RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(511 letters)
>gnl|CDD|183364 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 725 bits (1875), Expect = 0.0
Identities = 277/512 (54%), Positives = 367/512 (71%), Gaps = 10/512 (1%)
Query: 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN 64
+K YI+T I YPN +PHIGHAY + ADVLARF RL G DV F TGTDEHGQKI + A+
Sbjct: 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE 60
Query: 65 AGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCY 124
AG++ + D+NS F+ + + L+ISYDDFIRTT+ RH + + +++++ GDIY G Y
Sbjct: 61 AGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKY 120
Query: 125 SGWYSLRDEAYYNDDEVYKGADGQYYNAQHN-PVQWMEEEGYFFRLSAYQDKLLSYYESH 183
GWY +R E +Y + E+ + Y PV+W+EEE YFFRLS YQDKLL YE++
Sbjct: 121 EGWYCVRCEEFYTESEL---IEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEAN 177
Query: 184 PEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTG 243
P+FI P RRNEVISFVKSGLKDLS+SR FDWGI +P DP++++YVW DALTNYLT G
Sbjct: 178 PDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALG 237
Query: 244 YLDNP---DGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKG 300
Y D+ K+WPAD+H+IGKDILRFHA+YWPAFL++A LPLPK+VF+HGF+ G
Sbjct: 238 YPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDG 297
Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
EK+SKSLGNVIDP ++++E GVDA+RYFL+REI G+DG + ++ R+NADLAN +GN
Sbjct: 298 EKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGN 357
Query: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
L R++SMI K++DG +P PGA TE+DE++L + +L+ +R M N +AL +++L
Sbjct: 358 LAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILAL 417
Query: 421 VSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL-FV 479
V ++Y D Q PW L KT+P+R +TVLY +EV+R +A+LLQ +P+LA KI D L
Sbjct: 418 VRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE 477
Query: 480 ADENRCFQSL-DQRLKPGFMLHKTFDPIFPRF 510
DENR F +L RL PG L K +PIFPR
Sbjct: 478 EDENRDFAALSWGRLAPGTTLPKP-EPIFPRL 508
>gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 681 bits (1759), Expect = 0.0
Identities = 246/513 (47%), Positives = 351/513 (68%), Gaps = 9/513 (1%)
Query: 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
++ YI+T I YPN +PHIGHAY I AD LAR+ RL G DV F TGTDEHGQKI +A
Sbjct: 1 MMKKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQA 60
Query: 62 AQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYK 121
A+ AG T + +VD+ S F+++ LDISYD FIRTT++RH + +++K+ ++GDIYK
Sbjct: 61 AEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120
Query: 122 GCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYE 181
G Y GWY + E ++ + ++ DG V+ ++EE YFFR+S YQD+LL YYE
Sbjct: 121 GEYEGWYCVSCETFFTESQL---VDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYE 177
Query: 182 SHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT 240
+P+FI P R+NE+I +F+K GL+DLS+SR +FDWGI +P DP++++YVWIDAL NY+T
Sbjct: 178 ENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYIT 237
Query: 241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKG 300
GY + D KFWPAD+H++GKDILRFHAIYWP L++ LPLPKKVF+HG+ L K
Sbjct: 238 ALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKD 297
Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
K+SKS GNV+DP E+++ G+DALRY+L+RE+ G DG + + L +R+N+DLAN +GN
Sbjct: 298 GKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGN 357
Query: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
L++R+V+MI K +DG IP PG TE DE ++++ L+ E M+ RAL +V L
Sbjct: 358 LLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKL 417
Query: 421 VSEVDRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILF 478
+S ++Y D PW L K +R +TV+Y E +R++A+LL F+P+ + KIF+ L
Sbjct: 418 ISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLG 477
Query: 479 VADENRCFQSLDQ--RLKPGFMLHKTFDPIFPR 509
+ +E ++SL + L G + K +P+FPR
Sbjct: 478 LEEELTSWESLLEWGGLPAGTKVAKG-EPLFPR 509
>gnl|CDD|161858 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
this model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain.
Length = 530
Score = 488 bits (1258), Expect = e-138
Identities = 198/533 (37%), Positives = 300/533 (56%), Gaps = 37/533 (6%)
Query: 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV 67
I+TA+ Y N +PH+GHAY I+ADV AR+ RL G +VLF GTDEHG KI A+ G+
Sbjct: 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGL 61
Query: 68 TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGW 127
T K VD+ F+D L+IS+D FIRTT++ H + + +++K+ + G IY+
Sbjct: 62 TPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQL 121
Query: 128 YSLRDEAYYNDDEV-----YKGADGQYYNAQHN------PVQ--------------WMEE 162
Y E + D V G++ + P + +
Sbjct: 122 YCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDS 181
Query: 163 EGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIP 221
E YFFRLSA++ +L + +PE P +++K GLKDL+++R WGI +P
Sbjct: 182 EHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVP 241
Query: 222 DDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWP 276
+DP ++YVW DAL Y+++ G L K+W D +H IGKDI+RFH IYWP
Sbjct: 242 NDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWP 301
Query: 277 AFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACG 336
A L+ LPLP +VFSHG++ +G K+SKSLGNV+DP +++ G D LRY+L++E G
Sbjct: 302 AMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLG 361
Query: 337 KDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSR 396
KDG + + +RVNADLAN +GNL++R++ I K ++G++P+ E D+ +L + +
Sbjct: 362 KDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINE 421
Query: 397 VLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIR 456
L++I E +++ +AL +++ L ++Y D KPWEL K +P R +L V +IR
Sbjct: 422 ALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSP-RLKELLAVCSMLIR 480
Query: 457 QLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHKTFDPIFPR 509
L+ILL +PKL+ KI L E L + G L+K +P+F +
Sbjct: 481 VLSILLYPIMPKLSEKILKFLNFELEWDFKLKLLE----GHKLNK-AEPLFSK 528
>gnl|CDD|117876 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 460 bits (1187), Expect = e-130
Identities = 182/390 (46%), Positives = 243/390 (62%), Gaps = 34/390 (8%)
Query: 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV 67
