Query gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 337 No_of_seqs 171 out of 1711 Neff 4.7 Searched_HMMs 23785 Date Mon May 30 09:04:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764463.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1w5q_A Delta-aminolevulinic ac 100.0 0 0 1117.1 33.6 328 9-337 7-336 (337) 2 3obk_A Delta-aminolevulinic ac 100.0 0 0 1104.0 34.8 327 10-337 20-348 (360) 3 1w1z_A Delta-aminolevulinic ac 100.0 0 0 1104.2 31.6 323 10-335 6-328 (328) 4 1l6s_A Porphobilinogen synthas 100.0 0 0 1084.8 30.6 318 13-334 3-322 (323) 5 1h7n_A 5-aminolaevulinic acid 100.0 0 0 1068.7 35.0 328 9-337 10-341 (342) 6 1pv8_A Delta-aminolevulinic ac 100.0 0 0 1070.0 29.7 324 12-336 2-329 (330) 7 1ykw_A Rubisco-like protein; b 96.7 0.012 5.1E-07 37.6 8.7 158 111-324 152-321 (435) 8 2qyg_A Ribulose bisphosphate c 96.2 0.057 2.4E-06 33.1 10.2 160 111-324 172-341 (452) 9 3l5l_A Xenobiotic reductase A; 95.9 0.11 4.7E-06 31.1 10.4 177 70-289 160-355 (363) 10 2ze3_A DFA0005; organic waste 95.9 0.12 5E-06 30.9 11.4 133 164-319 100-255 (275) 11 3kdn_A Rubisco, ribulose bisph 95.7 0.05 2.1E-06 33.5 7.9 185 106-326 98-317 (444) 12 1wdd_A Ribulose bisphosphate c 94.9 0.24 1E-05 28.8 9.3 186 104-324 108-328 (477) 13 1o66_A 3-methyl-2-oxobutanoate 94.8 0.22 9.3E-06 29.1 9.0 138 56-221 82-221 (275) 14 2d69_A Ribulose bisphosphate c 94.7 0.1 4.3E-06 31.4 7.0 187 102-324 91-312 (430) 15 3nwr_A A rubisco-like protein; 94.5 0.11 4.7E-06 31.1 6.8 136 153-324 174-318 (432) 16 2oem_A 2,3-diketo-5-methylthio 94.2 0.28 1.2E-05 28.4 8.4 136 153-324 152-299 (413) 17 3eoo_A Methylisocitrate lyase; 94.1 0.38 1.6E-05 27.5 11.1 110 182-319 140-262 (298) 18 2zvi_A 2,3-diketo-5-methylthio 94.1 0.35 1.5E-05 27.7 8.6 139 152-325 165-314 (425) 19 3fk4_A Rubisco-like protein; s 94.1 0.27 1.1E-05 28.5 8.0 139 152-324 152-300 (414) 20 3c6c_A 3-keto-5-aminohexanoate 93.6 0.27 1.1E-05 28.5 7.3 93 30-129 10-103 (316) 21 3bg3_A Pyruvate carboxylase, m 93.5 0.17 7.2E-06 29.9 6.1 105 60-196 253-363 (718) 22 1xg4_A Probable methylisocitra 93.1 0.55 2.3E-05 26.4 13.8 78 182-287 136-213 (295) 23 3no5_A Uncharacterized protein 92.8 0.4 1.7E-05 27.4 7.1 79 42-127 4-82 (275) 24 1lt8_A Betaine-homocysteine me 92.4 0.43 1.8E-05 27.1 6.9 214 68-322 54-296 (406) 25 3chv_A Prokaryotic domain of u 92.4 0.49 2E-05 26.8 7.1 80 42-128 8-87 (284) 26 1zlp_A PSR132, petal death pro 91.3 0.42 1.7E-05 27.2 5.8 49 238-287 187-235 (318) 27 2xed_A Putative maleate isomer 90.9 0.33 1.4E-05 27.9 5.0 164 110-295 79-251 (273) 28 3b8i_A PA4872 oxaloacetate dec 90.5 0.44 1.9E-05 27.1 5.3 206 59-321 25-259 (287) 29 2hjp_A Phosphonopyruvate hydro 89.7 0.28 1.2E-05 28.4 3.8 81 239-319 165-258 (290) 30 3lye_A Oxaloacetate acetyl hyd 88.8 0.7 2.9E-05 25.7 5.3 83 239-322 177-273 (307) 31 3ajx_A 3-hexulose-6-phosphate 87.9 1.6 6.7E-05 23.3 10.9 168 65-324 10-185 (207) 32 3iix_A Biotin synthetase, puta 87.5 1.7 7.1E-05 23.1 9.1 55 60-124 79-133 (348) 33 2ehh_A DHDPS, dihydrodipicolin 86.9 1.1 4.5E-05 24.4 5.3 160 65-283 18-184 (294) 34 2qiw_A PEP phosphonomutase; NP 86.8 1.8 7.8E-05 22.9 8.6 69 238-323 166-234 (255) 35 1xky_A Dihydrodipicolinate syn 86.2 2 8.3E-05 22.7 11.4 163 63-285 28-197 (301) 36 3ih1_A Methylisocitrate lyase; 85.3 2.2 9.2E-05 22.4 12.9 80 239-319 174-266 (305) 37 3noe_A DAP-A, dihydrodipicolin 85.2 2 8.3E-05 22.7 5.9 111 63-204 17-134 (292) 38 3o1n_A 3-dehydroquinate dehydr 84.9 2.3 9.5E-05 22.3 7.5 214 27-294 11-240 (276) 39 2eq5_A 228AA long hypothetical 84.5 2.4 1E-04 22.1 11.0 176 107-294 20-212 (228) 40 1o5k_A DHDPS, dihydrodipicolin 83.9 2.1 9E-05 22.4 5.7 115 64-209 29-150 (306) 41 3js3_A 3-dehydroquinate dehydr 83.2 2.7 0.00011 21.8 10.2 170 65-285 29-209 (258) 42 2yxg_A DHDPS, dihydrodipicolin 83.1 2.6 0.00011 21.8 5.8 117 64-211 17-140 (289) 43 3e02_A Uncharacterized