+. .+++...+...--+++|.+.-
T Consensus        28 ~i~~Ge~~~llGpSG~GKTTlL-r~iaGl~~p~~G~I~~~g~~v   70 (351)
T PRK11432         28 TIKQGTMVTLLGPSGCGKTTVL-RLVAGLEKPTSGQIFIDGEDV   70 (351)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEEC
T ss_conf             9889989999999964999999-999769998836999999999


No 341
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.77  E-value=0.043  Score=32.78  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=24.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             72688079997068723789999998752008
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT   94 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~   94 (363)
                      =++.|.++-|.|+.+||||||+- +++.....
T Consensus        27 ~i~~Ge~~~lvG~nGsGKSTL~~-~l~Gl~p~   57 (513)
T PRK13549         27 RVRAGEIVSLCGENGAGKSTLMK-VLSGVYPH   57 (513)
T ss_pred             EECCCCEEEEECCCCCHHHHHHH-HHHCCCCC
T ss_conf             98899799998999972999999-99567889


No 342
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.75  E-value=0.0023  Score=40.86  Aligned_cols=40  Identities=30%  Similarity=0.499  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             72688079997068723789999998752008987999973
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA  103 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~  103 (363)
                      -+++|-++-|.||++|||||| |++++...+...--++|+.
T Consensus        27 ~i~~Ge~vaI~GpSGSGKSTL-Lniig~ld~pt~G~v~i~g   66 (226)
T COG1136          27 EIEAGEFVAIVGPSGSGKSTL-LNLLGGLDKPTSGEVLING   66 (226)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECC
T ss_conf             874998999989999989999-9999646678884699998


No 343
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.75  E-value=0.01  Score=36.70  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             799970687237899999987520089879999738
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      |+-+.|--|.||||+|..++....+.|..++.+|+.
T Consensus         1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~D   36 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD   36 (217)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             989978996619999999999999689949999589


No 344
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=96.75  E-value=0.042  Score=32.85  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCCC
Q ss_conf             2688079997068723789999998752008-----9879999738855
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKT-----GGTCAFVDAEHAL  107 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-----g~~~~~iD~E~~~  107 (363)
                      +..|-..-+.|+++||||..|+.++.-..+.     .|.+.| |.+.-+
T Consensus        33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f-~G~dlL   80 (534)
T COG4172          33 IEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILF-DGEDLL   80 (534)
T ss_pred             ECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEE-CCHHHH
T ss_conf             438977999834889822899999974689854576632678-670132


No 345
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=96.74  E-value=0.0031  Score=40.07  Aligned_cols=65  Identities=29%  Similarity=0.392  Sum_probs=46.2

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHC
Q ss_conf             14772789997238972688079997068723789999998752008-9879999738855668899819
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLG  116 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~~~~a~~~G  116 (363)
                      .+||+..+..-+-.|.+  | -|.|.||.++|||+|..-+++++||- +..+.++|-..+... +...+|
T Consensus       440 t~sG~TPf~fN~H~~dv--G-HtlIiGpTGsGKTvll~fl~aq~~ky~~~~vf~FDKd~s~~i-~~~a~G  505 (818)
T PRK13830        440 VASGSTPFRLNLHVDDV--G-HTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAFDKGRSMLP-LTLAAG  505 (818)
T ss_pred             ECCCCCCEEEECCCCCC--C-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-HHHHHC
T ss_conf             14899753562788986--5-058989999988999999999986427983899748876899-999809


No 346
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.74  E-value=0.0021  Score=41.14  Aligned_cols=55  Identities=35%  Similarity=0.488  Sum_probs=41.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC---HHHHHHHCCC
Q ss_conf             7268807999706872378999999875200898799997388556---6889981988
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD---SIYARKLGVD  118 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~---~~~a~~~Gvd  118 (363)
                      -+|.|.++-|-||.+|||||| |.+++...+...-.+++|...-.+   .+.|+.+++=
T Consensus        24 ~i~~G~i~~iiGpNG~GKSTL-Lk~l~~~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v   81 (258)
T COG1120          24 SIPKGEITGILGPNGSGKSTL-LKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV   81 (258)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHEEEE
T ss_conf             865997999989988899999-9998656788887799999724546988875618993


No 347
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.73  E-value=0.023  Score=34.55  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=35.2

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             0799970687237899999987520089879999738
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      |++-|+|--+.||||.+..+++...+.|.+|+.||+.
T Consensus         2 r~Iai~GKGGVGKTTtavNLA~aLa~~GkkVlliDaD   38 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD   38 (270)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             5899979985778999999999999879949998657


No 348
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.72  E-value=0.01  Score=36.69  Aligned_cols=42  Identities=26%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||++||||||. .+++...+...--++||.+.
T Consensus        25 ~i~~Ge~~~llGpsG~GKSTll-r~i~Gl~~p~~G~I~i~g~~   66 (369)
T PRK11000         25 DIHEGEFVVFVGPSGCGKSTLL-RMIAGLEDITSGDLFIGEKR   66 (369)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9879989999999973699999-99977999995499999999


No 349
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=96.72  E-value=0.047  Score=32.54  Aligned_cols=36  Identities=25%  Similarity=0.197  Sum_probs=30.6

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             970687237899999987520089879999738855
Q gi|255764460|r   72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL  107 (363)
Q Consensus        72 i~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~  107 (363)
                      ..|--|+||||++.+++....+.|..|+.||.....
T Consensus         4 ~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~   39 (212)
T pfam01656         4 AGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQA   39 (212)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             768998069999999999999789978998389999


No 350
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=96.72  E-value=0.017  Score=35.43  Aligned_cols=136  Identities=15%  Similarity=0.241  Sum_probs=75.6

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHH---CCCH
Q ss_conf             5501477278999723897268807999706872378999999875200898799997388556--6889981---9883
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKL---GVDL  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~---Gvd~  119 (363)
                      -+.|.||+.++|.++.   +-+|.=+-|+|.++.|||+|+.+++.++  ....++|.-.-.+.+  .++.+.+   |. +
T Consensus       121 ~e~l~TGI~aID~l~~---l~rGQKi~IFsgsG~gks~L~~~Ia~~a--~~dvvV~~~iGer~~e~~~f~~~~~~~~~-l  194 (432)
T PRK02118        121 REMIRTGIPMIDVFNT---LVKSQKIPIFSSSGEPYNALLARIALQA--EADIIILGGMGLTFDDYLFFKDEFEKAGA-L  194 (432)
T ss_pred             CCCCCCCCEEEECCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCEEEEECCEEECHHHHHHHHHHHHCCC-C
T ss_conf             7677889678542367---4058569874479997639999998853--89989640332441258999998750687-7


Q ss_pred             HHE--EEEECC--CHH------HHHHHHHHHH-HCCCCCEEEEECCCCCC-CHHHHHHHHHH-----HCCCHHHHHHHHH
Q ss_conf             344--897258--489------9999999997-44897689981433322-02655434555-----3022478887677
Q gi|255764460|r  120 KNL--LISQPD--TGE------QALEITDMLV-RSGAVDIIVIDSVAALT-PRAEIEGDMGE-----SLPGMQARLMSQA  182 (363)
Q Consensus       120 ~~l--~~~~~~--~~E------~~~~i~~~li-~~~~~~liViDSi~al~-p~~Eie~~~~d-----~~~g~~ar~ms~~  182 (363)
                      ++.  ++.+.+  .++      -++.++|.+- ..|.--|+++||++..+ ...|+-..+++     ...+...-.++++
T Consensus       195 ~rtvlv~~ts~~p~~~R~~~~~~altiAEyfr~d~G~~VLli~DdlTr~A~A~REIs~~~ge~P~r~GYP~~l~s~La~l  274 (432)
T PRK02118        195 DRTVMFVHTAVDPPVECLLVPDMALAVAEKFAVEEGKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLAKR  274 (432)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf             70799834777898998778888888999998745972999976678877788789875489998778695399999999


Q ss_pred             HHHH
Q ss_conf             6777
Q gi|255764460|r  183 LRKL  186 (363)
Q Consensus       183 lrkl  186 (363)
                      +-+.
T Consensus       275 ~ERA  278 (432)
T PRK02118        275 YEKA  278 (432)
T ss_pred             HHHC
T ss_conf             9834


No 351
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.72  E-value=0.033  Score=33.53  Aligned_cols=73  Identities=23%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHCCC-----------HHHEEEEEC
Q ss_conf             9726880799970687237899999987520089879999738--855668-89981988-----------334489725
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLGVD-----------LKNLLISQP  127 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~Gvd-----------~~~l~~~~~  127 (363)
                      =-+|+|..+-|.||+|||||||+--++.-.....|. ++||.-  ..++++ +-+++|+=           -+|+.+.++
T Consensus       362 ~~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~-I~idG~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNi~~g~~  440 (593)
T PRK10790        362 LSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD  440 (593)
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             044899789987999886899999999855678994-1659932442468888631575166651456529999776002


Q ss_pred             CCHHHHHH
Q ss_conf             84899999
Q gi|255764460|r  128 DTGEQALE  135 (363)
Q Consensus       128 ~~~E~~~~  135 (363)
                      -+-|+..+
T Consensus       441 ~~~~~i~~  448 (593)
T PRK10790        441 ISEEQVWQ  448 (593)
T ss_pred             CCHHHHHH
T ss_conf             36799999


No 352
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.71  E-value=0.041  Score=32.94  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEE
Q ss_conf             9726880799970687237899999987520089-879999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFV  101 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~i  101 (363)
                      =-++.|.++-|.||.+||||||. .+++...+.. |.+.|-
T Consensus        23 f~i~~Gei~~l~G~NGaGKTTLl-k~i~Gl~~p~~G~I~~~   62 (206)
T PRK13539         23 FTLAAGEALVLTGPNGSGKTTLL-RLLAGLLPPAAGTIKLD   62 (206)
T ss_pred             EEECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEEC
T ss_conf             89869949999899999899999-99958878885189999


No 353
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.70  E-value=0.029  Score=33.90  Aligned_cols=42  Identities=24%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.|.-|.|+++||||||+ .++....+...--+++|...
T Consensus        27 ~I~~Gei~giIG~SGaGKSTLl-r~i~gL~~ptsG~I~~~G~d   68 (343)
T PRK11153         27 HVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTSGSVIVDGQD   68 (343)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEE
T ss_conf             9989989999999998699999-99965999996399999999


No 354
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.70  E-value=0.027  Score=34.13  Aligned_cols=85  Identities=20%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHH--HHHCCCEEEEEECCCCCCHH-----HHHHHCCCHHHEEEEECCCHHHHHHHHHH
Q ss_conf             807999706872378999999875--20089879999738855668-----89981988334489725848999999999
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSI-----YARKLGVDLKNLLISQPDTGEQALEITDM  139 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~--~qk~g~~~~~iD~E~~~~~~-----~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~  139 (363)
                      =+++-|+|..|.||||||-.+...  .+..-..++|+..-..++..     .++.++.....   ..+...++....+..
T Consensus        19 ~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~l~~~l~~   95 (285)
T pfam00931        19 LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSD---WVEKNESELAVKIKE   95 (285)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHH
T ss_conf             53999889995639999999971655650598389999797666899999999985666545---555789999999999


Q ss_pred             HHHCCCCCEEEEECCC
Q ss_conf             9744897689981433
Q gi|255764460|r  140 LVRSGAVDIIVIDSVA  155 (363)
Q Consensus       140 li~~~~~~liViDSi~  155 (363)
                      .++ +..-|||+|-|-
T Consensus        96 ~L~-~kr~LiVLDDVw  110 (285)
T pfam00931        96 ALL-RKRFLLVLDDVW  110 (285)
T ss_pred             HHC-CCCEEEEECCCC
T ss_conf             972-796699963888


No 355
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.69  E-value=0.013  Score=36.15  Aligned_cols=88  Identities=25%  Similarity=0.345  Sum_probs=60.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCCCCCHHHHHHHCCCHHHEEEEECCCHHH-------HHHHHHHH
Q ss_conf             99970687237899999987520089879999--7388556688998198833448972584899-------99999999
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--DAEHALDSIYARKLGVDLKNLLISQPDTGEQ-------ALEITDML  140 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i--D~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~-------~~~i~~~l  140 (363)
                      +-+.+-|+||||||...++...... ..++.|  |-+-+.|.++.++.|+.     .+|-+|+-.       +-..+..|
T Consensus       107 lNl~sSPGSGKTtLLe~ti~~L~~~-~~~aVIeGD~~T~~DA~RI~~~Gv~-----avQInTG~~CHLDA~MV~~al~~l  180 (290)
T PRK10463        107 LNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRATGTP-----AIQVNTGKGCHLDAQMIADAAPRL  180 (290)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHHCCCC-----EEEECCCCCCCCCHHHHHHHHHHC
T ss_conf             9930699878899999999987336-7579996042356679999976995-----899547997675999999999848


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             744897689981433322026554
Q gi|255764460|r  141 VRSGAVDIIVIDSVAALTPRAEIE  164 (363)
Q Consensus       141 i~~~~~~liViDSi~al~p~~Eie  164 (363)
                       .-...++++|.-|++|+-.++++
T Consensus       181 -~l~~~dllfIENVGNLVCPA~FD  203 (290)
T PRK10463        181 -PLDDNGILFIENVGNLVCPASFD  203 (290)
T ss_pred             -CCCCCCEEEEECCCCCCCCCCCC
T ss_conf             -98779899981278843551203


No 356
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=96.68  E-value=0.0038  Score=39.48  Aligned_cols=47  Identities=30%  Similarity=0.383  Sum_probs=40.8

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHC
Q ss_conf             799970687237899999987520089-879999738855668899819
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKLG  116 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E~~~~~~~a~~~G  116 (363)
                      -|-|.|+.++|||+|.--++++++|-+ ..++++|-.++.++ +.+++|
T Consensus       438 hT~I~G~tGaGKTvLl~~lla~~~k~~~~~iv~fDk~~g~~~-~~~a~g  485 (796)
T COG3451         438 HTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAYI-FIEALG  485 (796)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH-HHHHHC
T ss_conf             749988988878999999999998745981899848973577-888749


No 357
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.68  E-value=0.054  Score=32.20  Aligned_cols=160  Identities=17%  Similarity=0.238  Sum_probs=92.0

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCH-HHHHHHCCCHHHEEEEECCCHHHHHHHHHHHH
Q ss_conf             68807999706872378999999875200898799997388--5566-88998198833448972584899999999997
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDS-IYARKLGVDLKNLLISQPDTGEQALEITDMLV  141 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~-~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li  141 (363)
                      ..|.+.-+|||--||||+-.|+.+.+.+-.|..++.+-.+-  .+.. ....+.|+...-..+-   ..++.++.+..+-
T Consensus         2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~---~~~~i~~~i~~~~   78 (201)
T COG1435           2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIP---SDTDIFDEIAALH   78 (201)
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCCCEECC---CHHHHHHHHHHCC
T ss_conf             4478999971576863599999999999759808998525335356433653158766535638---7578999998513


Q ss_pred             HCCCCCEEEEECCCCCCCHH-HHHHHHHHH-----------------CCCHHHHHHH--HHHHHHHHHH---CCCCCEEE
Q ss_conf             44897689981433322026-554345553-----------------0224788876--7767777642---01781899
Q gi|255764460|r  142 RSGAVDIIVIDSVAALTPRA-EIEGDMGES-----------------LPGMQARLMS--QALRKLTSSI---SRSKCILV  198 (363)
Q Consensus       142 ~~~~~~liViDSi~al~p~~-Eie~~~~d~-----------------~~g~~ar~ms--~~lrkl~~~~---~k~~~~~i  198 (363)
                      ....+++|.||-+--+.++. +.-.++.|.                 .-+..+.||+  --+.+|...+   ++.-+.++
T Consensus        79 ~~~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC~~Cg~~At~~~  158 (201)
T COG1435          79 EKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAICNVCGRKATRTL  158 (201)
T ss_pred             CCCCCCEEEEEHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             47875789996167189789999999986149889995446531328784489999998789998888987588106998


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             986341145665466512565531111112489
Q gi|255764460|r  199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRL  231 (363)
Q Consensus       199 ~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl  231 (363)
                      .++   +..-+.|-+|.+.-||+- .|-+=.|.
T Consensus       159 Rl~---~~~~a~~~~~~i~IGg~e-~Y~a~CR~  187 (201)
T COG1435         159 RLI---NGGPAVYEGPQILIGGNE-SYEARCRK  187 (201)
T ss_pred             EEC---CCCCCCCCCCEEEECCCC-CCHHHHHH
T ss_conf             841---798886679858987975-30004444


No 358
>KOG0739 consensus
Probab=96.67  E-value=0.021  Score=34.82  Aligned_cols=227  Identities=21%  Similarity=0.297  Sum_probs=109.9

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-CCCHHHEEEEECCCHHHHHHHHH
Q ss_conf             897268807999706872378999999875200898799997388556-6889981-98833448972584899999999
Q gi|255764460|r   61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-GVDLKNLLISQPDTGEQALEITD  138 (363)
Q Consensus        61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-Gvd~~~l~~~~~~~~E~~~~i~~  138 (363)
                      .|+-.+=|=+.+||||++|||+||-.++-++-   -.  |+    +++ .+....+ | .           .|....-+-
T Consensus       160 tGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn---ST--FF----SvSSSDLvSKWmG-E-----------SEkLVknLF  218 (439)
T KOG0739         160 TGKRKPWRGILLYGPPGTGKSYLAKAVATEAN---ST--FF----SVSSSDLVSKWMG-E-----------SEKLVKNLF  218 (439)
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC---CC--EE----EEEHHHHHHHHHC-C-----------HHHHHHHHH
T ss_conf             58877542578867999757799999874147---70--68----7301788998732-1-----------799999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-CEEEE-EE---CCCCCCCCCCC
Q ss_conf             997448976899814333220-26554345553022478887677677776420178-18999-86---34114566546
Q gi|255764460|r  139 MLVRSGAVDIIVIDSVAALTP-RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK-CILVF-IN---QMRMKIGVMFG  212 (363)
Q Consensus       139 ~li~~~~~~liViDSi~al~p-~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~-~~~i~-iN---Q~r~~ig~m~g  212 (363)
                      .+.|+....+|+||-|.+|+. +.|-|.+       ..-|+-+.||-.+...=+.+. +.++. +|   ++-+-|-..|-
T Consensus       219 emARe~kPSIIFiDEiDslcg~r~enEse-------asRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFe  291 (439)
T KOG0739         219 EMARENKPSIIFIDEIDSLCGSRSENESE-------ASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFE  291 (439)
T ss_pred             HHHHHCCCCEEEEEHHHHHCCCCCCCCHH-------HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             99873499479863444432688777117-------77777778887640666588864897237884367799998765


Q ss_pred             CCCCC--CCCCCCCCCCCEEEEEECCC-CCCC---------CCEEEEEEEEEEEEECCCCCCCCEEEEEEECCC--CCCC
Q ss_conf             65125--65531111112489750455-3445---------772476799987740577898515899986187--4231
Q gi|255764460|r  213 SPETT--TGGNALKFYSSVRLDIRRVG-SIKD---------KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE--GISF  278 (363)
Q Consensus       213 ~p~~~--~GG~al~~~aS~rl~i~k~~-~ik~---------~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~--GI~~  278 (363)
                      .--..  |--.|-.++  .+|-+.... .+.+         .+-.-|..+.+ ||+.-+--|-|++..-.+|-+  |=++
T Consensus       292 kRIYIPLPe~~AR~~M--F~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisi-vVrDalmePvRkvqsAthFk~v~~~s~  368 (439)
T KOG0739         292 KRIYIPLPEAHARARM--FKLHLGDTPHVLTEQDFKELARKTEGYSGSDISI-VVRDALMEPVRKVQSATHFKKVSGPSN  368 (439)
T ss_pred             CCEECCCCCHHHHHHH--HEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEE-EEHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             0230108737876555--0320478864133566999976437877675477-866644235887510232200689998


Q ss_pred             CCHHHHHHHHCCCCEE---CCCEEEECCEEECCHHHHHHHHHH
Q ss_conf             1159999973286230---274478889450303899999986
Q gi|255764460|r  279 FGELIDLGVKASIVDK---SGAWFSFKGQRLGQGRENSKIFLR  318 (363)
Q Consensus       279 ~~~lldla~~~giI~k---~Gawy~~~~e~~gqGk~~~~~~l~  318 (363)
                      -.+|-+++..+---..   .-.|...+.+++..-.--.++|++
T Consensus       369 ~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k  411 (439)
T KOG0739         369 PSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLK  411 (439)
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCHHHHHH
T ss_conf             3430345688999996226654302878660599740999999


No 359
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.67  E-value=0.027  Score=34.03  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=18.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             268807999706872378999999875
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      |..|..+-|.|+.|||||||+ .+++.
T Consensus        26 I~~Ge~vgLVG~NGsGKSTLl-~iL~G   51 (632)
T PRK11147         26 IEDNERVCLVGRNGAGKSTLM-KILSG   51 (632)
T ss_pred             ECCCCEEEEECCCCCHHHHHH-HHHHC
T ss_conf             989989999999998799999-99838


No 360
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.66  E-value=0.0046  Score=38.97  Aligned_cols=84  Identities=20%  Similarity=0.300  Sum_probs=51.3

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             68807999706872378999999875200898799997388556688998198833448972584899999999997448
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG  144 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~  144 (363)
                      ..|-++=+.|.++|||||+|-.+.....+.|..+.++|... ++..+-..+|.+.+.    +..+..-.-.++..|.++|
T Consensus         2 ~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~-lR~~l~~~lgfs~~d----R~~n~~r~~~la~~l~~~g   76 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDI-VRTNLSKGLGFSKED----RDTNIRRIGFVAHLLTRHG   76 (175)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH-HHHHHCCCCCCCHHH----HHHHHHHHHHHHHHHHHCC
T ss_conf             98889998898999999999999999998699679977688-887536788989899----9999999999999998189


Q ss_pred             CCCEEEEECCCC
Q ss_conf             976899814333
Q gi|255764460|r  145 AVDIIVIDSVAA  156 (363)
Q Consensus       145 ~~~liViDSi~a  156 (363)
                         ++||=|+-+
T Consensus        77 ---~~vIvs~is   85 (175)
T PRK00889         77 ---VIVLVSAIS   85 (175)
T ss_pred             ---CEEEEEECC
T ss_conf             ---868885047


No 361
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.65  E-value=0.0055  Score=38.43  Aligned_cols=48  Identities=33%  Similarity=0.459  Sum_probs=40.1

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             80799970687237899999987520089879999738855668899819
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG  116 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~G  116 (363)
                      | -|.|.||+++|||||..-+++++||-+..++++|-..+.. -+.+.+|
T Consensus       447 G-HtlI~G~TGsGKTtl~~fL~aq~~ky~~~~f~fDkd~~~~-i~~~a~G  494 (800)
T PRK13898        447 G-HTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRGAE-IFIRALN  494 (800)
T ss_pred             C-CEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCHH-HHHHHHC
T ss_conf             7-5699899999899999999999875488799997999869-9999829


No 362
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.64  E-value=0.012  Score=36.31  Aligned_cols=53  Identities=25%  Similarity=0.399  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCC--CCCH-HHHHHHCC
Q ss_conf             726880799970687237899999987520-0898799997388--5566-88998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEH--ALDS-IYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~--~~~~-~~a~~~Gv  117 (363)
                      =++.|.++-|.||.+||||||. .+++... ...|.+ +++.+.  .+++ ++++.+|+
T Consensus        24 ~i~~Gei~~liGpNGaGKSTLl-k~i~Gl~~p~~G~I-~~~g~~i~~~~~~~~~~~~g~   80 (257)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTLL-RALSGELPPSSGEV-RLFGRPLADWSPAELARRRAV   80 (257)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EEECEECCCCCHHHHHHHEEE
T ss_conf             9869989999999998799999-99856757787569-993657675899999754658


