HHsearch alignment for GI: 255764461 and conserved domain: cd00818

>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=606.37  Aligned_cols=304  Identities=27%  Similarity=0.451  Sum_probs=265.6

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCH--------------
Q ss_conf             8179978889999883222478978999999998858980362364370227999999983-9998--------------
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTT--------------   69 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p--------------   69 (511)
T Consensus         1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~   80 (339)
T cd00818           1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA   80 (339)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf             95599589988578734558899999999999998069988778851440399999999964898730476559999999


Q ss_pred             --HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC
Q ss_conf             --99999999999999998088988--67477888899999999888754310221100010113343015566721112
Q gi|255764461|r   70 --KVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA  145 (511)
Q Consensus        70 --~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~  145 (511)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~-----------------  143 (339)
T cd00818          81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW-----------------  143 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC-----------------
T ss_conf             999999999999999999837351477771216889999999999999988886267605368-----------------


Q ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             22222223320000345443446664444434443333210006765-457754103456753234333777657864--
Q gi|255764461|r  146 DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIER-RNEVISFVKSGLKDLSLSRKTFDWGIKIPD--  222 (511)
Q Consensus       146 ~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~--  222 (511)
T Consensus       144 ----------p~~~~~~~~~F~~l~~~~~~ll~~~~~~-~~~-p~~~~~~~l~~~~~~-l~Dw~ISR~~-~WGipvP~w~  209 (339)
T cd00818         144 ----------PLIYRATPQWFIRVEKLKDRLLEANDKV-NWI-PEWVKEGRFGNWLEN-RRDWCISRQR-YWGTPIPVWY  209 (339)
T ss_pred             ----------CCCCEECCCEEEECHHHHHHHHHHHHCC-CEE-CCHHHHHHHHHHHHC-CCCCEEEECC-CCCCCCCEEE
T ss_conf             ----------7600581567998689999999877538-737-861066499999716-8565044026-6675346356


Q ss_pred             --CC--------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCC
Q ss_conf             --22--------214646024443220012346765431000241100004564321--000102477654331012323
Q gi|255764461|r  223 --DP--------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKV  290 (511)
Q Consensus       223 --~~--------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i  290 (511)
T Consensus       210 ~~~~~~~~~~~~~dv~yVWfDa~~~~~~~~~~~~~-~~~~~~~~p~~~~~~GkDi~~~~f~~~~~~~~~~~-~~~P~~~v  287 (339)
T cd00818         210 SEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFE-NEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF-GKAPYKNV  287 (339)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCC-CHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCCCEE
T ss_conf             48998321003650177776356248987289864-31341387660566063312337999999878854-89985214


Q ss_pred             CCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             3343033-05860100000221110000002211121110000247873011
Q gi|255764461|r  291 FSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       291 ~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
T Consensus       288 ~~hg~~l~~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F  339 (339)
T cd00818         288 IVHGFVLDEDGRKMSKSLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF  339 (339)
T ss_pred             EECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             8898499999866278899878989999876947999999916888889999