HHsearch alignment for GI: 255764460 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=100.00 E-value=0 Score=764.32 Aligned_cols=322 Identities=73% Similarity=1.145 Sum_probs=315.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999986761887379703665533465501477278999723897268807999706872378999999875200
Q gi|255764460|r 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 (363)
Q Consensus 14 ~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk 93 (363)
T Consensus 1 ~~l~~~~~~i~k~~g~~~i~~~~~~~--~~~~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk 78 (322)
T pfam00154 1 KALEAALSQIEKQFGKGSIMRLGDKT--VEDVEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQK 78 (322)
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCC--CCCCCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 95899999999973987458888877--7775446158089999875899778708999889877789999999999973
Q ss_pred CCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 89879999738855668899819883344897258489999999999744897689981433322026554345553022
Q gi|255764460|r 94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 (363)
Q Consensus 94 ~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g 173 (363)
T Consensus 79 ~gg~~~~iD~E~a~d~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g 158 (322)
T pfam00154 79 AGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVG 158 (322)
T ss_pred CCCEEEEEEHHHHCCHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 49938998536605988999809880253897788399999999998537997659982534567688875243223213
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEE
Q ss_conf 47888767767777642017818999863411456654665125655311111124897504553445772476799987
Q gi|255764460|r 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 (363)
Q Consensus 174 ~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~k 253 (363)
T Consensus 159 ~~Ar~ms~alRklt~~l~k~~~~~IfiNQ~R~kiG~mfg~pe~t~GG~Alkf~aSvri~l~k~~~iK~g~~~vG~~i~~k 238 (322)
T pfam00154 159 LQARLMSQALRKLTGNISKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGEEVIGNRTKVK 238 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf 57999999999999997305854999765511146646998547786425411003787765010146786336999999
Q ss_pred EEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74057789851589998618742311159999973286230274478889450303899999986679999999999999
Q gi|255764460|r 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 (363)
Q Consensus 254 v~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~enp~l~~~i~~~ire 333 (363)
T Consensus 239 vvKnK~a~P~~~ae~~i~y~~GId~~~~lldla~~~giI~k~Gawy~y~ge~~~qG~~~~~~~l~e~~~l~~~i~~~i~~ 318 (322)
T pfam00154 239 VVKNKVAPPFKQAEFDIMYGEGISKEGELIDLGVKLGIVEKSGAWYSYNGEKIGQGRENAKQYLKENPEIAAEIEQKIRE 318 (322)
T ss_pred EEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCEEECCEEECCHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 98367489986799996158876643259999997796772256099899886245999999988699999999999999
Q ss_pred HHCC
Q ss_conf 8177
Q gi|255764460|r 334 NAGL 337 (363)
Q Consensus 334 ~~~~ 337 (363)
T Consensus 319 ~~~~ 322 (322)
T pfam00154 319 KLGL 322 (322)
T ss_pred HHCC
T ss_conf 8396