No 363
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346   This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro .    Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=96.63  E-value=0.0035  Score=39.66  Aligned_cols=48  Identities=38%  Similarity=0.466  Sum_probs=39.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCC----EEEEEECCCCCCHHHHHHH
Q ss_conf             8807999706872378999999875200898----7999973885566889981
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGG----TCAFVDAEHALDSIYARKL  115 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~----~~~~iD~E~~~~~~~a~~~  115 (363)
                      .| -|.|+|++|+|||||.--++|++||=++    ..+|+|=-+++-+ +.+.+
T Consensus       516 ~G-hT~IfG~~G~GKTtLl~fL~a~~~ky~~~~a~~~~~fDkd~g~~~-~~~a~  567 (931)
T TIGR00929       516 LG-HTLIFGPTGSGKTTLLNFLLAQLQKYKPNFALTIFAFDKDRGMEI-FIRAL  567 (931)
T ss_pred             CC-CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHH-HHEEE
T ss_conf             38-777888889846999999999974248898706999887898210-41111


No 364
>PRK06921 hypothetical protein; Provisional
Probab=96.62  E-value=0.05  Score=32.42  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=63.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf             79997068723789999998752008-98799997388556688998198833448972584899999999997448976
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD  147 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~  147 (363)
                      ...++|++|+|||.||..++.+..+. |-.|+|+..-..+     ..+--|.        +..+   +.++.+.   ..+
T Consensus       118 ~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~-----~~lk~~~--------~~~~---~~l~~~~---~~d  178 (265)
T PRK06921        118 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF-----GDLKDDF--------DLLE---AKLNRMK---KVE  178 (265)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHH-----HHHHHHH--------HHHH---HHHHHHH---CCC
T ss_conf             2799728989889999999999999629719998879999-----9999888--------8899---9999863---299


Q ss_pred             EEEEECC-----CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf             8998143-----33220265543455530224788876776777764201781899986341145
Q gi|255764460|r  148 IIVIDSV-----AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI  207 (363)
Q Consensus       148 liViDSi-----~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~i  207 (363)
                      |+|||=+     ++-.     ..          .-.+++.+..|.........++|-+|-..+.+
T Consensus       179 lLIIDDLfk~~~G~e~-----~t----------e~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L  228 (265)
T PRK06921        179 VLFIDDLFKPVNGKPR-----AT----------EWQIEQTYSVVNYRYLNHKPILISSELTIDEL  228 (265)
T ss_pred             EEEEECCCCCCCCCCC-----CC----------HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
T ss_conf             9998221223479878-----98----------89999999999999976999899868998999


No 365
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937    Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12).     Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , .   More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=96.62  E-value=0.014  Score=35.88  Aligned_cols=128  Identities=27%  Similarity=0.337  Sum_probs=70.3

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEE
Q ss_conf             14772789997238972688079997068723789999998752008987999973885566889981-98833448972
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQ  126 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~  126 (363)
                      +|--.+.|=.-+| =-=|+|  +.+|||||||||.||--++.++.     +-||-.   +..++.+++ |          
T Consensus       140 LPlk~PeLF~~vG-I~PPKG--vLLyGPPGtGKTLlAKAvA~et~-----ATFIrv---VgSElV~KyIG----------  198 (364)
T TIGR01242       140 LPLKKPELFEEVG-IEPPKG--VLLYGPPGTGKTLLAKAVAHETN-----ATFIRV---VGSELVRKYIG----------  198 (364)
T ss_pred             CCCCCCHHHHHCC-CCCCCC--EEEECCCCCCHHHHHHHHHCCCC-----CEEEEE---EHHHHHHHHHC----------
T ss_conf             4688831677628-898986--57007579768899998631455-----126886---04444444413----------


Q ss_pred             CCCHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf             5848999--999999974489768998143332202655434555302247888767767777642017818999-8634
Q gi|255764460|r  127 PDTGEQA--LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF-INQM  203 (363)
Q Consensus       127 ~~~~E~~--~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iNQ~  203 (363)
                          |-|  ..-+-.|.++.+..+|+||-+.|...+.--....||.-+   .|-|=|.|--|-..=.+-|+-+|. ||..
T Consensus       199 ----EGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV---~RTlmQLLAElDGFd~rg~VkviaATNR~  271 (364)
T TIGR01242       199 ----EGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREV---QRTLMQLLAELDGFDPRGNVKVIAATNRP  271 (364)
T ss_pred             ----CHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf             ----31689999999853069816861013335432114677873157---88999999752488876761688720762


No 366
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export.  Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters.  A typical system is made of a conserved integral membrane and an ABC.  In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.62  E-value=0.041  Score=32.91  Aligned_cols=31  Identities=26%  Similarity=0.461  Sum_probs=24.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf             72688079997068723789999998752008
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT   94 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~   94 (363)
                      -++.|.++-|.||.+||||||. .+++...+.
T Consensus        44 ~i~~GeivgilG~NGaGKSTLl-~~i~Gl~~p   74 (224)
T cd03220          44 EVPRGERIGLIGRNGAGKSTLL-RLLAGIYPP   74 (224)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCC
T ss_conf             9838989999979998199999-999758777


No 367
>PHA00520 packaging NTPase P4
Probab=96.61  E-value=0.021  Score=34.76  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=80.8

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC-HHHEEEEECCCHHHHHHHHHH
Q ss_conf             8972688079997068723789999998752008987999973885566889981988-334489725848999999999
Q gi|255764460|r   61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDM  139 (363)
Q Consensus        61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd-~~~l~~~~~~~~E~~~~i~~~  139 (363)
                      .-++..| ++.+.|-.+||||-+.-+.......+|+.++.==.|-.-        |.| .++-+|.  ...++++..+-.
T Consensus       108 ~~~i~SG-~~vv~G~t~sGKT~~lna~~~~~~~k~~~v~IRwGEp~e--------~yde~e~~~~~--sdL~~~l~v~l~  176 (326)
T PHA00520        108 GHRIASG-MVIVTGGTGSGKTPLLNALGEPLGGKDKDVTVRWGEPLE--------GYDEAERPLYG--SDLNVFLAVILR  176 (326)
T ss_pred             CCCCCCC-EEEEECCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCC--------CCCCCCCCCCC--CCHHHHHHHHHH
T ss_conf             6521042-499964788886755665421025899874898368543--------34620133210--449999999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf             97448976899814333220265543455-5302247888767767777642017818999-8634
Q gi|255764460|r  140 LVRSGAVDIIVIDSVAALTPRAEIEGDMG-ESLPGMQARLMSQALRKLTSSISRSKCILVF-INQM  203 (363)
Q Consensus       140 li~~~~~~liViDSi~al~p~~Eie~~~~-d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iNQ~  203 (363)
                      ++-  ..+.|+|||+-.++      ..++ ....|.-+|..-.+|.-|.+++...+|.+|+ +|-.
T Consensus       177 a~~--~~~vvvvDSlR~v~------~~l~Gnat~GGISr~~y~~LTdl~n~aas~gc~vV~~lNPm  234 (326)
T PHA00520        177 AML--QHRVVVVDSLRNVI------FALGGNATSGGISRGAYDLLTDIGNMAASRGCVVVASLNPM  234 (326)
T ss_pred             HHH--CCCEEEEECHHHHH------HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             864--57179952146666------44137878774468899999888888876395799973888


No 368
>KOG0734 consensus
Probab=96.61  E-value=0.0075  Score=37.60  Aligned_cols=101  Identities=31%  Similarity=0.476  Sum_probs=59.3

Q ss_pred             HHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-------------------------------CCCEEEEEECCCC
Q ss_conf             723897268807999706872378999999875200-------------------------------8987999973885
Q gi|255764460|r   58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------------------------------TGGTCAFVDAEHA  106 (363)
Q Consensus        58 ~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-------------------------------~g~~~~~iD~E~~  106 (363)
                      .|| |-+|+|  +.+.|||++|||.||-.++.+++-                               .-..++|||-=.+
T Consensus       331 rLG-GKLPKG--VLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDa  407 (752)
T KOG0734         331 RLG-GKLPKG--VLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDA  407 (752)
T ss_pred             HCC-CCCCCC--EEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             314-758885--38768999755699998605568974741662044542201489999999998734985999720022


Q ss_pred             CC-------HHHHH----HHCCCHH------HEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf             56-------68899----8198833------4489725848999999999974489768998143332202655
Q gi|255764460|r  107 LD-------SIYAR----KLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI  163 (363)
Q Consensus       107 ~~-------~~~a~----~~Gvd~~------~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Ei  163 (363)
                      +.       ..|++    ++=+++|      -+++.-..+.-++|+  ..|+|-|.+|..|.=+..-..-|.||
T Consensus       408 vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD--~AL~RPGRFD~~v~Vp~PDv~GR~eI  479 (752)
T KOG0734         408 VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD--KALTRPGRFDRHVTVPLPDVRGRTEI  479 (752)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH--HHHCCCCCCCEEEECCCCCCCCHHHH
T ss_conf             0566786277899989999999842867688669995168745556--87348875533674689773328999


No 369
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.60  E-value=0.021  Score=34.71  Aligned_cols=24  Identities=42%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             079997068723789999998752
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQS   91 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~   91 (363)
                      +++-|-|++|||||||+-.+++..
T Consensus         9 K~VailG~ESsGKStLv~kLA~~f   32 (187)
T COG3172           9 KTVAILGGESSGKSTLVNKLANIF   32 (187)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             135564576657179999999996


No 370
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.58  E-value=0.023  Score=34.50  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=27.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf             726880799970687237899999987520089-879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E  104 (363)
                      -++.|.++-|.||.+||||||. .+++...+.. |.+ +++..
T Consensus        33 ~v~~Ge~~~l~GpNGaGKTTLl-r~l~Gl~~p~~G~I-~~~g~   73 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLL-RVLAGLLHVESGQI-QIDGK   73 (214)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEE-EECCE
T ss_conf             9818989999999998799999-99976977884199-99999


No 371
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.58  E-value=0.019  Score=35.11  Aligned_cols=23  Identities=43%  Similarity=0.429  Sum_probs=14.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             99970687237899999987520
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      +.|.|+||||||||+-.++....
T Consensus       234 VvIlG~ESTGKTTL~~~LA~~yn  256 (411)
T PRK08099        234 VAILGGESSGKSTLVNKLANIFN  256 (411)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             99989998888999999999978


No 372
>KOG3949 consensus
Probab=96.58  E-value=0.0083  Score=37.31  Aligned_cols=61  Identities=30%  Similarity=0.260  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             65533465501477278999723897268807999706-872378999999875200898799
Q gi|255764460|r   38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCA   99 (363)
Q Consensus        38 ~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~-~~sGKTtlal~~~a~~qk~g~~~~   99 (363)
                      ..........+|||+..||.+|| ||+|.|.++.|--. +..=-+.|.-.++|+-...+..+.
T Consensus        19 r~S~~~~q~~tSSG~~~lD~iLG-gGLp~gs~vLIeEd~~~~~~s~LlK~FlAEGlv~~~~~~   80 (360)
T KOG3949          19 RPSPKNGQLITSSGIADLDQILG-GGLPLGSSVLIEEDRSMIYHSVLLKYFLAEGLVNNHTLL   80 (360)
T ss_pred             CCCCCCCCEEECCCCHHHHHHHC-CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             35788775575368634788850-774467579995056640699999999972300585677


No 373
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670   This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.56  E-value=0.0013  Score=42.32  Aligned_cols=54  Identities=26%  Similarity=0.584  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHH--HHHHHHHH---HHCCCEEEEEECCCCCCH-----HHHHHHCC
Q ss_conf             726880799970687237899--99998752---008987999973885566-----88998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTL--ALHTIAQS---QKTGGTCAFVDAEHALDS-----IYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtl--al~~~a~~---qk~g~~~~~iD~E~~~~~-----~~a~~~Gv  117 (363)
                      .||++.||-|-||+|||||||  ||.=+-..   ++--|.++| |-++=+++     ++=+++|+
T Consensus        23 ~I~~n~vTAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~G~v~f-~G~dIy~~~~D~~~LR~~vGM   86 (248)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF-DGQDIYDKKIDVVELRKRVGM   86 (248)
T ss_pred             EECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEE-CCCCCCCCCCCHHHHHHHCCC
T ss_conf             0037705898778898678999998877640788168888986-451145656687887622585


No 374
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.55  E-value=0.056  Score=32.08  Aligned_cols=30  Identities=33%  Similarity=0.473  Sum_probs=24.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             7268807999706872378999999875200
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK   93 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk   93 (363)
                      -++.|.++-|.||.+||||||+ .++....+
T Consensus        30 ~i~~Ge~v~i~G~nGsGKSTll-~~l~gl~~   59 (648)
T PRK10535         30 TIYAGEMVAIVGASGSGKSTLM-NILGCLDK   59 (648)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCC
T ss_conf             9989989999999996299999-99956999


No 375
>TIGR00665 DnaB replicative DNA helicase; InterPro: IPR007692   This family includes the replicative DNA helicases, helicase DnaB, which exhibit DNA-dependent ATPase activity. Helicase DnaB is a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of more than 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. Replication protein, GP12 from  Bacteriophage P22 also belongs to this family .; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication.
Probab=96.55  E-value=0.0085  Score=37.25  Aligned_cols=239  Identities=18%  Similarity=0.262  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             99999999998676188737970366553346550147727899972389726880799970687237899999987520
Q gi|255764460|r   13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        13 ~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      ...+......|.+.+-+.          -...+.-+|||...||...  +|+.++.++-+.+.|+.|||++++.++.++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~----------~~~~~~G~~~gf~~ld~~~--~G~~~~~l~~~~arP~~Gkt~~~~n~~~~~~  240 (465)
T TIGR00665       173 KEVLESTEDLIDKLYRKE----------NHLGVTGIPTGFYDLDKLT--GGFQPGDLIIVAARPSMGKTAFALNIAANAA  240 (465)
T ss_pred             HHHHHHHHHHHHHHHHCC----------CCCCCCCCCCCCHHHHHHH--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899999998888874023----------3222566653201344543--2677565588833787525889999998776


Q ss_pred             H------CCCEEEEEECCCCCCHHHHHHH----CCC------------------------HH-H-EEEEE-C-CCHHHHH
Q ss_conf             0------8987999973885566889981----988------------------------33-4-48972-5-8489999
Q gi|255764460|r   93 K------TGGTCAFVDAEHALDSIYARKL----GVD------------------------LK-N-LLISQ-P-DTGEQAL  134 (363)
Q Consensus        93 k------~g~~~~~iD~E~~~~~~~a~~~----Gvd------------------------~~-~-l~~~~-~-~~~E~~~  134 (363)
                      .      ....++++..|-+-+.-+.+.+    -+|                        .+ . +.+.. | -+..+.-
T Consensus       241 ~~~~~~~~~~~~~~fsle~~~~~~~~r~~~~~~~~~~~~~~~g~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~  320 (465)
T TIGR00665       241 NREKFDKEDKPVLFFSLEMSAEQLALRLLASESRIDSTKLRTGRLDDEEWEKLTKAMGELSDKLPLYIDDTSGITLTEIR  320 (465)
T ss_pred             HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf             43202423350378851467799999998765310134432003237788889999887530156224205775299999


Q ss_pred             HHHHHHHHCC-C-CCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-
Q ss_conf             9999997448-9-768998143332202655434555302247888767767777642017818999863411456654-
Q gi|255764460|r  135 EITDMLVRSG-A-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF-  211 (363)
Q Consensus       135 ~i~~~li~~~-~-~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~-  211 (363)
                      .-+..+-+.. . ++++++|-+.-+...+--   .++   ..+ .-.+..-|-+...+...++++|...|+.-.+-..- 
T Consensus       321 ~~~~~~~~~~~gp~~~~~~dyl~l~~~~~~~---~~~---~r~-~~~~~i~~~lk~~a~e~~~P~~al~~l~r~~e~r~d  393 (465)
T TIGR00665       321 SQARRLKRESGGPLGLILIDYLQLISGSKNS---YGD---NRH-QEVAEISRSLKALARELNVPVIALSQLSRSLEERKD  393 (465)
T ss_pred             HHHHHHHHHCCCCCEEHHHHHHHHHHCCCCC---CCC---CHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf             9999988641785010123457774100023---564---046-889999899998887741416656665322320134


Q ss_pred             CCCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCE-EEE----EEEEEEEEECCCCCCCCEEEEEEECC
Q ss_conf             665125--655311111124897504553445772-476----79998774057789851589998618
Q gi|255764460|r  212 GSPETT--TGGNALKFYSSVRLDIRRVGSIKDKDS-ITG----NQTRVKVVKNKMASPFKQVEFDIMYG  273 (363)
Q Consensus       212 g~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~-~iG----~~v~~kv~Knk~~~P~~~a~~~i~fg  273 (363)
                      -.|...  --.-++.--+.+.+.+.|...-+...+ ..+    ..+.+-+.|+|-+|..+   ..+.|.
T Consensus       394 ~rP~~~dlresG~~e~dad~~~~~~r~~~~~~~~~~~~~~~~~~~~e~~~~k~rnGp~G~---~~~~f~  459 (465)
T TIGR00665       394 KRPILSDLRESGSIEQDADLVLFLYRDEDYDKESEDKGGPKNLFEAELIIAKNRNGPTGT---VKLLFN  459 (465)
T ss_pred             CCCCHHHHHHCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCHHEEEEEEEEECCCCCCCE---EEEEEC
T ss_conf             563123333216753221012110001003654311245520000000000036787414---887544


No 376
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=96.54  E-value=0.036  Score=33.29  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             07999706872378999999875200898799997388
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      |.+-|+|--+.||||.+..+++...+.|..|+.||+.-
T Consensus         1 r~iai~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD~   38 (269)
T pfam00142         1 RKIAIYGKGGIGKSTTSQNTSAALAEMGKKVLIVGCDP   38 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             95899899976889999999999998799099984589


No 377
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.53  E-value=0.029  Score=33.85  Aligned_cols=102  Identities=24%  Similarity=0.291  Sum_probs=66.0

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCC-----CCEEEEEECCCCHHHHHHHHHHHHHH--HCCCEEEEEECCCCCCH-------H
Q ss_conf             5501477278999723897268-----80799970687237899999987520--08987999973885566-------8
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPK-----GRIVEIYGPESSGKTTLALHTIAQSQ--KTGGTCAFVDAEHALDS-------I  110 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~-----Gri~ei~G~~~sGKTtlal~~~a~~q--k~g~~~~~iD~E~~~~~-------~  110 (363)
                      .+...+-+..+..+++ -=+|.     +|++.+.||.|.||||....++|..-  +.-..+.+|.+. +++-       -
T Consensus       177 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD-tYRIGA~EQLk~  254 (407)
T COG1419         177 YEDLRYFSEKLRKLLL-SLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD-TYRIGAVEQLKT  254 (407)
T ss_pred             CCHHHHHHHHHHHHHH-HHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHH
T ss_conf             2123217999999887-64411112468579998998875887999999999753257606899714-411528999999


Q ss_pred             HHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             8998198833448972584899999999997448976899814333
Q gi|255764460|r  111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA  156 (363)
Q Consensus       111 ~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~a  156 (363)
                      ||+-+|+.+.   ++  .+.++.-+.+..|   ...|+|.||.+|-
T Consensus       255 Ya~im~vp~~---vv--~~~~el~~ai~~l---~~~d~ILVDTaGr  292 (407)
T COG1419         255 YADIMGVPLE---VV--YSPKELAEAIEAL---RDCDVILVDTAGR  292 (407)
T ss_pred             HHHHHCCCEE---EE--CCHHHHHHHHHHH---HCCCEEEEECCCC
T ss_conf             9998699559---96--3999999999985---3188899968998


No 378
>KOG0727 consensus
Probab=96.51  E-value=0.025  Score=34.32  Aligned_cols=113  Identities=26%  Similarity=0.431  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEECCCHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566889981-98833448972584899999999997
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQPDTGEQALEITDMLV  141 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~~~~~E~~~~i~~~li  141 (363)
                      |+-+-|=+.+||||+||||-|+ ..+|+..    .+.||-.-+   .+|..+. |--+        .-+-.+|    .|.
T Consensus       185 gidpprgvllygppg~gktml~-kava~~t----~a~firvvg---sefvqkylgegp--------rmvrdvf----rla  244 (408)
T KOG0727         185 GIDPPRGVLLYGPPGTGKTMLA-KAVANHT----TAAFIRVVG---SEFVQKYLGEGP--------RMVRDVF----RLA  244 (408)
T ss_pred             CCCCCCCEEEECCCCCCHHHHH-HHHHHCC----CHHEEEECC---HHHHHHHHCCCC--------HHHHHHH----HHH
T ss_conf             8899862277579997578999-9986126----111446301---899999855483--------8999999----987


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHCCCCCEEEE-EE
Q ss_conf             4489768998143332202655434555302247---888767767777642017818999-86
Q gi|255764460|r  142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ---ARLMSQALRKLTSSISRSKCILVF-IN  201 (363)
Q Consensus       142 ~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~---ar~ms~~lrkl~~~~~k~~~~~i~-iN  201 (363)
                      ++++..+|+||-+.+..++. +     |++-|..   .|++-..|..+-..-...|+-+|. +|
T Consensus       245 kenapsiifideidaiatkr-f-----daqtgadrevqril~ellnqmdgfdq~~nvkvimatn  302 (408)
T KOG0727         245 KENAPSIIFIDEIDAIATKR-F-----DAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN  302 (408)
T ss_pred             HCCCCCEEEEEHHHHHHHHH-C-----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf             61698379862245676641-2-----4444631899999999997514767666558998327


No 379
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.49  E-value=0.05  Score=32.40  Aligned_cols=28  Identities=32%  Similarity=0.535  Sum_probs=23.2

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             9726880799970687237899999987
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIA   89 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a   89 (363)
                      --++.|.++-|.||.++|||||.-.++.
T Consensus        25 l~v~~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          25 LSVEKGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf             9974896899999988888999999967


No 380
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.49  E-value=0.0043  Score=39.14  Aligned_cols=59  Identities=29%  Similarity=0.492  Sum_probs=36.5

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC----------------------------CCEE
Q ss_conf             014772789997238972688079997068723789999998752008----------------------------9879
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----------------------------GGTC   98 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~----------------------------g~~~   98 (363)
                      .+..+. .|..++-.+-+|.  + -+||||||||||+|. ++|...+.                            ...+
T Consensus        21 llg~~~-~L~~~i~~~~~~s--~-Il~GPPG~GKTTlA~-iiA~~~~~~f~~lnA~~~gv~dir~ii~~a~~~~~~~~ti   95 (417)
T PRK13342         21 LLGPGK-PLRRMIEAGRLSS--M-ILWGPPGTGKTTLAR-IIAGATDAEFEALSAVTSGVKDLREVIEEAKQSRLGRRTI   95 (417)
T ss_pred             HHCCCH-HHHHHHHCCCCCE--E-EEECCCCCCHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             608971-9999997699975--9-988969998999999-9999868988996141038899999999988631489659


Q ss_pred             EEEECCCCCCHH
Q ss_conf             999738855668
Q gi|255764460|r   99 AFVDAEHALDSI  110 (363)
Q Consensus        99 ~~iD~E~~~~~~  110 (363)
                      +|||==|.|+..
T Consensus        96 lfiDEIHRfnK~  107 (417)
T PRK13342         96 LFIDEIHRFNKA  107 (417)
T ss_pred             EEEECHHHCCHH
T ss_conf             999782005889


No 381
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.49  E-value=0.041  Score=32.93  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=32.8

Q ss_pred             CCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             80799970-687237899999987520089879999738
Q gi|255764460|r   67 GRIVEIYG-PESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        67 Gri~ei~G-~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      +|++-|+. --+.||||+|.++++...++|..++.||..
T Consensus         2 ~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlliD~D   40 (270)
T PRK10818          2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD   40 (270)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             749999789998418999999999999779968999689


