RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764462|ref|YP_003064709.2| methionyl-tRNA
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(310 letters)
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 321 bits (825), Expect = 1e-88
Identities = 70/312 (22%), Positives = 141/312 (45%), Gaps = 13/312 (4%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
++ V + ++AL+++ + I +++T P G K+ +V + A E +P
Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNP----GEKAFYGSVARLAAERGIPV 56
Query: 63 LVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121
P + E+ + DV Y +I IL G +N H SLLP++RG AP
Sbjct: 57 YAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAP 116
Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181
+ ++ G+ ETG+ + +M K D G + ++ I+ + L +L + +
Sbjct: 117 LNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQT 176
Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALS-PFPGAWLEMM 240
+ ++ N+ Q EN T + + ++ + + + A +HN +RA++ P+PGA+ +
Sbjct: 177 LPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYV- 235
Query: 241 IGNKHERIKLLESQLVE--GEGKPGEVINPN-FTIACSQGAVRIMRLQRAGGRVLDIGDF 297
+++ + S++ + +PG VI+ IAC GA+ I+ Q G +
Sbjct: 236 ---GNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQL 292
Query: 298 LLGCPVIIGCIV 309
++ G +
Sbjct: 293 AQTLGLVQGSRL 304
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A*
Length = 314
Score = 291 bits (745), Expect = 2e-79
Identities = 118/304 (38%), Positives = 175/304 (57%), Gaps = 11/304 (3%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
LR++F GT +FA L AL+SS H++V V+TQP RPAGR G K + S V A+E LP
Sbjct: 4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGR-GKKLMPSPVKVLAEEKGLPV 62
Query: 63 LVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121
P L QE + ADV VVVAYGL++P+ +L +LG N H SLLPRWRGAAP
Sbjct: 63 FQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAP 122
Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181
IQR++ AGD ETG+ IM+MD LDTG + + PI++ + L +L+ L ++
Sbjct: 123 IQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITT 182
Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMI 241
+ +L Q E +TYAEK+SK E R+++ SA + IRA +P+P +WLE+
Sbjct: 183 LKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI-- 240
Query: 242 GNKHERIKLLESQLVE--GEGKPGEVINPN---FTIACSQGAVRIMRLQRAGGRVLDIGD 296
+ + +K+ ++ +++ PG ++ N +A G + ++ LQ AG + + D
Sbjct: 241 --EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQD 298
Query: 297 FLLG 300
L
Sbjct: 299 LLNS 302
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 154 bits (388), Expect = 3e-38
Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 32/319 (10%)
Query: 1 MTLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSL 60
++++ +G S F L H +V V+T P + + +A++ +
Sbjct: 21 QSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKA-------DPLGLEAEKDGV 73
Query: 61 PALVPTKL------GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLP 114
P ++ + ++ + A++ V+ IP I++A + G H SLLP
Sbjct: 74 PVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLP 133
Query: 115 RWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTA-GLQQELSVL 173
R RGA+ I ++ GD + G +I D LDTG + ++ + + + + L
Sbjct: 134 RHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPE 193
Query: 174 CAHAMVEAMDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFP 233
MV+A+ + + P PQ E G TY K ++N+ + AE +HN IR P
Sbjct: 194 GIKGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVP 253
Query: 234 GAWLEMMIGNKHERIKLLESQL-------------VEGEGKPGEVINPN-FTIACSQGAV 279
GAW E +++ S L + G +PG V +
Sbjct: 254 GAWTEA----CEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVTKAGLILFGNDDKML 309
Query: 280 RIMRLQRAGGRVLDIGDFL 298
+ +Q G+++ +F
Sbjct: 310 LVKNIQLEDGKMILASNFF 328
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis,
methyltransferase; HET: FON U5P; 1.2A {Escherichia coli}
SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Length = 305
Score = 140 bits (352), Expect = 4e-34
Identities = 68/306 (22%), Positives = 133/306 (43%), Gaps = 7/306 (2%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
++ V + ++AL+++ + I +++T P G K+ +V + A E +P
Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNP----GEKAFYGSVARLAAERGIPV 56
Query: 63 LVPTKLGQEEY-EQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121
P + + E+ + DV Y +I IL G +N H SLLP++RG AP
