HHsearch results for GI: 255764462 and protein with PDBid: 1fmt_A
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A*
Probab=100.00 E-value=0 Score=590.78 Aligned_cols=303 Identities=39% Similarity=0.673 Sum_probs=289.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCH-HHHHHCC
Q ss_conf 706999779868899999999679849999827578227578756789889999985997997024344200-2342104
Q gi|255764462|r 2 TLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEEY-EQFLSFN 80 (310)
Q Consensus 2 ~mkI~f~G~~~~~~~~l~~l~~~~~~i~~vvt~~d~~~~~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~-~~l~~~~ 80 (310)
+|||+||||++||+++|++|++++++|++|||+||++.| |+.+...++++++|+++|||+++++++++++. +.+++++
T Consensus 3 ~mkI~f~Gs~~~a~~~L~~L~~~~~~i~~VvT~pd~~~g-rg~~~~~~~v~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~ 81 (314)
T 1fmt_A 3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAG-RGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQ 81 (314)
T ss_dssp CCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC-------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 628999889889999999999789977999909998556-8884889979999998599840352346288999998519
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCC
Q ss_conf 57313202421124430012110010102322210332002444431034545432022012332034542014543332
Q gi|255764462|r 81 ADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSN 160 (310)
Q Consensus 81 ~D~~v~~~~~~ii~~~il~~~~~g~iN~H~s~LP~yRG~~pi~wai~~g~~~~g~t~~~~~~~~D~G~Ii~q~~~~I~~~ 160 (310)
+|++++++|+++||+++|+.|++|+||+|||+||+|||++|++|||+|||+++|+|+|+|++++|+|||++|++++|.++
T Consensus 82 ~dl~i~~~~~~iip~~~l~~~~~g~iN~H~slLP~yRG~~pi~wail~g~~~~Gvti~~~~~~~D~G~Ii~q~~~~i~~~ 161 (314)
T 1fmt_A 82 ADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAE 161 (314)
T ss_dssp CSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTT
T ss_pred CCEEEEEECCCCCCHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCC
T ss_conf 99999971264699999857897778255554777667588999997799753159999626756777147899630456
Q ss_pred CCHHHHHHCCCCCCHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 21011000002330112232000000024655678830001112221122221024568888875431276654248994
Q gi|255764462|r 161 INTAGLQQELSVLCAHAMVEAMDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMM 240 (310)
Q Consensus 161 ~t~~~L~~kl~~~~~~ll~~~l~~i~~g~~~~~~Q~~~~~sy~~k~~~~d~~Idw~~~a~~I~n~iRA~~P~PgA~~~~~ 240 (310)
+|+.+|+++++..+..++.+++..+.+++.++++|+++.+|||||++++|++|||+++|++|+|+||||+||||||+.+
T Consensus 162 ~t~~~L~~k~~~~~~~ll~~~l~~l~~~~~~~~~Q~~~~aty~~ki~~~d~~Idw~~~a~~I~~~iRA~~p~pga~~~~- 240 (314)
T 1fmt_A 162 DTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI- 240 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCCGGGCCBCCCCCHHHHBCCTTSBHHHHHHHHHHTTTTTCEEEEE-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCCHHHHEECHHHHHHHHHHHHCCCCCCCCCCEEC-
T ss_conf 5389999998764215668899998669964173898776367878888900158679999977321658999722104-
Q ss_pred ECCCCEEEEEEEEEECCC--CCCCCEEE---ECCEEEEECCCEEEEEEEECCCCCCCCHHHHHCCCC--CCCCCCC
Q ss_conf 058514667886565178--88873797---488799807986999988548697124889964799--9988407
Q gi|255764462|r 241 IGNKHERIKLLESQLVEG--EGKPGEVI---NPNFTIACSQGAVRIMRLQRAGGRVLDIGDFLLGCP--VIIGCIV 309 (310)
Q Consensus 241 ~~~~~~~iki~~~~~~~~--~~~pG~I~---~~~l~V~c~dG~i~I~~lq~~Gkk~m~a~df~ng~~--~~~G~~l 309 (310)
+++++++++++..+. .++||+|+ +++++|+|+||+|+|.+||+||||+|+|.||+||++ +.+|++|
T Consensus 241 ---~g~~ikI~~~~~~~~~~~~~PG~i~~~~~~~l~V~c~dG~l~I~~lq~eGKk~m~a~df~ng~r~~~~~G~~l 313 (314)
T 1fmt_A 241 ---EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRL 313 (314)
T ss_dssp ---TTEEEEEEEEEEECCCCCSCTTBEEEEETTEEEEECSBSEEEEEEEEETTSCCEEHHHHHHHSGGGSCTTCBC
T ss_pred ---CCCEEEEEEEEEECCCCCCCCCEEEEECCCEEEEEECCEEEEECEEECCCCCEEEHHHHHCCCCCCCCCCCEE
T ss_conf ---8966999999993477899996899977983999979839997889999999822999962897658997993