No 382
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the  protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.49  E-value=0.041  Score=32.95  Aligned_cols=37  Identities=27%  Similarity=0.367  Sum_probs=34.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             0799970687237899999987520089879999738
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      |.+-|||--+.||||++..+.+..++.|..|+.||+.
T Consensus         1 ~~iaiyGKGGVGKTTts~NLaaaLA~~G~rVl~iD~D   37 (212)
T cd02117           1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD   37 (212)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9599988983568778999999999869969999038


No 383
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132   Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.49  E-value=0.0074  Score=37.63  Aligned_cols=74  Identities=27%  Similarity=0.445  Sum_probs=48.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHHH-HHCCCH-HHE----------EEEECC
Q ss_conf             726880799970687237899999987520089879999738--855668899-819883-344----------897258
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIYAR-KLGVDL-KNL----------LISQPD  128 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~a~-~~Gvd~-~~l----------~~~~~~  128 (363)
                      -|+.|..+-|.||+|||||||+=-+=+=...+.|.+ .||--  .-.||.|.+ ++||=+ +++          -.+.|.
T Consensus       487 ~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqV-LVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~  565 (703)
T TIGR01846       487 DIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQV-LVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNPG  565 (703)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE-EECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCCC
T ss_conf             657865799872789867899999886148888747-7703000101852010223023400021012278898517777


Q ss_pred             -CHHHHHHHH
Q ss_conf             -489999999
Q gi|255764460|r  129 -TGEQALEIT  137 (363)
Q Consensus       129 -~~E~~~~i~  137 (363)
                       ..|++..++
T Consensus       566 ~~~E~Vi~AA  575 (703)
T TIGR01846       566 ASVEHVIAAA  575 (703)
T ss_pred             CCHHHHHHHH
T ss_conf             6989999998


No 384
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.48  E-value=0.054  Score=32.18  Aligned_cols=112  Identities=26%  Similarity=0.280  Sum_probs=64.9

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHCCCHHHE----EEEECC------------
Q ss_conf             80799970687237899999987520089879999738--855668899819883344----897258------------
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIYARKLGVDLKNL----LISQPD------------  128 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~a~~~Gvd~~~l----~~~~~~------------  128 (363)
                      -|++-+.|--|.||||+|-.++..+.+.|..++.+.++  |++...+-..+|-++.++    ....-|            
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v   81 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEV   81 (322)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHH
T ss_conf             37999936885458999999999999759907999848987447654230478511258887546606899999999999


Q ss_pred             -------------------------CHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             -------------------------48999--999999974489768998143332202655434555302247888767
Q gi|255764460|r  129 -------------------------TGEQA--LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ  181 (363)
Q Consensus       129 -------------------------~~E~~--~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~  181 (363)
                                               -.+++  |..+..+..++.+|.||+|....-.+-          .+=..++.|+.
T Consensus        82 ~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TL----------RlL~lP~~~~~  151 (322)
T COG0003          82 KDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTL----------RLLSLPEVLGW  151 (322)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH----------HHHCCHHHHHH
T ss_conf             99997412655421257889860988899999999999875268988998489708788----------87415788999


Q ss_pred             HHHHHHH
Q ss_conf             7677776
Q gi|255764460|r  182 ALRKLTS  188 (363)
Q Consensus       182 ~lrkl~~  188 (363)
                      +|+++..
T Consensus       152 ~~~~~~~  158 (322)
T COG0003         152 YLEKLFK  158 (322)
T ss_pred             HHHHHHH
T ss_conf             9985202


No 385
>KOG3928 consensus
Probab=96.48  E-value=0.024  Score=34.41  Aligned_cols=69  Identities=14%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH---HCCCHHHE-EEEECCCHHHH
Q ss_conf             3897268807999706872378999999875200898799997388556688998---19883344-89725848999
Q gi|255764460|r   60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK---LGVDLKNL-LISQPDTGEQA  133 (363)
Q Consensus        60 g~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~---~Gvd~~~l-~~~~~~~~E~~  133 (363)
                      ..-+.|.+|++ ++|+++||||-..-|++.-|..++-.+++|-.-    +.|..+   ++-|-+.- ++.||..++..
T Consensus       173 ~d~~~P~~r~v-L~Ge~GtGKSiaL~qa~h~a~~~~wlIlhip~a----~~w~~~~~~~~y~~~~kg~~dqP~~a~~~  245 (461)
T KOG3928         173 VDPMHPVKRFV-LDGEPGTGKSIALAQAVHYAADQKWLILHIPYA----ELWTNGRKDYSYDSDLKGLWDQPLYAKKI  245 (461)
T ss_pred             CCCCCCCEEEE-EECCCCCCHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             36567635899-857998762059999999873178599977857----87631631102455112441383689999


No 386
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.47  E-value=0.029  Score=33.93  Aligned_cols=139  Identities=17%  Similarity=0.263  Sum_probs=75.7

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCC--HHHHHHH--
Q ss_conf             6550147727899972389726880799970687237899999987520089----8799997388556--6889981--
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALD--SIYARKL--  115 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~--~~~a~~~--  115 (363)
                      ..+.+.||+.++|.++.   +.+|.=+-|+|..+.|||+|+.+++.+++-.+    -.|+|.-.=..-+  .++.+.+  
T Consensus       123 ~~e~l~TGI~~ID~l~p---l~rGQr~~If~gsGvgks~l~~~i~~qa~~~~~~~~~~vV~~~iGeR~~E~~e~~~~~~~  199 (460)
T PRK04196        123 PEEFIQTGISAIDGLNT---LVRGQKLPIFSGSGLPHNELAAQIARQAKVLGSEEKFAVVFAAMGITFEEANFFMDEFEE  199 (460)
T ss_pred             CCCEECCCCEEEECCCC---EECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEECHHHHHHHHHHHH
T ss_conf             88461379679616433---224757655338998811699999998775057888159997320760689999998874


Q ss_pred             -CCCHHHE-EEE-ECC--CHH------HHHHHHHHHH-HCCCCCEEEEECCCCCC-CHHHHHHHHHH-----HCCCHHHH
Q ss_conf             -9883344-897-258--489------9999999997-44897689981433322-02655434555-----30224788
Q gi|255764460|r  116 -GVDLKNL-LIS-QPD--TGE------QALEITDMLV-RSGAVDIIVIDSVAALT-PRAEIEGDMGE-----SLPGMQAR  177 (363)
Q Consensus       116 -Gvd~~~l-~~~-~~~--~~E------~~~~i~~~li-~~~~~~liViDSi~al~-p~~Eie~~~~d-----~~~g~~ar  177 (363)
                       |+ +++. +++ +.+  .++      -++.++|-+- ..|.-.|+++||++..+ -..|+-..+++     ...+....
T Consensus       200 ~g~-m~rtvlv~~ts~~p~~~R~~~~~~a~tiAEyfr~d~G~~VL~~~dd~tr~A~A~REis~~lge~P~~~GYP~~l~s  278 (460)
T PRK04196        200 TGA-LERSVLFLNLADDPAIERILTPRMALTTAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYT  278 (460)
T ss_pred             CCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf             486-3200475135889889988887666578999998569957999758078888766888754799987776862688


Q ss_pred             HHHHHHHHH
Q ss_conf             876776777
Q gi|255764460|r  178 LMSQALRKL  186 (363)
Q Consensus       178 ~ms~~lrkl  186 (363)
                      .+++++-+-
T Consensus       279 ~la~l~ERA  287 (460)
T PRK04196        279 DLATLYERA  287 (460)
T ss_pred             HHHHHHHHC
T ss_conf             868888723


No 387
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.46  E-value=0.0072  Score=37.70  Aligned_cols=82  Identities=22%  Similarity=0.356  Sum_probs=50.2

Q ss_pred             HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-------------------------CC---CEEEEEECCCC
Q ss_conf             999723897268807999706872378999999875200-------------------------89---87999973885
Q gi|255764460|r   55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------------------------TG---GTCAFVDAEHA  106 (363)
Q Consensus        55 lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-------------------------~g---~~~~~iD~E~~  106 (363)
                      |..++-.|.++.  ++ +||||++||||+|--++..+..                         .+   ..++|||-=|.
T Consensus        39 lrr~v~~~~l~S--mI-l~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHR  115 (436)
T COG2256          39 LRRAVEAGHLHS--MI-LWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHR  115 (436)
T ss_pred             HHHHHHCCCCCE--EE-EECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf             899996499860--57-778999888899999987617766995152346799999999999987258834998722533


Q ss_pred             CCHH-------HHHH-----HCCCH------------H--HEEEEECCCHHHHHHHHHH
Q ss_conf             5668-------8998-----19883------------3--4489725848999999999
Q gi|255764460|r  107 LDSI-------YARK-----LGVDL------------K--NLLISQPDTGEQALEITDM  139 (363)
Q Consensus       107 ~~~~-------~a~~-----~Gvd~------------~--~l~~~~~~~~E~~~~i~~~  139 (363)
                      |++.       ..|+     +|--+            +  ++++..|-+.|+...++..
T Consensus       116 fnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r  174 (436)
T COG2256         116 FNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR  174 (436)
T ss_pred             CCHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHEEEEECCCHHHHHHHHHH
T ss_conf             37445655103324886899962678987140388861104156516998999999999


No 388
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.45  E-value=0.026  Score=34.17  Aligned_cols=88  Identities=25%  Similarity=0.286  Sum_probs=54.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCCHHHHHHH--CCCHHHEEEEECC--------CHH
Q ss_conf             880799970687237899999987520089----87999973885566889981--9883344897258--------489
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALDSIYARKL--GVDLKNLLISQPD--------TGE  131 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~~~~a~~~--Gvd~~~l~~~~~~--------~~E  131 (363)
                      +|.=-.|..||.+|||+|.-+++....+.-    -.++.||--    |+-...+  .|. -.++.+.-|        .+|
T Consensus       131 kGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDER----PEEVTdm~r~v~-gEVvaSTfD~~~~~h~~vAe  205 (379)
T PRK12608        131 KGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDER----PEEVTDMKRSVK-GEVYASTFDRPYDRHIRVAE  205 (379)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHCC-EEEEEECCCCCHHHHHHHHH
T ss_conf             5740127458986578999999999985799848999981689----358888886237-07999779899899999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             999999999744897689981433322
Q gi|255764460|r  132 QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       132 ~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      -+++.+..|+..|.--+|++||++-|.
T Consensus       206 l~lerAkrlvE~G~dVvillDSiTRla  232 (379)
T PRK12608        206 LVLERAKRLVEEGKDVVILLDSLTRLA  232 (379)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             999999999876996899965177889


No 389
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.43  E-value=0.0049  Score=38.75  Aligned_cols=40  Identities=33%  Similarity=0.562  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26880799970687237899999987520089879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|.++-|.||+||||||| |.+++...+...--++++..
T Consensus        21 i~~Ge~~~i~GpSGsGKSTL-L~~i~gl~~p~sG~i~~~g~   60 (206)
T TIGR03608        21 IEKGKMVAIVGESGSGKSTL-LNIIGLLEKPDSGQVYLNGQ   60 (206)
T ss_pred             ECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCEEEEECCE
T ss_conf             86998999987999709999-99997599989759999999


No 390
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.42  E-value=0.0077  Score=37.52  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             8723789999998752008987999973885
Q gi|255764460|r   76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHA  106 (363)
Q Consensus        76 ~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~  106 (363)
                      -|+||||+|.+++...++.|..++.||....
T Consensus         9 GGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ   39 (104)
T cd02042           9 GGVGKTTTAVNLAAALARRGKRVLLIDLDPQ   39 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9876899999999999977992999977988


No 391
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.40  E-value=0.023  Score=34.54  Aligned_cols=102  Identities=21%  Similarity=0.268  Sum_probs=60.1

Q ss_pred             CCCCCCHHHHHHHC-----CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC--EEEEEECCCCCCHHHHHH-----
Q ss_conf             01477278999723-----897268807999706872378999999875200898--799997388556688998-----
Q gi|255764460|r   47 VVSSGSLGLDIALG-----IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG--TCAFVDAEHALDSIYARK-----  114 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg-----~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~--~~~~iD~E~~~~~~~a~~-----  114 (363)
                      ++.+.+-.+=+++.     ..|-+.+-+ -|||+.|+|||.|+.-+...+.+.+.  .++|+.+|.-+. +++..     
T Consensus        89 Fv~g~~N~~A~aa~~~va~~~g~~~npl-fi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-~~v~a~~~~~  166 (408)
T COG0593          89 FVVGPSNRLAYAAAKAVAENPGGAYNPL-FIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-DFVKALRDNE  166 (408)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHH-HHHHHHHHHH
T ss_conf             2047744999999999875668868957-9987999978999999999998629986488504899899-9999988504


Q ss_pred             -------HCCC---HHHEEE--EECCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             -------1988---334489--7258489999999999744897689981
Q gi|255764460|r  115 -------LGVD---LKNLLI--SQPDTGEQALEITDMLVRSGAVDIIVID  152 (363)
Q Consensus       115 -------~Gvd---~~~l~~--~~~~~~E~~~~i~~~li~~~~~~liViD  152 (363)
                             ..+|   .|.+-.  -...+.|+.|++...|...+.  -||+=
T Consensus       167 ~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvlt  214 (408)
T COG0593         167 MEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLT  214 (408)
T ss_pred             HHHHHHHHCCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCCC--EEEEE
T ss_conf             8888876426735551386756771579999999998885088--79997


No 392
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.40  E-value=0.065  Score=31.67  Aligned_cols=41  Identities=22%  Similarity=0.273  Sum_probs=28.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             726880799970687237899999987520089879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      -++.|.++-|.|+.+||||||+..+..-.....|.+. +|.+
T Consensus        20 ~i~~Gei~~liG~nGsGKSTL~~~l~Gl~~~~~G~i~-~~g~   60 (491)
T PRK10982         20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL-FQGK   60 (491)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE-ECCE
T ss_conf             9989969999899998199999999569889965999-9999


No 393
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.39  E-value=0.0037  Score=39.53  Aligned_cols=44  Identities=39%  Similarity=0.580  Sum_probs=30.9

Q ss_pred             EEEEECCCCHHHHHHHHHHH-HHHHC-----------------------CCEEEEEECCCCCCHHHHHH
Q ss_conf             99970687237899999987-52008-----------------------98799997388556688998
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIA-QSQKT-----------------------GGTCAFVDAEHALDSIYARK  114 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a-~~qk~-----------------------g~~~~~iD~E~~~~~~~a~~  114 (363)
                      +.+|||||=|||||| |++| +.+..                       -|.|+|||==|++.|.--|-
T Consensus        33 ~LL~GPPGLGKTTLA-~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt~L~~gDVLFIDEIHRL~p~~EE~  100 (305)
T TIGR00635        33 LLLYGPPGLGKTTLA-HIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAIEEL  100 (305)
T ss_pred             EEEECCCCCCHHHHH-HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCHHHHHH
T ss_conf             663175687467899-99999838932674067554757899999705689631012565048334531


No 394
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.39  E-value=0.082  Score=31.03  Aligned_cols=60  Identities=22%  Similarity=0.184  Sum_probs=48.5

Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             789997238972688079997068723789999998752008987999973885566889981
Q gi|255764460|r   53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL  115 (363)
Q Consensus        53 ~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~  115 (363)
                      ..++.+...   ...+...++|.++||||-+-+++++.+-++|..|+++=-|-++.+.+.+++
T Consensus       175 ~a~~~i~~~---~~~~~~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl  234 (699)
T PRK05580        175 AALAAIRAA---GGFSAFLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARF  234 (699)
T ss_pred             HHHHHHHHC---CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf             999999855---888717874789860799999999999973997899917678789999999


No 395
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.39  E-value=0.067  Score=31.58  Aligned_cols=95  Identities=15%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE---ECCCCCCHHHHHHHCCCHHHEE------EEECC----
Q ss_conf             9726880799970687237899999987520089879999---7388556688998198833448------97258----
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---DAEHALDSIYARKLGVDLKNLL------ISQPD----  128 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i---D~E~~~~~~~a~~~Gvd~~~l~------~~~~~----  128 (363)
                      -+--.| ++.||=-.+=||||-|+-.+..+.-.|..|+++   -.........+-+++-..+-+-      +..++    
T Consensus        17 ~~~~kG-lI~VYTGdGKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~g~~~~~~~~~~~e~   95 (178)
T PRK07414         17 PYTVEG-LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDQPIQLGQNLDWVRCDLPRCLDTPHLDES   95 (178)
T ss_pred             CCCCCC-EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCHH
T ss_conf             856541-7999957999808999999999953998799999755897301689997268968997477754668888899


Q ss_pred             ---CHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             ---48999999999974489768998143332
Q gi|255764460|r  129 ---TGEQALEITDMLVRSGAVDIIVIDSVAAL  157 (363)
Q Consensus       129 ---~~E~~~~i~~~li~~~~~~liViDSi~al  157 (363)
                         ...++++.+...+.++..|+||+|=+...
T Consensus        96 ~~~a~~~~~~~a~~~l~~g~~DlvVLDEi~~A  127 (178)
T PRK07414         96 ENKALQELWQYTQQVVDEGKYELVVLDELSLA  127 (178)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf             99999999999999986889888997036899


No 396
>cd03290 ABCC_SUR1_N The SUR domain 1.  The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.38  E-value=0.0048  Score=38.82  Aligned_cols=38  Identities=26%  Similarity=0.497  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             72688079997068723789999998752008987999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      =+|+|.++-|.|+.+||||||...++.-.+...|.+.|
T Consensus        23 ~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I~~   60 (218)
T cd03290          23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW   60 (218)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf             98699999999999980999999985556567764998


No 397
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.38  E-value=0.021  Score=34.82  Aligned_cols=74  Identities=20%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCH-HHHHHHCCC-----------HHHEEEEECC
Q ss_conf             726880799970687237899999987520089879999738--85566-889981988-----------3344897258
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDS-IYARKLGVD-----------LKNLLISQPD  128 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~-~~a~~~Gvd-----------~~~l~~~~~~  128 (363)
                      =+|+|..+-|.||+|||||||+--++.-..-..|.+ .||..  ..++. ++-+.+|+=           -+|+.+..|+
T Consensus       363 ~i~~Ge~vaiVG~SGsGKSTL~~LL~r~ydp~~G~I-~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~TI~eNi~~g~~~  441 (575)
T PRK11160        363 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LLNGQPIASYSEAALRQAISVVSQRVHLFSGTLRDNLLLAAPN  441 (575)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf             976998899988999759999999862367899889-9998975638889998761356777602588678998725898


Q ss_pred             CH-HHHHHHH
Q ss_conf             48-9999999
Q gi|255764460|r  129 TG-EQALEIT  137 (363)
Q Consensus       129 ~~-E~~~~i~  137 (363)
                      .. |+..+.+
T Consensus       442 atdee~~~al  451 (575)
T PRK11160        442 ATDEALIEVL  451 (575)
T ss_pred             CCHHHHHHHH
T ss_conf             7899999999


No 398
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.37  E-value=0.014  Score=35.81  Aligned_cols=80  Identities=26%  Similarity=0.377  Sum_probs=50.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--------CCCCHHHHHHHCCC---HHHE----EEEECCCHHH
Q ss_conf             0799970687237899999987520089879999738--------85566889981988---3344----8972584899
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--------HALDSIYARKLGVD---LKNL----LISQPDTGEQ  132 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--------~~~~~~~a~~~Gvd---~~~l----~~~~~~~~E~  132 (363)
                      +++-|+||.+||||.+|+.++.   +.|+-++=.|+=        +|-.|...+.-|+-   +|-+    -|.-.+..++
T Consensus         4 ~~i~I~GPTAsGKT~lai~LAk---~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~   80 (308)
T COG0324           4 KLIVIAGPTASGKTALAIALAK---RLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD   80 (308)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH---HCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf             3799989887577899999999---8299289302355318886307999999985899787545683225549999999


Q ss_pred             HHHHHHHHHHCCCCCEEE
Q ss_conf             999999997448976899
Q gi|255764460|r  133 ALEITDMLVRSGAVDIIV  150 (363)
Q Consensus       133 ~~~i~~~li~~~~~~liV  150 (363)
                      +...++.+...|.+-++|
T Consensus        81 a~~~i~~i~~rgk~pIlV   98 (308)
T COG0324          81 ALAAIDDILARGKLPILV   98 (308)
T ss_pred             HHHHHHHHHHCCCCCEEE
T ss_conf             999999999689987997


No 399
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=96.37  E-value=0.064  Score=31.71  Aligned_cols=106  Identities=25%  Similarity=0.390  Sum_probs=62.9

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCCCC-------CHHHHHHHCCCHHHEEE
Q ss_conf             899972389726880799970687237899999987520089879999--738855-------66889981988334489
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--DAEHAL-------DSIYARKLGVDLKNLLI  124 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i--D~E~~~-------~~~~a~~~Gvd~~~l~~  124 (363)
                      -|+.++...|  +...+-|.|+|+.|||||--.++....+.|..++.+  |--..+       |.-++..+..|..-++-
T Consensus        18 ll~~~~~~~g--~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiR   95 (267)
T pfam03308        18 LLRRLMPLTG--RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIR   95 (267)
T ss_pred             HHHHHHHHCC--CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEE
T ss_conf             9999874359--95599876899887999999999999968986899997899988886300107777650589985886


Q ss_pred             EECCCHH------HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             7258489------999999999744897689981433322026554
Q gi|255764460|r  125 SQPDTGE------QALEITDMLVRSGAVDIIVIDSVAALTPRAEIE  164 (363)
Q Consensus       125 ~~~~~~E------~~~~i~~~li~~~~~~liViDSi~al~p~~Eie  164 (363)
                      ..|..+.      ...+.+ .+++.-.+|+|+|-.|+.=  +.|++
T Consensus        96 s~~srg~lGGls~~t~~~i-~lleaaGfD~IivETVGVG--QsE~~  138 (267)
T pfam03308        96 SSPSRGALGGLSRATREAI-LLLDAAGFDVIIIETVGVG--QSEVD  138 (267)
T ss_pred             ECCCCCCCCCCCHHHHHHH-HHHHHCCCCEEEEECCCCC--CCCHH
T ss_conf             4577888887147699999-9999779999999247777--53035


No 400
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.34  E-value=0.023  Score=34.49  Aligned_cols=139  Identities=22%  Similarity=0.316  Sum_probs=72.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHCCC--HHHEEEEECCCHHHHHHHHH
Q ss_conf             726880799970687237899999987520089879999738--85566889981988--33448972584899999999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIYARKLGVD--LKNLLISQPDTGEQALEITD  138 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~a~~~Gvd--~~~l~~~~~~~~E~~~~i~~  138 (363)
                      -++.|.|+-+-|+.++||||+.-.++.......|.+.| +.+  ..+.|....+.|+-  +..--+++.-|+||-+.+.-
T Consensus        25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~-~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~  103 (237)
T COG0410          25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIF-DGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA  103 (237)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE-CCEECCCCCHHHHHHCCEEECCCCCCCHHHCCHHHHHHHHH
T ss_conf             87689889998999888899999985898788706998-98356779978998577686752136100075999874231


Q ss_pred             HHHHCCCCCEEEEECCCCCCCH-HHHHHH----H--HHHCC---------------------CHHHHHHHHHHHHHHHHH
Q ss_conf             9974489768998143332202-655434----5--55302---------------------247888767767777642
Q gi|255764460|r  139 MLVRSGAVDIIVIDSVAALTPR-AEIEGD----M--GESLP---------------------GMQARLMSQALRKLTSSI  190 (363)
Q Consensus       139 ~li~~~~~~liViDSi~al~p~-~Eie~~----~--~d~~~---------------------g~~ar~ms~~lrkl~~~~  190 (363)
                      ...+.....--.+|.+=.|+|+ +|.-+.    +  ++.||                     |+.+.+...-++.+..+.
T Consensus       104 ~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~  183 (237)
T COG0410         104 YARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR  183 (237)
T ss_pred             HCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             02453100011389999978638988408446778199999999999961998899658866768899999999999999