I+TA+ Y N PHIGH Y I ADV AR+ RL G DVLF TGTDEHG KI AA+ GV
Sbjct: 2 LITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEGV 61
Query: 68 TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGW 127
T + VD+ F+++ +IS+DDFIRTT +RH + + + K+ +KGDIY+G Y GW
Sbjct: 62 TPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGW 121
Query: 128 YSLRDEAYYNDDEV--------YKGADG-QYYNAQH--------NPV-------QWM-EE 162
Y + DE + D V + A G Q NP + EE
Sbjct: 122 YCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPELKEE 181
Query: 163 EGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIP 221
E YFFRLS +QDKLL + + +P+ P NEV+ S++K GLKDLS++R DWGI +P
Sbjct: 182 EHYFFRLSKFQDKLLEWIKENPD--EPPSNVNEVVLSWLKEGLKDLSITR-DLDWGIPVP 238
Query: 222 DDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWP 276
DP ++YVW DAL Y++ T YL KFW D +H IGKDI+RFHAIYWP
Sbjct: 239 GDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHAIYWP 298
Query: 277 AFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACG 336
A L++A LPLP +VF+HG++ +G K+SKS GNV+DP E+++ GVDALRY+L RE G
Sbjct: 299 AMLMAAGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEG 358
Query: 337 KDGFYDKDGLKKRVNADLANGIGNLVSRSV 366
KDG + + +RVN++LAN +GNLV+R++
Sbjct: 359 KDGDFSWEDFVERVNSELANDLGNLVNRTL 388
>gnl|CDD|183390 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 433 bits (1115), Expect = e-122
Identities = 172/545 (31%), Positives = 275/545 (50%), Gaps = 46/545 (8%)
Query: 4 REKLYISTAIAYPNAQPHIGHAYE-MIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA 62
++ I++A Y N H+GH + ADV AR+ RL G +VLF +G+DEHG I AA
Sbjct: 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA 61
Query: 63 QNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG 122
+ GVT + D+ ++ L ISYD F RTT HH+ + + K+ + G IYK
Sbjct: 62 KKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKK 121
Query: 123 CYSGWYSLRDEAYYNDDEV-----YKGADGQYYN------AQHNPVQ------------- 158
Y D + D V Y G +G + A +P
Sbjct: 122 TIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTP 181
Query: 159 -WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWG 217
+ E E +F L A+ ++L ++ ES P N ++++K GLK +++R DWG
Sbjct: 182 EFRETEHFFLDLPAFAERLRAWIES--SGDWPPNVLNFTLNWLKEGLKPRAITR-DLDWG 238
Query: 218 IKIP--DDPQYIMYVWIDALTNYLTTTGYL----DNPDGSKAKFWP----ADLHVIGKDI 267
I +P + YVW DA+ Y++ + +P+ K +FW + IGKD
Sbjct: 239 IPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWK-EFWLDPETKSYYFIGKDN 297
Query: 268 LRFHAIYWPAFLLSAN--LPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDAL 325
+ FH+I WPA LL + L LP ++ S ++ +G K SKS G I + +E D L
Sbjct: 298 IPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYL 357
Query: 326 RYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTE 385
RY+L D + + +RVN++LA+ GNLV+R +S I K + G I PG +
Sbjct: 358 RYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGG-IVPPGELGD 416
Query: 386 SDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRAS 445
D +++ + +E+ E ++ +AL +++ L E ++Y D + PW+L KT+ +RA+
Sbjct: 417 EDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAA 476
Query: 446 TVLYVTVEVIRQLAILLQAFVPKLANKIFDIL-FVADENRCFQSLDQRLKPGFMLHKTFD 504
TVLY + ++R LA+LL F+P A KI+++L E ++SL L PG ++K +
Sbjct: 477 TVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWESLK-PLLPGHPINK-PE 534
Query: 505 PIFPR 509
P+F +
Sbjct: 535 PLFKK 539
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 359 bits (921), Expect = 1e-99
Identities = 195/517 (37%), Positives = 291/517 (56%), Gaps = 14/517 (2%)
Query: 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA 62
E + ++T + Y NA PH+G AY I AD +ARF RL G V+F TGTDEHG+KIA +A
Sbjct: 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA 126
Query: 63 QNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG 122
G D S+++R + LDI+YD FIRTT+ +H + + ++ GDIY+
Sbjct: 127 AANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRA 186
Query: 123 CYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYES 182
Y G Y + E Y ++ E+ + P +E+ YFF LS YQ L
Sbjct: 187 DYEGLYCVNCEEYKDEKELL---ENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQ 243
Query: 183 HPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNY---L 239
+P F+ P R NEV S++KSGL+D S+SR DWGI +PDD + +YVW DAL Y L
Sbjct: 244 NPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISAL 303
Query: 240 TTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHK 299
T N + + + WPA LH+IGKDILRFHA+YWPA L+SA L LPK VF HGF+
Sbjct: 304 TEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKD 363
Query: 300 GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIG 359
G K+ KSLGN ++P E++++ G DA+RYF +RE+ G DG Y +D K VNA LAN IG
Sbjct: 364 GMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423
Query: 360 NLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVIS 419
NL++R++ ++ K+ + + + +++++ + N +N + A V+
Sbjct: 424 NLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLE 483
Query: 420 LVSEVDRYFDAQKPWELKK---TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDI 476
+ + + Y D + PW L K + + A+ L + +EV+R +A+ L P L+ +I+
Sbjct: 484 IGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQ 543
Query: 477 L-FVADENRCFQSLDQR---LKPGFMLHKTFDPIFPR 509
L + D+ D + LK G ++ + P+F R
Sbjct: 544 LGYSEDQFNSITWSDTKWGGLKGGQVMEQA-SPVFAR 579
>gnl|CDD|178889 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 236 bits (605), Expect = 1e-62
Identities = 100/331 (30%), Positives = 164/331 (49%), Gaps = 26/331 (7%)
Query: 161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDW-GIK 219
E E +FF+L +++ L + E L N++ +++ GL+D +SR + G +
Sbjct: 183 ESEHFFFKLPRFEEFLKEWITRSGE--LQPNVANKMKEWLEEGLQDWDISR-DAPYFGFE 239
Query: 220 IPDDPQYIMYVWIDALTNYLTTT-GYLDNPDGSK-AKFWPAD-----LHVIGKDILRFHA 272
IP P + YVW+DA Y+++T D G ++W D H IGKDI+ FH
Sbjct: 240 IPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHT 299
Query: 273 IYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVRE 332
++WPA L A LP VF+HGF+ +G K+SKS G I ++ + D LRY+L
Sbjct: 300 LFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLA-- 357
Query: 333 IACGKDGFYDKD------GLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTES 386
K D ++RVN++L + N SR+ I K +DG +P +
