HHsearch alignment for GI: 255764461 and conserved domain: cd07959
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.30 E-value=3.5e-11 Score=101.76 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=75.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHCCCHHHCCCHH
Q ss_conf 345565312332103455589556566789999999999877503589999999-9999999788654187012169999
Q gi|255764461|r 364 RSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQV-ISLVSEVDRYFDAQKPWELKKTNPD 442 (511)
Q Consensus 364 R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i-~~l~~~~N~yi~~~~PW~l~k~d~~ 442 (511)
T Consensus 15 ~~~~~~~e~~~~~-~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~~~Y~~~~~------~~-- 85 (117)
T cd07959 15 RFYELAEELIETE-GELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGG------AG-- 85 (117)
T ss_pred HHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CC--
T ss_conf 9999999998625-77888977689999999999999999999878878999999999999999999845------54--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 99999999999999999985432248999999984
Q gi|255764461|r 443 RASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477 (511)
Q Consensus 443 ~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L 477 (511)
T Consensus 86 ~~~~~l---~~~l~~~~~lLaP~~PhiaEEiW~~l 117 (117)
T cd07959 86 MNKDLL---RRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 149999---99999999998473348699998639