protein 82.9 1.9 8E-05 22.8 5.0 66 52-128 20-86 (311) 44 1s2w_A Phosphoenolpyruvate pho 82.7 2.8 0.00012 21.7 8.4 131 109-284 66-216 (295) 45 3e96_A Dihydrodipicolinate syn 82.1 2.3 9.6E-05 22.2 5.2 109 63-203 28-143 (316) 46 3ixl_A Amdase, arylmalonate de 81.6 3 0.00013 21.4 7.1 160 109-296 54-220 (240) 47 2r8w_A AGR_C_1641P; APC7498, d 80.4 3.3 0.00014 21.1 5.9 135 31-207 27-170 (332) 48 1vrd_A Inosine-5'-monophosphat 80.3 3.4 0.00014 21.1 10.5 94 71-202 239-345 (494) 49 1vyr_A Pentaerythritol tetrani 80.3 3.4 0.00014 21.1 12.3 168 67-277 160-341 (364) 50 3ble_A Citramalate synthase fr 79.8 3.2 0.00014 21.2 5.3 27 64-90 37-65 (337) 51 1xxx_A DHDPS, dihydrodipicolin 79.7 3.5 0.00015 21.0 5.7 141 63-231 30-176 (303) 52 3m5v_A DHDPS, dihydrodipicolin 79.6 3.5 0.00015 21.0 10.9 117 64-211 24-148 (301) 53 1rqb_A Transcarboxylase 5S sub 79.6 3.5 0.00015 21.0 8.5 232 59-327 108-363 (539) 54 3e49_A Uncharacterized protein 79.5 3.6 0.00015 20.9 5.6 53 65-124 29-82 (311) 55 2hmc_A AGR_L_411P, dihydrodipi 78.9 3.7 0.00016 20.8 6.5 112 63-207 42-161 (344) 56 2o7s_A DHQ-SDH, bifunctional 3 77.5 4.1 0.00017 20.5 6.4 101 79-194 56-174 (523) 57 2r91_A 2-keto-3-deoxy-(6-phosp 76.4 4.3 0.00018 20.3 6.1 148 64-276 15-169 (286) 58 3f4w_A Putative hexulose 6 pho 76.4 4.4 0.00018 20.3 13.0 170 64-324 9-186 (211) 59 2cw6_A Hydroxymethylglutaryl-C 76.1 4.4 0.00019 20.3 6.1 26 155-180 155-180 (298) 60 3lot_A Uncharacterized protein 75.9 4.5 0.00019 20.3 6.8 72 43-126 7-83 (314) 61 3eb2_A Putative dihydrodipicol 75.4 4.6 0.00019 20.2 6.0 110 63-203 20-136 (300) 62 3hgj_A Chromate reductase; TIM 75.2 4.7 0.0002 20.1 13.4 168 69-276 153-335 (349) 63 3flu_A DHDPS, dihydrodipicolin 75.1 4.7 0.0002 20.1 6.0 112 63-205 23-141 (297) 64 2x7v_A Probable endonuclease 4 74.7 4.8 0.0002 20.1 5.0 92 70-174 14-107 (287) 65 1oy0_A Ketopantoate hydroxymet 74.7 4.8 0.0002 20.1 9.0 140 55-222 98-240 (281) 66 3bsm_A Mandelate racemase/muco 74.0 5 0.00021 19.9 6.5 151 49-201 112-313 (413) 67 2rfg_A Dihydrodipicolinate syn 73.7 5.1 0.00021 19.9 6.4 117 64-211 17-140 (297) 68 3cpr_A Dihydrodipicolinate syn 73.5 5.1 0.00022 19.9 5.5 117 64-211 33-156 (304) 69 1z41_A YQJM, probable NADH-dep 72.8 5.3 0.00022 19.8 13.4 52 71-122 147-209 (338) 70 1jvn_A Glutamine, bifunctional 72.5 5.4 0.00023 19.7 6.2 87 232-336 439-545 (555) 71 3fa4_A 2,3-dimethylmalate lyas 72.5 5.4 0.00023 19.7 5.9 81 239-320 169-263 (302) 72 1l6w_A Fructose-6-phosphate al 72.4 1.4 5.9E-05 23.7 1.8 93 66-202 64-164 (220) 73 3ffs_A Inosine-5-monophosphate 72.2 5.5 0.00023 19.7 6.6 15 159-173 195-209 (400) 74 1mxs_A KDPG aldolase; 2-keto-3 72.1 4.2 0.00018 20.5 4.2 130 67-281 37-170 (225) 75 1wbh_A KHG/KDPG aldolase; lyas 71.8 5.4 0.00023 19.7 4.7 130 67-281 27-160 (214) 76 2dgd_A 223AA long hypothetical 71.7 5.2 0.00022 19.8 4.6 120 167-295 87-214 (223) 77 5rub_A Rubisco (ribulose-1,5-b 71.2 5.6 0.00024 19.6 4.7 146 153-325 195-347 (490) 78 2pln_A HP1043, response regula 71.2 5.8 0.00024 19.5 6.4 65 232-300 43-109 (137) 79 1ps9_A 2,4-dienoyl-COA reducta 70.2 6.1 0.00026 19.4 12.1 165 68-275 141-326 (671) 80 1xi3_A Thiamine phosphate pyro 70.1 6.1 0.00026 19.3 6.3 65 236-324 115-189 (215) 81 2vc6_A MOSA, dihydrodipicolina 69.8 6.2 0.00026 19.3 5.9 115 64-211 17-140 (292) 82 3d0c_A Dihydrodipicolinate syn 67.9 6.7 0.00028 19.1 5.7 109 63-203 28-143 (314) 83 1w3i_A EDA, 2-keto-3-deoxy glu 67.2 7 0.00029 19.0 5.2 111 64-207 16-133 (293) 84 1f6k_A N-acetylneuraminate lya 67.1 7 0.00029 19.0 6.7 116 63-209 19-142 (293) 85 3cyv_A URO-D, UPD, uroporphyri 66.5 7.2 0.0003 18.9 5.4 182 107-324 121-324 (354) 86 3ez4_A 3-methyl-2-oxobutanoate 66.0 7.3 0.00031 18.8 11.3 93 238-336 98-199 (269) 87 2ojp_A DHDPS, dihydrodipicolin 65.9 7.4 0.00031 18.8 5.2 115 63-208 17-138 (292) 88 2zic_A Dextran glucosidase; TI 65.9 7.4 0.00031 18.8 