Sbjct: 358 ---AKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPD----ALA 410
Query: 387 DESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRAST 446
D +L ++I E + + +AL ++++L ++Y D +PW+L K + +R
Sbjct: 411 DPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQA 470
Query: 447 VLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
V V + + R LAI L+ +P+LA + L
Sbjct: 471 VCSVGLNLFRALAIYLKPVLPELAERAEAFL 501
Score = 95.2 bits (238), Expect = 4e-20
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA 65
K+ ++ A+ Y N H+GH E I AD+ R+ R+ G +VLF D HG I A+
Sbjct: 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE 62
Query: 66 GVTTKVFVD----QNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYK 121
G+T + + ++ R+F IS+D++ T + + + + ++ K+ + G IY+
Sbjct: 63 GITPEELIARYHAEHKRDFAGF----GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118
>gnl|CDD|178220 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 141 bits (357), Expect = 4e-34
Identities = 133/530 (25%), Positives = 237/530 (44%), Gaps = 77/530 (14%)
Query: 4 REKLYISTAIAYPNAQPHIGHAYEMII-----ADVLARFHRLDGLDVLFTTGTDEHGQKI 58
+ + I++A+ Y N PH+G+ II ADV AR+ RL G + ++ GTDE+G
Sbjct: 16 KRNILITSALPYVNNVPHLGN----IIGCVLSADVFARYCRLRGYNAIYICGTDEYGTAT 71
Query: 59 AKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGD 118
A T K D+ +++ D DIS+D F RT+ + + C+ ++KK+ +
Sbjct: 72 ETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNW 131
Query: 119 IYKGCYSGWYSLRDEAYYNDDEV----------YKGADG-QYYNAQH--NPVQWM----- 160
+ + Y + + D V Y A G Q NP + +
Sbjct: 132 LSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCK 191
Query: 161 ---------EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI---SFVKSGLKDLS 208
+ + F L +DKL+ Y + +N + ++++ GLK
Sbjct: 192 VCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRC 249
Query: 209 LSRKTFDWGIKIPDDPQY---IMYVWIDALTNYLT-TTGYLDNPDGSKAKFW--PADLHV 262
++R WG+ +P +Y + YVW DA Y++ T Y P+ K +W P ++ +
Sbjct: 250 ITRD-LKWGVPVPL-EKYKDKVFYVWFDAPIGYVSITACY--TPEWEK--WWKNPENVEL 303
Query: 263 ---IGKDILRFHAIYWPAFLL--SANLPLPKKVFSHGFILHKGEKISKS-----LGNVID 312
+GKD + FH + +P+ LL N + K + ++ ++G K SKS GN
Sbjct: 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAK 363
Query: 313 PIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKD 372
+ EV RY+L+ D + L+ ++N++L N +GN ++R +S I K
Sbjct: 364 DTNIPVEV----WRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKP 419
Query: 373 ----YDGMIP-TPGAFTESDESILSVCSRV---LQEIRENMQNQLIHRALAQVISLVSEV 424
Y +IP PGA ES + +V +++ E M+ + + L +S+ SE
Sbjct: 420 PGAGYGSVIPDAPGA--ESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEG 477
Query: 425 DRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIF 474
+ Y + W+L K + + V+ +V ++ LA LL+ F+P + ++
Sbjct: 478 NAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVL 527
>gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase.
Length = 861
Score = 113 bits (285), Expect = 1e-25
Identities = 93/376 (24%), Positives = 156/376 (41%), Gaps = 54/376 (14%)
Query: 154 HNPVQWMEEEGYFFRLSAYQDKLL-SYYESHPEFILPIERRNEVISFVKSGLKDLSLSRK 212
V+ + + +F ++ DK L + E +F+ P ++++++ +KD +SR+
Sbjct: 347 GTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFV-PKRMEKRYLNWLRN-IKDWCISRQ 404
Query: 213 TFDWGIKIP-------------------DDPQYIMYV------------WIDALTNYLTT 241
WG +IP DD W + +T
Sbjct: 405 LI-WGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFST 463
Query: 242 TGYLDNPDGSKAKFWPADLHVIGKDILRFHAIY--WPAFLLSANLPLPKKVFSHGFIL-H 298
G+ D K KF+P DL V G DI+ F + + L+ +P K+V+ HG +
Sbjct: 464 LGWPDETKDLK-KFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPF-KEVYIHGLVRDE 521
Query: 299 KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGI 358
+G K+SKSLGNVIDP++VIE+ G DALR+ L + G D +D ++ + N +
Sbjct: 522 QGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVES--ARNFLNKL 579
Query: 359 GNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVI 418
N SR V M L D + + +D ILS +R ++E+R+ + A+
Sbjct: 580 WN-ASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDK----YRFAEAA 634
Query: 419 SLVSE------VDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANK 472
+ E D Y + K L N V+ + LL F+P + +
Sbjct: 635 KALYEFIWNDFCDWYIELVKY-RLYNGNEAEKKAARDTLYYVLDKALRLLHPFMPFITEE 693
Query: 473 IFDILFVADENRCFQS 488
I+ ++ QS
Sbjct: 694 IWQHFKEGADSIMLQS 709
Score = 53.5 bits (129), Expect = 1e-07
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIA---KAAQNAGVTTKV 71
HIGHA I D++AR+ R+ G +VL+ GTD G IA K + G K
Sbjct: 43 NVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAG--IATQVKVEKKLGAEGKT 100
Query: 72 FVDQNSRNFRDMADVLDISYDDFIRTTEKR 101
D FR+ I+ KR
Sbjct: 101 KHDLGREEFREKIWEWKEESGGTIKNQIKR 130
>gnl|CDD|180364 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 90.6 bits (226), Expect = 1e-18
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 24/211 (11%)
Query: 288 KKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGL 346
K V HG +L G+K+SKSLGN +DP EV ++ G DALR++L+ A +D + +DG+
Sbjct: 577 KNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGV 636
Query: 347 KKRVNADLANGIGNLVSRSVS-MILKDYDGMIPTP--GAFTESDESILSVCSRVLQEIRE 403
++ V L + N+ S V L +D + E D ILS + +++E+ E
Sbjct: 637 REVVRKFL-LTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTE 695
Query: 404 NMQNQLIHRALAQVISLVSEV---------DRYFDAQKPWELKKTNPDRAS-TVLYVTVE 453
+ N I +A + V ++ R+ W+ + A+ LY
Sbjct: 696 ALDNYDITKAARAIRDFVDDLSNWYIRRSRRRF------WKEEDDPDKLAAYATLY---T 746
Query: 454 VIRQLAILLQAFVPKLANKIFDILFVADENR 484
V+ L+ L F P +A +I+ L D
Sbjct: 747 VLETLSRLAAPFTPFIAEEIYQNLTREDAPE 777
Score = 40.5 bits (96), Expect = 0.001
Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 39/148 (26%)
Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTTK--- 70
N PH GH I DV+ R+ + G V G D HG + + G++ K
Sbjct: 51 TANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDI 110
Query: 71 ---------------VF--VDQNSRNFRDMADVLD-----ISYD-DFIRTTEKRHHDTCR 107
V D+ + +D + D +++ +
Sbjct: 111 EEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMES---------- 160
Query: 108 ILW--KKISDKGDIYKGCYSGWYSLRDE 133
+ W K++ DKG +YKG Y R E
Sbjct: 161 VWWALKQLYDKGLLYKGYRVVPYCPRCE 188
>gnl|CDD|161854 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms.
