HHsearch alignment for GI: 255764461 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.96 E-value=3.6e-29 Score=234.69 Aligned_cols=189 Identities=26% Similarity=0.360 Sum_probs=149.7
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 88179978889999883222478978999999998858980362364---370227999999983999899999999999
Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG---TDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511)
Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g---~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511)
T Consensus 20 ~V~~Y~CGPTVY--d~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDD---KII~~A~~~~~~~~ela~~y~~~f 94 (213)
T cd00672 20 LVRMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDD---KIIKRAREEGLSIKEVAEYYTAEF 94 (213)
T ss_pred EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 788997899688--998765342576899999999963993589997267518---999999983999999999999999
Q ss_pred HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC
Q ss_conf 9999980889-886747788889999999988875431022110001011334301556672111222222223320000
Q gi|255764461|r 81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW 159 (511)
Q Consensus 81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~ 159 (511)
T Consensus 95 ~~d~~~Lni~~p~~~Pra-------------------------------------------------------------- 112 (213)
T cd00672 95 FEDMKALNVLPPDVYPRV-------------------------------------------------------------- 112 (213)
T ss_pred HHHHHHHCCCCCCCCCCE--------------------------------------------------------------
T ss_conf 999998289999813545--------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 34544344666444443444333321000676545775410345675323433377765786422214646024443220
Q gi|255764461|r 160 MEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYL 239 (511)
Q Consensus 160 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~ 239 (511)
T Consensus 113 -----------------------------------------------WHi---------EC-------------saM--- 120 (213)
T cd00672 113 -----------------------------------------------WHI---------EC-------------SAM--- 120 (213)
T ss_pred -----------------------------------------------EEE---------EC-------------HHH---
T ss_conf -----------------------------------------------201---------45-------------999---
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHH
Q ss_conf 0123467654310002411000045643210001024776543-310123233343033058601000002211100000
Q gi|255764461|r 240 TTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIE 318 (511)
Q Consensus 240 s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~ 318 (511)
T Consensus 121 -~~~~lg~---------~~DIH~GG~DL~FPHHeNE~AQs~a~~~~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~ 190 (213)
T cd00672 121 -SMKYLGE---------TFDIHGGGVDLIFPHHENEIAQSEAAFGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK 190 (213)
T ss_pred -HHHHHCC---------CEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHCCCEECCCCCCEEEHHHHHH
T ss_conf -8988289---------625634763565899704999988865899601000345787275640345787526999984
Q ss_pred HCCCCCCCHHHEEECCCCCCCEEC
Q ss_conf 022111211100002478730111
Q gi|255764461|r 319 EVGVDALRYFLVREIACGKDGFYD 342 (511)
Q Consensus 319 ~~g~D~lR~~l~~~~~~~~D~~Fs 342 (511)
T Consensus 191 ~~~~~~~R~~lls-~hYR~~l~fs 213 (213)
T cd00672 191 KYDPEVLRLALLS-SHYRSPLDYS 213 (213)
T ss_pred CCCHHHHHHHHHH-CCCCCCCCCC
T ss_conf 3999999999982-7378987899