HHsearch alignment for GI: 255764461 and conserved domain: cd00395
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.72 E-value=0.017 Score=37.59 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEE-ECC-CCCCHHHCCCCC-CCCHHHHCCCCCCCHHHEEEC
Q ss_conf 1000045643210001024776543-310123233343033-058-601000002211-100000022111211100002
Q gi|255764461|r 258 ADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFIL-HKG-EKISKSLGNVID-PIEVIEEVGVDALRYFLVREI 333 (511)
Q Consensus 258 ~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~-~~G-~KMSKS~GN~I~-~~e~l~~~g~D~lR~~l~~~~ 333 (511)
T Consensus 142 ~~~v~~G~DQ~~~~~l~R-dia~k~~~~~~p~~l~-~~~l~~l~G~~KMSKS~~ns~i~l~D-----sp~~i~~KI~~a~ 214 (274)
T cd00395 142 ADLVPGGSDQDPHIELGR-DLARRFNGFKKPVALT-SPLLTGLDGGKKMSKSDGNAIIFLLD-----SPEEIYKKIMKAY 214 (274)
T ss_pred CCCCCCCCCHHHHHHHHH-HHHHHHCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCEEECCC-----CHHHHHHHHEECC
T ss_conf 654555611799999999-9999944999986872-37744689976745789984465469-----9999999872240