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             017818999863
Q gi|255764460|r  191 SRSKCILVFINQ  202 (363)
Q Consensus       191 ~k~~~~~i~iNQ  202 (363)
                      .+...+++.+-|
T Consensus       184 ~~~g~tIlLVEQ  195 (237)
T COG0410         184 KEGGMTILLVEQ  195 (237)
T ss_pred             HCCCCEEEEEEC
T ss_conf             748948999942


No 401
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.33  E-value=0.042  Score=32.90  Aligned_cols=81  Identities=25%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             HHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--CEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHH
Q ss_conf             99972389726880799970687237899999987520089--8799997388556688998198833448972584899
Q gi|255764460|r   55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ  132 (363)
Q Consensus        55 lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g--~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~  132 (363)
                      |-..+-.|-+|-   ..++||||+||||+|+.++.+.-..+  ..++.+++-   |     ..|+|             .
T Consensus        28 L~~~i~~~~~ph---lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnas---d-----~r~id-------------~   83 (318)
T PRK00440         28 LKSFVKEKNMPH---LLFAGPPGTGKTTAALALARELYGEYWRENFLELNAS---D-----ERGID-------------V   83 (318)
T ss_pred             HHHHHHCCCCCE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCC---C-----CCCHH-------------H
T ss_conf             999998799866---9888959988999999999997698643476895164---5-----66717-------------8


Q ss_pred             HHHHHHHHHHC-----CCCCEEEEECCCCCCC
Q ss_conf             99999999744-----8976899814333220
Q gi|255764460|r  133 ALEITDMLVRS-----GAVDIIVIDSVAALTP  159 (363)
Q Consensus       133 ~~~i~~~li~~-----~~~~liViDSi~al~p  159 (363)
                      .-+.+..+.+.     ....+||+|-+..|.+
T Consensus        84 vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~  115 (318)
T PRK00440         84 IRNKIKEFARTAPVGGAPFKIIFLDEADNLTS  115 (318)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCH
T ss_conf             99999999972677899738999868553225


No 402
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively.  Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP.  HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM.  The two HisP subunits form a homodimer within the complex.  The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems.  All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria.  The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.33  E-value=0.0058  Score=38.32  Aligned_cols=42  Identities=33%  Similarity=0.506  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||++|||||| |.+++...+...--+++|.+.
T Consensus        22 ~i~~Ge~~~ivGpSGsGKSTL-L~~i~gL~~p~~G~i~i~g~~   63 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTL-LRCINLLEEPDSGTIIIDGLK   63 (213)
T ss_pred             EECCCCEEEEECCCCCHHHHH-HHHHHCCCCCCCEEEEECCEE
T ss_conf             988998999999998449999-999981999986499999999


No 403
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.33  E-value=0.081  Score=31.07  Aligned_cols=97  Identities=24%  Similarity=0.384  Sum_probs=63.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCCCC-------CHHHHHHHCCCHHHEEEEECCC---HH--
Q ss_conf             880799970687237899999987520089879999--738855-------6688998198833448972584---89--
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--DAEHAL-------DSIYARKLGVDLKNLLISQPDT---GE--  131 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i--D~E~~~-------~~~~a~~~Gvd~~~l~~~~~~~---~E--  131 (363)
                      +-.++-|.|+|++|||||-=.+....+..|..|+.|  |.-..|       |.-++.++-.++.-++-.-|..   ++  
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf             98378731799886688999999999977967899998899998785301207667764469981784268776510166


Q ss_pred             -HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf             -99999999974489768998143332202655
Q gi|255764460|r  132 -QALEITDMLVRSGAVDIIVIDSVAALTPRAEI  163 (363)
Q Consensus       132 -~~~~i~~~li~~~~~~liViDSi~al~p~~Ei  163 (363)
                       ...+++ .++.-..+|+|||--++.=.+..++
T Consensus       130 ~at~~~i-~~ldAaG~DvIIVETVGvGQsev~I  161 (323)
T COG1703         130 RATREAI-KLLDAAGYDVIIVETVGVGQSEVDI  161 (323)
T ss_pred             HHHHHHH-HHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf             8899999-9998618988999814788415577


No 404
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=96.33  E-value=0.0058  Score=38.31  Aligned_cols=45  Identities=31%  Similarity=0.533  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             7268807999706872378999999875200898799997388556
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD  108 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~  108 (363)
                      -+|.|+++-+-||+||||||| |.++|...+.+---++|.......
T Consensus        22 ~v~~G~lvaLLGPSGSGKsTL-LR~iAGLe~pd~G~I~~~G~D~t~   66 (241)
T TIGR00968        22 EVPTGSLVALLGPSGSGKSTL-LRVIAGLEQPDSGRIILNGRDATR   66 (241)
T ss_pred             EECCCEEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEEEECCCCC
T ss_conf             743852798546898737899-999835799984269985200221


No 405
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.29  E-value=0.0092  Score=37.04  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=25.1

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             89997238972688079997068723789999998752
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS   91 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~   91 (363)
                      .|-.++-.|-+|-   ..++||+|+||||+|.-++.+.
T Consensus        26 ~L~~~~~~~~~ph---lLf~GPpG~GKTt~A~~lA~~l   60 (337)
T PRK12402         26 HLSALAASGNLPH---LVVYGPSGSGKTAAVRALAREL   60 (337)
T ss_pred             HHHHHHHCCCCCE---EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9999997799876---9888929848999999999996


No 406
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.29  E-value=0.016  Score=35.46  Aligned_cols=38  Identities=34%  Similarity=0.510  Sum_probs=32.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             880799970687237899999987520089879999738
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      .+ .+.+.||-.||||||+-.++-..-..|..+++||+.
T Consensus        73 ~~-~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD  110 (398)
T COG1341          73 VG-VVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD  110 (398)
T ss_pred             CC-EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             73-899989867678899999998876447418999689


No 407
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.28  E-value=0.035  Score=33.40  Aligned_cols=85  Identities=26%  Similarity=0.353  Sum_probs=50.8

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--------CCCCHHHHHHHCCCHHHEEEEEC-------CCH
Q ss_conf             880799970687237899999987520089879999738--------85566889981988334489725-------848
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--------HALDSIYARKLGVDLKNLLISQP-------DTG  130 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--------~~~~~~~a~~~Gvd~~~l~~~~~-------~~~  130 (363)
                      .-+++-|.||.+||||.||+.++.   +.++.++=.|+=        ++--|.-.+.-|+.--=+=++.|       +..
T Consensus         3 ~~~ii~i~GpTasGKs~la~~la~---~~~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~~~~~e~~sv~~f~   79 (304)
T PRK00091          3 KPKLIVLVGPTASGKTALAIELAK---RLNGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDILDPTESYSAADFQ   79 (304)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH---HCCCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEEECCCCCEEHHHHH
T ss_conf             997799989886589999999999---87998994126887499986889999999818981243456588754499999


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             99999999997448976899814
Q gi|255764460|r  131 EQALEITDMLVRSGAVDIIVIDS  153 (363)
Q Consensus       131 E~~~~i~~~li~~~~~~liViDS  153 (363)
                      +++..+++.+.+.+.+.+||=-|
T Consensus        80 ~~a~~~i~~i~~~~kiPIiVGGT  102 (304)
T PRK00091         80 RDALAAIEDITARGKLPILVGGT  102 (304)
T ss_pred             HHHHHHHHHHHHCCCCCEEECCC
T ss_conf             99999999999769987898083


No 408
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129   Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK  resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=96.27  E-value=0.049  Score=32.46  Aligned_cols=106  Identities=23%  Similarity=0.381  Sum_probs=65.2

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCC-------HHHHHHHC------CC
Q ss_conf             899972389726880799970687237899999987520089879999738--8556-------68899819------88
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALD-------SIYARKLG------VD  118 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~-------~~~a~~~G------vd  118 (363)
                      =|+.++..-|  +-.++-|.|.|+.|||||.=.+.....+.|..|+.|--.  -.|+       .-++.++-      .|
T Consensus        27 ll~~i~p~~G--nA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~d  104 (333)
T TIGR00750        27 LLERILPKTG--NAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTD  104 (333)
T ss_pred             HHHHHHHHCC--CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9998624327--90787664688885777999998999765976899988797597551454568877544222233228


Q ss_pred             HHHEEEEECCCHHH------HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             33448972584899------99999999744897689981433322026554
Q gi|255764460|r  119 LKNLLISQPDTGEQ------ALEITDMLVRSGAVDIIVIDSVAALTPRAEIE  164 (363)
Q Consensus       119 ~~~l~~~~~~~~E~------~~~i~~~li~~~~~~liViDSi~al~p~~Eie  164 (363)
                      +.=++-.-|..+.-      +.+++ .|+.--.+|+|+|--|+.=  +.|+|
T Consensus       105 Pg~FIRs~ptrG~lGGls~at~~~~-~lldA~G~DVI~vETVGVG--QSEVd  153 (333)
T TIGR00750       105 PGVFIRSMPTRGSLGGLSKATRELV-KLLDAAGYDVILVETVGVG--QSEVD  153 (333)
T ss_pred             CCCEECCCCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEEECCC--HHHHH
T ss_conf             9856767766675257879999999-9998638987999841575--24878


No 409
>PRK04296 thymidine kinase; Provisional
Probab=96.27  E-value=0.022  Score=34.66  Aligned_cols=89  Identities=19%  Similarity=0.308  Sum_probs=58.3

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHCCCHHHEEEEECCCHHHHHHHHHHHHH
Q ss_conf             880799970687237899999987520089879999738--855668-89981988334489725848999999999974
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~  142 (363)
                      .|+++-|+||--|||||-.++.+...+..|..++.|-..  ..++.+ ...+.|.-.+-..   ....++.++.+.....
T Consensus         1 mg~L~~i~GpMfSGKTteLi~~~~~~~~~gkkvl~~kp~~D~Ry~~~~I~Sh~g~~~~~~~---v~~~~~i~~~~~~~~~   77 (197)
T PRK04296          1 MAKLYFIYGAMNSGKSTELLQRAYNYEERGMKVLVFTPAIDDRYGEGKVVSRIGLSREAIL---ISSDTDIFELIEEEHE   77 (197)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEECCCCCEEEEEE---ECCHHHHHHHHHHHHC
T ss_conf             9559999934278889999999999998799599998534465777857867898346899---4878999999987630


Q ss_pred             CCCCCEEEEECCCCC
Q ss_conf             489768998143332
Q gi|255764460|r  143 SGAVDIIVIDSVAAL  157 (363)
Q Consensus       143 ~~~~~liViDSi~al  157 (363)
                      ....++|.||=.--+
T Consensus        78 ~~~~dvI~IDEaQFf   92 (197)
T PRK04296         78 GGKIDCVLIDEAQFL   92 (197)
T ss_pred             CCCCCEEEECCHHCC
T ss_conf             478568997202127


No 410
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.26  E-value=0.0047  Score=38.90  Aligned_cols=40  Identities=28%  Similarity=0.527  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26880799970687237899999987520089879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|+.+-+-|+.+||||||.+|+...-+-+.|.++| |-+
T Consensus        15 ~~~G~~~aLlG~NGaGKsTLl~~LnG~LrP~~G~v~~-dG~   54 (190)
T TIGR01166        15 VERGEVLALLGANGAGKSTLLLHLNGLLRPQSGKVLL-DGE   54 (190)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE-CCE
T ss_conf             2057168987289985789988743677797555876-785


No 411
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=96.26  E-value=0.096  Score=30.59  Aligned_cols=106  Identities=20%  Similarity=0.277  Sum_probs=62.4

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCCCCC-------HHHHHHHCCCHHHEEE
Q ss_conf             899972389726880799970687237899999987520089879999--7388556-------6889981988334489
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--DAEHALD-------SIYARKLGVDLKNLLI  124 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i--D~E~~~~-------~~~a~~~Gvd~~~l~~  124 (363)
                      -|+.++...|  ...++-|.|||+.|||||--.+.......|..++.+  |--..++       .-++..+..|..-++-
T Consensus        38 ll~~l~~~~g--~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiR  115 (325)
T PRK09435         38 LLDALLPHTG--NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIR  115 (325)
T ss_pred             HHHHHHHCCC--CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf             9998630179--82599742799986889999999999967985899997899998886101038888761479984884


Q ss_pred             EECCCH------HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             725848------9999999999744897689981433322026554
Q gi|255764460|r  125 SQPDTG------EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE  164 (363)
Q Consensus       125 ~~~~~~------E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie  164 (363)
                      .-|..+      ....+.+ .++..-.+|+|+|--++.=  +.|++
T Consensus       116 s~~srg~lgg~~~~~~~~~-~~~~a~g~d~i~iETvGvG--Q~e~~  158 (325)
T PRK09435        116 PSPSSGTLGGVARKTRETM-LLCEAAGFDVILVETVGVG--QSETA  158 (325)
T ss_pred             ECCCCCCCCCCCHHHHHHH-HHHHHCCCCEEEEEECCCC--HHHHH
T ss_conf             0677888677335499999-9999779998999706777--14889


No 412
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.25  E-value=0.0065  Score=38.00  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=27.1

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             079997068723789999998752008987999
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      .++-+.|+|+|||||||-+++...++.+..++-
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~   34 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIH   34 (261)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             569982699988017899999999972001121


No 413
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=96.25  E-value=0.097  Score=30.56  Aligned_cols=40  Identities=15%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             CCCEEEEEEC-CCCHHHHHHHHHHHHHH-HCCCEEEEEECCC
Q ss_conf             8807999706-87237899999987520-0898799997388
Q gi|255764460|r   66 KGRIVEIYGP-ESSGKTTLALHTIAQSQ-KTGGTCAFVDAEH  105 (363)
Q Consensus        66 ~Gri~ei~G~-~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~  105 (363)
                      .++++.|..+ ++.||||+|+.++.... ..|..|+.||+.-
T Consensus        34 ~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDl   75 (207)
T TIGR03018        34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL   75 (207)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             880999978999998899999999999972498599995357


No 414
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.25  E-value=0.042  Score=32.84  Aligned_cols=88  Identities=24%  Similarity=0.299  Sum_probs=54.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCCHHHHHHH--CCCHHHEEEEECC--------CHH
Q ss_conf             880799970687237899999987520089----87999973885566889981--9883344897258--------489
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALDSIYARKL--GVDLKNLLISQPD--------TGE  131 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~~~~a~~~--Gvd~~~l~~~~~~--------~~E  131 (363)
                      +|.=-.|..||.+|||+|.-+++......-    -.++.||--    |+-...+  .|+ -.++.+.-|        .+|
T Consensus       168 kGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDER----PEEVTdm~r~v~-~eV~aStfD~~~~~H~~vae  242 (416)
T PRK09376        168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER----PEEVTDMQRSVK-GEVVASTFDEPAERHVQVAE  242 (416)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CHHHHHHHHHCC-EEEEEECCCCCHHHHHHHHH
T ss_conf             5850037569987547999999999985699719999990489----347778775046-18999779998789999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             999999999744897689981433322
Q gi|255764460|r  132 QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       132 ~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      -+++.+..+++.|.--+|++||++-|.
T Consensus       243 ~~lerAkRlvE~G~DVvillDSiTRLa  269 (416)
T PRK09376        243 MVIEKAKRLVEHGKDVVILLDSITRLA  269 (416)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             999999999876997899973157888


No 415
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.24  E-value=0.098  Score=30.54  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             CEEEEEE-CCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             0799970-687237899999987520089879999738
Q gi|255764460|r   68 RIVEIYG-PESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        68 ri~ei~G-~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      |++-|+. --|+||||+|.++++...+.|..|+.||..
T Consensus         2 kiIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlD   39 (246)
T TIGR03371         2 KVIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLD   39 (246)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             39999759998549999999999999689978999759


No 416
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.21  E-value=0.023  Score=34.51  Aligned_cols=96  Identities=24%  Similarity=0.349  Sum_probs=49.3

Q ss_pred             CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH--HHHHH--CCCHHHEEEEEC-C-------
Q ss_conf             89726880799970687237899999987520089879999738855668--89981--988334489725-8-------
Q gi|255764460|r   61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKL--GVDLKNLLISQP-D-------  128 (363)
Q Consensus        61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~--~a~~~--Gvd~~~l~~~~~-~-------  128 (363)
                      .|=+|-+  ..++||.|+||||+|++++...-..+..+..-..-...++.  ..+.+  |-.++-+.+.++ |       
T Consensus        41 ~gRl~HA--~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~~i~r~~d~k~~~~~  118 (352)
T PRK09112         41 EGRLHHA--LLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLLHLTRPFDEKTGKFK  118 (352)
T ss_pred             CCCCCCE--EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCHHHHHHH
T ss_conf             4996524--65358998089999999999986699866686556788878778999974899995655343220214543


Q ss_pred             ---CHHHHHHHHHHHH---HCCCCCEEEEECCCCCC
Q ss_conf             ---4899999999997---44897689981433322
Q gi|255764460|r  129 ---TGEQALEITDMLV---RSGAVDIIVIDSVAALT  158 (363)
Q Consensus       129 ---~~E~~~~i~~~li---~~~~~~liViDSi~al~  158 (363)
                         +++++-++.+.+-   .++...++|||++..|.
T Consensus       119 ~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~  154 (352)
T PRK09112        119 TAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMN  154 (352)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
T ss_conf             357779999999984548866880699981878746


No 417
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE).  The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis.  The molecular mechanism of nickel uptake in many bacteria and most archaea is not known.  Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides.  The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.19  E-value=0.007  Score=37.79  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=30.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7268807999706872378999999875200898799997388
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -++.|.++-|.||.+||||||+ ++++...+...-.++++.+.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~   68 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLA-RAILGLLKPTSGSIIFDGKD   68 (228)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECCEE
T ss_conf             9869989999999998699999-99972898788669989964


No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.18  E-value=0.024  Score=34.37  Aligned_cols=95  Identities=19%  Similarity=0.287  Sum_probs=55.8

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCH-------HHHHHHCCC------HHHEEEE-E-CCCHHH
Q ss_conf             799970687237899999987520089879999738-85566-------889981988------3344897-2-584899
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-HALDS-------IYARKLGVD------LKNLLIS-Q-PDTGEQ  132 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E-~~~~~-------~~a~~~Gvd------~~~l~~~-~-~~~~E~  132 (363)
                      |+-|.|..+||||||.-.++....+.|..|..|-.. |.|+.       -+..+-|-+      ..++.+. + ++.-|-
T Consensus         4 ii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H~f~~D~pGkDS~r~r~AGA~~v~v~s~~r~al~~e~~~~~~~   83 (170)
T PRK10751          4 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTLVASQQRWALMTETPEQEEL   83 (170)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf             79999469999999999999999987984999945777888999984109999732664688754321244433666899


Q ss_pred             HHH-HHHHHHHCCCCCEEEEECCC-CCCCHHHHH
Q ss_conf             999-99999744897689981433-322026554
Q gi|255764460|r  133 ALE-ITDMLVRSGAVDIIVIDSVA-ALTPRAEIE  164 (363)
Q Consensus       133 ~~~-i~~~li~~~~~~liViDSi~-al~p~~Eie  164 (363)
                      .++ ++.. +....+|+|++--.- +-.|+-|+-
T Consensus        84 ~l~~l~~~-~~~~~~DlvlvEGfK~~~~pKIev~  116 (170)
T PRK10751         84 DLHYLASR-MDASKLDLILVEGFKHEPIAKIVLF  116 (170)
T ss_pred             CHHHHHHH-CCCCCCCEEEEECCCCCCCCEEEEE
T ss_conf             99999986-1767777899833567898779998


No 419
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.18  E-value=0.013  Score=36.14  Aligned_cols=54  Identities=31%  Similarity=0.562  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCC--CCC-HHHHHHHCCC
Q ss_conf             7268807999706872378999999875200-898799997388--556-6889981988
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH--ALD-SIYARKLGVD  118 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~--~~~-~~~a~~~Gvd  118 (363)
                      -++.|.++-|.||.+||||||. .++....+ ..|.+ +++.+.  .++ .++++.+|.-
T Consensus        24 ~i~~Gei~~liGpNGaGKSTLl-k~i~Gl~~p~sG~I-~i~g~~i~~~~~~~~~~~i~~v   81 (255)
T PRK11231         24 SLPTGKITALIGPNGCGKSTLL-KCFARLLTPQSGTV-FLGDKPISMLSARQLARRLSLL   81 (255)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEE
T ss_conf             9989979999999998199999-99975988886489-9999983629989985118997


No 420
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223   This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=96.17  E-value=0.027  Score=34.05  Aligned_cols=144  Identities=26%  Similarity=0.367  Sum_probs=86.2

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHH---HHH----CCC-----------------HHHEEE--
Q ss_conf             97068723789999998752008987999973885566-889---981----988-----------------334489--
Q gi|255764460|r   72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-IYA---RKL----GVD-----------------LKNLLI--  124 (363)
Q Consensus        72 i~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-~~a---~~~----Gvd-----------------~~~l~~--  124 (363)
                      =.|--|.||||..-.+-....+.|.+++.||+-=.+.- +..   |+.    =||                 +++|.+  
T Consensus         7 TSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiGLRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~~NL~LLp   86 (272)
T TIGR01968         7 TSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLENLYLLP   86 (272)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             81788977358989999999961982899954757034577742310354535543248421100100126752356636


Q ss_pred             -EECC-----CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             -7258-----4899999999997448976899814333220265543455530224788876776777764201781899
Q gi|255764460|r  125 -SQPD-----TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV  198 (363)
Q Consensus       125 -~~~~-----~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i  198 (363)
                       +|..     +.|++-.+++.|...+.+|.|+|||=|      =||..+..+                   +.-..-++|
T Consensus        87 AsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviIDcPA------GIE~GF~nA-------------------v~~Ad~AiV  141 (272)
T TIGR01968        87 ASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIIDCPA------GIESGFRNA-------------------VAPADEAIV  141 (272)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC------CHHHHHHHH-------------------HHHCCEEEE
T ss_conf             5302361346977899999998543793079973787------743568998-------------------752683589


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC--EEEEEEEEEEEEECCCCCC
Q ss_conf             986341145665466512565531111112489750455344577--2476799987740577898
Q gi|255764460|r  199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD--SITGNQTRVKVVKNKMASP  262 (363)
Q Consensus       199 ~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~--~~iG~~v~~kv~Knk~~~P  262 (363)
                      +|            +||.+          |+|=.=|=.|.+...+  +.-|-.++.+++=||+-|.
T Consensus       142 Vt------------tPEvs----------avRDADRvIGlLea~~~i~~~GEE~~~~LivNR~rP~  185 (272)
T TIGR01968       142 VT------------TPEVS----------AVRDADRVIGLLEAKGNIEEKGEEVKIKLIVNRLRPE  185 (272)
T ss_pred             EE------------CCCCC----------CHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHH
T ss_conf             87------------78745----------1002556752421245544577646434778515647


No 421
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=96.16  E-value=0.068  Score=31.54  Aligned_cols=135  Identities=21%  Similarity=0.379  Sum_probs=73.3

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC------HHHHHHHCCC---
Q ss_conf             1477278999723897268807999706872378999999875200898799997388556------6889981988---
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD------SIYARKLGVD---  118 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~------~~~a~~~Gvd---  118 (363)
                      -++|..+|+-+ . ==|++|-+.=+.||+|+|||||.=-++...+-.-|. ++|+.+.--+      |..=+++||=   
T Consensus        11 Y~~~~~aL~~v-~-l~i~kG~F~FLtG~SGAGKttLLKLl~~~~~P~~G~-v~~~G~~~~~l~~~~~P~LRR~iGvvFQD   87 (215)
T TIGR02673        11 YPGGVEALHDV-S-LHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ-VRVAGEDVSRLRGRQLPLLRRRIGVVFQD   87 (215)
T ss_pred             CCCCCHHHCCC-C-EEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCE-EEECCEECCCCCCCCCHHHHCCCCEEEEC
T ss_conf             78985113276-4-475277407887277861789999998526987580-88887404667756431221315437842