5.6 104 66-175 29-193 (543) 89 1wx0_A Transaldolase; structur 65.5 5.6 0.00023 19.6 3.7 67 66-175 71-137 (223) 90 1yad_A Regulatory protein TENI 65.4 7.5 0.00032 18.7 5.4 55 249-323 126-190 (221) 91 3kts_A Glycerol uptake operon 65.4 7.5 0.00032 18.7 6.6 55 251-325 125-179 (192) 92 1ua7_A Alpha-amylase; beta-alp 65.1 7.6 0.00032 18.7 6.2 111 63-173 12-170 (422) 93 3khj_A Inosine-5-monophosphate 65.0 7.7 0.00032 18.7 6.9 44 159-202 156-212 (361) 94 1mdl_A Mandelate racemase; iso 63.8 8 0.00034 18.5 4.8 63 55-130 133-196 (359) 95 1vpx_A Protein (transaldolase 63.8 5.9 0.00025 19.4 3.6 67 66-175 74-140 (230) 96 3fkr_A L-2-keto-3-deoxyarabona 63.0 8.3 0.00035 18.4 6.4 111 63-204 24-144 (309) 97 2v82_A 2-dehydro-3-deoxy-6-pho 62.5 4.3 0.00018 20.3 2.7 71 65-176 16-88 (212) 98 2qdd_A Mandelate racemase/muco 61.6 5.9 0.00025 19.4 3.3 77 42-131 121-198 (378) 99 3b2n_A Uncharacterized protein 61.6 5 0.00021 19.9 2.9 64 236-302 35-102 (133) 100 3daq_A DHDPS, dihydrodipicolin 61.4 8.8 0.00037 18.3 5.6 117 64-211 19-142 (292) 101 2qjj_A Mandelate racemase/muco 61.4 8.9 0.00037 18.3 6.3 93 42-136 103-216 (402) 102 1m53_A Isomaltulose synthase; 61.3 8.9 0.00037 18.2 6.1 80 40-132 24-115 (570) 103 1gjw_A Maltodextrin glycosyltr 61.3 8.9 0.00037 18.2 6.8 96 37-134 82-206 (637) 104 3eeg_A 2-isopropylmalate synth 61.0 9 0.00038 18.2 5.9 59 155-213 150-223 (325) 105 3a5f_A Dihydrodipicolinate syn 60.4 5.4 0.00023 19.7 2.9 119 65-211 19-141 (291) 106 3dz1_A Dihydrodipicolinate syn 60.1 9.3 0.00039 18.1 6.1 118 63-209 24-146 (313) 107 1qtw_A Endonuclease IV; DNA re 59.6 9.5 0.0004 18.0 6.7 93 69-174 13-107 (285) 108 1zco_A 2-dehydro-3-deoxyphosph 59.4 9.6 0.0004 18.0 7.4 78 43-136 23-100 (262) 109 1vhc_A Putative KHG/KDPG aldol 59.4 6.3 0.00026 19.3 3.1 132 66-281 27-161 (224) 110 1nvm_A HOA, 4-hydroxy-2-oxoval 59.1 9.7 0.00041 18.0 6.1 25 156-180 149-173 (345) 111 1wa3_A 2-keto-3-deoxy-6-phosph 59.1 4.8 0.0002 20.0 2.4 154 65-323 19-176 (205) 112 3cz5_A Two-component response 58.5 9.9 0.00042 17.9 8.9 92 236-335 37-138 (153) 113 1vr6_A Phospho-2-dehydro-3-deo 57.5 10 0.00043 17.8 7.6 62 66-132 118-179 (350) 114 1jcn_A Inosine monophosphate d 57.1 10 0.00044 17.8 10.6 96 68-201 254-362 (514) 115 2oog_A Glycerophosphoryl diest 56.7 11 0.00044 17.7 13.6 130 176-336 143-280 (287) 116 2yw3_A 4-hydroxy-2-oxoglutarat 55.9 6.5 0.00027 19.2 2.7 38 245-282 116-156 (207) 117 1r3s_A URO-D, uroporphyrinogen 55.9 11 0.00046 17.6 7.4 74 108-182 132-223 (367) 118 2czd_A Orotidine 5'-phosphate 55.5 11 0.00046 17.6 7.1 79 65-178 9-87 (208) 119 1j93_A UROD, uroporphyrinogen 55.4 11 0.00047 17.6 5.5 73 109-181 129-218 (353) 120 3b4u_A Dihydrodipicolinate syn 55.3 11 0.00047 17.6 5.3 114 64-205 20-141 (294) 121 2nuw_A 2-keto-3-deoxygluconate 54.7 11 0.00048 17.5 5.9 115 63-210 15-136 (288) 122 1r30_A Biotin synthase; SAM ra 53.7 12 0.0005 17.4 7.5 57 61-125 95-151 (369) 123 2qsj_A DNA-binding response re 51.9 8.5 0.00036 18.4 2.7 47 254-300 51-101 (154) 124 1vlj_A NADH-dependent butanol 51.1 13 0.00054 17.1 5.3 15 266-280 339-353 (407) 125 3mz2_A Glycerophosphoryl diest 50.4 13 0.00056 17.1 14.0 139 177-336 138-277 (292) 126 3h7c_X Agmatine deiminase; str 49.7 7 0.00029 19.0 2.0 39 111-149 193-237 (383) 127 2qxy_A Response regulator; reg 49.6 14 0.00057 17.0 6.2 69 231-302 28-100 (142) 128 3cwn_A Transaldolase B; direct 49.3 14 0.00058 17.0 3.6 77 102-186 121-205 (337) 129 3eul_A Possible nitrate/nitrit 48.7 14 0.00059 16.9 9.0 92 236-335 47-148 (152) 130 2nx9_A Oxaloacetate decarboxyl 48.0 14 0.00061 16.8 8.8 51 60-121 150-200 (464) 131 3eod_A Protein HNR; response r 47.5 14 0.00057 17.0 3.2 66 232-300 32-102 (130) 132 2v9d_A YAGE; dihydrodipicolini 47.5 15 0.00062 16.8 5.7 117 64-211 48-171 (343) 133 1o5o_A Uracil phosphoribosyltr 47.0 15 0.00063 16.7 5.9 56 67-140 149-205 (221) 134 1ydn_A Hydroxymethylglutaryl-C 46.3 15 0.00064 16.7 6.0 24 64-87 22-45 (295) 135 1wpc_A Glucan 1,4-alpha-maltoh 45.8 16 0.00065 16.6 5.9 65 67-132 24-105 (485) 136 1qkk_A DCTD, C4-dicarboxylate 45.6 16 0.00066 16.6 4.7 69 232-303 28-101 (155) 137 2jk1_A HUPR, hydrogenase trans 45.1 10 0.00042 17.9 2.2 69 231-302 24-98 (139) 138 2yr1_A 3-dehydroquinate dehydr 44.6 16 0.00068 16.5 10.5 175 65-289 29-211 (257) 139 1q7z_A 5-methyltetrahydrofolat 43.9 17 0.0007 16.4 14.7 173 149-324 245-437 (566) 140 3m47_A Orotidine 5'-phosphate 43.8 17 0.0007 16.4 6.7 96 66-196 23-119 (228) 141 2qgq_A Protein TM_1862; alpha- 43.8 17 0.0007 16.4 4.3 34 56-89 23-57 (304) 142 1eep_A Inosine 5'-monophosphat 43.7 17 0.0007 16.4 11.0 69 109-202 180-261 (404) 143 3ewb_X 2-isopropylmalate synth 43.0 17 0.00072 16.3 5.4 31 62-92 21-52 (293) 144 2rjn_A Response regulator rece 42.4 17 0.00074 16.3 3.8 69 231-302 31-104 (154) 145 3f6c_A Positive transcription 41.8 16 0.00068 16.5 2.9 64 236-302 32-99 (134) 146 3ktc_A Xylose isomerase; putat 41.7 8.6 0.00036 18.3 1.5 22 152-173 103-124 (333) 147 2csu_A 457AA long hypothetical 41.6 18 0.00076 16.2 4.1 83 55-145 57-156 (457) 148 3dhu_A Alpha-amylase; structur 41.4 18 0.00076 16.2 5.9 106 66-174 28-170 (449) 149 3k13_A 5-methyltetrahydrofolat 40.1 19 0.0008 16.0 6.4 185 63-263 32-257 (300) 150 1i5e_A Uracil phosphoribosyltr 40.0 19 0.0008 16.0 5.4 50 67-134 137-186 (209) 151 3cwo_X Beta/alpha-barrel prote 40.0 19 0.0008 16.0 3.1 55 263-336 160-222 (237) 152 3gk0_A PNP synthase, pyridoxin 39.1 20 0.00082 15.9 3.7 47 41-88 114-161 (278) 153 2oz8_A MLL7089 protein; struct 38.7 20 0.00083 15.9 6.1 164 61-297 140-309 (389) 154 1u83_A Phosphosulfolactate syn 38.7 20 0.00084 15.9 3.5 140 65-261 50-193 (276) 155 1f89_A 32.5 kDa protein YLR351 37.9 20 0.00086 15.8 3.7 49 123-176 47-98 (291) 156 2inf_A URO-D, UPD, uroporphyri 37.8 21 0.00086 15.8 5.6 74 108-182 129-219 (359) 157 3lk7_A UDP-N-acetylmuramoylala 37.7 13 0.00055 17.1 1.9 32 236-268 399-430 (451) 158 1b73_A Glutamate racemase; iso 37.5 21 0.00087 15.8 12.6 136 113-259 15-176 (254) 159 1s8n_A Putative antiterminator 37.0 21 0.00089 15.7 5.2 21 112-133 49-69 (205) 160 3gr7_A NADPH dehydrogenase; fl 37.0 21 0.00089 15.7 6.4 43 241-283 230-283 (340) 161 3fs2_A 2-dehydro-3-deoxyphosph 36.5 21 0.0009 15.7 6.1 142 42-207 40-195 (298) 162 3bh4_A Alpha-amylase; calcium, 36.4 22 0.00091 15.6 6.1 64 67-132 20-101 (483) 163 2qq6_A Mandelate racemase/muco 36.0 22 0.00092 15.6 5.9 72 64-137 147-223 (410) 164 2nv1_A Pyridoxal biosynthesis 35.6 20 0.00083 15.9 2.5 38 224-261 116-153 (305) 165 2qgy_A Enolase from the enviro 35.5 22 0.00093 15.6 5.7 64 59-136 142-206 (391) 166 1v93_A 5,10-methylenetetrahydr 35.5 22 0.00093 15.5 9.7 142 53-211 72-218 (296) 167 2ze0_A Alpha-glucosidase; TIM 35.2 23 0.00095 15.5 5.7 105 66-174 29-197 (555) 168 3jr2_A Hexulose-6-phosphate sy 35.1 23 0.00095 15.5 5.9 96 64-196 15-111 (218) 169 3obe_A Sugar phosphate isomera 35.0 23 0.00095 15.5 5.8 102 61-174 24-132 (305) 170 3faw_A Reticulocyte binding pr 34.7 23 0.00096 15.5 6.2 154 40-194 269-478 (877) 171 1zh2_A KDP operon transcriptio 34.6 23 0.00096 15.5 3.5 57 231-290 25-85 (121) 172 2ovl_A Putative racemase; stru 34.0 23 0.00099 15.4 5.8 62 60-135 140-202 (371) 173 3no1_A Isomerase, mandelate ra 33.6 24 0.001 15.4 3.8 65 61-139 161-226 (398) 174 3jte_A Response regulator rece 33.6 24 0.001 15.3 6.7 71 231-302 27-102 (143) 175 3kru_A NADH:flavin oxidoreduct 33.4 24 0.001 15.3 11.8 43 240-282 229-282 (343) 176 2e55_A Uracil phosphoribosyltr 33.3 24 0.001 15.3 5.2 51 67-135 134-184 (208) 177 2ox4_A Putative mandelate race 33.2 24 0.001 15.3 8.4 65 65-129 145-215 (403) 178 3gka_A N-ethylmaleimide reduct 32.6 25 0.001 15.2 12.6 54 70-123 163-227 (361) 179 1y0e_A Putative N-acetylmannos 32.4 25 