HHsearch alignment for GI: 255764461 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=99.71 E-value=4.8e-15 Score=130.30 Aligned_cols=256 Identities=21% Similarity=0.284 Sum_probs=137.2
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CH-HH----H--HHHHH-CCC--------
Q ss_conf 81799788899998832224789789999999988589803623643702-27-99----9--99998-399--------
Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH-GQ-KI----A--KAAQN-AGV-------- 67 (511)
Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h-g~-~i----~--~~A~~-~g~-------- 67 (511)
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 86898347-68988732142898989999999999748865799981487510127999998689998709964348997
Q ss_pred --CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCCCH--HHHCC
Q ss_conf --989999999999999999808898867477888--------------899999999888754310221100--01011
Q gi|255764461|r 68 --TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEK--------------RHHDTCRILWKKISDKGDIYKGCY--SGWYS 129 (511)
Q Consensus 68 --~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~--------------~~~~~~~~~~~~l~~~G~iy~~~~--~~~y~ 129 (511)
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~-s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~--~~~e~~~P~~piC 174 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV-SATELYKSGLYDEAIRIALERRDEIMEILNEYRGR--ELEEDWSPFMPIC 174 (521)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEECCCCC
T ss_conf 66533599999999999998649864998-76775644558999999986579999999985187--6667723022256
Q ss_pred CCCCCCCCHHHHCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 3343015566721112--22222223320000345443446664444434443333210006765457754103456753
Q gi|255764461|r 130 LRDEAYYNDDEVYKGA--DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDL 207 (511)
Q Consensus 130 ~~~~~~~~~~~v~~~~--~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw 207 (511)
T Consensus 175 ~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~-----------------------------v~ir~g~~KL~W-------- 217 (521)
T COG1384 175 EKCGRILTTPVIEWDGEGTVEYRCECGHEGE-----------------------------VDIRGGEGKLPW-------- 217 (521)
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCE-----------------------------EECCCCCCCCCC--------
T ss_conf 5558703068899637844999866886104-----------------------------622336764435--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCC---HHHH-HHHHH-
Q ss_conf 234333777657864222146460244432200123467654310002411000045643210001---0247-76543-
Q gi|255764461|r 208 SLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAI---YWPA-FLLSA- 282 (511)
Q Consensus 208 ~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~pa-~l~~~- 282 (511)
T Consensus 218 -----RvdWp~R-----------W--------~~lg--------------Vd~EPfGKD----H~a~ggSydtg~~I~~e 255 (521)
T COG1384 218 -----RVDWPMR-----------W--------AALG--------------VDFEPFGKD----HAAAGGSYDTGKRIARE 255 (521)
T ss_pred -----CCCCCCH-----------H--------HCCC--------------CCCCCCCCC----CCCCCCCHHHHHHHHHH
T ss_conf -----7675001-----------0--------0008--------------310357853----13456763789999998
Q ss_pred --HHHCCCCCCCCCCEEECC-CCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCC
Q ss_conf --310123233343033058-601000002211100000022111211100002478730111222
Q gi|255764461|r 283 --NLPLPKKVFSHGFILHKG-EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDG 345 (511)
Q Consensus 283 --~~~~p~~i~~~g~l~~~G-~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~ 345 (511)
T Consensus 256 i~g~~pP~~~~-YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r-~~~~d~~~ 319 (521)
T COG1384 256 IFGYEPPVPFV-YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNR-HIDFDFDL 319 (521)
T ss_pred HCCCCCCCCCC-EEEEEECCCCCCCCCCCCEECHHHHHHHCCHHHEEEEEEECCCCC-CEECCCCC
T ss_conf 64999997775-588985488665568785785999987539847332354058874-43317887