HHsearch alignment for GI: 255764461 and conserved domain: COG0525
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=701.45 Aligned_cols=468 Identities=25% Similarity=0.393 Sum_probs=394.8
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----CCCCH-----------
Q ss_conf 817997888999988322247897899999999885898036236437022799999998----39998-----------
Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----AGVTT----------- 69 (511)
Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~g~~p----------- 69 (511)
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~ 112 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKK 112 (877)
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 97279689799888651165453789999999987079733357987778830899999999870988010589999999
Q ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC
Q ss_conf -999999999999999980889886747---7888899999999888754310221100010113343015566721112
Q gi|255764461|r 70 -KVFVDQNSRNFRDMADVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA 145 (511)
Q Consensus 70 -~e~~~~~~~~~~~~~~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~ 145 (511)
T Consensus 113 ~weWk~e~~~~I~~Q~~rLG~S~D-WsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e 191 (877)
T COG0525 113 CWEWKEESGGTIREQLRRLGVSVD-WSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKE 191 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 999999998999999998478735-5531126798899999999999997894651487434788633402044500011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (511)
T Consensus 192 ~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkI 271 (877)
T COG0525 192 VEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKI 271 (877)
T ss_pred CCEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCEEEE
T ss_conf 00368999975389986389981686301026699989987666863588896468897533534733477678741897
Q ss_pred -------------------------------------------------------------------CCCCCCCCCCCEE
Q ss_conf -------------------------------------------------------------------2222222332000
Q gi|255764461|r 146 -------------------------------------------------------------------DGQYYNAQHNPVQ 158 (511)
Q Consensus 146 -------------------------------------------------------------------~~~~~~~~~~p~~ 158 (511)
T Consensus 272 tpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IE 351 (877)
T COG0525 272 TPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIE 351 (877)
T ss_pred CCCCCCCHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEE
T ss_conf 16999406545301798720688899705467764458986999999999999968996766444541761167796020
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------------
Q ss_conf 03454434466644444344433332100067654577541034567532343337776578642---------------
Q gi|255764461|r 159 WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD--------------- 223 (511)
Q Consensus 159 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~--------------- 223 (511)
T Consensus 352 p~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~-i~DWcISRQl-wwGh~IPvWy~~~~g~v~v~~~~~ 429 (877)
T COG0525 352 PLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMEN-IRDWCISRQL-WWGHRIPVWYCKECGNVVVAEEEP 429 (877)
T ss_pred EEECCEEEEEHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCCEEEEEE-ECCCCCCEEEECCCCCEEECCCCC
T ss_conf 12324214870752699999874598468168899889999863-8376422211-317635159966998389678654
Q ss_pred ----------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH-HH-HH---H
Q ss_conf ----------------221464602444322001234676543100024110000456432100010247-76-54---3
Q gi|255764461|r 224 ----------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA-FL-LS---A 282 (511)
Q Consensus 224 ----------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa-~l-~~---~ 282 (511)
T Consensus 430 ~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~-t~~l~~fyPt~llvtG~DIIff----Wvarmi~~~~~~~ 504 (877)
T COG0525 430 EDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEE-TPDLKKFYPTDLLVTGHDIIFF----WVARMIMRGLHLT 504 (877)
T ss_pred CCHHHHCCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CHHHHHCCCCCEECCCCHHHHH----HHHHHHHHHHHHC
T ss_conf 3535424682202057852323324115646400689874-4477735887300355313389----9999999999865
Q ss_pred HHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 3101232333430330-586010000022111000000221112111000024787301112221110013321102210
Q gi|255764461|r 283 NLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNL 361 (511)
Q Consensus 283 ~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~ 361 (511)
T Consensus 505 ~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn--F~nKlWN- 581 (877)
T COG0525 505 GEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN--FLNKLWN- 581 (877)
T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHH-
T ss_conf 8999627898116786888887555788589799998848589999999536888665768899888999--9999874-
Q ss_pred CHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHH
Q ss_conf 213455653123321034---555895565667899999999998775035899999999999--999788654187012
Q gi|255764461|r 362 VSRSVSMILKDYDGMIPT---PGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWEL 436 (511)
Q Consensus 362 ~~R~~~f~~k~~~g~ip~---~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l 436 (511)
T Consensus 582 a~Rfv~~---~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~-~l 657 (877)
T COG0525 582 ATRFVLM---NLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKP-RL 657 (877)
T ss_pred HHHHHHH---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 9999985---2544576543322235488999999999999999999862378899999999699898999998214-40
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 16999999999999999999999985432248999999984988000795551
Q gi|255764461|r 437 KKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSL 489 (511)
Q Consensus 437 ~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~ 489 (511)
T Consensus 658 ~~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-~si~~~~~ 708 (877)
T COG0525 658 YGG-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-ESIHLASW 708 (877)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC-CEEEECCC
T ss_conf 285-7778999999999999999984887750157899865898-83784168