HHsearch alignment for GI: 255764461 and conserved domain: cd00818
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=606.37 Aligned_cols=304 Identities=27% Similarity=0.451 Sum_probs=265.6
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCH--------------
Q ss_conf 8179978889999883222478978999999998858980362364370227999999983-9998--------------
Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTT-------------- 69 (511)
Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p-------------- 69 (511)
T Consensus 1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf 95599589988578734558899999999999998069988778851440399999999964898730476559999999
Q ss_pred --HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC
Q ss_conf --99999999999999998088988--67477888899999999888754310221100010113343015566721112
Q gi|255764461|r 70 --KVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA 145 (511)
Q Consensus 70 --~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~ 145 (511)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~----------------- 143 (339)
T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW----------------- 143 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC-----------------
T ss_conf 999999999999999999837351477771216889999999999999988886267605368-----------------
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 22222223320000345443446664444434443333210006765-457754103456753234333777657864--
Q gi|255764461|r 146 DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIER-RNEVISFVKSGLKDLSLSRKTFDWGIKIPD-- 222 (511)
Q Consensus 146 ~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~-- 222 (511)
T Consensus 144 ----------p~~~~~~~~~F~~l~~~~~~ll~~~~~~-~~~-p~~~~~~~l~~~~~~-l~Dw~ISR~~-~WGipvP~w~ 209 (339)
T cd00818 144 ----------PLIYRATPQWFIRVEKLKDRLLEANDKV-NWI-PEWVKEGRFGNWLEN-RRDWCISRQR-YWGTPIPVWY 209 (339)
T ss_pred ----------CCCCEECCCEEEECHHHHHHHHHHHHCC-CEE-CCHHHHHHHHHHHHC-CCCCEEEECC-CCCCCCCEEE
T ss_conf ----------7600581567998689999999877538-737-861066499999716-8565044026-6675346356
Q ss_pred --CC--------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCC
Q ss_conf --22--------214646024443220012346765431000241100004564321--000102477654331012323
Q gi|255764461|r 223 --DP--------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKV 290 (511)
Q Consensus 223 --~~--------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i 290 (511)
T Consensus 210 ~~~~~~~~~~~~~dv~yVWfDa~~~~~~~~~~~~~-~~~~~~~~p~~~~~~GkDi~~~~f~~~~~~~~~~~-~~~P~~~v 287 (339)
T cd00818 210 SEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFE-NEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF-GKAPYKNV 287 (339)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCC-CHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCCCEE
T ss_conf 48998321003650177776356248987289864-31341387660566063312337999999878854-89985214
Q ss_pred CCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf 3343033-05860100000221110000002211121110000247873011
Q gi|255764461|r 291 FSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY 341 (511)
Q Consensus 291 ~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F 341 (511)
T Consensus 288 ~~hg~~l~~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F 339 (339)
T cd00818 288 IVHGFVLDEDGRKMSKSLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF 339 (339)
T ss_pred EECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 8898499999866278899878989999876947999999916888889999