HHsearch alignment for GI: 255764461 and conserved domain: cd00806

>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=96.79  E-value=0.0073  Score=40.27  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf             99883222478978999999998858980362364370227999999983999899999999999999998088988---
Q gi|255764461|r   16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD---   92 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D---   92 (511)
T Consensus         9 PTG~~HlG~~v~~~k---~~~~~~-~g~~~~i~iaD~-ha~--t~----~~~~~~~-~~~~~~~~~~~~lA~G~Dp~k~~   76 (282)
T cd00806           9 PSGSLHLGHYLGAIR---NWVLQQ-EGYELFFFIADL-HAL--TV----KQSDPEE-LRQNTRENAADYLACGLDPEKST   76 (282)
T ss_pred             CCCCCHHHHHHHHHH---HHHHHH-CCCCEEEEEECH-HHH--HC----CCCCHHH-HHHHHHHHHHHHHHCCCCHHHEE
T ss_conf             897147888999999---999997-899199998043-888--67----9999999-99999999999999198888908


Q ss_pred             CCCCCCCHHHHHH
Q ss_conf             6747788889999
Q gi|255764461|r   93 DFIRTTEKRHHDT  105 (511)
Q Consensus        93 ~~~rT~~~~~~~~  105 (511)
T Consensus        77 i~~qS~~~~~~el   89 (282)
T cd00806          77 IFFQSDVPEHYEL   89 (282)
T ss_pred             EEEECCCHHHHHH
T ss_conf             9983742789999