RPSBLAST alignment for GI: 255764460 and conserved domain: TIGR00416

>gnl|CDD|161868 TIGR00416, sms, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). Length = 454

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
            SSG   LD  LG GG   G ++ I G    GK+TL L    Q  K      +V  E +L
Sbjct: 76  FSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL 134

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             I  R  +LG+   NL +      E   E     +        VIDS+  L
Sbjct: 135 QQIKMRAIRLGLPEPNLYV----LSETNWEQICANIEEENPQACVIDSIQTL 182