Sbjct: 57 YAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAP 116
Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181
+ ++ G+ ETG+ + +M K D G + ++ I+ + L +L + +
Sbjct: 117 LNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQT 176
Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMI 241
+ ++ N+ Q EN T + + ++ + + + A +HN +RA++ P +
Sbjct: 177 LPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVA-DPWPGAFSYV 235
Query: 242 GNKHERIKLLESQLVEGEGKPGEVINPN-FTIACSQGAVRIMRLQRAGGRVLDIGDFLLG 300
GN+ + + +PG VI+ IAC GA+ I+ Q G +
Sbjct: 236 GNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQT 295
Query: 301 CPVIIG 306
++ G
Sbjct: 296 LGLVQG 301
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 102 bits (255), Expect = 1e-22
Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 3 LRVVFM----GTSEFAVATLQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVH 52
+ +V + G+ LQA++ + + + +V++ GL+ A
Sbjct: 1 MNIVVLISGNGS------NLQAIIDACKTNKIKGTVRAVFSNKADA---FGLERARQAGI 51
Query: 53 KKAQEFSLPALVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASL 112
+ +E + + DV V+ + ++ ++ N H SL
Sbjct: 52 ATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSL 111
Query: 113 LPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSV 172
LP++ G ++A+ GD E G ++ + LD GPV KVP+ + + + +
Sbjct: 112 LPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQT 171
Query: 173 LCAHAMVEAMDKLEQNNLPLSPQIENGITYAEK 205
+ L EN +
Sbjct: 172 QEHAIYPLVISWFADGRL---KMHENAAWLDGQ 201
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis;
1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A*
1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A*
1mej_B 1men_A*
Length = 209
Score = 101 bits (253), Expect = 2e-22
Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 13/195 (6%)
Query: 18 LQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQE 71
LQAL+ S+ I V + GL A +
Sbjct: 14 LQALIDSTREPNSSAQIDIVISNKAAV---AGLDKAERAGIPTRVINHKLYKNRVEFDSA 70
Query: 72 EYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDN 131
F+ D+ + + ++ + N H SLLP ++G+ ++A+ G
Sbjct: 71 IDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVT 130
Query: 132 ETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLP 191
TG + + + +D G + VP+ A L + + + A+ + +
Sbjct: 131 VTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQ 190
Query: 192 LSPQIENG-ITYAEK 205
L ENG I + ++
Sbjct: 191 L---GENGKICWVKE 202
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP:
b.46.1.1 c.65.1.1
Length = 260
Score = 97.3 bits (241), Expect = 4e-21
Identities = 37/200 (18%), Positives = 82/200 (41%), Gaps = 15/200 (7%)
Query: 70 QEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAG 129
+ +E+ N + + + +IP+ I H + LP RG +P+Q I G
Sbjct: 67 ELTFEKVKLINPEYILFPHWSWIIPKEIFE--NFTCVVFHMTDLPFGRGGSPLQNLIERG 124
Query: 130 DNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNN 189
+T I+ +K+D +DTG + F R + + ++ + + M
Sbjct: 125 IKKTKISAIKVDGGIDTGDIFFKRDLDLYGTAEEIFMR------ASKIIFNDMIPELLTK 178
Query: 190 LPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRAL--SPFPGAWLEMMIGNKHER 247
P+ + E T ++ ++ ++ E ++++IR L +P A+++ R
Sbjct: 179 RPVPQKQEGEATVFQRRKPEQSEISPDFDLEKIYDYIRMLDGEGYPRAFIKY----GKYR 234
Query: 248 IKLLESQLVEGE-GKPGEVI 266
++ + + G+ E+I
Sbjct: 235 LEFSRASMKNGKIIADVEII 254
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics,
niaid, seattle structural genomics center for infectious
disease; 2.20A {Anaplasma phagocytophilum HZ}
Length = 215
Score = 96.6 bits (240), Expect = 6e-21
Identities = 40/217 (18%), Positives = 76/217 (35%), Gaps = 30/217 (13%)
Query: 3 LRVVFM----GTSEFAVATLQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVH 52
LRV + G++ L+AL + + I V + G
Sbjct: 9 LRVGVLISGRGSN------LEALAKAFSTEESSVVISCVISNNAEARGL----------- 51
Query: 53 KKAQEFSLPALV--PTKLGQEEYEQFL-SFNADVAVVVAYGLVIPQRILNATKLGFYNGH 109
AQ + +P V L E L + D+ + + ++P++ + N H
Sbjct: 52 LIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIH 111
Query: 110 ASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQE 169
SLLP ++G ++A AG G + + + LD GP+ VP+ L
Sbjct: 112 PSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASR 171
Query: 170 LSVLCAHAMVEAMDKLEQNNLPLSPQIENGITYAEKI 206
+ + + + Q+ + L T +++
Sbjct: 172 ILAAEHVCYPKGVKLIAQDKIKLCDDGTVQCTGEDEL 208
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 95.8 bits (238), Expect = 1e-20
Identities = 21/121 (17%), Positives = 41/121 (33%)