Q ss_pred             ---------HHHEEE------EE------------------------C---CCHHHH-HHHHHHHHHCCCCCEEEEECCC
Q ss_conf             ---------334489------72------------------------5---848999-9999999744897689981433
Q gi|255764460|r  119 ---------LKNLLI------SQ------------------------P---DTGEQA-LEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       119 ---------~~~l~~------~~------------------------~---~~~E~~-~~i~~~li~~~~~~liViDSi~  155 (363)
                               .||+-+      ..                        |   .-+||. ..|+..++.+  ..|++.|=  
T Consensus        88 f~LL~~rTv~eNVAl~L~V~G~~~~~I~~rV~~~L~~vGL~~K~~~~P~~LSGGEQQRvaIARAiv~~--P~lLLADE--  163 (215)
T TIGR02673        88 FRLLPDRTVYENVALPLEVRGKKKREIQRRVEAALRLVGLEHKADAFPEQLSGGEQQRVAIARAIVNS--PELLLADE--  163 (215)
T ss_pred             CCCCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCC--CCEEEEEC--
T ss_conf             21101166134112101113888033678999999852863254257210047257888887653048--96798778--


Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             3220265543455530224788876776777764201781899986341
Q gi|255764460|r  156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       156 al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                         |.=.+|.+       ...++|     .|-..+++.++++|+.-|=+
T Consensus       164 ---PTGNLD~~-------~~~~iL-----~ll~~~n~~GtTV~vATHD~  197 (215)
T TIGR02673       164 ---PTGNLDPA-------LSERIL-----DLLKELNKRGTTVIVATHDL  197 (215)
T ss_pred             ---CCCCCCHH-------HHHHHH-----HHHHHHHHCCCEEEEECCCH
T ss_conf             ---89996876-------789999-----99999841898799980787


No 422
>pfam09818 ABC_ATPase Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases.
Probab=96.16  E-value=0.11  Score=30.27  Aligned_cols=122  Identities=29%  Similarity=0.439  Sum_probs=70.7

Q ss_pred             CCCCEEE--EC-CCCCCCCCCCCCCCCCHHHHHHHCC------CCCCCCCEEEEEECCCCHHHHHHHHHHHH----HHHC
Q ss_conf             8873797--03-6655334655014772789997238------97268807999706872378999999875----2008
Q gi|255764460|r   28 GKGAIMQ--LG-SQGSIFEGIEVVSSGSLGLDIALGI------GGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKT   94 (363)
Q Consensus        28 g~~~~~~--lg-~~~~~~~~~~~i~TG~~~lD~~Lg~------GG~p~Gri~ei~G~~~sGKTtlal~~~a~----~qk~   94 (363)
                      +.|++..  -| ++......+++-|--++..-.-|..      =|||.| ||.|.|.--.|||||. +.+..    -..-
T Consensus       196 adGsiLPR~sG~sd~Pl~~aVpF~SP~sL~v~~~lP~~g~v~GMGIp~G-ITlIvGGGyHGKSTLL-~Ale~GVYnHipG  273 (447)
T pfam09818       196 ADGSILPRESGVSDRPLKGAVPFESPESLEVEIELPNGGTVSGMGIPKG-ITLIVGGGYHGKSTLL-EALERGVYDHIPG  273 (447)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCC-EEEEECCCCCCHHHHH-HHHHHCCCCCCCC
T ss_conf             4897576123787676788867679850389998899985564564776-6999789877678899-9998277777889


Q ss_pred             CC--------EEEEEECCCCC-----C-HHHHHHH--CCCHHHEEEEEC-CCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             98--------79999738855-----6-6889981--988334489725-84899999999997448976899814
Q gi|255764460|r   95 GG--------TCAFVDAEHAL-----D-SIYARKL--GVDLKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDS  153 (363)
Q Consensus        95 g~--------~~~~iD~E~~~-----~-~~~a~~~--Gvd~~~l~~~~~-~~~E~~~~i~~~li~~~~~~liViDS  153 (363)
                      +|        .++-|.+|..-     | .-|..+|  |-|+.++..... -+.-||-+|++.| +.| -.+++||=
T Consensus       274 DGRE~VvT~~~avKiRAEDGR~V~~vDIS~FI~~LP~G~dT~~FsT~~ASGSTSqAAnI~Eal-EaG-a~~lLIDE  347 (447)
T pfam09818       274 DGREFVVTDPDAVKIRAEDGRSVHGVDISPFINNLPPGKDTTDFSTEDASGSTSQAANIQEAL-EAG-ASLLLIDE  347 (447)
T ss_pred             CCEEEEEECCCEEEEEECCCCEEECEECHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCC-CCEEEECC
T ss_conf             980799965965888845884462412338784099999877312589871699999999999-748-97899835


No 423
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.14  E-value=0.015  Score=35.66  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=37.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             8807999706872378999999875200-89879999738855668899819
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALDSIYARKLG  116 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~~~~~~~a~~~G  116 (363)
                      .| -|.|.||.++|||+|..-+++++|| .+..+.++|-..+... ....+|
T Consensus       441 vG-HtlI~GpTGsGKTvll~~l~~q~~ry~~~~vf~FDkd~s~~i-~~~a~G  490 (815)
T PRK13873        441 VG-HTLVVGPTGAGKSVLLALMALQFRRYPGSQVFAFDFGGSIRA-AALAMG  490 (815)
T ss_pred             CC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHC
T ss_conf             76-438978899989999999999986448984899978987899-999829


No 424
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.13  E-value=0.0082  Score=37.34  Aligned_cols=45  Identities=33%  Similarity=0.553  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCC
Q ss_conf             726880799970687237899999987520089879999738-8556
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-HALD  108 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E-~~~~  108 (363)
                      -+|.|.++.|.||+++||||| |.++|.+-....--+||+.+ ++-.
T Consensus        21 ~v~~ge~vAi~GpSGaGKSTL-LnLIAGF~~P~~G~i~i~g~d~t~~   66 (231)
T COG3840          21 TVPAGEIVAILGPSGAGKSTL-LNLIAGFETPASGEILINGVDHTAS   66 (231)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHHCCCCCCCEEEECCEECCCC
T ss_conf             606785799977888657889-9998742477874589857214768


No 425
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.13  E-value=0.018  Score=35.22  Aligned_cols=83  Identities=28%  Similarity=0.380  Sum_probs=47.0

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCH
Q ss_conf             72789997238972688079997068723789999998752008987999973885566889981988334489725848
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG  130 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~  130 (363)
                      =...++.+-. -|-|..++ .+||||+.|||||| +++|+-....                          +.+.+-...
T Consensus        37 L~v~i~Aak~-r~e~ldH~-Ll~GPPGlGKTTLA-~iiA~E~~~~--------------------------~~~tsGP~l   87 (328)
T PRK00080         37 LKIFIEAAKK-RGEALDHV-LLYGPPGLGKTTLA-NIIANEMGVN--------------------------IRITSGPAL   87 (328)
T ss_pred             HHHHHHHHHH-CCCCCCCE-EEECCCCCCHHHHH-HHHHHHHCCC--------------------------CEECCCCCC
T ss_conf             9999999996-49998805-76588998899999-9999986888--------------------------156245001


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf             99999999997448976899814333220265
Q gi|255764460|r  131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAE  162 (363)
Q Consensus       131 E~~~~i~~~li~~~~~~liViDSi~al~p~~E  162 (363)
                      |..-+++.-|..-..-|+++||-+-.|.+..|
T Consensus        88 ek~~DL~~iLt~l~~~dvLFIDEIHRl~~~vE  119 (328)
T PRK00080         88 EKAGDLAALLTNLEEGDVLFIDEIHRLSPVVE  119 (328)
T ss_pred             CCHHHHHHHHHHCCCCCEEEEHHHHHCCHHHH
T ss_conf             67478999996088787676506532488899


No 426
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=96.11  E-value=0.015  Score=35.69  Aligned_cols=63  Identities=27%  Similarity=0.438  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCCCCHHHHHHHC
Q ss_conf             772789997238972688079997068723789999998752008----9879999738855668899819
Q gi|255764460|r   50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----GGTCAFVDAEHALDSIYARKLG  116 (363)
Q Consensus        50 TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~----g~~~~~iD~E~~~~~~~a~~~G  116 (363)
                      +|...+..-+-.|-  .| -|.|.||+++|||||..-++++.||-    ++.++|+|--.+... +...+|
T Consensus       412 ~~gtPf~fn~H~~d--~G-Ht~I~G~TGsGKTtll~fL~aq~~ky~~~~~~~~~~fDkd~s~~i-~~~a~G  478 (789)
T PRK13853        412 NGGTPFDYIPHEHD--VG-MTAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVFFDKDRGGEL-LVRATG  478 (789)
T ss_pred             CCCCCEEEECCCCC--CC-CEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH-HHHHHC
T ss_conf             99982586378788--77-448878999988999999999999742235770899958863899-999829


No 427
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.10  E-value=0.0068  Score=37.88  Aligned_cols=54  Identities=33%  Similarity=0.474  Sum_probs=37.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHHC
Q ss_conf             97268807999706872378999999875200898799997388556-68899819
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLG  116 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~G  116 (363)
                      --++.|.++-+-||++|||||+ |.++|..-....--++||.+.-.+ |-+-+.+|
T Consensus        26 l~i~~Gef~tlLGPSGcGKTTl-LR~IAGfe~p~~G~I~l~g~~i~~lpp~kR~ig   80 (352)
T COG3842          26 LDIKKGEFVTLLGPSGCGKTTL-LRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG   80 (352)
T ss_pred             EEECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECCEECCCCCHHHCCCC
T ss_conf             4544886899989988888999-999967778888659999999888994226523


No 428
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.09  E-value=0.011  Score=36.52  Aligned_cols=80  Identities=30%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf             89997238972688079997068723789999998752008987999973885566889981988334489725848999
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA  133 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~  133 (363)
                      .+..+-. -+=+.. -+.+||||+-|||||| +++|+-...+                          +-+.+-...|..
T Consensus        41 fI~AAk~-r~e~lD-HvLl~GPPGlGKTTLA-~IIA~Emgvn--------------------------~k~tsGp~leK~   91 (332)
T COG2255          41 FIKAAKK-RGEALD-HVLLFGPPGLGKTTLA-HIIANELGVN--------------------------LKITSGPALEKP   91 (332)
T ss_pred             HHHHHHH-CCCCCC-EEEEECCCCCCHHHHH-HHHHHHHCCC--------------------------EEECCCCCCCCH
T ss_conf             9999984-498767-4786479987688899-9999985677--------------------------376366201572


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf             99999997448976899814333220265
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVIDSVAALTPRAE  162 (363)
Q Consensus       134 ~~i~~~li~~~~~~liViDSi~al~p~~E  162 (363)
                      -+++..|..-.+-|+++||-+-.|.|..|
T Consensus        92 gDlaaiLt~Le~~DVLFIDEIHrl~~~vE  120 (332)
T COG2255          92 GDLAAILTNLEEGDVLFIDEIHRLSPAVE  120 (332)
T ss_pred             HHHHHHHHCCCCCCEEEEEHHHHCCHHHH
T ss_conf             65999986398677677725531474289


No 429
>cd01127 TrwB Bacterial conjugation protein TrwB,  ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=96.08  E-value=0.013  Score=36.10  Aligned_cols=51  Identities=25%  Similarity=0.346  Sum_probs=41.4

Q ss_pred             CCCCCC-----CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
Q ss_conf             897268-----807999706872378999999875200898799997388556688
Q gi|255764460|r   61 IGGFPK-----GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY  111 (363)
Q Consensus        61 ~GG~p~-----Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~  111 (363)
                      +||+|.     .+=+.|.|.++||||++..+++.++.+.|..++.+|.-+.|...+
T Consensus        31 i~~~p~p~~~e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~f   86 (410)
T cd01127          31 IAGLPFPKDAEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKF   86 (410)
T ss_pred             ECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf             89862786520274799889999889999999999998699099995885499997


No 430
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=96.07  E-value=0.0045  Score=38.99  Aligned_cols=31  Identities=39%  Similarity=0.634  Sum_probs=27.0

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHH-HHHC
Q ss_conf             268807999706872378999999875-2008
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQ-SQKT   94 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~   94 (363)
                      ||+.+++-|.|.+|||||+||+.++.+ =|+.
T Consensus        19 ~Pr~~lVViTG~SGSGKSSLAFDTiYAEGQRR   50 (956)
T TIGR00630        19 IPRDKLVVITGLSGSGKSSLAFDTIYAEGQRR   50 (956)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCH
T ss_conf             38986699974568861545654676614500


No 431
>PRK07667 uridine kinase; Provisional
Probab=96.07  E-value=0.032  Score=33.65  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             07999706872378999999875200898799997388
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      -|+-|.|.++|||||||-.++.+..+.|..++.+....
T Consensus        15 ~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd   52 (190)
T PRK07667         15 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD   52 (190)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99997798978899999999999866598379996662


No 432
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.07  E-value=0.014  Score=35.89  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=37.4

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCHHHHHHH
Q ss_conf             07999706872378999999875200--8987999973885566889981
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQK--TGGTCAFVDAEHALDSIYARKL  115 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk--~g~~~~~iD~E~~~~~~~a~~~  115 (363)
                      +++-|-|.||||||.+++++++..+.  .+..++|+..-+.+-.-+-+.+
T Consensus         2 ~v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l   51 (348)
T pfam09848         2 AVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEAL   51 (348)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             79999777993899999999999864402682089957866999999998


No 433
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.07  E-value=0.009  Score=37.11  Aligned_cols=40  Identities=38%  Similarity=0.561  Sum_probs=29.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26880799970687237899999987520089879999738
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      ++.|-++-|-||++|||||| |.++|...+...-.+.++.+
T Consensus        26 v~~GEfvsilGpSGcGKSTL-LriiAGL~~p~~G~V~~~g~   65 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTL-LRLIAGLEKPTSGEVLLDGR   65 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECCC
T ss_conf             77997999989997889999-99996878777755998882


No 434
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.06  E-value=0.016  Score=35.59  Aligned_cols=84  Identities=23%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHH----C-CCEEEEEECCCCCCHHHHHHHCCCHHHEEEEE-C---CCHHHHHHHHH
Q ss_conf             07999706872378999999875200----8-98799997388556688998198833448972-5---84899999999
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQK----T-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-P---DTGEQALEITD  138 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk----~-g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~-~---~~~E~~~~i~~  138 (363)
                      |.+.|.|++|+||||++-+++.....    . -..+.|+....--.+.   .  ..+..++..+ |   ...++.+   .
T Consensus         1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~---~--~sl~~ll~~~~~~~~~~~~~~~---~   72 (165)
T pfam05729         1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSG---E--ASLADLLFSQWPEPAAPVSEVW---A   72 (165)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCC---C--CCHHHHHHHHCCCCCCCHHHHH---H
T ss_conf             989998279898999999999999869843697289999956707776---6--8999999987677457637899---9


Q ss_pred             HHHHCCCCCEEEEECCCCCCC
Q ss_conf             997448976899814333220
Q gi|255764460|r  139 MLVRSGAVDIIVIDSVAALTP  159 (363)
Q Consensus       139 ~li~~~~~~liViDSi~al~p  159 (363)
                      .+......-++|+|.+.-+.+
T Consensus        73 ~~~~~~~k~L~ilDGlDE~~~   93 (165)
T pfam05729        73 VILELPERVLLILDGLDELAS   93 (165)
T ss_pred             HHHHCCCCEEEEECCHHHHCC
T ss_conf             998397728999648455144


No 435
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.06  E-value=0.089  Score=30.81  Aligned_cols=94  Identities=17%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC-CCCH-H--HHHHHCCCHHHE----EEEECC------C
Q ss_conf             268807999706872378999999875200898799997388-5566-8--899819883344----897258------4
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-ALDS-I--YARKLGVDLKNL----LISQPD------T  129 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~-~~~~-~--~a~~~Gvd~~~l----~~~~~~------~  129 (363)
                      -++| ++.||=-.+=||||-|+.++..+.-.|..|+++-.=- ..+. +  .++..|++..++    .+...+      .
T Consensus        20 ~~kG-li~VytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~~~i~~~~~g~g~~~~~~~~e~d~~~   98 (190)
T PRK05986         20 EEKG-LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEGPGVEFHVMGTGFTWETQDRERDIAA   98 (190)
T ss_pred             CCCC-EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf             4686-799980699871889999999983699889999994488545778874379828998789985778971899999


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             89999999999744897689981433322
Q gi|255764460|r  130 GEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       130 ~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      ++++++.+...+.++..||+|+|=+..+.
T Consensus        99 a~~~~~~a~~~l~~~~~dlvVLDEi~~Al  127 (190)
T PRK05986         99 AREGWEEAKRMLADESYDLVVLDELTYAL  127 (190)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEHHHHHHHH
T ss_conf             99999999999858888889537679998


No 436
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369    GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.04  E-value=0.00077  Score=43.86  Aligned_cols=78  Identities=19%  Similarity=0.353  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             99999999986761887379703665533465---501477278999723897268807999706872378999999875
Q gi|255764460|r   14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGI---EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        14 ~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~---~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      |.+|--.|-|--.||+-.+|+|=+.....-..   -+=+-....|+.+|.   =|-| |+.+.||.||||||.....++.
T Consensus       193 r~~DiRVSt~Pt~fGERvVMRLLDK~~~~l~L~~LGm~~~~l~~~~~li~---rpHG-IiLVTGPTGSGKtTTLYaaL~~  268 (495)
T TIGR02533       193 RDIDIRVSTVPTSFGERVVMRLLDKDAVRLDLEALGMSPELLSSLERLIK---RPHG-IILVTGPTGSGKTTTLYAALSR  268 (495)
T ss_pred             EEEEEEEEECCCCCCCEEEHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHH---CCCC-EEEECCCCCCCHHHHHHHHHHH
T ss_conf             44667885305899710000011204777758864888889999999971---8896-1884177898525889999986


Q ss_pred             HHHCC
Q ss_conf             20089
Q gi|255764460|r   91 SQKTG   95 (363)
Q Consensus        91 ~qk~g   95 (363)
                      .-..+
T Consensus       269 LN~~~  273 (495)
T TIGR02533       269 LNTPE  273 (495)
T ss_pred             HCCCC
T ss_conf             35899


No 437
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.02  E-value=0.016  Score=35.55  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=29.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             999706872378999999875200898799997
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD  102 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD  102 (363)
                      +-++|.-++||||++.+++....+.|..++.+|
T Consensus         2 i~~~~~kGvGKTT~a~~La~~la~~g~~Vl~vD   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             898589977689999999999998899699986


No 438
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.02  E-value=0.03  Score=33.78  Aligned_cols=75  Identities=27%  Similarity=0.399  Sum_probs=47.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHCCC-----------HHHEEEEECC
Q ss_conf             726880799970687237899999987520089879999738--855668-89981988-----------3344897258
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLGVD-----------LKNLLISQPD  128 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~Gvd-----------~~~l~~~~~~  128 (363)
                      -+++|..+-|.|++||||||++.-++.-.....|...+ |..  ..++++ +-+++++-           .+|+.+.+|+
T Consensus       351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr~~i~~V~Qd~~LF~~TI~~NI~~g~~~  429 (567)
T COG1132         351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD  429 (567)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-CCEEHHHCCHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf             75489878885588885789999998615888836989-99977753856788782354664277776699997457889


Q ss_pred             -CHHHHHHHHH
Q ss_conf             -4899999999
Q gi|255764460|r  129 -TGEQALEITD  138 (363)
Q Consensus       129 -~~E~~~~i~~  138 (363)
                       +-|+..+.++
T Consensus       430 at~eei~~a~k  440 (567)
T COG1132         430 ATDEEIEEALK  440 (567)
T ss_pred             CCHHHHHHHHH
T ss_conf             99999999999


No 439
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.01  E-value=0.022  Score=34.67  Aligned_cols=81  Identities=25%  Similarity=0.322  Sum_probs=49.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHH---HHHHHH
Q ss_conf             88079997068723789999998752008987999973885566889981988334489725848999999---999974
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI---TDMLVR  142 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i---~~~li~  142 (363)
                      .|.++=+.|.++|||||+|--+-....++|..+.++|..+ +....-+.+|-       ...|-.|....+   +..|..
T Consensus        22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn-vR~gL~~dLgF-------s~edR~eniRRvaevAkll~d   93 (197)
T COG0529          22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN-VRHGLNRDLGF-------SREDRIENIRRVAEVAKLLAD   93 (197)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHH-HHHCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHH
T ss_conf             9859996468888787999999999997597589855746-76500578897-------867899999999999999987


Q ss_pred             CCCCCEEEEECCCCC
Q ss_conf             489768998143332
Q gi|255764460|r  143 SGAVDIIVIDSVAAL  157 (363)
Q Consensus       143 ~~~~~liViDSi~al  157 (363)
                      .   ++||+=|.-+.
T Consensus        94 a---G~iviva~ISP  105 (197)
T COG0529          94 A---GLIVIVAFISP  105 (197)
T ss_pred             C---CEEEEEEEECC
T ss_conf             8---90899975173


No 440
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.00  E-value=0.0071  Score=37.77  Aligned_cols=32  Identities=25%  Similarity=0.542  Sum_probs=27.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHH-HHHHC
Q ss_conf             726880799970687237899999987-52008
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIA-QSQKT   94 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a-~~qk~   94 (363)
                      -||++++|-|.|+++||||+||+.++. +.|+.
T Consensus       957 ~IPrnkLvViTGvSGSGKSSLAFDTLyAEGQRR  989 (1809)
T PRK00635        957 SLPRNALTAITGPSASGKHSLVFDILYAAGNIA  989 (1809)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             467986699978988868999998899999999


No 441
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=95.99  E-value=0.017  Score=35.31  Aligned_cols=50  Identities=20%  Similarity=0.316  Sum_probs=43.0

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             880799970687237899999987520089879999738855668899819
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG  116 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~G  116 (363)
                      .+.-.-|.|++|+|||.|+-+++.+.-..|+.|..||..+++ ....+.+|
T Consensus       473 tN~N~~I~g~SGsGKSf~~q~l~~~~~~~G~~V~IID~G~SY-~~lc~~~g  522 (864)
T PRK13721        473 TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGY-KSLCENMG  522 (864)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHCC
T ss_conf             870069982899868999999999998579979999699789-99999739


No 442
>PRK06696 uridine kinase; Validated
Probab=95.95  E-value=0.015  Score=35.77  Aligned_cols=39  Identities=28%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             799970687237899999987520089879999738855
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL  107 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~  107 (363)
                      ++-|.|+++|||||||-.++....+.|..|+.+...+-+
T Consensus        28 ~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~   66 (227)
T PRK06696         28 RVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFH   66 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             999778998787999999999997469948997154434


No 443
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.95  E-value=0.011  Score=36.58  Aligned_cols=40  Identities=28%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf             72688079997068723789999998752008-9879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E  104 (363)
                      -+|.|.++-|.||.|||||||. .+++...+. .|.+ ++|-+
T Consensus        23 ~i~~G~i~~l~G~NGaGKSTLl-kli~Gl~~p~~G~I-~~~~~   63 (200)
T PRK13540         23 HLPAGGLLHLKGSNGAGKTTLL-KLIAGLLNPEKGEI-LFERQ   63 (200)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEE-EECCE
T ss_conf             9879979999889998799999-99977858898569-99998


No 444
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=95.94  E-value=0.011  Score=36.65  Aligned_cols=99  Identities=26%  Similarity=0.367  Sum_probs=62.3

