HHsearch alignment for GI: 255764461 and conserved domain: cd00806
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=96.79 E-value=0.0073 Score=40.27 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf 99883222478978999999998858980362364370227999999983999899999999999999998088988---
Q gi|255764461|r 16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD--- 92 (511)
Q Consensus 16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D--- 92 (511)
T Consensus 9 PTG~~HlG~~v~~~k---~~~~~~-~g~~~~i~iaD~-ha~--t~----~~~~~~~-~~~~~~~~~~~~lA~G~Dp~k~~ 76 (282)
T cd00806 9 PSGSLHLGHYLGAIR---NWVLQQ-EGYELFFFIADL-HAL--TV----KQSDPEE-LRQNTRENAADYLACGLDPEKST 76 (282)
T ss_pred CCCCCHHHHHHHHHH---HHHHHH-CCCCEEEEEECH-HHH--HC----CCCCHHH-HHHHHHHHHHHHHHCCCCHHHEE
T ss_conf 897147888999999---999997-899199998043-888--67----9999999-99999999999999198888908
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 6747788889999
Q gi|255764461|r 93 DFIRTTEKRHHDT 105 (511)
Q Consensus 93 ~~~rT~~~~~~~~ 105 (511)
T Consensus 77 i~~qS~~~~~~el 89 (282)
T cd00806 77 IFFQSDVPEHYEL 89 (282)
T ss_pred EEEECCCHHHHHH
T ss_conf 9983742789999