0.001 15.2 9.4 77 235-334 125-217 (223) 180 3hv2_A Response regulator/HD d 32.2 25 0.0011 15.2 3.4 68 230-300 37-109 (153) 181 1eh9_A Glycosyltrehalose treha 31.8 25 0.0011 15.2 14.2 171 66-243 117-336 (558) 182 2ps2_A Putative mandelate race 31.8 18 0.00077 16.1 1.9 68 49-129 129-196 (371) 183 2ehj_A Uracil phosphoribosyltr 31.6 26 0.0011 15.1 5.8 49 68-134 137-185 (208) 184 1icp_A OPR1, 12-oxophytodienoa 31.4 26 0.0011 15.1 12.4 170 67-277 166-348 (376) 185 2pp0_A L-talarate/galactarate 31.3 26 0.0011 15.1 5.9 67 56-136 165-232 (398) 186 2guy_A Alpha-amylase A; (beta- 31.3 26 0.0011 15.1 6.7 151 40-191 10-224 (478) 187 3nvt_A 3-deoxy-D-arabino-heptu 30.9 26 0.0011 15.1 7.8 62 64-131 152-214 (385) 188 3n4f_A Mandelate racemase/muco 30.8 24 0.001 15.3 2.3 68 65-138 147-215 (392) 189 1ypf_A GMP reductase; GUAC, pu 30.6 27 0.0011 15.0 8.3 53 34-86 39-99 (336) 190 2o55_A Putative glycerophospho 30.6 27 0.0011 15.0 10.7 132 178-336 123-255 (258) 191 2yzr_A Pyridoxal biosynthesis 30.5 26 0.0011 15.0 2.5 36 225-260 113-148 (330) 192 3go2_A Putative L-alanine-DL-g 30.2 27 0.0011 15.0 7.8 74 59-137 136-226 (409) 193 1ydo_A HMG-COA lyase; TIM-barr 30.1 27 0.0011 15.0 6.8 27 60-87 21-47 (307) 194 1i3c_A Response regulator RCP1 29.7 27 0.0012 14.9 4.3 71 232-302 35-116 (149) 195 1ad1_A DHPS, dihydropteroate s 29.7 27 0.0012 14.9 2.8 206 65-333 23-248 (266) 196 2e1d_A Transaldolase; pentose 29.7 28 0.0012 14.9 4.7 147 102-276 108-264 (331) 197 3a5y_A GENX, putative lysyl-tR 29.5 28 0.0012 14.9 2.5 15 75-89 102-116 (345) 198 3dzd_A Transcriptional regulat 29.4 18 0.00076 16.2 1.5 14 113-126 62-75 (368) 199 3ju2_A Uncharacterized protein 29.4 14 0.0006 16.8 1.0 20 70-89 21-40 (284) 200 2eja_A URO-D, UPD, uroporphyri 29.2 28 0.0012 14.9 6.9 180 106-324 113-311 (338) 201 3cu5_A Two component transcrip 29.1 28 0.0012 14.9 2.7 63 237-302 36-102 (141) 202 2rdx_A Mandelate racemase/muco 28.8 28 0.0012 14.8 3.3 75 42-130 121-196 (379) 203 2pmq_A Mandelate racemase/muco 28.8 29 0.0012 14.8 3.6 33 252-284 259-295 (377) 204 1eye_A DHPS 1, dihydropteroate 28.6 29 0.0012 14.8 2.8 213 65-334 26-264 (280) 205 2zbt_A Pyridoxal biosynthesis 28.6 29 0.0012 14.8 2.5 38 224-261 116-153 (297) 206 3aj7_A Oligo-1,6-glucosidase; 28.2 29 0.0012 14.8 5.8 64 66-133 38-111 (589) 207 2zad_A Muconate cycloisomerase 27.9 29 0.0012 14.7 4.2 65 53-131 126-190 (345) 208 3my9_A Muconate cycloisomerase 27.9 30 0.0012 14.7 4.1 81 42-136 122-203 (377) 209 1mxg_A Alpha amylase; hyperthe 27.8 30 0.0012 14.7 6.0 26 67-92 27-52 (435) 210 1twd_A Copper homeostasis prot 27.8 30 0.0012 14.7 6.2 126 42-197 52-194 (256) 211 2hqr_A Putative transcriptiona 27.6 30 0.0013 14.7 5.9 24 169-192 174-197 (223) 212 1xp3_A Endonuclease IV; NFO, D 27.1 30 0.0013 14.6 5.7 58 25-90 62-122 (307) 213 2pcq_A Putative dihidrodipicol 27.1 30 0.0013 14.6 6.1 34 56-89 63-96 (283) 214 1hvx_A Alpha-amylase; hydrolas 26.7 31 0.0013 14.6 6.4 66 66-132 22-104 (515) 215 3cq0_A Putative transaldolase 26.6 31 0.0013 14.6 3.4 68 102-175 113-190 (339) 216 1qwg_A PSL synthase;, (2R)-pho 26.2 32 0.0013 14.5 6.0 164 65-283 23-204 (251) 217 3edf_A FSPCMD, cyclomaltodextr 26.1 32 0.0013 14.5 11.0 156 35-193 103-331 (601) 218 1j0h_A Neopullulanase; beta-al 25.8 32 0.0014 14.5 9.6 150 66-221 174-385 (588) 219 3fem_A Pyridoxine biosynthesis 25.7 32 0.0014 14.5 3.0 49 225-273 113-161 (297) 220 3cyj_A Mandelate racemase/muco 25.6 32 0.0014 14.4 7.0 80 32-131 116-196 (372) 221 3lg3_A Isocitrate lyase; conse 25.5 33 0.0014 14.4 5.2 193 74-291 78-325 (435) 222 1k66_A Phytochrome response re 25.4 33 0.0014 14.4 2.4 66 236-301 38-116 (149) 223 3m16_A Transaldolase; dimer, m 25.2 33 0.0014 14.4 4.4 69 102-175 109-185 (329) 224 2pz0_A Glycerophosphoryl diest 25.1 33 0.0014 14.4 6.3 124 176-336 124-250 (252) 225 2vu1_A Acetyl-COA acetyltransf 