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC---------CCCHHHHHHHCCCHHHE--------EE
Q ss_conf             97268807999706872378999999875200898799997388---------55668899819883344--------89
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH---------ALDSIYARKLGVDLKNL--------LI  124 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~---------~~~~~~a~~~Gvd~~~l--------~~  124 (363)
                      -|=-.||-+.+.|||+||||.||+.++.+.-..=.+|...-+|-         .+...+-+++||-....        .=
T Consensus        45 ~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKTE~L~qafRrsIGvrIkE~~eVyEGEV~e  124 (395)
T pfam06068        45 EGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEALTQAFRKAIGVRIKEEKEVYEGEVVE  124 (395)
T ss_pred             HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEEE
T ss_conf             27757738998779998889999999997487997345001112125654889999999887556867888999999999


Q ss_pred             EEC---C--------------------CHHHH----HHHHHHHHHCCC--CCEEEEECCCCCCCH
Q ss_conf             725---8--------------------48999----999999974489--768998143332202
Q gi|255764460|r  125 SQP---D--------------------TGEQA----LEITDMLVRSGA--VDIIVIDSVAALTPR  160 (363)
Q Consensus       125 ~~~---~--------------------~~E~~----~~i~~~li~~~~--~~liViDSi~al~p~  160 (363)
                      .++   +                    -.|..    -.++++|.+.+-  -|+|-||+-++-+.+
T Consensus       125 i~~~~~~~p~~~~~k~~~~~~itLkT~~~~~~l~l~~~i~e~l~kekV~~GDVI~Id~~sG~V~k  189 (395)
T pfam06068       125 LEIEEAENPLSGYGKTIKHGKITLKTTKMEKTLKLGPKIYEQLQKEKVQAGDVIYIDKNTGKVKK  189 (395)
T ss_pred             EEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHCCCCCCCEEEEECCCCEEEE
T ss_conf             99741468889876540379999997588178725889999999749866878999858715999


No 445
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.94  E-value=0.036  Score=33.29  Aligned_cols=73  Identities=27%  Similarity=0.354  Sum_probs=44.9

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHCCC-----------HHHEEEEEC
Q ss_conf             9726880799970687237899999987520089879999738--855668-89981988-----------334489725
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLGVD-----------LKNLLISQP  127 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~Gvd-----------~~~l~~~~~  127 (363)
                      ==+|+|..+-|.|++|||||||+--++.-.....|. ++||..  ..++++ +-+++|+=           -+|+.+..|
T Consensus       356 l~i~~Ge~vaiVG~SGsGKSTL~~LL~gly~p~~G~-I~idg~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNI~~g~~  434 (585)
T PRK13657        356 FEAKPGQTVAIVGPTGAGKSTLINLLHRVFDPQSGR-IRIDGTDIRTVTRASLRRNIGVVFQEAGLFNRSIEDNLRVGRP  434 (585)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC-EEECCEECHHCCHHHHHHHCCEECCCCCCCCHHHHHHHHCCCC
T ss_conf             897599889998898986999999986015788796-7589896101689999852522166763547659988752799


Q ss_pred             C-CHHHHHH
Q ss_conf             8-4899999
Q gi|255764460|r  128 D-TGEQALE  135 (363)
Q Consensus       128 ~-~~E~~~~  135 (363)
                      + +-|+..+
T Consensus       435 ~~sd~ei~~  443 (585)
T PRK13657        435 DATDEEMRA  443 (585)
T ss_pred             CCCHHHHHH
T ss_conf             998688999


No 446
>KOG3062 consensus
Probab=95.94  E-value=0.03  Score=33.75  Aligned_cols=78  Identities=26%  Similarity=0.377  Sum_probs=45.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHH--HHHHHHHC-C
Q ss_conf             79997068723789999998752008987-99997388556688998198833448972584899999--99999744-8
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGT-CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE--ITDMLVRS-G  144 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~-~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~--i~~~li~~-~  144 (363)
                      ++.|.|.|.|||||.|-++....+..|.+ +++|-.+.+        +|++-... |.. .-.|.++.  +....-|+ .
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des--------lg~~~ns~-y~~-s~~EK~lRg~L~S~v~R~Ls   72 (281)
T KOG3062           3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES--------LGIEKNSN-YGD-SQAEKALRGKLRSAVDRSLS   72 (281)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH--------CCCCCCCC-CCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf             699937888882067999999998625551499954132--------17887422-244-57788889989999985335


Q ss_pred             CCCEEEEECCCC
Q ss_conf             976899814333
Q gi|255764460|r  145 AVDIIVIDSVAA  156 (363)
Q Consensus       145 ~~~liViDSi~a  156 (363)
                      .-++||+||+--
T Consensus        73 k~~iVI~DslNy   84 (281)
T KOG3062          73 KGDIVIVDSLNY   84 (281)
T ss_pred             CCCEEEEECCCC
T ss_conf             686899814441


No 447
>KOG0055 consensus
Probab=95.93  E-value=0.036  Score=33.33  Aligned_cols=65  Identities=28%  Similarity=0.501  Sum_probs=47.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHH-HHHCCC-----------HHHEEEEECC
Q ss_conf             7268807999706872378999999875200898799997388--5566889-981988-----------3344897258
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSIYA-RKLGVD-----------LKNLLISQPD  128 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~~~a-~~~Gvd-----------~~~l~~~~~~  128 (363)
                      =+|.|..+.+.|+++|||||+- +++...-....--++||.++  .++..|. +++|+=           .+|+.|=.||
T Consensus       375 ~i~~G~~valVG~SGsGKST~i-~LL~RfydP~~G~V~iDG~di~~~~~~~Lr~~IglV~QePvLF~~tI~eNI~~G~~d  453 (1228)
T KOG0055         375 KIPSGQTVALVGPSGSGKSTLI-QLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD  453 (1228)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHHHCCCCCCEEEECCCCCHHCCHHHHHHHCCEEEECHHHHHCCHHHHHHCCCCC
T ss_conf             8279988999889998799999-999972688786599768560122659998646826601035405099998568976


No 448
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.92  E-value=0.075  Score=31.27  Aligned_cols=99  Identities=22%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH--CC--------CEEEEEECCCCCCHHHHHHH--CCCHHH
Q ss_conf             8999723897268807999706872378999999875200--89--------87999973885566889981--988334
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TG--------GTCAFVDAEHALDSIYARKL--GVDLKN  121 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk--~g--------~~~~~iD~E~~~~~~~a~~~--Gvd~~~  121 (363)
                      .|-.++..|-+|-  -..+.||+|+||+|+|+.++.....  ..        ..++.+|.+|.+    ...+  |-.+|-
T Consensus        28 ~L~~a~~~grl~H--A~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~----~r~i~~~~hpdl  101 (363)
T PRK07471         28 ALLDAYRSGRLHH--AWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPV----ARRIAAGAHGGL  101 (363)
T ss_pred             HHHHHHHCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCH----HHHHHCCCCCCE
T ss_conf             9999998599764--5876799981889999999999857999777776787053125877728----999952699984


Q ss_pred             EEEEEC-C----------CHHHHHHHHHHHHH---CCCCCEEEEECCCCCC
Q ss_conf             489725-8----------48999999999974---4897689981433322
Q gi|255764460|r  122 LLISQP-D----------TGEQALEITDMLVR---SGAVDIIVIDSVAALT  158 (363)
Q Consensus       122 l~~~~~-~----------~~E~~~~i~~~li~---~~~~~liViDSi~al~  158 (363)
                      +.+.++ +          +++|+-++...+-.   .+...++|||+...|.
T Consensus       102 ~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn  152 (363)
T PRK07471        102 LTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMN  152 (363)
T ss_pred             EEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHC
T ss_conf             667620011333212445399999999997248524896699986878738


No 449
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90  E-value=0.0094  Score=36.97  Aligned_cols=52  Identities=33%  Similarity=0.604  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH--HCCCE----EEEEECCCCCCHHHHHHHCC
Q ss_conf             726880799970687237899999987520--08987----99997388556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ--KTGGT----CAFVDAEHALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q--k~g~~----~~~iD~E~~~~~~~a~~~Gv  117 (363)
                      -|+.|.++-+.||++|||||+ |.++|..-  ..|.+    -+|.|+++ + +...+++|.
T Consensus        24 ~i~~Ge~vaLlGpSGaGKsTl-LRiIAGLe~p~~G~I~~~~~~l~D~~~-~-~~~~R~VGf   81 (345)
T COG1118          24 DIKSGELVALLGPSGAGKSTL-LRIIAGLETPDAGRIRLNGRVLFDVSN-L-AVRDRKVGF   81 (345)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECCEECCCHHC-C-CHHHCCEEE
T ss_conf             506886899977898767889-999857577887569999986100000-3-234402148


No 450
>PRK06761 hypothetical protein; Provisional
Probab=95.89  E-value=0.069  Score=31.49  Aligned_cols=130  Identities=17%  Similarity=0.149  Sum_probs=71.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----CCHHHHHHHC-CCHHHEEEEECCCHHHHHHHHHHHH
Q ss_conf             8079997068723789999998752008987999973885----5668899819-8833448972584899999999997
Q gi|255764460|r   67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA----LDSIYARKLG-VDLKNLLISQPDTGEQALEITDMLV  141 (363)
Q Consensus        67 Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~----~~~~~a~~~G-vd~~~l~~~~~~~~E~~~~i~~~li  141 (363)
                      ++++-|=|-|||||||++-.+....+..|.-|-. =.|+.    +|-.|..=+- -..++++-.-|+..|+...   ..+
T Consensus         2 ~kLIiIEGlPGsGKSTta~~l~d~L~~~g~~v~~-~~Egd~~hP~D~~~~A~~t~~e~~~ll~~~p~~~e~l~k---~~~   77 (281)
T PRK06761          2 TKLIIIEGLPGFGKSTTAHLLNDKLSQLKIEVEL-FVEGDLNHPADYDWVACFTKFEYDRLLSNYPDFKEVLLK---NIL   77 (281)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHH---HHH
T ss_conf             6179996689998014999999999866985389-950789996111222104788899998857318899998---766


Q ss_pred             HCCCCCEEEE------------ECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             4489768998------------14333220265543455530224788876776777764201781899986341
Q gi|255764460|r  142 RSGAVDIIVI------------DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR  204 (363)
Q Consensus       142 ~~~~~~liVi------------DSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r  204 (363)
                      +.+..-++=.            ||+-.-..+.++    -+......+.++..-+|.-.......++..||=-++-
T Consensus        78 ~~~~y~l~~Y~k~~~~~~~~~~d~L~~~~~k~di----Y~lp~~~~~~~~~~rWr~Fa~~a~~~~~v~IFec~l~  148 (281)
T PRK06761         78 KKGDYYLLPYRKIKNEFGDQFSDELFNDISRNEI----YEVPFDKFVELIADKWKDFAEIALEDNKVYIFECCLI  148 (281)
T ss_pred             HCCCEEEEEEEECHHCCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf             3177044321100010477667377766425256----4089999999999999999984067886499973543


No 451
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.88  E-value=0.14  Score=29.47  Aligned_cols=27  Identities=37%  Similarity=0.610  Sum_probs=22.1

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             268807999706872378999999875
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQ   90 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~   90 (363)
                      +..|.++-|.||.++|||||.-.+..-
T Consensus        27 i~~GE~~~iiGpNGaGKSTLlk~i~Gl   53 (262)
T PRK09984         27 IHHGEMVALLGPSGSGKSTLLRHLSGL   53 (262)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             879989999989996099999999756


No 452
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=95.87  E-value=0.036  Score=33.30  Aligned_cols=29  Identities=28%  Similarity=0.400  Sum_probs=23.7

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             79997068723789999998752008987
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGT   97 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~   97 (363)
                      |+-|.|+++|||||||-.+.....+.|-.
T Consensus         1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~   29 (196)
T pfam00485         1 IIGVAGSSGAGKTTVARTFVSIFGREGVP   29 (196)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             98998998571999999999996605877


No 453
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.86  E-value=0.056  Score=32.10  Aligned_cols=144  Identities=24%  Similarity=0.340  Sum_probs=77.2

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-------C-EEEEEECCCCCCHHHHH---------HHCCCHHHE----
Q ss_conf             26880799970687237899999987520089-------8-79999738855668899---------819883344----
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------G-TCAFVDAEHALDSIYAR---------KLGVDLKNL----  122 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-------~-~~~~iD~E~~~~~~~a~---------~~Gvd~~~l----  122 (363)
                      +..|-.+-|.|+.++|||||. .+++..-+..       | .+..|+--.+|+|+.-.         -+|+--..+    
T Consensus        50 i~~Ge~vGiiG~NGaGKSTLl-kliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~lG~~~~ei~~~~  128 (249)
T COG1134          50 IYKGERVGIIGHNGAGKSTLL-KLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKV  128 (249)
T ss_pred             EECCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEECCEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             607989989878998589999-9995871798825998146705644156778542058789999998466699999888


Q ss_pred             -----------EEEEC----CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             -----------89725----848999999999974489768998143332202655434555302247888767767777
Q gi|255764460|r  123 -----------LISQP----DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT  187 (363)
Q Consensus       123 -----------~~~~~----~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~  187 (363)
                                 ++-+|    .++..+ .++-.+...-..|++++|=+-|.                ..+..+.+...++.
T Consensus       129 ~eIieFaELG~fi~~PvktYSSGM~a-RLaFsia~~~~pdILllDEvlav----------------GD~~F~~K~~~rl~  191 (249)
T COG1134         129 DEIIEFAELGDFIDQPVKTYSSGMYA-RLAFSVATHVEPDILLLDEVLAV----------------GDAAFQEKCLERLN  191 (249)
T ss_pred             HHHHHHHHHHHHHHCCHHHCCHHHHH-HHHHHHHHHCCCCEEEEEHHHHC----------------CCHHHHHHHHHHHH
T ss_conf             99999987788761744112588999-98887533137878998613440----------------77999999999999


Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             6420178189998634114566546651256553111111248975045534457
Q gi|255764460|r  188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK  242 (363)
Q Consensus       188 ~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~  242 (363)
                      ....+. .++|++.|-.                .+++=+|.--+|+.+.+....+
T Consensus       192 e~~~~~-~tiv~VSHd~----------------~~I~~~Cd~~i~l~~G~i~~~G  229 (249)
T COG1134         192 ELVEKN-KTIVLVSHDL----------------GAIKQYCDRAIWLEHGQIRMEG  229 (249)
T ss_pred             HHHHCC-CEEEEEECCH----------------HHHHHHCCEEEEEECCEEEECC
T ss_conf             999759-8799997887----------------9999856705998587799759


No 454
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892    Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.85  E-value=0.007  Score=37.80  Aligned_cols=51  Identities=31%  Similarity=0.423  Sum_probs=35.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEE
Q ss_conf             7999706872378999999875200898799997388556688998198833448972
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ  126 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~  126 (363)
                      ++-|.|||||||||.|-.++.+ -  +..  ||.+ +.+ .++|+..|+|+.+.-++.
T Consensus         2 ~I~ISGpPGSGktTvA~~lA~~-L--sl~--~iSa-G~i-RelA~~~Gldl~E~~~ae   52 (173)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEK-L--SLK--LISA-GDI-RELAEKMGLDLAESKYAE   52 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH-C--CCC--EECC-CHH-HHHHHHCCCCHHHHHHHC
T ss_conf             7887358968647899999986-3--983--1202-007-889864298877734430


No 455
>KOG1969 consensus
Probab=95.85  E-value=0.056  Score=32.10  Aligned_cols=60  Identities=30%  Similarity=0.382  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH
Q ss_conf             147727899972389726880799970687237899999987520089879999738855668
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI  110 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~  110 (363)
                      -++-...||..++--+-|.-+|..+.||+|-|||||| |++|.  ..|+.|+=|.+-..=.+.
T Consensus       307 ~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA-HViAk--qaGYsVvEINASDeRt~~  366 (877)
T KOG1969         307 GPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA-HVIAK--QAGYSVVEINASDERTAP  366 (877)
T ss_pred             CCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH-HHHHH--HCCCEEEEECCCCCCCHH
T ss_conf             6643455632468667984006875368878724799-99998--628548873255543478


No 456
>CHL00181 cbbX CbbX; Provisional
Probab=95.84  E-value=0.028  Score=34.01  Aligned_cols=74  Identities=20%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC---CCEEEEEECCCCHHHHHHHHH
Q ss_conf             9999999999986761-887379703665533465501477278999723897268---807999706872378999999
Q gi|255764460|r   12 KSKALEAALSQIQRVY-GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK---GRIVEIYGPESSGKTTLALHT   87 (363)
Q Consensus        12 k~~~l~~~~~~i~k~~-g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~---Gri~ei~G~~~sGKTtlal~~   87 (363)
                      ..+.|+.+|.++++++ |=+         .+.+.+..+-. ...++..--.-|+|.   +.-..+.||||+||||.|-.+
T Consensus        10 ~~~~lee~L~eLd~eliGL~---------~VK~~v~~l~~-~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~   79 (287)
T CHL00181         10 NKTQIQEVLDELDEELIGLV---------PVKTRIREIAA-LLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKM   79 (287)
T ss_pred             HHCCHHHHHHHHHHHCCCHH---------HHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             45349999999988646969---------99999999999-999999999879998887653888789986799999999


Q ss_pred             HHHHHHCC
Q ss_conf             87520089
Q gi|255764460|r   88 IAQSQKTG   95 (363)
Q Consensus        88 ~a~~qk~g   95 (363)
                      ..-....|
T Consensus        80 a~il~~lG   87 (287)
T CHL00181         80 ADILYRLG   87 (287)
T ss_pred             HHHHHHCC
T ss_conf             99999869


No 457
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.82  E-value=0.012  Score=36.38  Aligned_cols=54  Identities=28%  Similarity=0.465  Sum_probs=35.9

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE------EEEEECCCCCC
Q ss_conf             72789997238972688079997068723789999998752008987------99997388556
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT------CAFVDAEHALD  108 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~------~~~iD~E~~~~  108 (363)
                      |-.+||..+-   +|-.-+|-|||.+||||||+- +++|.-.+...-      .+|.|++..+.
T Consensus        10 G~f~Ld~~~~---~pg~GvtAlFG~SGsGKTtli-~~iaGL~rp~~G~i~l~G~~L~ds~k~i~   69 (361)
T TIGR02142        10 GDFELDVDLT---LPGQGVTALFGRSGSGKTTLI-RLIAGLTRPDEGEIVLNGEVLFDSRKGIF   69 (361)
T ss_pred             CCEEEEEEEE---CCCCEEEEEECCCCCHHHHHH-HHHHHCCCCCCCEEEECCEEEECCCCCCC
T ss_conf             5547777653---287406871258997078999-99873167566879988746205677667


No 458
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine.  MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli  branched-chain amino acid transporter.  MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs.  The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.81  E-value=0.026  Score=34.19  Aligned_cols=54  Identities=28%  Similarity=0.426  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHHCC
Q ss_conf             7268807999706872378999999875200898799997388--556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~~~a~~~Gv  117 (363)
                      -++.|.++-|.||.++|||||+ .++....+...--++++.+.  ..+|..+.+.|+
T Consensus        22 ~i~~Gei~gliG~nGaGKSTL~-~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi   77 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTLF-NLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI   77 (236)
T ss_pred             EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCC
T ss_conf             9889989999989997399999-9996798788318999999668899999997597


No 459
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif.  It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=95.79  E-value=0.13  Score=29.76  Aligned_cols=119  Identities=23%  Similarity=0.213  Sum_probs=60.4

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHH----CCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHH---
Q ss_conf             7999706872378999999875200----898799997388556688998198833448972584899999999997---
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQK----TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV---  141 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk----~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li---  141 (363)
                      -..|.|.++||||++...++.+...    ..-..+.||..+. +....+.+    ..+...-.+..|++.+.++.|.   
T Consensus        40 H~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD~K~~-~~~~~~~~----~h~~~~~~~d~e~~~~~l~~l~~em  114 (202)
T pfam01580        40 HLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGG-ELAALEDL----PHLLSAVATDPEDALSALRALVAEM  114 (202)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHC----CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             689965899980099999999998737962069999748961-26767635----6544337689999999999999999


Q ss_pred             -------HCC--------------------------CCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             -------448--------------------------97689981433322026554345553022478887677677776
Q gi|255764460|r  142 -------RSG--------------------------AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS  188 (363)
Q Consensus       142 -------~~~--------------------------~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~  188 (363)
                             ++.                          ..-++|||-.++|.....  ++       ...+.+ ..+.+|..
T Consensus       115 ~rR~~ll~~~g~~~i~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~~~l~~~~~--~~-------~~~~~~-~~l~~iar  184 (202)
T pfam01580       115 ERRYALLKQLGVRSIEEYNGEIAEDILGGAGWLEELPPIVVIVDERAELMLAAP--KD-------SEMRVE-GALARLAR  184 (202)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCC--HH-------HHHHHH-HHHHHHHH
T ss_conf             999999998388768999998664321245543347818986445999986555--04-------689999-99999999


Q ss_pred             HHCCCCCEEEEEEC
Q ss_conf             42017818999863
Q gi|255764460|r  189 SISRSKCILVFINQ  202 (363)
Q Consensus       189 ~~~k~~~~~i~iNQ  202 (363)
                      .-...++-+|+.-|
T Consensus       185 ~GRa~GihlilatQ  198 (202)
T pfam01580       185 MGRAAGIHLLLATQ  198 (202)
T ss_pred             HHHHCCEEEEEEEC
T ss_conf             88733829999818


No 460
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.79  E-value=0.013  Score=36.16  Aligned_cols=41  Identities=29%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             268807999706872378999999875200898799997388
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH  105 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~  105 (363)
                      +..|.++-+-||++|||||+ |.++|..-+...--++||-+.
T Consensus        26 i~~Gef~vllGPSGcGKSTl-Lr~IAGLe~p~~G~I~i~g~~   66 (338)
T COG3839          26 IEDGEFVVLLGPSGCGKSTL-LRMIAGLEEPTSGEILIDGRD   66 (338)
T ss_pred             ECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEECCEE
T ss_conf             74797999989998888999-999968877887159999999


No 461
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.78  E-value=0.12  Score=30.00  Aligned_cols=160  Identities=20%  Similarity=0.303  Sum_probs=89.0

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH--------HCCCEEEEEECCCCCCH-----HHH
Q ss_conf             50147727899972389726880799970687237899999987520--------08987999973885566-----889
Q gi|255764460|r   46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--------KTGGTCAFVDAEHALDS-----IYA  112 (363)
Q Consensus        46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q--------k~g~~~~~iD~E~~~~~-----~~a  112 (363)
                      +.+-||..++|.++.+|   +|.=-.|.|.-.+|||++|+.++-|-.        +.+-+|+|+---..-+.     +.+
T Consensus       171 ePl~TGikaIDamIPIG---RGQRELIIGDRQTGKTaIAiDTIINQk~~n~~~~k~~~V~CIYVAIGQK~StVA~iv~~L  247 (574)
T PTZ00185        171 YNLLTGFKAVDTMIPIG---RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLL  247 (574)
T ss_pred             CHHHHHHHHHHHCCCCC---CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf             45565567886436667---885203555776556899999998376434465778966999998541289999999999


Q ss_pred             HHHCCCHHH-EEEEEC--CCH-HHH------HHHHHHHHHCCCCCEEEEECCCCCCC-HHHH----HHHHH-HHCCC---
Q ss_conf             981988334-489725--848-999------99999997448976899814333220-2655----43455-53022---
Q gi|255764460|r  113 RKLGVDLKN-LLISQP--DTG-EQA------LEITDMLVRSGAVDIIVIDSVAALTP-RAEI----EGDMG-ESLPG---  173 (363)
Q Consensus       113 ~~~Gvd~~~-l~~~~~--~~~-E~~------~~i~~~li~~~~~~liViDSi~al~p-~~Ei----e~~~~-d~~~g---  173 (363)
                      +..|. ++. ++++-+  +.. .|.      ..+.|.+...|.--|||+|-++-..- -.|+    ...-| ++..|   
T Consensus       248 ~e~gA-m~yTiIVaAtAsd~a~lQYLAPYaG~AmaEyFm~~G~dvLIVyDDLSKhA~AYRqmSLLLRRPPGREAYPGDVF  326 (574)
T PTZ00185        248 RSYGA-LRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVF  326 (574)
T ss_pred             HHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf             97697-20308999247775144232110125777898856984799965807889999998720689999879887661