Length = 861
Score = 87.4 bits (217), Expect = 8e-18
Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 23/294 (7%)
Query: 218 IKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYW 275
++PD ++ VW D+ + + Y + + +PAD + G D R F++
Sbjct: 530 RRVPD----VLDVWFDSGSMPYASIHYPFENE-KFKEVFPADFILEGSDQTRGWFYSSLA 584
Query: 276 PAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIA 334
L P K V +HGF L KG K+SKSLGNV+DP++VI + G D LR ++
Sbjct: 585 IGTALFGQAPY-KNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-D 642
Query: 335 CGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS-MILKDYDGM--IPTPGAFTESDESIL 391
+D + + L K+V N ++ L +D + F E D IL
Sbjct: 643 PWEDLRFSDEIL-KQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWIL 701
Query: 392 SVCSRVLQEIRENMQNQLIHRALAQVISLVSEV--DRYFDAQKP--WELKKTNPDRAS-T 446
S + +++E+ E ++ H+ L + + E + Y + + K N RA+ T
Sbjct: 702 SRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQT 761
Query: 447 VLYVTVEVIRQLAILLQAFVPKLANKIF-DILFVADENRCFQSLDQRLKPGFML 499
LY + L LL F+P A +I+ ++ +E +L + F+
Sbjct: 762 TLY---YALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFID 812
Score = 42.4 bits (100), Expect = 3e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIA-KAAQNAGVTTK 70
Y N H+GHA I+ D++ R+ + G +V G D HG I K + G++ K
Sbjct: 46 YANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGK 102
>gnl|CDD|180225 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 85.5 bits (213), Expect = 3e-17
Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 48/247 (19%)
Query: 245 LDNPDGSK--AKFWPADLHVIGKDILRFHAIYWPA--------------FLLSANLPLPK 288
L P+ ++ +F+P + V G DI+ F W A F K
Sbjct: 459 LGWPEKTEDLKRFYPTSVLVTGFDIIFF----WVARMIMMGLHFTGQVPF---------K 505
Query: 289 KVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLK 347
V+ HG + +G K+SKS GNVIDP+++I++ G DALR+ L + G+D +D++
Sbjct: 506 DVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEE--- 562
Query: 348 KRVNA--DLANGIGNLVSRSVSM-ILKDYDGMIPTPGAFTESDESILSVCSRVLQEIREN 404
RV + AN + N SR V M + G +P P + +D ILS +R + E+ E
Sbjct: 563 -RVEGYRNFANKLWN-ASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEA 620
Query: 405 MQNQLIHRALAQVISLVSEVDRYFDAQKPW--ELKKT--NPDRASTVLYVTVEVIRQLAI 460
+ A + + + + D W EL K V+ Q+
Sbjct: 621 LDKYRFDEAARALYEFI--WNEFCD----WYLELAKPVLQEAAKRATRATLAYVLEQILR 674
Query: 461 LLQAFVP 467
LL F+P
Sbjct: 675 LLHPFMP 681
Score = 45.5 bits (109), Expect = 4e-05
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52
H+GHA + D+L R+ R+ G + L+ GTD
Sbjct: 52 HMGHALNNTLQDILIRYKRMQGYNTLWLPGTD 83
>gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 80.2 bits (199), Expect = 1e-15
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 227 IMYVWID-ALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIY--WPAFLLSAN 283
+M W ++T L TG+ + D + F P DL G DI+R Y A+LL+
Sbjct: 457 VMDTWATSSIT-PLIVTGWERDEDLFEKVF-PMDLRPQGHDIIRTWLFYTILRAYLLTGK 514
Query: 284 LPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYD 342
LP K + G +L G+K+SKS GNV+ P E++E+ G DA+RY+ G D +D
Sbjct: 515 LPW-KNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFD 572
Query: 343 KDGLK--KRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQE 400
+ +K +R L + N SR V D + D IL+ ++V+++
Sbjct: 573 EKQVKIGRR----LLTKLWN-ASRFVLHFSADPE--PDKAEVLEPLDRWILAKLAKVVEK 625
Query: 401 IRENMQNQLIHRAL 414
E ++N +AL
Sbjct: 626 ATEALENYDFAKAL 639
Score = 50.2 bits (121), Expect = 1e-06
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 3 EREKLY-ISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
ER+ +Y I T + HIGH + D +AR+ R+ G +V F G D++G +
Sbjct: 35 ERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERK 94
Query: 62 AQNAGVTTKVFVDQNSR-NFRDM 83
+ + D SR F ++
Sbjct: 95 VEK---YYGIRKDDISREEFIEL 114
>gnl|CDD|184893 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 73.9 bits (181), Expect = 1e-13
Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 25/252 (9%)
Query: 239 LTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILH 298
+T G+ + D + F+P + G DI+ F W A ++ L +V LH
Sbjct: 474 FSTMGWPEQTDTLRT-FYPTSVMETGHDIIFF----WVARMMMMGLHFMGEVPFRTVYLH 528
Query: 299 ------KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKD---GLKKR 349
KG+K+SK+ GNVIDP+ + E+ G DALR+ L A G+D K+ G +
Sbjct: 529 PMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRA- 587
Query: 350 VNADLANGIGNLVSRSVSMILKDY--DGMIPTPGAFTESDESILSVCSRVLQEIRENMQN 407
AN + N SR M L Y G P A T +D IL+ R + E E ++
Sbjct: 588 ----FANKLWN-ASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEA 642
Query: 408 QLIHRALAQVISLV-SEV-DRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAF 465
+ A V + V E+ D Y + K L +P+ +V V V ++ LL F
Sbjct: 643 FRFNDAANAVYAFVWHELCDWYIELAKE-ALASEDPEARRSVQAVLVHCLQTSYRLLHPF 701
Query: 466 VPKLANKIFDIL 477
+P + +++ +L
Sbjct: 702 MPFITEELWHVL 713
Score = 39.2 bits (91), Expect = 0.003
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSR 78
H+GHA + DVL R+ R+ G + L+ GTD +AG+ T++ V++ +
Sbjct: 64 HLGHALTATLQDVLIRWKRMSGFNTLWLPGTD-----------HAGIATQMIVEKELK 110
>gnl|CDD|184337 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 66.9 bits (164), Expect = 1e-11
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 34/115 (29%)
Query: 227 IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKD--------------ILRFHA 272
I+ VW D+ + + L++ K WPADL++ G D R A
Sbjct: 559 ILDVWFDSGSTH---AFVLEDRPDLK---WPADLYLEGSDQHRGWFNSSLLESCGTRGRA 612
Query: 273 IYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALR 326
Y K V +HGF L KGEK+SKSLGN + P +VI++ G D LR
Sbjct: 613 PY-------------KAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILR 654
Score = 41.9 bits (99), Expect = 4e-04
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHG----QKIAKAAQNAGV 67
Y N HIGHA I+ DV+ R ++ G D + G D HG KI + + G
Sbjct: 64 YANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGK 120
>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches.
