HHsearch alignment for GI: 255764461 and conserved domain: cd07960
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.56 E-value=3.5e-14 Score=123.95 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=98.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHH
Q ss_conf 332110221021345565312332103-----4555895565667899999999998775035899999999999--999
Q gi|255764461|r 352 ADLANGIGNLVSRSVSMILKDYDGMIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEV 424 (511)
Q Consensus 352 ~~L~~~lgN~~~R~~~f~~k~~~g~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~ 424 (511)
T Consensus 10 ~e~~rKiwN----t~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~ls 85 (180)
T cd07960 10 AEAYRKIRN----TFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLS 85 (180)
T ss_pred HHHHHHHHH----HHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 999999999----9999998637999433458922287989999999999999999999838999999999999402103
Q ss_pred HHHHHHHCCCHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCC
Q ss_conf 78865418701216--999999999999999999999985432248999999984988--00079555101
Q gi|255764461|r 425 DRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQ 491 (511)
Q Consensus 425 N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~ 491 (511)
T Consensus 86 ~~Yle~~K~-rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~ 155 (180)
T cd07960 86 AFYLDIIKD-RLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPE 155 (180)
T ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf 599999779-7615888838999999999999999898744000453999998756689999757148999