HHsearch alignment for GI: 255764462 and conserved domain: TIGR00460

>TIGR00460 fmt methionyl-tRNA formyltransferase; InterPro: IPR005794 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The top-scoring characterised proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. ; GO: 0004479 methionyl-tRNA formyltransferase activity, 0006412 translation.
Probab=100.00  E-value=0  Score=551.23  Aligned_cols=302  Identities=38%  Similarity=0.621  Sum_probs=283.5

Q ss_pred             CEEEEECCCHHH---HHHHHHHHHCC-----CCEEEEEEC-------CCCCCCCCCCC--CCCCHHHHHHHH----CCCC
Q ss_conf             069997798688---99999999679-----849999827-------57822757875--678988999998----5997
Q gi|255764462|r    3 LRVVFMGTSEFA---VATLQALVSSS-----HSIVSVYTQ-------PPRPAGRRGLK--SVLSAVHKKAQE----FSLP   61 (310)
Q Consensus         3 mkI~f~G~~~~~---~~~l~~l~~~~-----~~i~~vvt~-------~d~~~~~~~~~--~~~~~v~~~a~~----~~ip   61 (310)
T Consensus         1 ~~i~F~Gtp~f~nfs~~~l~~l~~~~~sCGi~~v~~VvT~qfaretlpd~~~g-R~kke~l~~~~~k~~A~~sP~~~gip   79 (385)
T TIGR00460         1 LRILFFGTPTFSNFSLPVLEELREDNDSCGIFEVVGVVTQQFARETLPDKPAG-RGKKEILTPPPVKVLALKSPLQKGIP   79 (385)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHCCCCCHHH-CCCCEECCCCCHHHHHCCCCCCCCCE
T ss_conf             95899627606665599899997568961278888862121333137630343-37630016773354301477888770


Q ss_pred             EEEECCCC-C--CCHHHHHHCCC---------CCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             99702434-4--20023421045---------731320242112443001211001010232221033200244443103
Q gi|255764462|r   62 ALVPTKLG-Q--EEYEQFLSFNA---------DVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAG  129 (310)
Q Consensus        62 ~~~~~~~~-~--~~~~~l~~~~~---------D~~v~~~~~~ii~~~il~~~~~g~iN~H~s~LP~yRG~~pi~wai~~g  129 (310)
T Consensus        80 v~qp~~~~~~~~~~~~~v~~L~pendGsGaPfD~~vvvsfG~iL~~~~ld~~p~g~iNVHpSlLP~~RG~APIq~~il~G  159 (385)
T TIGR00460        80 VLQPEKQRLLALEELPLVEELKPENDGSGAPFDVIVVVSFGKILPKELLDLFPYGCINVHPSLLPRYRGGAPIQRAILNG  159 (385)
T ss_pred             EECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHCC
T ss_conf             40650002012343304550687667888852124445130112489986079974765701042336676589998667


Q ss_pred             CCCCCCCEEEECCC-CCHHHHHHH-CCCCCCCCC------------C-------HHHHHHCCCCCCHHHHHHHCCH-HHC
Q ss_conf             45454320220123-320345420-145433322------------1-------0110000023301122320000-000
Q gi|255764462|r  130 DNETGIAIMKMDKH-LDTGPVAFM-RKVPISSNI------------N-------TAGLQQELSVLCAHAMVEAMDK-LEQ  187 (310)
Q Consensus       130 ~~~~g~t~~~~~~~-~D~G~Ii~q-~~~~I~~~~------------t-------~~~L~~kl~~~~~~ll~~~l~~-i~~  187 (310)
T Consensus       160 d~~tGvTIm~~~~~R~D~G~Il~qt~~~~i~~~~skGrvndstadfnseGlPrr~~~L~~~L~~lGa~lL~~tl~~r~~~  239 (385)
T TIGR00460       160 DKKTGVTIMQMVEKRMDAGDILKQTEEVPIEEEDSKGRVNDSTADFNSEGLPRRSGTLSDKLSELGASLLIETLKERLLE  239 (385)
T ss_pred             CCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf             50213178996243378640676142434565334775244412326677640258899999872604688898877513


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCC---CCCCCEEEEEECCCC---------EEEEEEEEE
Q ss_conf             24655678830001112221122221024-56888887543127---665424899405851---------466788656
Q gi|255764462|r  188 NNLPLSPQIENGITYAEKISKGETRVNFC-RSAENVHNHIRALS---PFPGAWLEMMIGNKH---------ERIKLLESQ  254 (310)
Q Consensus       188 g~~~~~~Q~~~~~sy~~k~~~~d~~Idw~-~~a~~I~n~iRA~~---P~PgA~~~~~~~~~~---------~~iki~~~~  254 (310)
T Consensus       240 g~~~p~~q~~~~~TyA~~i~kE~~~i~w~~~sa~~~~n~iral~niiP~p~~~~~~----~~rkdaqnsvl~~i~~~~a~  315 (385)
T TIGR00460       240 GKNKPEPQDAEEATYAPKIKKEEERIDWNRQSAEELLNKIRALNNIIPWPLAWLTL----EGRKDAQNSVLKRIKIHKAK  315 (385)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH----HHHHHHHHHHHCCEEEEEEE
T ss_conf             34686136767885563413677631267656999999998751447765010001----00122444431242588843


Q ss_pred             ECCC-------C-CCCCEEEE---CCEEEEEC-CCEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf             5178-------8-88737974---88799807-9869999885486971248899647999988407
Q gi|255764462|r  255 LVEG-------E-GKPGEVIN---PNFTIACS-QGAVRIMRLQRAGGRVLDIGDFLLGCPVIIGCIV  309 (310)
Q Consensus       255 ~~~~-------~-~~pG~I~~---~~l~V~c~-dG~i~I~~lq~~Gkk~m~a~df~ng~~~~~G~~l  309 (310)
T Consensus       316 ~~~~~~~~ltG~~~~pG~i~~~~~~gi~va~~~~~~l~l~~~Q~~Gkk~m~~~df~nG~~~~~~~~~  382 (385)
T TIGR00460       316 VVDLSTYDLTGKASKPGEIVDIKRKGILVACGKDGILLLEELQPAGKKVMRAEDFYNGYRREWYDVF  382 (385)
T ss_pred             EEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEHHHCCHHHHHEEEHHHHHHHHHHHCCCCC
T ss_conf             4314455435444576217864676138880787555330307001102016665522332204567