Length = 842
Score = 65.9 bits (161), Expect = 2e-11
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Query: 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
+ K YI YP+ H+GH I DVL+R++R+ G +VL G D G A
Sbjct: 26 SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENA 85
Query: 62 AQNAGVTTKVFVDQNSRNFRDMADVL--DISYDDFIRTTEKRHHDTCRILWKKISDKGDI 119
A G+ + +N N + L +D I T + ++ + ++ ++ +KG
Sbjct: 86 AIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLA 145
Query: 120 YKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLL 177
Y + D +++V +DG+ + PV+ E + +F +++AY ++LL
Sbjct: 146 YVKEADVNWCPNDGTVLANEQVD--SDGRSWRGGT-PVEKKELKQWFLKITAYAEELL 200
Score = 46.3 bits (110), Expect = 2e-05
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 51/149 (34%)
Query: 228 MYVWIDALTNYLTTTGYLD--NP----DGSKAKFW-PADLHVIGKDILRFHAIY---WPA 277
M + + YL YLD N D KA++W P DL++ G + H +Y W
Sbjct: 487 MDTFAGSSWYYL---RYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHK 543
Query: 278 FLLSANL-----PLPKKVFSHGFIL--------------------------------HKG 300
FL P KK+ + G +L
Sbjct: 544 FLYDIGYVSTKEPF-KKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGY 602
Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFL 329
EK+SKS GN IDP E++++ G DALR ++
Sbjct: 603 EKMSKSKGNGIDPQEIVKKHGADALRLYI 631
>gnl|CDD|180231 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 64.0 bits (157), Expect = 1e-10
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 42/136 (30%)
Query: 214 FDWGIK--IPDDP-QY-----IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGK 265
F+ K +PD+ +Y I+ VW D+ + + L+ +PADL++ G
Sbjct: 500 FELDAKELLPDEADEYEKETDILDVWFDSGS---SHAAVLEQRPELG---YPADLYLEGS 553
Query: 266 D--------------ILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNV 310
D R A Y K+V +HGF + KG K+SKSLGNV
Sbjct: 554 DQHRGWFQSSLLTSVATRGKAPY-------------KQVLTHGFTVDGKGRKMSKSLGNV 600
Query: 311 IDPIEVIEEVGVDALR 326
IDP +VI++ G D LR
Sbjct: 601 IDPQDVIKKYGADILR 616
Score = 35.5 bits (83), Expect = 0.030
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHG----QKIAK 60
Y N HIGHA I+ D++ + + G D + G D HG K+ K
Sbjct: 59 YANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEK 108
>gnl|CDD|166584 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 63.0 bits (153), Expect = 2e-10
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 52/209 (24%)
Query: 165 YFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIP--- 221
+F + +K L E+ I+P ER ++ + S +KD +SR+ + WG +IP
Sbjct: 410 WFVTMEPLAEKALKAVENGELTIIP-ERFEKIYNHWLSNIKDWCISRQLW-WGHRIPVWY 467
Query: 222 ----------------------------------DDPQYIMYVWIDALTNYLTTTGYLDN 247
DP ++ W + +T G+ D
Sbjct: 468 IVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPD-VLDTWFSSALWPFSTLGWPDV 526
Query: 248 PDGSKAKFWPADLHVIGKDILRFHAIYWPAFLL------SANLPLPKKVFSHGFILH-KG 300
KF+P + G DIL F W A ++ + +P V+ HG I +G
Sbjct: 527 SAEDFKKFYPTTVLETGHDILFF----WVARMVMMGIEFTGTVPF-SYVYLHGLIRDSQG 581
Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFL 329
K+SK+LGNVIDP++ I+E G DALR+ L
Sbjct: 582 RKMSKTLGNVIDPLDTIKEFGTDALRFTL 610
Score = 36.8 bits (85), Expect = 0.012
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 11/55 (20%)
Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQ 75
H+GHA + + D++ R++R+ G L+ GTD +AG+ T++ V++
Sbjct: 104 HMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTD-----------HAGIATQLVVEK 147
>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 57.7 bits (140), Expect = 6e-09
Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
Query: 254 KFWPADLHVIGKDILRFHAIYWPA------FLLSANLPLPKKVFSHGFILHK-GEKISKS 306
+F+P L G DIL F W A L+ LP K VF H + GEK+SKS
Sbjct: 535 RFFPTSLLETGSDILFF----WVARMVMMSLHLTDKLPF-KTVFLHAMVRDSQGEKMSKS 589
Query: 307 LGNVIDPIEVIEEVGVDAL 325
GNVIDP+EVIE + + L
Sbjct: 590 KGNVIDPLEVIEGISLQDL 608
Score = 43.1 bits (102), Expect = 2e-04
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 11/53 (20%)
Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFV 73
HIGHA I D L R+HR+ G + L+ GTD H AG+ T+V V
Sbjct: 76 HIGHALTGAIQDSLIRYHRMKGDETLWVPGTD-H----------AGIATQVVV 117
>gnl|CDD|178436 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 57.5 bits (139), Expect = 9e-09
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 14/96 (14%)
Query: 228 MYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLS---ANL 284
M VW D+ +++ G L + +G +PADL++ G D H ++ + LL+
Sbjct: 541 MDVWFDSGSSW---AGVLGSREGLS---YPADLYLEGSDQ---HRGWFQSSLLTSVATKG 591
Query: 285 PLP-KKVFSHGFIL-HKGEKISKSLGNVIDPIEVIE 318
P K V +HGF+L KG K+SKSLGNV+DP VIE
Sbjct: 592 KAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIE 627
Score = 37.8 bits (88), Expect = 0.007
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKI 58
Y N HIGHA I+ D + R+ L G V + G D HG I
Sbjct: 42 YANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPI 85
>gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 56.1 bits (135), Expect = 2e-08
Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 239 LTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFL------LSANLPLPKKVFS 292
L+ G+ D+ D KA F+P + G DIL F W A + L ++P +KV+
Sbjct: 591 LSVLGWPDDTDDLKA-FYPTSVLETGHDILFF----WVARMVMMGMQLGGDVPF-RKVYL 644
Query: 293 HGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVN 351
H I G K+SKSLGNVIDP+EVI + ++ L L K+ K+G KK
Sbjct: 645 HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKK--- 701
Query: 352 ADLANGI 358
D NGI
Sbjct: 702 -DFPNGI 707
Score = 36.8 bits (85), Expect = 0.015
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQ 75
HIGHA I D + R+ R+ G + L+ G D +AG+ T+V V++
Sbjct: 144 HIGHALTAAIEDTIIRWKRMSGYNALWVPGVD-----------HAGIATQVVVEK 187
>gnl|CDD|161856 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong
to two families so broadly different that they are
represented by separate models. This model includes
both archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS.
