>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.

Probab=99.88 E-value=1e-20 Score=150.54 Aligned_cols=203 Identities=25% Similarity=0.354 Sum_probs=138.5 Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH--- Q ss_conf 1477278999723897268807999706872378999999875-2008987999973885566--889981988334--- Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDS--IYARKLGVDLKN--- 121 (363) Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~--- 121 (363) T Consensus 1 i~TGi~~LD~~l~-GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~ 79 (231) T pfam06745 1 VKTGIPGLDEILK-GGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEE 79 (231) T ss_pred CCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHH T ss_conf 9889556886316-998299699998589725999999999999986589689998137999999999982998589864 Q ss_pred ---EEEEE--C-----------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf ---48972--5-----------8489999999999744897689981433322026554345553022478887677677 Q gi|255764460|r 122 ---LLISQ--P-----------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 (363) Q Consensus 122 ---l~~~~--~-----------~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk 185 (363) T Consensus 80 ~g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~--~----~----~~~---r~~l~~ 146 (231) T pfam06745 80 EGKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLL--K----P----AMA---REILRR 146 (231) T ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC--C----H----HHH---HHHHHH T ss_conf 69678986254422210011227999999999999997199889997641640058--8----9----999---999999 Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCC- Q ss_conf 776420178189998634114566546651256553111-111248975045534457724767999877405778985- Q gi|255764460|r 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK-FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF- 263 (363) Q Consensus 186 l~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~-~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~- 263 (363) T Consensus 147 l~~~lk~~g~t~l~t~e~~~~~~--------~~~~~~~~~~l~D~vI~L~~~~~---~~---~~~R~l~I~K~Rg~~~~~ 212 (231) T pfam06745 147 LKRVLKKLGVTAIFTSEKPSGEG--------GIGGYGVEEFVVDGVIRLDLKEI---EG---ELVRTIEIVKMRGTPHSM 212 (231) T ss_pred HHHHHHHCCCEEEEEEEECCCCC--------CCCCCCHHHHEEEEEEEEEEECC---CC---EEEEEEEEEECCCCCCCC T ss_conf 99999976991999982125777--------65676301110036999998824---99---899999999866998789 Q ss_pred CEEEEEEECCCCCCCC Q ss_conf 1589998618742311 Q gi|255764460|r 264 KQVEFDIMYGEGISFF 279 (363) Q Consensus 264 ~~a~~~i~fg~GI~~~ 279 (363) T Consensus 213 ~~~~f~I-t~~Gi~i~ 227 (231) T pfam06745 213 KRYPFEI-TDNGIVVY 227 (231) T ss_pred CEEEEEE-ECCCEEEE T ss_conf 4799999-08987990

HHsearch alignment for GI: 255764460 and conserved domain: pfam06745