HHsearch alignment for GI: 255764461 and conserved domain: cd07957
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.93 E-value=4.8e-25 Score=204.19 Aligned_cols=128 Identities=41% Similarity=0.774 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01332110221021345565312332103455589556566789999999999877503589999999999999978865
Q gi|255764461|r 350 VNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFD 429 (511)
Q Consensus 350 ~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~ 429 (511)
T Consensus 1 ~N~~L~~~~GNLv~Rv~~~~~k~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~ 80 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYID 80 (129)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98888879977999999999982799799987776413999999999999999999852499999999999999999999
Q ss_pred HHCCCHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 4187012169-99999999999999999999985432248999999984
Q gi|255764461|r 430 AQKPWELKKT-NPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477 (511)
Q Consensus 430 ~~~PW~l~k~-d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L 477 (511)
T Consensus 81 ~~~PW~l~K~~~~~~~~~vl~~~l~~~~~l~ilL~P~mP~~s~~i~~~L 129 (129)
T cd07957 81 ETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 6587988823029999999999999999999999757018999999719