Length = 938
Score = 51.7 bits (124), Expect = 4e-07
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG 50
+REK +++ A Y N H GH I +V ARF R+ G +VLF G
Sbjct: 21 PDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLG 70
Score = 47.5 bits (113), Expect = 7e-06
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 29/229 (12%)
Query: 255 FWPADLHVIGKDILRFHAIYWPAFLLSANLP---LPKKVFSHGFILHKGEKISKSLGNVI 311
++P D + GKD++ H ++ F A P P+ + +G+++ +G+K+SKS GNV+
Sbjct: 571 WYPLDWRISGKDLIPNHLTFY-IFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVL 629
Query: 312 DPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNL--VSRSVSMI 369
+ +E+ G D R + IA + D D + V + L + ++
Sbjct: 630 TLEQAVEKFGADVARLY----IADAAETVQDADWKESEVEG-TILRLERLYEFAEEITKE 684
Query: 370 LKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRAL-AQVISLVSEVDRYF 428
G + D + S + ++E E M+N +A+ + L ++VD Y
Sbjct: 685 SNLETGEE-----TSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWY- 738
Query: 429 DAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
++ VL +E LL F P A ++++ +
Sbjct: 739 --------RRRGGVNHKDVLARYLETW---IKLLAPFAPHFAEEMWEEV 776
>gnl|CDD|178544 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 50.1 bits (120), Expect = 1e-06
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 255 FW-PADLHVIGKDILRFH---AIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNV 310
+W P DL V GKD+++ H AIY + A P+ +G ++ EK+SKS GN
Sbjct: 668 YWYPFDLRVSGKDLIQNHLTFAIYNHTAIW-AEEHWPRGFRCNGHLMLNSEKMSKSTGNF 726
Query: 311 IDPIEVIEEVGVDALRYFL 329
+ + IEE DA R+ L
Sbjct: 727 LTLRQAIEEFSADATRFAL 745
Score = 37.0 bits (86), Expect = 0.012
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLF 47
K EK + + Y N H+GHA+ + + A +HRL G +VL
Sbjct: 42 KPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLL 87
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 49.4 bits (118), Expect = 2e-06
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 21/183 (11%)
Query: 6 KLYISTAIAYPN-AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN 64
K Y+ YP+ A H+GH D+LAR+ R+ G +VL G D G + A
Sbjct: 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIE 170
Query: 65 AGVTTKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKG 122
G K+ +N FR L SYD I TTE ++ + ++ ++ +G Y+
Sbjct: 171 TGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQA 230
Query: 123 CYS-GWYSLRDEAYYNDDEVYKGADGQYYNAQHNPV------QWMEEEGYFFRLSAYQDK 175
W N++ V DG H PV QWM +++AY D+
Sbjct: 231 EVPVNWCPALGTVLANEEVV----DGLSERGGH-PVIRKPMRQWM------LKITAYADR 279
Query: 176 LLS 178
LL
Sbjct: 280 LLE 282
Score = 37.9 bits (88), Expect = 0.007
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 302 KISKSLGNVIDPIEVIEEVGVDALRYF 328
K+SKS GNV++P +V+ E G D+LR +
Sbjct: 723 KMSKSRGNVVNPDDVVSEYGADSLRLY 749
>gnl|CDD|183418 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 49.1 bits (118), Expect = 2e-06
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNAD 353
GF+L +G+K+SKS GNVI + IEE G D +R + + + D D
Sbjct: 569 GFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLY----LTSSAELLQDAD-----WREK 619
Query: 354 LANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRA 413
+ + R + + + I D+ +LS +R+++E E M++ A
Sbjct: 620 EVESVRRQLERFYELAKELIE--IGGEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDA 677
Query: 414 LAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKI 473
V E+ W L++ V EV+ LL F P LA ++
Sbjct: 678 ---VQEAFYELLNDLR----WYLRRVG----EANNKVLREVLEIWIRLLAPFTPHLAEEL 726
Query: 474 FDIL 477
+ L
Sbjct: 727 WHKL 730
Score = 46.4 bits (111), Expect = 2e-05
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 20 PHIGHAYEMIIADVLARFHRLDGLDVLFT-----TGT 51
H+GH I DV+AR+ R+ G +VLF TGT
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGT 37
>gnl|CDD|178996 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 47.4 bits (114), Expect = 9e-06
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 41/189 (21%)
Query: 288 KKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKD--- 344
KK+ + G + K+SKS GNV+DP ++IE+ G D R F + G +KD
Sbjct: 561 KKLLTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMF------AGPPEKDLEW 609
Query: 345 ---GLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEI 401
G++ G + R +++ A D+ + + ++++
Sbjct: 610 SDSGVE---------GAYRFLQRVWRLVVDAKGEAGALDVAALSEDKELRRKLHKTIKKV 660
Query: 402 RENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAIL 461
E+++ + A+A ++ LV+ + + D Q D+A V E + L L
Sbjct: 661 TEDIERLRFNTAIAALMELVNALYKAEDEQ----------DKA-----VLREALEILVRL 705
Query: 462 LQAFVPKLA 470
L F P LA
Sbjct: 706 LAPFAPHLA 714
Score = 43.2 bits (103), Expect = 2e-04
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA----AQNAGVTTK 70
YP+ H+GH I DV+AR+ R+ G +VL G D A A+NA + T
Sbjct: 42 YPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD--------AFGLPAENAAIKTG 93
Query: 71 V----FVDQNSRNFRDMADVLDISYD 92
+ +N N + L SYD
Sbjct: 94 THPAEWTYENIANMKKQLKSLGFSYD 119
>gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 44.7 bits (107), Expect = 6e-05
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFL 329
GF+ GEK+SKSLGN +++++ + LR+FL
Sbjct: 258 GFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFL 293
Score = 40.9 bits (97), Expect = 8e-04
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 20 PHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQN 76
HIGHA ++ DVL R+ R G V + T D+ KI K A G + K ++
Sbjct: 37 AHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDD---KIIKRANEEGESIKELTERY 93
Query: 77 SRNFRDMADVLDI 89
F + D L++
Sbjct: 94 IAAFHEDMDALNV 106
>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 42.0 bits (99), Expect = 3e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 300 GEKISKSLGNVIDPIEVIEEVGVDALRYFLV 330
G+K+SKSL N DP EVI++ G DALR +L+
Sbjct: 612 GKKMSKSLKNYPDPNEVIDKYGADALRLYLI 642
>gnl|CDD|149360 pfam08264, Anticodon_1, Anticodon-binding domain. This domain is
found valyl and leucyl tRNA synthetases. It binds to the
anticodon of the tRNA.
