HHsearch alignment for GI: 255764461 and conserved domain: COG0018

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.88  E-value=2.2e-20  Score=169.78  Aligned_cols=345  Identities=22%  Similarity=0.277  Sum_probs=205.2

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC----------------------------CCC
Q ss_conf             8881799788899998832224789789999999988589803623643----------------------------702
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT----------------------------DEH   54 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~----------------------------D~h   54 (511)
T Consensus       115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~  194 (577)
T COG0018         115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY  194 (577)
T ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             99879998747999998523323536889999999998399766786678579999999999999554101377772068


Q ss_pred             -CHHH-HHH--HHH-CCC---------------CHH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             -2799-999--998-399---------------989-----999999999999999808898867477888899999999
Q gi|255764461|r   55 -GQKI-AKA--AQN-AGV---------------TTK-----VFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRIL  109 (511)
Q Consensus        55 -g~~i-~~~--A~~-~g~---------------~p~-----e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~  109 (511)
T Consensus       195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~v  274 (577)
T COG0018         195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKV  274 (577)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCHHHH
T ss_conf             89999999999974846126788999998864775789999999999999999999929530013234265526649999


Q ss_pred             HHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             88875431022110001011334301556672111222222223320000345443446664444434443333210006
Q gi|255764461|r  110 WKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILP  189 (511)
Q Consensus       110 ~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p  189 (511)
T Consensus       275 v~~L~~~~~~~e~--~GA~~vd-------------------------------------l~~~~----~~----------  301 (577)
T COG0018         275 VEDLEEKGLLYED--DGALVVD-------------------------------------LLKFK----KF----------  301 (577)
T ss_pred             HHHHHHCCCEEEE--CCEEEEE-------------------------------------HHHHH----HC----------
T ss_conf             9999866977600--9958986-------------------------------------43211----11----------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             76545775410345675323433377765786422214646024443220012346765431000241100004564321
Q gi|255764461|r  190 IERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR  269 (511)
Q Consensus       190 ~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~  269 (511)
T Consensus       302 ------------gd~~~~vl~KSD---Gt--------~lY~t~D--IAy---~~~K~~--~~~----d~~IyV~gadq~~  347 (577)
T COG0018         302 ------------GDDKDRVLQKSD---GT--------YLYFTRD--IAY---HLYKFE--RGF----DKLIYVLGADQHG  347 (577)
T ss_pred             ------------CCCCCEEEEECC---CC--------EEEEHHH--HHH---HHHHHH--CCC----CEEEEEECCCCHH
T ss_conf             ------------687772899769---97--------0542538--999---999973--699----8899996786244


Q ss_pred             HHCCHHHHHHHHHHHHCCCCCCCCCC---EEE-CCCCCCHHHCCCCCCCCHHHHCC----------------------CC
Q ss_conf             00010247765433101232333430---330-58601000002211100000022----------------------11
Q gi|255764461|r  270 FHAIYWPAFLLSANLPLPKKVFSHGF---ILH-KGEKISKSLGNVIDPIEVIEEVG----------------------VD  323 (511)
Q Consensus       270 Fh~i~~pa~l~~~~~~~p~~i~~~g~---l~~-~G~KMSKS~GN~I~~~e~l~~~g----------------------~D  323 (511)
T Consensus       348 ~~~ql~-~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~  426 (577)
T COG0018         348 HFKQLK-AVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGID  426 (577)
T ss_pred             HHHHHH-HHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999-9999846998656189997752577877634224886578999999998876667654321157777775240


Q ss_pred             CCCHHHEEECCCCCCCEECCCCCCCCH-HHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCC----CCC-HHHHHHHHHHHH
Q ss_conf             121110000247873011122211100-1332110221021-345565312332103455----589-556566789999
Q gi|255764461|r  324 ALRYFLVREIACGKDGFYDKDGLKKRV-NADLANGIGNLVS-RSVSMILKDYDGMIPTPG----AFT-ESDESILSVCSR  396 (511)
Q Consensus       324 ~lR~~l~~~~~~~~D~~Fs~~~~~~~~-n~~L~~~lgN~~~-R~~~f~~k~~~g~ip~~~----~~~-~~D~~ll~~l~~  396 (511)
T Consensus       427 Avry~~l~~-~~~~~~~Fd~d~~lsfegNt---~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~  502 (577)
T COG0018         427 AVRYADLSR-SRDKDYVFDWDKALSFEGNT---APYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLE  502 (577)
T ss_pred             HHHHHHHHC-CCCCCCEEEHHHHHHCCCCC---CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHH
T ss_conf             678998862-89999475399997445997---21599999999999985444345533222101068279999999998


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH
Q ss_conf             999999877503589999999999999978865418701216999
Q gi|255764461|r  397 VLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNP  441 (511)
Q Consensus       397 ~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~  441 (511)
T Consensus       503 fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~--Vl~~~~~  545 (577)
T COG0018         503 FPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP--VLGAENE  545 (577)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCH
T ss_conf             499999999856955999999999999999985087--7789957