HHsearch results for GI: 255764463 and protein with PDBid: 1wdd_A
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N- methylmethionine, post-translational modification; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* 8ruc_A* 1upm_B* ...
Probab=94.89 E-value=0.24 Score=28.81 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=111.9
Q ss_pred CCCCCHHHHHHHHHHHHHC--CC--EEEECCCCCH-HH------CCCCCCCCC-----CC----CC---CHHHHHHHHHH
Q ss_conf 5765379999999997301--44--7986133271-00------114310013-----65----44---62899999999
Q gi|255764463|r 104 IDPDNLINEGICAIKKNIP--NI--GIITDVALDP-FT------IHGHDGILC-----DG----EI---VNDETIELISH 160 (337)
Q Consensus 104 ~n~dglv~rAIr~IK~~fp--dl--~vi~DVcLc~-YT------~hGHcGi~~-----~g----~I---dND~Tl~~L~k 160 (337)
|.++|+.+-....+-+.|. ++ +-+.|+-|-+ |. .+|-.|+=+ +. -| .--.+-+.+++
T Consensus 108 f~~~~i~~lltsi~GNvfg~~~~~~lRL~Dl~lP~~~~~~F~GP~fGI~G~R~~lgv~~RPLlgtiiKPklGLsp~~~A~ 187 (477)
T 1wdd_A 108 FEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGR 187 (477)
T ss_dssp SCTTCHHHHHHHHHSSGGGBTTEEEEEEEEEECCHHHHTTSCCCSSCHHHHHHHHTCCSSCEEECBCSSSSCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHH
T ss_conf 47773899999997332564414555898862899999539999986188999857888861322567665789899999
Q ss_pred HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH-------HHHCCCCCCCCCCCCC
Q ss_conf 999999628973524667677999999999877885773003366643543010167-------5310244677774431
Q gi|255764463|r 161 AAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD-------AISTRDLLKGDKKTYY 233 (337)
Q Consensus 161 ~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd-------A~~S~p~~~gdr~sYQ 233 (337)
++-.++..|.|+|-= .++..|-+ |-||++ |+.-+-.-.|.++.|-
T Consensus 188 ~~ye~~~GGvDfIKD----------------DE~ladq~------------f~p~~eRv~~v~~av~~a~~eTG~~k~y~ 239 (477)
T 1wdd_A 188 ACYECLRGGLDFTKD----------------DENVNSQP------------FMRWRDRFVFCAEAIYKSQAETGEIKGHY 239 (477)
T ss_dssp HHHHHHHTTCSEEEC----------------CTTCSSBT------------TBCHHHHHHHHHHHHHHHHHHHSSCCEEE
T ss_pred HHHHHHHCCCCEECC----------------CCCCCCCC------------CCCHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 999998268855316----------------75557988------------78579999999999999999669866998
Q ss_pred CCCCH--HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 57211--478898888766408987995531145899999996---2499899993461899999999888978899999
Q gi|255764463|r 234 LDPAN--VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMM 308 (337)
Q Consensus 234 md~~n--~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~---~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~ 308 (337)
.+..+ .+|-++.+..=.+.|++.+||-|...=++.++.+++ ...+|+.+ |-+|-=++-. ....| ++.. + +
T Consensus 240 ~NiT~~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~a~~~L~~~~~~~~l~ih~-HrA~~ga~~r-~~~~G-is~~-v-l 314 (477)
T 1wdd_A 240 LNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHI-HRAMHAVIDR-QKNHG-MHFR-V-L 314 (477)
T ss_dssp EECCCSSHHHHHHHHHHHHHHTCSEEEEEHHHHCHHHHHHHHHHHHHHTCEEEE-ECTTHHHHHS-CSSSE-ECHH-H-H
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCCCCC-CCCCC-CCHH-H-H
T ss_conf 268889999999999999973997898604455188999999976662916887-6775512456-87776-5599-9-9
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999997726999982
Q gi|255764463|r 309 ESLLAFKRAGCDGIFT 324 (337)
Q Consensus 309 E~l~~~kRAGAd~Iit 324 (337)
..-.+=||||.|++
T Consensus 315 --~Kl~RLaGaD~ih~ 328 (477)
T 1wdd_A 315 --AKALRMSGGDHIHA 328 (477)
T ss_dssp --HHHHHHHCCSEEEC
T ss_pred --HHHHHHCCCCCCCC
T ss_conf --99999718782145