Length = 148
Score = 42.0 bits (99), Expect = 3e-04
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 387 DESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEV--DRYFDAQKP--WELKKTNPD 442
D ILS +++++E+ E + + A + + D Y + K +
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPDESK 60
Query: 443 RASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
R +T LY EV+ L LL F+P + +++ L
Sbjct: 61 RRATTLY---EVLETLLRLLAPFMPFITEELWQKL 92
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 41.1 bits (96), Expect = 6e-04
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 254 KFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNV 310
K +PAD G D R F+ + + LL P K + +G +L G+K+SK L N
Sbjct: 670 KIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPF-KNLICNGLVLASDGKKMSKRLKNY 728
Query: 311 IDPIEVIEEVGVDALRYFLVREIA 334
DP+ ++++ G D+LR +L+ +A
Sbjct: 729 PDPLYILDKYGADSLRLYLINSVA 752
Score = 28.4 bits (63), Expect = 4.7
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 20 PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKI 58
PH GH II D + R+ G V G D HG I
Sbjct: 117 PHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPI 155
>gnl|CDD|161877 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln).
Length = 465
Score = 39.3 bits (92), Expect = 0.003
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80
HIGHA I+ DVL R+ R G V + + KI K A+ G + ++ +
Sbjct: 36 HIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAY 95
Query: 81 RDMADVLDISYDDF-IRTTEKRHH--DTCRILWKK----ISDKGDIY 120
+ L++ D R TE + L +K +SD GD+Y
Sbjct: 96 FEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVY 142
Score = 37.0 bits (86), Expect = 0.013
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 289 KVFSH-GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFL 329
K + H GF++ EK+SKSLGN +V++ + LRYFL
Sbjct: 251 KYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFL 292
>gnl|CDD|179109 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 36.7 bits (86), Expect = 0.013
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 295 FILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFL 329
F+ KGEKISKS GNVI + +E ++LR F+
Sbjct: 273 FLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFM 307
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 36.6 bits (84), Expect = 0.017
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 293 HGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVR 331
+GFI GEK+SKSLGN EV+++ + +R+F++R
Sbjct: 499 NGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR 537
Score = 31.6 bits (71), Expect = 0.48
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTG-TDEHGQKIAKAAQNA 65
H+GHA M++ D++AR+ R G + + TD + IA+AA+N
Sbjct: 263 HLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENG 308
>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family.
This small subfamily includes diaminopropionate
ammonia-lyase from Salmonella typhimurium and a small
number of close homologs, about 50 % identical in
sequence. The enzyme is a pyridoxal phosphate-binding
homodimer homologous to threonine dehydratase (threonine
deaminase).
Length = 376
Score = 32.6 bits (74), Expect = 0.23
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 44 DVLFTTGTD-EHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA--------DVLDISYDDF 94
F T TD HG+ +A AAQ G V++ + S R + D++YDD
Sbjct: 94 QATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDT 153
Query: 95 IRTTEKRHHDTCRILWKKISDKG--DIYKGCYSGWYSLRDEAY 135
+R + ++ + + +G I G+ +L DEA
Sbjct: 154 VRLAMQMAQQHGWVVVQDTAWEGYEKIPTWIMQGYATLADEAV 196
>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 32.4 bits (75), Expect = 0.30
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 17/50 (34%)
Query: 299 KGEKISKSLGNVIDPIEVIEE-----------------VGVDALRYFLVR 331
+G K+S GNV+ ++++E VG+DA+RYF +
Sbjct: 319 EGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLS 368
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 32.2 bits (73), Expect = 0.33
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 293 HGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLV 330
+GF+ EK+SKSLGN +VI+ ALR FL+
Sbjct: 314 NGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLL 351
Score = 29.9 bits (67), Expect = 1.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 7 LYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG-TDEHGQKIAKAAQ 63
+Y+ AY + HIGHA + DVL R+ + G +V + TD + IA+A +
Sbjct: 83 MYVCGVTAYDLS--HIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANE 138
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 32.1 bits (72), Expect = 0.40
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 31 ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNS 77
A++LAR ++L D + D Q +A AA+N G +VF+D N+
Sbjct: 396 AELLARLNQLAAADKVLARDPDTFEQFVANAAEN-GPVQQVFIDANT 441
>gnl|CDD|161886 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori.
Length = 566
Score = 31.2 bits (71), Expect = 0.67
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVL 46
+ +K+ I + A P HIGH II D LAR G DV+
Sbjct: 109 LKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153
>gnl|CDD|152856 pfam12422, Condensin2nSMC, Condensin II non structural maintenance
of chromosomes subunit. This domain family is found in
eukaryotes, and is approximately 150 amino acids in
length. This family is part of a non-SMC subunit of
condensin II which is involved in maintenance of the
structural integrity of chromosomes. Condensin II is
made up of SMC (structural maintenance of chromosomes)
and non-SMC subunits. The non-SMC subunits bind to the
catalytic ends of the SMC subunit dimer. The condensin
holocomplex is able to introduce superhelical tension
into DNA in an ATP hydrolysis- dependent manner,
resulting in the formation of positive supercoils in the
presence of topoisomerase I and of positive knots in the
presence of topoisomerase II.
Length = 152
Score = 30.3 bits (69), Expect = 1.3
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 22/130 (16%)
Query: 382 AFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNP 441
+F S SIL +EI ++NQ+ + + V+ E+ F A W K +
Sbjct: 21 SFLFSLSSILI------KEIHTLIKNQIPKLSKS-VLEAYGEI--LFRA---W--KNASG 66
Query: 442 DRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHK 501
+ V ++ + + AI + P LA K ++L + + +D+ +L +
Sbjct: 67 ALKEEIEEVIIQDLMEGAIHAET--PLLAKKFREVLSSFHNKKARKGVDK------LLLR 118
Query: 502 TFDPIFPRFL 511
++PI R L
Sbjct: 119 LYEPILWRAL 128
>gnl|CDD|184153 PRK13572, PRK13572, anthranilate synthase component I; Provisional.
