HHsearch alignment for GI: 255764461 and conserved domain: cd07960

>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.56  E-value=3.5e-14  Score=123.95  Aligned_cols=135  Identities=19%  Similarity=0.258  Sum_probs=98.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHH
Q ss_conf             332110221021345565312332103-----4555895565667899999999998775035899999999999--999
Q gi|255764461|r  352 ADLANGIGNLVSRSVSMILKDYDGMIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEV  424 (511)
Q Consensus       352 ~~L~~~lgN~~~R~~~f~~k~~~g~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~  424 (511)
T Consensus        10 ~e~~rKiwN----t~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~ls   85 (180)
T cd07960          10 AEAYRKIRN----TFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLS   85 (180)
T ss_pred             HHHHHHHHH----HHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf             999999999----9999998637999433458922287989999999999999999999838999999999999402103


Q ss_pred             HHHHHHHCCCHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCC
Q ss_conf             78865418701216--999999999999999999999985432248999999984988--00079555101
Q gi|255764461|r  425 DRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQ  491 (511)
Q Consensus       425 N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~  491 (511)
T Consensus        86 ~~Yle~~K~-rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~  155 (180)
T cd07960          86 AFYLDIIKD-RLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPE  155 (180)
T ss_pred             HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf             599999779-7615888838999999999999999898744000453999998756689999757148999