Query: 70 QEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAG 129
+ + F + A++ ++ Y V+ N H S LP ++GA P +A G
Sbjct: 161 AQWLDVFETSGAELVILARYMQVLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARG 220
Query: 130 DNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNN 189
G + LD GP+ + + L + + A+ +
Sbjct: 221 VKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERR 280
Query: 190 L 190
+
Sbjct: 281 V 281
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas
palustris}
Length = 288
Score = 90.1 bits (223), Expect = 6e-19
Identities = 24/123 (19%), Positives = 42/123 (34%)
Query: 70 QEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAG 129
+ D+ V+ Y ++ + N H S LP ++GA P +A G
Sbjct: 156 AAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRG 215
Query: 130 DNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNN 189
G + LD GP+ IS A L ++ + + A+ +
Sbjct: 216 VKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDR 275
Query: 190 LPL 192
+ L
Sbjct: 276 VIL 278
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae
PV}
Length = 302
Score = 90.1 bits (223), Expect = 6e-19
Identities = 24/123 (19%), Positives = 46/123 (37%)
Query: 70 QEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAG 129
E ADV V+ Y ++P ++ N H S LP + GA P +A + G
Sbjct: 171 AEVSRLVGHHQADVVVLARYMQILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRG 230
Query: 130 DNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNN 189
G + + LD GP+ V +S + + + + + + ++
Sbjct: 231 VKLIGATCHYVTEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDR 290
Query: 190 LPL 192
+ +
Sbjct: 291 VLV 293
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 85.0 bits (210), Expect = 2e-17
Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 17/196 (8%)
Query: 17 TLQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQ 70
L L+ +V + + PR A ++ LP TK Q
Sbjct: 101 CLGDLLYRHRLGELDMEVVGIISNHPREALSV-------SLVGDIPFHYLPVTPATKAAQ 153
Query: 71 EEYEQFLS--FNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMA 128
E + + AD+ V+ Y ++ + N H S LP ++GA P +A
Sbjct: 154 ESQIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQAHTR 213
Query: 129 GDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQN 188
G G + LD GP+ +S + L ++ + + A+ ++
Sbjct: 214 GVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLED 273
Query: 189 NLPLSPQIENGITYAE 204
L E + +A+
Sbjct: 274 R--LIVNGERTVVFAD 287
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 79.7 bits (196), Expect = 9e-16
Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 37/227 (16%)
Query: 3 LRVVFMGTSEFAVATLQ------ALVSSSHSIVSVYTQPPRPAGR-RGLKSVLSAVHKKA 55
+RV F +F A + + ++ P+ L+ + +
Sbjct: 52 IRVEFRQPDDFDEAGFRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKADHCLNDLLYRQ 111
Query: 56 QEFSLPALVPTKLGQEEYEQFL------------------------------SFNADVAV 85
+ L V + + L A++ +
Sbjct: 112 RIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVI 171
Query: 86 VVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLD 145
+ Y V+ + N H SLLP ++GA P +A G G ++ LD
Sbjct: 172 LARYMQVLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLD 231
Query: 146 TGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLPL 192
GP+ + + L + + + A+ + + L
Sbjct: 232 EGPIIAQGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYHIERRVFL 278
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 72.9 bits (178), Expect = 1e-13
Identities = 30/199 (15%), Positives = 68/199 (34%), Gaps = 11/199 (5%)
Query: 18 LQALVSSS------HSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQE 71
LQA++ + SI V + P+ ++ + + +
Sbjct: 15 LQAIIDAIESGKVNASIELVISDNPKA---YAIERCKKHNVECKVIQRKEFPSKKEFEER 71
Query: 72 EYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDN 131
+ ++ V+ + ++ L N H SL+P ++G ++A+ G
Sbjct: 72 MALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVK 131
Query: 132 ETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLP 191
+G + +D+ +D GPV VP+ + L + + + + Q+ +
Sbjct: 132 FSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRII 191
Query: 192 LSPQ--IENGITYAEKISK 208
+ + I TY
Sbjct: 192 IDGRKVIVKDATYGTLPVN 210
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN;
glycinamide ribonucleotide transformylase, structure;
1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Length = 215
Score = 71.4 bits (174), Expect = 2e-13
Identities = 34/197 (17%), Positives = 68/197 (34%), Gaps = 12/197 (6%)