25.0 14 0.0006 16.8 0.3 58 136-196 241-306 (392) 226 2w1v_A Nitrilase-2, nitrilase 24.9 33 0.0014 14.4 4.4 59 111-176 25-84 (276) 227 2wmm_A Chromosome partition pr 24.9 20 0.00086 15.8 1.1 44 174-219 23-70 (162) 228 3hht_A NitrIle hydratase alpha 24.7 22 0.0009 15.6 1.2 78 182-260 28-105 (216) 229 1hx0_A Alpha amylase (PPA); in 24.6 34 0.0014 14.3 6.6 71 62-134 16-101 (496) 230 3agp_A Elongation factor TS, e 24.4 22 0.00093 15.6 1.2 16 73-88 403-418 (1289) 231 1m3u_A 3-methyl-2-oxobutanoate 24.4 34 0.0014 14.3 12.6 131 113-253 122-254 (264) 232 3a8g_A NitrIle hydratase subun 24.3 19 0.00079 16.0 0.8 81 179-260 19-99 (207) 233 3m07_A Putative alpha amylase; 24.3 34 0.0014 14.3 5.3 112 66-181 152-293 (618) 234 3h5i_A Response regulator/sens 23.7 24 0.001 15.3 1.2 26 262-287 63-88 (140) 235 1v9s_A Uracil phosphoribosyltr 23.7 35 0.0015 14.2 5.0 49 68-134 137-185 (208) 236 2dh2_A 4F2 cell-surface antige 23.7 35 0.0015 14.2 11.5 120 66-194 34-165 (424) 237 3i6e_A Muconate cycloisomerase 23.5 35 0.0015 14.2 3.8 48 252-299 265-320 (385) 238 1ugp_A NitrIle hydratase alpha 23.3 15 0.00061 16.8 0.1 73 182-260 19-96 (203) 239 1me8_A Inosine-5'-monophosphat 23.1 36 0.0015 14.1 6.1 13 161-173 297-309 (503) 240 3l12_A Putative glycerophospho 23.0 36 0.0015 14.1 7.7 65 251-336 243-307 (313) 241 3hzh_A Chemotaxis response reg 22.9 36 0.0015 14.1 6.8 71 231-302 60-136 (157) 242 2qr3_A Two-component system re 22.9 36 0.0015 14.1 6.6 71 230-302 26-105 (140) 243 2wq7_A RE11660P; lyase-DNA com 22.8 36 0.0015 14.1 5.4 73 15-88 36-109 (543) 244 2bhu_A Maltooligosyltrehalose 22.7 37 0.0015 14.1 11.8 123 66-195 142-301 (602) 245 1bd3_D Uprtase, uracil phospho 22.6 37 0.0015 14.1 4.8 52 111-166 22-73 (243) 246 2cbn_A Ribonuclease Z; phospho 22.6 37 0.0015 14.1 4.2 52 247-326 220-271 (306) 247 1dbw_A Transcriptional regulat 21.9 38 0.0016 14.0 4.4 69 231-302 27-100 (126) 248 2bdq_A Copper homeostasis prot 21.3 39 0.0016 13.9 4.7 33 59-92 64-99 (224) 249 3o6c_A PNP synthase, pyridoxin 21.3 39 0.0016 13.9 3.0 143 160-316 115-260 (260) 250 3bjs_A Mandelate racemase/muco 21.2 39 0.0017 13.9 6.6 63 60-137 179-242 (428) 251 1w0m_A TIM, triosephosphate is 21.1 39 0.0017 13.9 6.0 21 68-89 22-43 (226) 252 2og9_A Mandelate racemase/muco 20.9 40 0.0017 13.8 6.7 38 251-289 279-320 (393) 253 1xrs_A D-lysine 5,6-aminomutas 20.8 40 0.0017 13.8 3.1 70 143-220 156-249 (516) 254 3dmp_A Uracil phosphoribosyltr 20.8 40 0.0017 13.8 5.0 54 68-139 143-199 (217) 255 2aaa_A Alpha-amylase; glycosid 20.6 40 0.0017 13.8 5.3 123 66-190 41-223 (484) 256 3icg_A Endoglucanase D; cellul 20.5 40 0.0017 13.8 8.9 85 73-167 50-136 (515) 257 3iwp_A Copper homeostasis prot 20.5 41 0.0017 13.8 9.0 139 24-197 79-234 (287) 258 1tmy_A CHEY protein, TMY; chem 20.4 41 0.0017 13.8 7.3 68 232-302 27-100 (120) 259 1bwv_A Rubisco, protein (ribul 20.4 41 0.0017 13.8 9.4 192 104-324 117-336 (493) 260 2ftp_A Hydroxymethylglutaryl-C 20.0 41 0.0017 13.7 7.1 96 71-180 86-183 (302) 261 2isw_A Putative fructose-1,6-b 20.0 41 0.0017 13.7 4.3 27 62-88 23-49 (323) No 1 >1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Probab=100.00 E-value=0 Score=1117.13 Aligned_cols=328 Identities=47% Similarity=0.830 Sum_probs=322.3 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 55788858563128988999863477888773311666758988110488878632889999999999998889367633 Q gi|255764463|r 9 HKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIF 88 (337) Q Consensus 9 ~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LF 88 (337) ++.||++||||||+|+|+|+||+||+|+++|||||+||+||.+.++||+||||+||||+|.