HHsearch alignment for GI: 255764461 and conserved domain: COG1384

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=99.71  E-value=4.8e-15  Score=130.30  Aligned_cols=256  Identities=21%  Similarity=0.284  Sum_probs=137.2

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CH-HH----H--HHHHH-CCC--------
Q ss_conf             81799788899998832224789789999999988589803623643702-27-99----9--99998-399--------
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH-GQ-KI----A--KAAQN-AGV--------   67 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h-g~-~i----~--~~A~~-~g~--------   67 (511)
T Consensus        19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP   97 (521)
T COG1384          19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP   97 (521)
T ss_pred             CCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             86898347-68988732142898989999999999748865799981487510127999998689998709964348997


Q ss_pred             --CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCCCH--HHHCC
Q ss_conf             --989999999999999999808898867477888--------------899999999888754310221100--01011
Q gi|255764461|r   68 --TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEK--------------RHHDTCRILWKKISDKGDIYKGCY--SGWYS  129 (511)
Q Consensus        68 --~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~--------------~~~~~~~~~~~~l~~~G~iy~~~~--~~~y~  129 (511)
T Consensus        98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~-s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~--~~~e~~~P~~piC  174 (521)
T COG1384          98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV-SATELYKSGLYDEAIRIALERRDEIMEILNEYRGR--ELEEDWSPFMPIC  174 (521)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEECCCCC
T ss_conf             66533599999999999998649864998-76775644558999999986579999999985187--6667723022256


Q ss_pred             CCCCCCCCHHHHCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             3343015566721112--22222223320000345443446664444434443333210006765457754103456753
Q gi|255764461|r  130 LRDEAYYNDDEVYKGA--DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDL  207 (511)
Q Consensus       130 ~~~~~~~~~~~v~~~~--~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw  207 (511)
T Consensus       175 ~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~-----------------------------v~ir~g~~KL~W--------  217 (521)
T COG1384         175 EKCGRILTTPVIEWDGEGTVEYRCECGHEGE-----------------------------VDIRGGEGKLPW--------  217 (521)
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCCCCE-----------------------------EECCCCCCCCCC--------
T ss_conf             5558703068899637844999866886104-----------------------------622336764435--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCC---HHHH-HHHHH-
Q ss_conf             234333777657864222146460244432200123467654310002411000045643210001---0247-76543-
Q gi|255764461|r  208 SLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAI---YWPA-FLLSA-  282 (511)
Q Consensus       208 ~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~pa-~l~~~-  282 (511)
T Consensus       218 -----RvdWp~R-----------W--------~~lg--------------Vd~EPfGKD----H~a~ggSydtg~~I~~e  255 (521)
T COG1384         218 -----RVDWPMR-----------W--------AALG--------------VDFEPFGKD----HAAAGGSYDTGKRIARE  255 (521)
T ss_pred             -----CCCCCCH-----------H--------HCCC--------------CCCCCCCCC----CCCCCCCHHHHHHHHHH
T ss_conf             -----7675001-----------0--------0008--------------310357853----13456763789999998


Q ss_pred             --HHHCCCCCCCCCCEEECC-CCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCC
Q ss_conf             --310123233343033058-601000002211100000022111211100002478730111222
Q gi|255764461|r  283 --NLPLPKKVFSHGFILHKG-EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDG  345 (511)
Q Consensus       283 --~~~~p~~i~~~g~l~~~G-~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~  345 (511)
T Consensus       256 i~g~~pP~~~~-YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r-~~~~d~~~  319 (521)
T COG1384         256 IFGYEPPVPFV-YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNR-HIDFDFDL  319 (521)
T ss_pred             HCCCCCCCCCC-EEEEEECCCCCCCCCCCCEECHHHHHHHCCHHHEEEEEEECCCCC-CEECCCCC
T ss_conf             64999997775-588985488665568785785999987539847332354058874-43317887