Q ss_pred             -HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf             -478887677677776420178189998634114566
Q gi|255764460|r  174 -MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV  209 (363)
Q Consensus       174 -~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~  209 (363)
                       +++|++-++.+.-...-+.+-+++=+|-.+-.++.+
T Consensus       327 YlHSRLLERAaKls~~~GgGSiTALPIIETqaGDvSA  363 (574)
T PTZ00185        327 YLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTA  363 (574)
T ss_pred             EECHHHHHHHHHCCCCCCCEEEEECEEEEECCCCEEE
T ss_conf             1101788888752445698004642069960785510


No 462
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.77  E-value=0.027  Score=34.08  Aligned_cols=54  Identities=33%  Similarity=0.493  Sum_probs=37.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECC--CCCCHHHHHHHCCC
Q ss_conf             72688079997068723789999998752008-9879999738--85566889981988
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAE--HALDSIYARKLGVD  118 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E--~~~~~~~a~~~Gvd  118 (363)
                      -++.|.|+-+.||.++||||+- .++...-+. .|.+.| +.+  ..+.|.-..++|+-
T Consensus        26 ~v~~Gei~~LIGPNGAGKTTlf-NlitG~~~P~~G~v~~-~G~~it~l~p~~iar~Gi~   82 (250)
T COG0411          26 EVRPGEIVGLIGPNGAGKTTLF-NLITGFYKPSSGTVIF-RGRDITGLPPHRIARLGIA   82 (250)
T ss_pred             EECCCEEEEEECCCCCCCEEEE-EEECCCCCCCCCEEEE-CCCCCCCCCHHHHHHCCCE
T ss_conf             8738728999889988824566-5323640588736998-8803677888899862504


No 463
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.77  E-value=0.025  Score=34.27  Aligned_cols=50  Identities=32%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHCCCHH
Q ss_conf             799970687237899999987520089-8799997388556688998198833
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKLGVDLK  120 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g-~~~~~iD~E~~~~~~~a~~~Gvd~~  120 (363)
                      .+-|.|--+|||||++..+++..-+.+ ..++-||+..  |+...++|||+..
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp--d~nL~~~LGve~~   52 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP--DSNLPEALGVEEP   52 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHCCCCCC
T ss_conf             69996599765899999999999864895499994899--9990776299998


No 464
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=95.76  E-value=0.012  Score=36.23  Aligned_cols=75  Identities=29%  Similarity=0.439  Sum_probs=45.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCH-HHHHHHCCC-----------HHHEEEEECC
Q ss_conf             7268807999706872378999999875200898799997388--5566-889981988-----------3344897258
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDS-IYARKLGVD-----------LKNLLISQPD  128 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~-~~a~~~Gvd-----------~~~l~~~~~~  128 (363)
                      =+|.|+-+.|.|++|||||||+.-+..-.--.+|.+. +|...  +++. +..+.+++=           .+||.+.+||
T Consensus       383 ~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vt-l~G~~~~~~~~~evrr~v~~~aQ~aHlF~ttvr~NLrlarpd  461 (566)
T TIGR02868       383 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT-LDGVPVSSLSEDEVRRRVSVFAQDAHLFDTTVRENLRLARPD  461 (566)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEE-ECCCCHHHCCCCHHEHHEEECCCCCCCCCCCHHHHHHHCCCC
T ss_conf             1138860898668876578999999840289999178-777324325731100000312788621105478788731888


Q ss_pred             C-----HHHHHHHHH
Q ss_conf             4-----899999999
Q gi|255764460|r  129 T-----GEQALEITD  138 (363)
Q Consensus       129 ~-----~E~~~~i~~  138 (363)
                      -     -||+.+.++
T Consensus       462 aaaGDtdeE~~~aL~  476 (566)
T TIGR02868       462 AAAGDTDEELLAALE  476 (566)
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             899888899999999


No 465
>KOG2373 consensus
Probab=95.75  E-value=0.04  Score=33.02  Aligned_cols=142  Identities=17%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC---------------------
Q ss_conf             77278999723897268807999706872378999999875200898799997388556---------------------
Q gi|255764460|r   50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD---------------------  108 (363)
Q Consensus        50 TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~---------------------  108 (363)
                      .-.+-|+..|  +|..+|-+|-+.||.+||||||.-.-.-...-+|--.+|=..|-.=.                     
T Consensus       258 kRFpvLNk~L--kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~  335 (514)
T KOG2373         258 KRFPVLNKYL--KGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNS  335 (514)
T ss_pred             HHHHHHHHHH--CCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             0206889985--36787726998568889823675676589986322440650043608999999999716723755545


Q ss_pred             -HHHHHHHCCCHHHE-EEEECCCHHHH----HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             -68899819883344-89725848999----9999999744897689981433322026554345553022478887677
Q gi|255764460|r  109 -SIYARKLGVDLKNL-LISQPDTGEQA----LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA  182 (363)
Q Consensus       109 -~~~a~~~Gvd~~~l-~~~~~~~~E~~----~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~  182 (363)
                       ..||.++-    ++ +|.-.-+++|.    ++.+.-.+--..+.-||||-+--|.-...+..   | ....|-++.. +
T Consensus       336 y~HWadrFE----rlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~---D-rf~~QD~iig-~  406 (514)
T KOG2373         336 YKHWADRFE----RLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMAL---D-RFHLQDRIIG-Y  406 (514)
T ss_pred             HHHHHHHHH----CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC---C-HHHHHHHHHH-H
T ss_conf             667899875----26367610246106888999998999887546444555788746430100---0-4566778999-9


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             67777642017818999863411
Q gi|255764460|r  183 LRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       183 lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      +|+.   +.++||-+-.+=|-|-
T Consensus       407 fR~f---AT~nn~HvTlVvHPRK  426 (514)
T KOG2373         407 FRQF---ATQNNIHVTLVVHPRK  426 (514)
T ss_pred             HHHH---HHCCCEEEEEEECCCC
T ss_conf             9987---5426606999965665


No 466
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.75  E-value=0.027  Score=34.13  Aligned_cols=66  Identities=15%  Similarity=0.287  Sum_probs=36.4

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH------HHHHHCCCHHHEEEEE-----CCCHHHH
Q ss_conf             6880799970687237899999987520089879999738855668------8998198833448972-----5848999
Q gi|255764460|r   65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI------YARKLGVDLKNLLISQ-----PDTGEQA  133 (363)
Q Consensus        65 p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~------~a~~~Gvd~~~l~~~~-----~~~~E~~  133 (363)
                      |.-+.+-+ -.|  |--.+.-.++..+-..+.-++.||+...+-+.      .+.-+|+.  +++++-     .+.-|+.
T Consensus        85 ~~r~~~i~-DaP--GH~~y~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~--~iivaVNKMDlV~y~~~~  159 (613)
T PRK05506         85 PKRKFIVA-DTP--GHEQYTRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIR--HIVLAVNKMDLVDYDQEV  159 (613)
T ss_pred             CCEEEEEE-CCC--CHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCHHHH
T ss_conf             87059994-289--6798998999878653879999988879515518999999872987--599998520124781999


Q ss_pred             HH
Q ss_conf             99
Q gi|255764460|r  134 LE  135 (363)
Q Consensus       134 ~~  135 (363)
                      |+
T Consensus       160 f~  161 (613)
T PRK05506        160 FD  161 (613)
T ss_pred             HH
T ss_conf             99


No 467
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.74  E-value=0.017  Score=35.41  Aligned_cols=54  Identities=31%  Similarity=0.482  Sum_probs=41.6

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC---CCCCHHHHHHHCC
Q ss_conf             726880799970687237899999987520089879999738---8556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE---HALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E---~~~~~~~a~~~Gv  117 (363)
                      -+|.|.||-+.||.+.||||| |.+++...+.+.-.+|||.-   .+-+.+.|+.+.+
T Consensus        23 ~i~~g~iTs~IGPNGAGKSTL-LS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604          23 DIPKGGITSIIGPNGAGKSTL-LSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             EECCCCEEEEECCCCCCHHHH-HHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHH
T ss_conf             415886368888998648889-999998526678638981166256876999999889


No 468
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.72  E-value=0.14  Score=29.56  Aligned_cols=84  Identities=29%  Similarity=0.375  Sum_probs=53.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHH---HEEE---EECC-----CHHHH-H-HH
Q ss_conf             999706872378999999875200898799997388556688998198833---4489---7258-----48999-9-99
Q gi|255764460|r   70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK---NLLI---SQPD-----TGEQA-L-EI  136 (363)
Q Consensus        70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~---~l~~---~~~~-----~~E~~-~-~i  136 (363)
                      +.+.|--++||||++..++....+.|..++.||+.-.   +..+++++...   .++.   .++.     +.+.. + +.
T Consensus         2 ia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp~---dlpe~~~~~~~~~~~l~~lg~~~~~g~GC~C~~n~ll~~~   78 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD---DLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENALLNAL   78 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC---CCHHHHCEECCCCCEEEEEECCCCCCCCEECCHHHHHHHH
T ss_conf             7898899774999999999999978996999989897---1235542331787079999734358994088257899999


Q ss_pred             HHHHHHCCCCCEEEEECCCCC
Q ss_conf             999974489768998143332
Q gi|255764460|r  137 TDMLVRSGAVDIIVIDSVAAL  157 (363)
Q Consensus       137 ~~~li~~~~~~liViDSi~al  157 (363)
                      +..|+. ...+.+|+|.-+.+
T Consensus        79 l~~l~~-~~~~~VvvD~eAGi   98 (116)
T cd02034          79 LRHLVL-TRDEQVVVDTEAGL   98 (116)
T ss_pred             HHHHCC-CCCCEEEEECCCCH
T ss_conf             999706-79989999678548


No 469
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=95.70  E-value=0.017  Score=35.32  Aligned_cols=56  Identities=16%  Similarity=0.299  Sum_probs=42.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECC
Q ss_conf             26880799970687237899999987520089879999738855668899819883344897258
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD  128 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~  128 (363)
                      +..|-.+-+.|++||||||| |.+++...+.-.-.++++...--.|.        +||++++|-.
T Consensus         8 i~~GEFisliGHSGCGKSTL-LNli~Gl~~P~~G~v~L~G~~i~~PG--------PdRMVVFQNY   63 (230)
T TIGR01184         8 IRQGEFISLIGHSGCGKSTL-LNLISGLAQPTSGGVILEGKQITEPG--------PDRMVVFQNY   63 (230)
T ss_pred             EECCCEEEEECCCCCCHHHH-HHHHHHCCCCCCCCEEECCEECCCCC--------CCEEEEEECC
T ss_conf             52673699851278617899-99985005777761676262417876--------9604785062


No 470
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.70  E-value=0.02  Score=34.91  Aligned_cols=54  Identities=28%  Similarity=0.405  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHH--HHHHCCCEEEEEECCC--CCCHHHHHHHCC
Q ss_conf             726880799970687237899999987--5200898799997388--556688998198
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEH--ALDSIYARKLGV  117 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a--~~qk~g~~~~~iD~E~--~~~~~~a~~~Gv  117 (363)
                      =++.|.++-|.||.|||||||+-.++.  ..+...|.+ +++.+.  .++|....++|+
T Consensus        28 ~i~~Gei~aiiG~nGsGKSTL~~~i~G~~~~~~~~G~I-~~~G~~i~~~~~~~~~~~gi   85 (252)
T CHL00131         28 SINAGEIHAIMGPNGSGKSTLSKVIAGHPAYTVLEGDI-LFKGESILELEPEERAHLGI   85 (252)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEE-EECCEECCCCCHHHHHHCCE
T ss_conf             88799899999999999999999972787667664259-98772768599999986596


No 471
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.69  E-value=0.12  Score=30.00  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             7999706872378999999875200898799997388556
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD  108 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~  108 (363)
                      .+-|||--+.||||++-.+.+...++|..|+-||..-..|
T Consensus         2 kiaiyGKGGIGKSTttaNl~aaLA~~G~kVl~IgcDpk~D   41 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD   41 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf             7999779965787789999999998799599977899515


No 472
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=95.68  E-value=0.12  Score=30.00  Aligned_cols=87  Identities=28%  Similarity=0.271  Sum_probs=59.1

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HH---HHHH----CCC-----------------HHHEE
Q ss_conf             79997068723789999998752008987999973885566-88---9981----988-----------------33448
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-IY---ARKL----GVD-----------------LKNLL  123 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-~~---a~~~----Gvd-----------------~~~l~  123 (363)
                      |+--.|--+.||||....+-+...+.|.+++.||+.-.+.. +.   +|+.    -||                 .++|+
T Consensus         5 IVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~   84 (272)
T COG2894           5 IVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENLF   84 (272)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCCCCCCCEE
T ss_conf             99944888767431067789999973985999966767204466643420156540134447663656764035678526


Q ss_pred             EEEC--------CCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9725--------84899999999997448976899814333
Q gi|255764460|r  124 ISQP--------DTGEQALEITDMLVRSGAVDIIVIDSVAA  156 (363)
Q Consensus       124 ~~~~--------~~~E~~~~i~~~li~~~~~~liViDSi~a  156 (363)
                      +.+.        -+.|++-.+++.|.. ..+|.|++||=++
T Consensus        85 lLPAsQtrdKdalt~E~v~~vv~eL~~-~~fDyIi~DsPAG  124 (272)
T COG2894          85 LLPASQTRDKDALTPEGVKKVVNELKA-MDFDYIIIDSPAG  124 (272)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCH
T ss_conf             614432367222799999999999976-6998899648406


No 473
>KOG1533 consensus
Probab=95.68  E-value=0.016  Score=35.57  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=26.4

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHCCCE--EEEEECCCCCCH
Q ss_conf             97068723789999998752008987--999973885566
Q gi|255764460|r   72 IYGPESSGKTTLALHTIAQSQKTGGT--CAFVDAEHALDS  109 (363)
Q Consensus        72 i~G~~~sGKTtlal~~~a~~qk~g~~--~~~iD~E~~~~~  109 (363)
                      |.|||||||||.|...-.-.-..|..  ++=+|--+-..|
T Consensus         7 VIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~   46 (290)
T KOG1533           7 VIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLP   46 (290)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf             8769999853113209999997489627995687656788


No 474
>COG1204 Superfamily II helicase [General function prediction only]
Probab=95.67  E-value=0.036  Score=33.32  Aligned_cols=97  Identities=30%  Similarity=0.418  Sum_probs=61.4

Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCHH------HHHHHCCCHH-----
Q ss_conf             789997238972688079997068723789999998752008-9879999738855668------8998198833-----
Q gi|255764460|r   53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSI------YARKLGVDLK-----  120 (363)
Q Consensus        53 ~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~~~------~a~~~Gvd~~-----  120 (363)
                      +..-.++ ..|+..|.-..|.-|.+||||.+|+.++.+.-.. |++++||--=.++--+      +.+.+|+-..     
T Consensus        34 ~~qq~av-~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD  112 (766)
T COG1204          34 NPQQEAV-EKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGD  112 (766)
T ss_pred             HHHHHHH-HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             7899874-111257986799767888669999999999998559838999075999999999866688659779996488


Q ss_pred             ----H-------EEEEECCCHHHHHHHHHHHHHC-----CCCCEEEEECCCCC
Q ss_conf             ----4-------4897258489999999999744-----89768998143332
Q gi|255764460|r  121 ----N-------LLISQPDTGEQALEITDMLVRS-----GAVDIIVIDSVAAL  157 (363)
Q Consensus       121 ----~-------l~~~~~~~~E~~~~i~~~li~~-----~~~~liViDSi~al  157 (363)
                          .       ++|.   |.|..    +.+.|.     ..+++||||=+-.+
T Consensus       113 ~~~~~~~l~~~~ViVt---T~EK~----Dsl~R~~~~~~~~V~lvViDEiH~l  158 (766)
T COG1204         113 YDLDDERLARYDVIVT---TPEKL----DSLTRKRPSWIEEVDLVVIDEIHLL  158 (766)
T ss_pred             CCCCHHHHCCCCEEEE---CHHHH----HHHHHCCCCHHHCCCEEEEEEEEEC
T ss_conf             6555334145887997---46786----6765067533340168999421014


No 475
>cd03288 ABCC_SUR2 The SUR domain 2.  The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.65  E-value=0.019  Score=35.04  Aligned_cols=41  Identities=27%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             972688079997068723789999998752008987999973
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA  103 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~  103 (363)
                      ==+|+|..+-|.|+.+||||||+..++.-.....|.+ ++|-
T Consensus        42 l~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I-~idg   82 (257)
T cd03288          42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDG   82 (257)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECC
T ss_conf             9987999999999999819999999960566788889-9998


No 476
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.61  E-value=0.013  Score=36.17  Aligned_cols=31  Identities=39%  Similarity=0.500  Sum_probs=22.8

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHH-HHHHC
Q ss_conf             26880799970687237899999987-52008
Q gi|255764460|r   64 FPKGRIVEIYGPESSGKTTLALHTIA-QSQKT   94 (363)
Q Consensus        64 ~p~Gri~ei~G~~~sGKTtlal~~~a-~~qk~   94 (363)
                      ||++++|-|.|.++||||+||+.++. +.|+.
T Consensus        23 IP~~~lvViTGvSGSGKSSLAFDTiyAEgqRr   54 (1809)
T PRK00635         23 FCPREIVLLTGVSGSGKSSLAFDTIYAAGRKR   54 (1809)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             16998899979988978999989999989889


No 477
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.61  E-value=0.18  Score=28.80  Aligned_cols=121  Identities=21%  Similarity=0.395  Sum_probs=61.3

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE--------EEEEECCC-CCCHH-----------------------
Q ss_conf             72688079997068723789999998752008987--------99997388-55668-----------------------
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT--------CAFVDAEH-ALDSI-----------------------  110 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~--------~~~iD~E~-~~~~~-----------------------  110 (363)
                      -+.+|..+-|.|+.|||||||+-.++.......|.        +.|+|-+. .++|+                       
T Consensus       341 ~i~~Ge~ialvG~NGsGKSTLlk~l~G~l~p~~G~i~~g~~~~i~y~~Q~~~~l~~~~tv~~~l~~~~~~~~~~~~~r~~  420 (632)
T PRK11147        341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQYRAELDPEKTVMDNLAEGKQEVMVNGKPRHV  420 (632)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEHHHHHHCCCCCCHHHHHHHCCHHCCCCHHHHHH
T ss_conf             35788779998898842779999860666899877998998707755154764597686999997323210115589999


Q ss_pred             --HHHHHCCCHHHEEE-EEC-CCHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             --89981988334489-725-848999-9999999744897689981433322026554345553022478887677677
Q gi|255764460|r  111 --YARKLGVDLKNLLI-SQP-DTGEQA-LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK  185 (363)
Q Consensus       111 --~a~~~Gvd~~~l~~-~~~-~~~E~~-~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk  185 (363)
                        ++.+++...+.+.. +.. .-+|.. +.++..|+.  ...++|+|=-++.     +|         ..      ....
T Consensus       421 ~~~L~~f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~~--~pnlLiLDEPTNh-----LD---------i~------s~e~  478 (632)
T PRK11147        421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK--PSNLLILDEPTND-----LD---------VE------TLEL  478 (632)
T ss_pred             HHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCC-----CC---------HH------HHHH
T ss_conf             9999985779889639155399999999999998577--9978999898765-----79---------99------9999


Q ss_pred             HHHHHCCCCCEEEEEECCCC
Q ss_conf             77642017818999863411
Q gi|255764460|r  186 LTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       186 l~~~~~k~~~~~i~iNQ~r~  205 (363)
                      |...+..+.-++||+.|=|.
T Consensus       479 Le~aL~~y~Gtvl~VSHDr~  498 (632)
T PRK11147        479 LEELLDSYQGTLLLVSHDRQ  498 (632)
T ss_pred             HHHHHHHCCCEEEEEECCHH
T ss_conf             99999858983999979899


No 478
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.60  E-value=0.017  Score=35.29  Aligned_cols=69  Identities=22%  Similarity=0.197  Sum_probs=46.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC-C--CH-HHEEEEECCCHHHHHH
Q ss_conf             9726880799970687237899999987520089879999738855668899819-8--83-3448972584899999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG-V--DL-KNLLISQPDTGEQALE  135 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~G-v--d~-~~l~~~~~~~~E~~~~  135 (363)
                      ..-|..|++ ++|+.+||||.+.+|+++-|..+|..+++|..-..    |..... .  +. ..-.|.||...-+.|.
T Consensus        19 ~~~~~~r~v-L~G~~GsGKS~~L~q~v~~A~~~~wiVl~vP~~~~----~~~~~~~~~~s~~~~~~ydqP~~a~~~L~   91 (274)
T pfam10236        19 ASKKVVRFV-LTGERGSGKSVLLAQAMAYALTQGWVVLHVPEAED----LVNGTTDYAPDPGNPGLYDQPMYAAALLQ   91 (274)
T ss_pred             CCCCCEEEE-EECCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHH----HHCCCCEEEECCCCCCEEECHHHHHHHHH
T ss_conf             479951899-88979977999999999999859989998498899----83086427688999971357899999999


No 479
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59  E-value=0.019  Score=35.00  Aligned_cols=40  Identities=30%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             72688079997068723789999998752008987999973
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA  103 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~  103 (363)
                      -+++|..+-|.|+.+||||||+-.++.-.+...|.+ +||.
T Consensus        24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g   63 (234)
T cd03251          24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDG   63 (234)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECC
T ss_conf             987999999998999829999999966766788689-9999


No 480
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.59  E-value=0.01  Score=36.76  Aligned_cols=27  Identities=41%  Similarity=0.672  Sum_probs=23.0

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             726880799970687237899999987
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIA   89 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a   89 (363)
                      =+|+|.++-|.|+.+||||||++.++.
T Consensus        17 ~i~~Ge~~aIvG~nGsGKSTL~~~~l~   43 (226)
T cd03270          17 DIPRNKLVVITGVSGSGKSSLAFDTIY   43 (226)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             985998999987899609898361663


No 481
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.59  E-value=0.074  Score=31.31  Aligned_cols=169  Identities=22%  Similarity=0.320  Sum_probs=78.7

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH--HHCCCEEEEEECCCC-CCHHHHHHHCCCHHHEEEE--ECC
Q ss_conf             89997238972688079997068723789999998752--008987999973885-5668899819883344897--258
Q gi|255764460|r   54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEHA-LDSIYARKLGVDLKNLLIS--QPD  128 (363)
Q Consensus        54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~--qk~g~~~~~iD~E~~-~~~~~a~~~Gvd~~~l~~~--~~~  128 (363)
                      ..|..|+ +    +|+.-|.||-++||||+.=.+....  ...|..   +-++.+ +.|         .++++..  ..|
T Consensus        21 pNdi~l~-~----~~~~iiTGpN~sGKSt~lkti~l~~~laq~G~~---vpa~~~~~~~---------~~~i~~~~~~~d   83 (202)
T cd03243          21 PNDINLG-S----GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF---VPAESASIPL---------VDRIFTRIGAED   83 (202)
T ss_pred             CCEEEEC-C----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCE---EEECCCEEEC---------CCEEEEEECCCH
T ss_conf             7828867-9----828999899887539999999999999983873---7204468944---------666999846602