Length = 435
Score = 30.1 bits (68), Expect = 1.4
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 160 MEEEGYFFRL-SAYQDKL---LSYYESHPEFILPIERR----NEVISFVKSGLKDLSLSR 211
+ +EGY F L SA + + +Y ++PEF++ I + E IS + K L +
Sbjct: 18 LRDEGYPFILESAEKGQRKARYTYISANPEFMVRIGNKTKVDGETISKESNPFKALKENF 77
Query: 212 KTFDWGIKIPDDPQYIMYVWIDALTNYL 239
K G + ++ Y+ DA+ NY+
Sbjct: 78 KITQSGDRFTGG--FVGYIAYDAVHNYI 103
>gnl|CDD|179068 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1156
Score = 29.7 bits (68), Expect = 1.9
Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 298 HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREI 333
G+K++ G+ IDP +++ +GV+A++ +LV E+
Sbjct: 979 EAGDKLTD--GS-IDPHDILRVLGVEAVQNYLVNEV 1011
>gnl|CDD|182559 PRK10573, PRK10573, type IV pilin biogenesis protein; Provisional.
Length = 399
Score = 28.7 bits (65), Expect = 3.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 453 EVIRQLAILLQAFVP 467
E IRQLA LLQA +P
Sbjct: 63 EFIRQLATLLQAGLP 77
>gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
YlqF. Members of this protein family are GTP-binding
proteins involved in ribosome biogenesis, including the
essential YlqF protein of Bacillus subtilis, which is an
essential protein. They are related to Era, EngA, and
other GTPases of ribosome biogenesis, but are circularly
permuted. This family is not universal, and is not
present in Escherichia coli, and so is not as well
studied as some other GTPases. This model is built for
bacterial members.
Length = 276
Score = 28.6 bits (65), Expect = 3.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 23/87 (26%)
Query: 55 GQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKIS 114
G+K+AK GVT + + ++D L++ DT ILW K
Sbjct: 140 GKKVAKVGNRPGVTK-------GQQWIKLSDGLELL-------------DTPGILWPKFE 179
Query: 115 DKGDIYKGCYSGWYSLRDEAYYNDDEV 141
D+ K +G +++DEA + ++V
Sbjct: 180 DQEVGLKLAATG--AIKDEA-LDLEDV 203
>gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 28.4 bits (64), Expect = 4.7
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 155 NPVQW---MEEEGYFFRLSAYQDKL-LSYYESHPEFILPIERRNEVISFVKSGLKDL 207
+ W +E G+ +R++ Q L LS + F+ +R E+ + LKDL
Sbjct: 225 DEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFV---AKRREIAARYDRLLKDL 278
>gnl|CDD|177900 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 28.1 bits (63), Expect = 4.8
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 376 MIPTPGAFTESDESILSVCSRVLQEIRENM 405
M P F ESDES+ S VL EIR N+
Sbjct: 423 MTPPDSIFNESDESLRS----VLSEIRLNL 448
>gnl|CDD|147899 pfam05990, DUF900, Alpha/beta hydrolase of unknown function
(DUF900). This family consists of several hypothetical
proteins of unknown function mostly found in Rhizobium
species. Members of this family have an alpha/beta
hydrolase fold.
Length = 230
Score = 28.1 bits (63), Expect = 4.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 449 YVTVEVIRQLAILLQAFVPKLANKIFD-ILFVADENR 484
++ +E +RQLAI +A P + KI + IL D +
Sbjct: 106 WLVMEALRQLAI--EADEPDVVAKIGNVILAAPDIDV 140
>gnl|CDD|132323 TIGR03280, methan_mark_11, putative methanogenesis marker protein
11. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Length = 292
Score = 28.2 bits (63), Expect = 5.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 185 EFILPIERRNEVISFVKSGLKDLSLSRKT 213
EF + E + ++ K LK+ +LS +T
Sbjct: 194 EFAVYPEYKEKLAREFKKLLKEYTLSDET 222
>gnl|CDD|129509 TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcus jannaschii
family. The seryl-tRNA synthetases from a few of the
Archaea, represented by this model, are very different
from the set of mutually more closely related seryl-tRNA
synthetases from Eubacteria, Eukaryotes, and other
Archaea. Although distantly homologous, the present set
differs enough not to be recognized by the pfam model
tRNA-synt_2b that recognizes the remainder of seryl-tRNA
synthetases among oither class II amino-acyl tRNA
synthetases.
Length = 520
Score = 28.0 bits (62), Expect = 6.5
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 26/115 (22%)
Query: 142 YKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLS----------YYESHPEFILPIE 191
Y+ +G+ +A+ P+++ + G+ +R A K L + + PE E
Sbjct: 321 YQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETE--E 378
Query: 192 RRNEVISFVKSGLKDLSLS--------------RKTFDWGIKIPDDPQYIMYVWI 232
R++ + + +L L RK D GI+ PD P+Y M + +
Sbjct: 379 IRDKTLELAEDAADELDLEWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSL 433
>gnl|CDD|178741 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 27.8 bits (62), Expect = 6.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 242 TGYLDNPDGSKAKFWPADLHVIGKDIL 268
TG L N GS FW A L G DIL
Sbjct: 168 TGALRNLCGSTDGFWSATLEAGGVDIL 194
>gnl|CDD|150150 pfam09381, Porin_OmpG, Outer membrane protein G (OmpG). Porins are
channel proteins in the outer membrane of gram negative
bacteria which mediate the uptake of molecules required
for growth and survival. Escherichia coli OmpG forms a
14 stranded beta-barrel and in contrast to most porins,
appears to function as a monomer. The central pore of
OmpG is wider than other E. coli porins and it is
speculated that it may form a non-specific channel for
the transport of larger oligosaccharides.
Length = 280
Score = 27.7 bits (61), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 215 DWGIKIPDDPQYIMYVWIDALTNYLTTTGYLD 246
DW +K+ DD ++ ++ + N L TTGY D
Sbjct: 117 DWDVKLTDDLRFNGWLSMYKFANDLNTTGYAD 148
>gnl|CDD|180405 PRK06110, PRK06110, hypothetical protein; Provisional.
Length = 322
Score = 27.7 bits (62), Expect = 7.0
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 54 HGQKIAKAAQNAGVTTKVFVDQ-NSR 78
HGQ +A AA+ G+ + V NS
Sbjct: 81 HGQSVAFAARRHGLAATIVVPHGNSV 106
>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
Length = 332
Score = 27.4 bits (61), Expect = 8.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 50 GTDEHGQKIAKAAQNAGVTTKVFVDQNS 77
G D+ G+++ K A AGV + D+++
Sbjct: 79 GKDKFGEEMKKCATAAGVNVHYYEDEST 106
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.422
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,705,655
Number of extensions: 583510
Number of successful extensions: 1293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1241
Number of HSP's successfully gapped: 91
Length of query: 511
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 413
Effective length of database: 3,876,889
Effective search space: 1601155157
Effective search space used: 1601155157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)