|++++++++++||++|+|| T Consensus 7 ~~~fP~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~Eg~~~kepI~SMPGv~R~Sid~L~~eie~~~~lGI~aV~LF 86 (337) T 1w5q_A 7 NRAYPYTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGIPALALF 86 (337) T ss_dssp CCCTTTCCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEEEECCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEE T ss_conf 78899877665689878999984378888996620599408998335689998436689999999999998799789980 Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 025633455445421576537999999999730144798613327100114310013-6544628999999999999996 Q gi|255764463|r 89 PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC-DGEIVNDETIELISHAAVIQAD 167 (337) Q Consensus 89 p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~-~g~IdND~Tl~~L~k~Al~~A~ 167 (337) |++++++||+.|++|||+||++|||||.||+.||||+|||||||||||+||||||++ +|.||||+|+++|+|||++||+ T Consensus 87 gvi~~~~Kd~~gs~A~n~~~lv~raIr~iK~~fp~l~vi~DVcLc~YT~hGHcGil~~~g~idND~Tl~~L~~~Al~~A~ 166 (337) T 1w5q_A 87 PVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAE 166 (337) T ss_dssp ECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 41146667888501069632899999999986064699975203567786776622688866568999999999999998 Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHH Q ss_conf 2897352466767799999999987788577300336664354301016753102446-777744315721147889888 Q gi|255764463|r 168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL-KGDKKTYYLDPANVQEAIREA 246 (337) Q Consensus 168 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~-~gdr~sYQmd~~n~~eA~~e~ 246 (337) ||||+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+| +|||+||||||+|++||++|+ T Consensus 167 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaKfaS~fYGPFRdA~~S~p~~~~gdr~~YQmd~~n~~eAl~e~ 246 (337) T 1w5q_A 167 AGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDEALHEV 246 (337) T ss_dssp TTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBCTTCSHHHHHHH T ss_pred HCCCEECCHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHH T ss_conf 17980441311466899999999976997762012356664631135788742765557888226636998989999999 Q ss_pred HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH Q ss_conf 87664089879955311458999999962499899993461899999999888978899999999999772699998201 Q gi|255764463|r 247 SIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF 326 (337) Q Consensus 247 ~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~ 326 (337) .+|++||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|+ ++++|+|++|||||||+||||| T Consensus 247 ~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~Pv~aYqVSGEYamik~a~~~g~~~~-~~~~E~l~~~kRAGAd~IitY~ 325 (337) T 1w5q_A 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE-SVILESLTAFKRAGADGILTYF 325 (337) T ss_dssp HHHHHTTCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSCT-THHHHHHHHHHHHTCSEEEETT T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCCEEEECC T ss_conf 851753987799626515899999999726998799976199999999998699507-5999999999865998998700 Q ss_pred HHHHHHHHHCC Q ss_conf 89999998509 Q gi|255764463|r 327 AMEAARILTHS 337 (337) Q Consensus 327 A~~~a~~L~~~ 337 (337) |+++|+||++. T Consensus 326 A~~~a~~L~~~ 336 (337) T 1w5q_A 326 AKQAAEQLRRG 336 (337) T ss_dssp HHHHHHHHHC- T ss_pred HHHHHHHHHCC T ss_conf 99999998567 No 2 >3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Probab=100.00 E-value=0 Score=1103.96 Aligned_cols=327 Identities=44% Similarity=0.745 Sum_probs=319.7 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 57888585631289889998634778887733116667589881104888786328899999999999988893676330 Q gi|255764463|r 10 KICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFP 89 (337) Q Consensus 10 ~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp 89 (337) .+..++||||||+++++|+||+||+|+++|||||+||+|+ +.++||+||||+||||+|.