Q ss_pred             C--------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             4--------89999999999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r  129 T--------GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI  200 (363)
Q Consensus       129 ~--------~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i  200 (363)
                      +        ..|+.++-..+-......+|++|=+..-+...  |          .+.+....++.+.    +.++.+|++
T Consensus        84 ~~~~~~S~F~~e~~~~~~i~~~~~~~slvliDE~~~gT~~~--e----------g~~la~a~l~~l~----~~~~~~i~t  147 (202)
T cd03243          84 SISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTA--E----------GLAIAYAVLEHLL----EKGCRTLFA  147 (202)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH--H----------HHHHHHHHHHHHH----HCCCEEEEE
T ss_conf             44435354999999999999867777724205234799867--8----------7999999999998----536849998


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             63411456654665125655311111124897504553445772476799987740577898515899986187423111
Q gi|255764460|r  201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG  280 (363)
Q Consensus       201 NQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~  280 (363)
                      .|..+=.. +   ++..++   ++++                      .+.+....+       +..|.-..-.|+...+
T Consensus       148 TH~~~L~~-~---~~~~~~---~~~~----------------------~~~~~~~~~-------~~~~~Ykl~~G~~~~s  191 (202)
T cd03243         148 THFHELAD-L---PEQVPG---VKNL----------------------HMEELITTG-------GLTFTYKLIDGICDPS  191 (202)
T ss_pred             ECCHHHHH-H---HHCCCC---EEEE----------------------EEEEEEECC-------EEEEEEEECCCCCCCC
T ss_conf             25388887-5---313897---4999----------------------999999799-------0869889888999865


Q ss_pred             HHHHHHHHCCC
Q ss_conf             59999973286
Q gi|255764460|r  281 ELIDLGVKASI  291 (363)
Q Consensus       281 ~lldla~~~gi  291 (363)
                      --+++|...|+
T Consensus       192 ~ai~ia~~~Gl  202 (202)
T cd03243         192 YALQIAELAGL  202 (202)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999998589


No 482
>KOG0730 consensus
Probab=95.58  E-value=0.032  Score=33.60  Aligned_cols=114  Identities=25%  Similarity=0.274  Sum_probs=71.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566889981988334489725848999999999974
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~  142 (363)
                      |+.+-+=+.+||||+||||++|-.++-+++..   .+.|-.     |+....+=           .-.|.++.-+-...+
T Consensus       464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n---Flsvkg-----pEL~sk~v-----------GeSEr~ir~iF~kAR  524 (693)
T KOG0730         464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMN---FLSVKG-----PELFSKYV-----------GESERAIREVFRKAR  524 (693)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEECCC-----HHHHHHHC-----------CCHHHHHHHHHHHHH
T ss_conf             57887547777899862478999986463587---264157-----89987751-----------825899999999986


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EE
Q ss_conf             489768998143332202655434555302247888767767777642017818999-86
Q gi|255764460|r  143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF-IN  201 (363)
Q Consensus       143 ~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iN  201 (363)
                      +-+..+|++|=+.++....  .++.   . +..-|.+|+.|+-|-..-.+.++.+|. ||
T Consensus       525 ~~aP~IiFfDEiDsi~~~R--~g~~---~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATN  578 (693)
T KOG0730         525 QVAPCIIFFDEIDALAGSR--GGSS---S-GVTDRVLSQLLTEMDGLEALKNVLVIAATN  578 (693)
T ss_pred             HCCCEEEEHHHHHHHHHCC--CCCC---C-CHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf             2698377446666666304--7875---5-148999999998700410147089995058


No 483
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.58  E-value=0.02  Score=34.94  Aligned_cols=48  Identities=29%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             72789997238972688079997068723789999998752008987999
Q gi|255764460|r   51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF  100 (363)
Q Consensus        51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~  100 (363)
                      +..+|+- +. =-++.|.++-|.|+.+||||||+-++..-.....|.+.+
T Consensus        18 ~~~aL~d-Is-l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~   65 (288)
T PRK13643         18 ASRALFD-ID-LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV   65 (288)
T ss_pred             CCEEEEE-EE-EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             2733663-36-798599899999999947999999997488888856999


No 484
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules.  Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells.  Subsequently, virus-infected or malignantly transformed cells can be eliminated.  TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.55  E-value=0.021  Score=34.80  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=28.9

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             726880799970687237899999987520089879999738
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE  104 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E  104 (363)
                      =+++|.++-|.|+.+||||||+-.++.-.+...|. ++||..
T Consensus        36 ~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~-I~idg~   76 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ-VLLDGK   76 (226)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCE
T ss_conf             98299999999999984999999996454678878-999999


No 485
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.54  E-value=0.043  Score=32.77  Aligned_cols=187  Identities=18%  Similarity=0.262  Sum_probs=86.4

Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH--HHCCCEEEEEECCC-CCCHH--HHHHHCCCHHHEEEEEC
Q ss_conf             789997238972688079997068723789999998752--00898799997388-55668--89981988334489725
Q gi|255764460|r   53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEH-ALDSI--YARKLGVDLKNLLISQP  127 (363)
Q Consensus        53 ~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~--qk~g~~~~~iD~E~-~~~~~--~a~~~Gvd~~~l~~~~~  127 (363)
                      ..-|..|+ +  +.+|+.-|.||.++||||+.=++....  ...|.   |+-++. .+.|-  ...++| +.|.+.--..
T Consensus        19 VpNdi~l~-~--~~~~~~iiTGpN~sGKSt~lk~i~l~~ilaq~G~---~vpA~~~~~~~~d~i~~~i~-~~d~~~~~~S   91 (218)
T cd03286          19 VPNDVDLG-A--TSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM---DVPAKSMRLSLVDRIFTRIG-ARDDIMKGES   91 (218)
T ss_pred             ECCEEEEC-C--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC---CEECCCCEEECCCEEEEEEC-CCCCHHHHHH
T ss_conf             87568867-9--9740899989998873899999999999998288---43014647734664899745-8661431150


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf             84899999999997448976899814333220265543455530224788876776777764201781899986341145
Q gi|255764460|r  128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI  207 (363)
Q Consensus       128 ~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~i  207 (363)
                      ....|+.++...|-..+.-.||++|=++.-+...  |+          ..+....   +..+..+.++.++|+.|..+=.
T Consensus        92 tF~~e~~~~~~il~~~~~~sLvllDE~~~GT~~~--eg----------~ala~ai---le~L~~~~~~~~i~tTH~~el~  156 (218)
T cd03286          92 TFMVELSETANILRHATPDSLVILDELGRGTSTH--DG----------YAIAHAV---LEYLVKKVKCLTLFSTHYHSLC  156 (218)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCH--HH----------HHHHHHH---HHHHHHCCCCEEEEECCCHHHH
T ss_conf             6999999999999867998501025546899811--67----------9999999---9999863797699976728999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf             66546651256553111111248975045534457724767999877405778985158999861874231115999997
Q gi|255764460|r  208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV  287 (363)
Q Consensus       208 g~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~  287 (363)
                      ....-.|..       ++                      ..+.+. +.+...+-..+..|.-..-.|+...+-=+++|.
T Consensus       157 ~~~~~~~~v-------~~----------------------~~m~~~-~~~~~~~~~~~l~f~YkL~~G~~~~s~ai~iA~  206 (218)
T cd03286         157 DEFHEHGGV-------RL----------------------GHMACA-VKNESDPTIRDITFLYKLVAGICPKSYGLYVAL  206 (218)
T ss_pred             HHHHHCCCC-------EE----------------------EEEEEE-EECCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
T ss_conf             988648891-------89----------------------889999-963677878713288698879998719999999


Q ss_pred             HCCC
Q ss_conf             3286
Q gi|255764460|r  288 KASI  291 (363)
Q Consensus       288 ~~gi  291 (363)
                      ..|+
T Consensus       207 ~~G~  210 (218)
T cd03286         207 MAGI  210 (218)
T ss_pred             HHCC
T ss_conf             9590


No 486
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.54  E-value=0.038  Score=33.14  Aligned_cols=54  Identities=30%  Similarity=0.499  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCC--CCCH-HHHHHHCCC
Q ss_conf             7268807999706872378999999875200-898799997388--5566-889981988
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH--ALDS-IYARKLGVD  118 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~--~~~~-~~a~~~Gvd  118 (363)
                      -++.|.++-|.||.+||||||. .++....+ ..|. +++|...  .+++ ++++++|+-
T Consensus        24 ~I~~GEi~gLIGPNGAGKSTLL-k~I~Gll~P~~G~-V~l~G~~i~~~~~~elar~ia~v   81 (409)
T PRK09536         24 SVREGHLVGVVGPNGAGKTTLL-RAMNGLITPTAGT-VLVAGDDVHALSAAAASRQVATV   81 (409)
T ss_pred             EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEE-EEECCEECCCCCHHHHHHHHEEE
T ss_conf             9889989999999872799999-9996688889639-99999998879989996233484


No 487
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1.  In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD.  MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.52  E-value=0.021  Score=34.83  Aligned_cols=53  Identities=23%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHC
Q ss_conf             726880799970687237899999987520089879999738--855668-899819
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLG  116 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~G  116 (363)
                      -+|+|..+-|.|+.+||||||+--++.-.....|. ++||..  ..+++. +.+.++
T Consensus        25 ~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~-I~idg~~i~~~~~~~~r~~i~   80 (238)
T cd03249          25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE-ILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EEECCEECCCCCHHHHHHCEE
T ss_conf             97699999999999998999999982386188518-999999923189999974069


No 488
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function.  Barmotin belongs to the SMC protein family.  SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.51  E-value=0.0096  Score=36.92  Aligned_cols=22  Identities=41%  Similarity=0.783  Sum_probs=19.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHH
Q ss_conf             97268807999706872378999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLA   84 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtla   84 (363)
                      =-||.| +|-|.||.+||||||.
T Consensus        18 l~ip~G-itaIvGpsGsGKSTLl   39 (197)
T cd03278          18 IPFPPG-LTAIVGPNGSGKSNII   39 (197)
T ss_pred             EECCCC-EEEEECCCCCCHHHHH
T ss_conf             973898-2899999999889999


No 489
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport.  These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2).  No known transmembrane proteins or domains are associated with these proteins.
Probab=95.50  E-value=0.15  Score=29.44  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=22.4

Q ss_pred             CHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             2789997238972688079997068723789999998
Q gi|255764460|r   52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI   88 (363)
Q Consensus        52 ~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~   88 (363)
                      ....|.-++     .|+++-|.||.++||||+.=.+.
T Consensus        11 ~vpndi~l~-----~g~~~iItGpN~sGKSt~Lr~i~   42 (162)
T cd03227          11 FVPNDVTFG-----EGSLTIITGPNGSGKSTILDAIG   42 (162)
T ss_pred             EECCCEECC-----CCCEEEEECCCCCCHHHHHHHHH
T ss_conf             507702608-----98689998998775799999999


No 490
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer,  which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.49  E-value=0.15  Score=29.30  Aligned_cols=92  Identities=17%  Similarity=0.331  Sum_probs=59.5

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC---CCCCC-HHHHHHH-CCCHHH----EEEEECC------CH
Q ss_conf             88079997068723789999998752008987999973---88556-6889981-988334----4897258------48
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA---EHALD-SIYARKL-GVDLKN----LLISQPD------TG  130 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~---E~~~~-~~~a~~~-Gvd~~~----l~~~~~~------~~  130 (363)
                      +| ++.||=-.+=||||-|+-.+..+.-.|..|+++-.   ..... -..++++ +++.-+    .++...+      .+
T Consensus         2 ~G-li~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~i~~~~~g~~~~~~~~~~~~~~~~a   80 (159)
T cd00561           2 KG-LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA   80 (159)
T ss_pred             CC-EEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             84-79999579997089999999998449998999998158987559999984899689988999732279879999999


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             9999999999744897689981433322
Q gi|255764460|r  131 EQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       131 E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      .++++.+...+.++..|++|+|=+....
T Consensus        81 ~~~~~~a~~~l~~~~~dlvVLDEi~~a~  108 (159)
T cd00561          81 AEGWAFAKEAIASGEYDLVILDEINYAL  108 (159)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEHHHHHHH
T ss_conf             9999999999868898999736689999


No 491
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.49  E-value=0.037  Score=33.24  Aligned_cols=71  Identities=21%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCH-HHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf             726880799970687237899999987520089879999738-85566-889981988334489725848999
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-HALDS-IYARKLGVDLKNLLISQPDTGEQA  133 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E-~~~~~-~~a~~~Gvd~~~l~~~~~~~~E~~  133 (363)
                      -+++|.++-|-||.++|||||.-.++.+....+|.|.|.--- +++.| +.|...+|-+-+.-++=|-++.++
T Consensus        23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV   95 (259)
T COG4559          23 DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV   95 (259)
T ss_pred             ECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHCCCCCCCCCCEEHHHH
T ss_conf             4168727999888986588899986176378887676679281237999998775004467600154279999


No 492
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.46  E-value=0.11  Score=30.35  Aligned_cols=130  Identities=17%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH--HHCCCEEEEEECCC-CCCH--HHHHHHCCCHHHEEEEEC
Q ss_conf             789997238972688079997068723789999998752--00898799997388-5566--889981988334489725
Q gi|255764460|r   53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEH-ALDS--IYARKLGVDLKNLLISQP  127 (363)
Q Consensus        53 ~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~--qk~g~~~~~iD~E~-~~~~--~~a~~~Gvd~~~l~~~~~  127 (363)
                      .+-|..|+    +.+|+.-|.||..+|||++.=++...+  ...|.   |+-++. .+.|  ....++|. .|.+.--+.
T Consensus        20 VpNdi~l~----~~~~~~iiTGpN~sGKSt~Lk~igl~~ilaq~G~---~vpA~~a~i~~~d~I~t~i~~-~d~i~~~~S   91 (216)
T cd03284          20 VPNDTELD----PERQILLITGPNMAGKSTYLRQVALIALLAQIGS---FVPASKAEIGVVDRIFTRIGA-SDDLAGGRS   91 (216)
T ss_pred             ECCEEEEC----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC---EEEECCEEEEECCEEEEEECC-CCHHHCCCC
T ss_conf             76568978----9845999989987745999999999999998687---587661599704469995068-621333726


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             848999999999974489768998143332202655434555302247888767767777642017818999863411
Q gi|255764460|r  128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       128 ~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      ...-+..++...+-......||++|=++.-+...|  +          +.+....+..   .+.+.++.++|+.|..+
T Consensus        92 tF~~e~~~~~~il~~a~~~sLvliDEl~~gT~~~e--g----------~ala~aile~---L~~~~~~~~i~tTH~~~  154 (216)
T cd03284          92 TFMVEMVETANILNNATERSLVLLDEIGRGTSTYD--G----------LSIAWAIVEY---LHEKIGAKTLFATHYHE  154 (216)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH--H----------HHHHHHHHHH---HHHCCCCEEEEEECHHH
T ss_conf             58999999999998487761563344568998578--8----------9999999999---99707972897505088


No 493
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=95.43  E-value=0.024  Score=34.44  Aligned_cols=39  Identities=23%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCCC
Q ss_conf             7999706872378999999875200-89879999738855
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHAL  107 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~~~  107 (363)
                      -|.|.||.++|||+|..-+++++|| .+..+..+|--.++
T Consensus       490 HTlIiGpTGaGKTvll~fL~aQ~~rY~~~~vf~FDK~~S~  529 (852)
T PRK13891        490 HTFMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAFDKGMSM  529 (852)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCH
T ss_conf             4078789999889999999999744189818987898523


No 494
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria.  Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41  E-value=0.021  Score=34.79  Aligned_cols=54  Identities=26%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHC
Q ss_conf             9726880799970687237899999987520089879999738--855668-899819
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLG  116 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~G  116 (363)
                      =-+|+|..+-|.|+.+||||||+-.++.-.....|.+ +||..  ..+++. +.+++|
T Consensus        22 l~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I-~idg~di~~~~~~~~r~~i~   78 (236)
T cd03253          22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDSLRRAIG   78 (236)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE-EECCEECCCCCHHHHHHCEE
T ss_conf             9986999999999999989999999743854887489-99999923189999972378


No 495
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.40  E-value=0.024  Score=34.39  Aligned_cols=66  Identities=24%  Similarity=0.301  Sum_probs=43.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHH-HHHHCCC-----------HHHEEEEEC
Q ss_conf             9726880799970687237899999987520089879999738--8556688-9981988-----------334489725
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIY-ARKLGVD-----------LKNLLISQP  127 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~-a~~~Gvd-----------~~~l~~~~~  127 (363)
                      ==+|+|..+-|.|++|||||||+--++.-.....|.+ +||.-  ..++++. -+++|+=           -+|+.+.+|
T Consensus       336 l~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I-~idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~eNI~lg~~  414 (569)
T PRK10789        336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP  414 (569)
T ss_pred             CEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-EEECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCC
T ss_conf             6888997899879999987999999997764267874-650101342576888631476588750256629999865797


Q ss_pred             C
Q ss_conf             8
Q gi|255764460|r  128 D  128 (363)
Q Consensus       128 ~  128 (363)
                      +
T Consensus       415 ~  415 (569)
T PRK10789        415 D  415 (569)
T ss_pred             C
T ss_conf             7


No 496
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1).  NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters.  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.40  E-value=0.03  Score=33.83  Aligned_cols=55  Identities=20%  Similarity=0.215  Sum_probs=34.8

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCH-HHHHHHCC
Q ss_conf             97268807999706872378999999875200898799997388--5566-88998198
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDS-IYARKLGV  117 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~-~~a~~~Gv  117 (363)
                      =-+++|..+-|.|+.+||||||+-.++.-.....|. ++||...  .++. .+.+.+|+
T Consensus        29 l~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G~-I~idg~di~~~~~~~~r~~i~~   86 (207)
T cd03369          29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRSSLTI   86 (207)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCE-EEECCEECCCCCHHHHHHHCEE
T ss_conf             898699999999999987999999999872888878-9999999540799999951537


No 497
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=95.39  E-value=0.015  Score=35.64  Aligned_cols=30  Identities=33%  Similarity=0.399  Sum_probs=26.1

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             726880799970687237899999987520
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q   92 (363)
                      -||-|.+|-|.|.++||||||-..+++.+.
T Consensus       661 ~iPLG~~t~iTGVSGSGKSTLind~L~~~~  690 (956)
T TIGR00630       661 SIPLGLFTCITGVSGSGKSTLINDTLYPAL  690 (956)
T ss_pred             EECCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             740771799974458745777999999999


No 498
>KOG0652 consensus
Probab=95.39  E-value=0.13  Score=29.69  Aligned_cols=118  Identities=25%  Similarity=0.386  Sum_probs=61.2

Q ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHH
Q ss_conf             72688079997068723789999998752008987999973885566889981988334489725848999999999974
Q gi|255764460|r   63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~  142 (363)
                      |+.+-+=+.+||||++|||.+|-.+++++-.     -|           .+--|-.+-.+++-  +-+ ....-+-.|.+
T Consensus       201 gi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-----TF-----------LKLAgPQLVQMfIG--dGA-kLVRDAFaLAK  261 (424)
T KOG0652         201 GIRPPKGVLMYGPPGTGKTLMARACAAQTNA-----TF-----------LKLAGPQLVQMFIG--DGA-KLVRDAFALAK  261 (424)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----HH-----------HHHCCHHHHHHHHC--CHH-HHHHHHHHHHH
T ss_conf             8889972276579997577999999874010-----68-----------87326477766533--418-89999998753


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf             489768998143332202655434-555302247888767767777642017818999-8634
Q gi|255764460|r  143 SGAVDIIVIDSVAALTPRAEIEGD-MGESLPGMQARLMSQALRKLTSSISRSKCILVF-INQM  203 (363)
Q Consensus       143 ~~~~~liViDSi~al~p~~Eie~~-~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iNQ~  203 (363)
                      +.+..+|+||-+.|.-++. ++.+ .||.   .-.|-|-..|..|-.......+-+|. +|.+
T Consensus       262 EkaP~IIFIDElDAIGtKR-fDSek~GDR---EVQRTMLELLNQLDGFss~~~vKviAATNRv  320 (424)
T KOG0652         262 EKAPTIIFIDELDAIGTKR-FDSEKAGDR---EVQRTMLELLNQLDGFSSDDRVKVIAATNRV  320 (424)
T ss_pred             CCCCEEEEEECHHHHCCCC-CCCCCCCCH---HHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf             3498389973002323343-653123438---9999999999860489975626788521643


No 499
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined.  Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.39  E-value=0.07  Score=31.47  Aligned_cols=131  Identities=21%  Similarity=0.269  Sum_probs=59.4

Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH--HHCCCEEEEEECCC-CCCH--HHHHHHCCCHHHEEEEEC
Q ss_conf             789997238972688079997068723789999998752--00898799997388-5566--889981988334489725
Q gi|255764460|r   53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEH-ALDS--IYARKLGVDLKNLLISQP  127 (363)
Q Consensus        53 ~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~--qk~g~~~~~iD~E~-~~~~--~~a~~~Gvd~~~l~~~~~  127 (363)
                      ..-|..|+ .  +..|+.-|.||-.||||++.=++...+  ...|.   |+-++. .+.+  ....++| +.|.+.--..
T Consensus        19 VpNdi~l~-~--~~~~i~iiTGpN~sGKSt~lk~i~l~~~laq~G~---~vpa~~~~~~~~d~i~t~i~-~~d~~~~~~S   91 (222)
T cd03285          19 IPNDVTLT-R--GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC---FVPCDSADIPIVDCILARVG-ASDSQLKGVS   91 (222)
T ss_pred             ECCEEEEC-C--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC---CEEEEEEEEECCCEEEEEEC-CCCCCCCCHH
T ss_conf             77668976-8--9825999989998871899999999999998687---54632389952764999988-9971003352


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             848999999999974489768998143332202655434555302247888767767777642017818999863411
Q gi|255764460|r  128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       128 ~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
                      ...-+..++...+-....-.||++|=++.=+...|          |  +.+...   .+...+.+.++.++|+.|..+
T Consensus        92 tF~~e~~~~~~il~~~~~~sLvliDElg~GT~~~e----------g--~aia~a---ile~L~~~~~~~~i~tTH~~~  154 (222)
T cd03285          92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYD----------G--FGLAWA---IAEYIATQIKCFCLFATHFHE  154 (222)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHH----------H--HHHHHH---HHHHHHHCCCCEEEEEEECHH
T ss_conf             89999999999998476773200023468988226----------7--999999---999998506850999820077


No 500
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.39  E-value=0.13  Score=29.82  Aligned_cols=101  Identities=26%  Similarity=0.348  Sum_probs=58.8

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC-----CEEEEEECCCCCCHHHHHHH--CCCH
Q ss_conf             0147727899972389726880799970687237899999987520089-----87999973885566889981--9883
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVDAEHALDSIYARKL--GVDL  119 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g-----~~~~~iD~E~~~~~~~a~~~--Gvd~  119 (363)
                      .++|-+  +|.+..   |-+|.=-.|..||.+|||+|. +-+|++...+     -+++.||--    |+-...+  .|. 
T Consensus       396 ~~t~Ri--iDl~~P---iGkGQRgLIVapPkaGKT~ll-~~ia~ai~~N~pe~~l~vlLiDER----PEEVTdm~r~v~-  464 (667)
T PRK12678        396 KLTTRV--IDLIMP---IGKGQRGLIVSPPKAGKTTIL-QDIANAITTNNPECHLMVVLVDER----PEEVTDMQRSVK-  464 (667)
T ss_pred             CCCHHH--HEEECC---CCCCCEEEEECCCCCCCHHHH-HHHHHHHHHCCCCEEEEEEECCCC----CHHHHHHHHCCC-
T ss_conf             532223--011135---678845467579978725999-999999985699728999973788----515667664046-


Q ss_pred             HHEEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             344897258--------489999999999744897689981433322
Q gi|255764460|r  120 KNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
                      -.++.+.-|        .+|-+++-+..|++.|.-.+|++|||+-|.
T Consensus       465 geViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLa  511 (667)
T PRK12678        465 GEVIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLG  511 (667)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf             06998668898888999999999999998756997799964066888


Done!