Query: 18 LQALVSSSHS-----IVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEE 72
L++L+ ++ +V+V R + A
Sbjct: 26 LRSLLDAAVGDYPARVVAVGVDREC----RAAEIAAEASVPVFTVRLADHPSRDAWDVAI 81
Query: 73 YEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNE 132
+ D+ V + ++ + L+ N H +LLP + G + A+ G
Sbjct: 82 TAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKV 141
Query: 133 TGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLPL 192
TG + +D DTGP+ + VP+ + L + + V +V A+ L + +
Sbjct: 142 TGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGV-- 199
Query: 193 SPQIENGITYAEKISKG 209
+ T K++ G
Sbjct: 200 -TVVGRTATMGRKVTIG 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 55.3 bits (133), Expect = 2e-08
Identities = 59/326 (18%), Positives = 107/326 (32%), Gaps = 109/326 (33%)
Query: 3 LRVV-------FMGTSEF--AVATL----QALVSSSHSIVSVYTQPPRPAGRRGLKSVLS 49
L + ++ ++ A L + + ++ Y A R K S
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 50 AVHKKAQE--FSLPALVPTKLGQ---EEYEQFLSFNADVAVVVAYGLVIPQRILNATKLG 104
A+ + E L A+ GQ ++Y + L R L T
Sbjct: 144 ALFRAVGEGNAQLVAIFG---GQGNTDDYFEEL------------------RDLYQT--- 179
Query: 105 FYNGH-ASLLPRWRGAAPIQRAIMAGDNET------GIAIMKMDKHLDTGP-VAFMRKVP 156
Y+ L+ + +A ++ + G+ I++ ++ P ++ +P
Sbjct: 180 -YHVLVGDLI---KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 157 ISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLPLSP--------------QIENGITY 202
IS + G+ Q L H +V A L +P Q G+
Sbjct: 236 ISCPLI--GVIQ----LA-HYVVTA------KLLGFTPGELRSYLKGATGHSQ---GLVT 279
Query: 203 AEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMIGNK-HE---RIKLLESQL--- 255
A I++ ++ +F +V I L F + IG + +E L S L
Sbjct: 280 AVAIAETDSWESF---FVSVRKAITVL--F---F----IGVRCYEAYPNTSLPPSILEDS 327
Query: 256 VE-GEGKPGEVINPNFTIA-CSQGAV 279
+E EG P P +I+ +Q V
Sbjct: 328 LENNEGVPS----PMLSISNLTQEQV 349
Score = 51.9 bits (124), Expect = 2e-07
Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 93/255 (36%)
Query: 12 EFAVATLQALVSSSHSIVSVYTQ----------P-PRPAGRRGLKSVLSA-VHKKAQEFS 59
+F+ TL L+ ++ V+TQ P P +LS + S
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP----DKDYLLSIPI-------S 237
Query: 60 LP--AL-------VPTK-LGQE--EYEQFLSFNAD------VAVVVA--------YGLVI 93
P + V K LG E +L AV +A + V
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV- 296
Query: 94 PQRILNATKLGFYNGHASLLPRWRG--AAP--------IQRAIMAGDNE-------TGIA 136
A + F+ G R A P ++ ++ + + +
Sbjct: 297 ----RKAITVLFFIG-------VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 137 IMKMDKHLD-TG---PVAFMRKVPIS-----SNINTAGLQQELSVLCAH-AMVEAMDKLE 186
++ +++ T P ++V IS N+ +G Q L L +A L+
Sbjct: 346 QEQVQDYVNKTNSHLPAG--KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 187 QNNLPLS---PQIEN 198
Q+ +P S + N
Sbjct: 404 QSRIPFSERKLKFSN 418
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 28.6 bits (63), Expect = 2.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 223 HNHIRALSPFPGA 235
HNH A+ P+ GA
Sbjct: 84 HNHPSAIEPYNGA 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.4
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 41 RRGLKSVLSAVHKKAQEFSLPALVPTKLGQE 71
++ LK + +++ A + S PAL K E
Sbjct: 19 KQALKKLQASLKLYADD-SAPALA-IKATME 47
>1x6m_A GFA, glutathione-dependent formaldehyde-activating enzyme;
Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus
denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Length = 196
Score = 27.3 bits (60), Expect = 4.0
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 186 EQNNLPLSPQIENGITYAEKISKGET--------RVNFCRSAENVHNHI 226
+ + + + P ++NGI A+ G T V A+ HNH+
Sbjct: 5 DTSGVKIHPAVDNGIKPAQPGFAGGTLHCKCSTNPVRVAVRAQTAHNHV 53
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Length = 92
Score = 26.2 bits (58), Expect = 9.3
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 212 RVNFCRSAENVHNHIRALSPFPGAWLEMMIGNKHERIKLLESQLVEGEGKPGEVINPN 269
V + I A + ++G K RI+ L + + + G P +
Sbjct: 27 GVEVRVTPTRTEIIILATRT------QNVLGEKGRRIRELTAVVQKRFGFPEGSVELY 78
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,583,595
Number of extensions: 116003
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 24
Length of query: 310
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 218
Effective length of database: 3,462,782
Effective search space: 754886476
Effective search space used: 754886476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)