|++++++++++||++|+||| T Consensus 20 ~l~~~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PlFV~e~-~~~~~I~sMPGi~R~Sid~L~~ei~~~~~lGI~avlLFp 98 (360) T 3obk_A 20 WLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDE-ETSVPIPSMPGQSRLSMEDLLKEVGEARSYGIKAFMLFP 98 (360) T ss_dssp ECCCSCCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEESS-SSCEECTTSTTCEEECHHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEEECC-CCEEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 4564556774679878999985279888997632399569-843445899985356899999999999988998899607 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 25633455445421576537999999999730144798613327100114310013--6544628999999999999996 Q gi|255764463|r 90 NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC--DGEIVNDETIELISHAAVIQAD 167 (337) Q Consensus 90 ~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~--~g~IdND~Tl~~L~k~Al~~A~ 167 (337) ++++++||+.|++|||+||++|||||+||++||||+|||||||||||+||||||++ +|+||||+|+++|+|||++||+ T Consensus 99 vi~~~~Kd~~Gs~A~n~~glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGil~~~~g~IdND~Tl~~L~k~Als~A~ 178 (360) T 3obk_A 99 KVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLAR 178 (360) T ss_dssp ECCGGGCBSSCGGGGCTTSHHHHHHHHHHHHSTTCEEEEEECSGGGBTTCCSSCBCTTTCCBCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 76556799886724581168999999999865530200220026665888653124655824719899999999999998 Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 28973524667677999999999877885773003366643543010167531024467777443157211478898888 Q gi|255764463|r 168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREAS 247 (337) Q Consensus 168 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~ 247 (337) ||||+|||||||||||++||++||++||.+|+|||||+||||+||||||||++|+|.|.+||+||||||+|++||+||+. T Consensus 179 AGADiVAPSDMMDGrV~aIR~aLd~~g~~~v~ImSYsaKfaS~fYGPFRdA~~S~p~~g~drksYQmd~~n~~eA~re~~ 258 (360) T 3obk_A 179 AGADMVCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREAE 258 (360) T ss_dssp HTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCSTTHHHHHHHTCCCSTTCCSTTTSBCTTCSHHHHHHHH T ss_pred HCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHH T ss_conf 47982563301463999999999977998860542034552422345789851665568887411349888899999999 Q ss_pred HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 76640898799553114589999999624998999934618999999998889788999999999997726999982018 Q gi|255764463|r 248 IDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA 327 (337) Q Consensus 248 ~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A 327 (337) +|++||||||||||||||||||+++|+++++|++||||||||||||+|+++||+|++++++|+|++|||||||+|||||| T Consensus 259 ~D~~EGAD~lMVKPal~yLDii~~~k~~~~~Pv~aYqVSGEYamikaaa~~g~~d~~~~~~E~l~~~kRAGAd~IiTY~A 338 (360) T 3obk_A 259 ADASEGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVLKSFRRAGADAVATYYA 338 (360) T ss_dssp HHHHTTCSEEEEESSGGGHHHHHHHHHHCSSCEEEEECHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSEEEETTH T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHH T ss_conf 87864987799626516899999999854998799973469999999998699757889999999998639989976009 Q ss_pred HHHHHHHHCC Q ss_conf 9999998509 Q gi|255764463|r 328 MEAARILTHS 337 (337) Q Consensus 328 ~~~a~~L~~~ 337 (337) +|+|+||+|. T Consensus 339 ~~~a~~L~~~ 348 (360) T 3obk_A 339 KEAAKWMVED 348 (360) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999998863 No 3 >1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Probab=100.00 E-value=0 Score=1104.17 Aligned_cols=323 Identities=49% Similarity=0.860 Sum_probs=316.6 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 57888585631289889998634778887733116667589881104888786328899999999999988893676330 Q gi|255764463|r 10 KICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFP 89 (337) Q Consensus 10 ~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp 89 (337) .+.+.+||||||+|+|+|+||+||+|+++|||||+||+||.+.++||+||||++|||+|.|++++++++++||++|+||| T Consensus 6 ~~~~~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~~~~I~SMPGi~R~SiD~L~~~ie~~~~lGI~av~LFp 85 (328) T 1w1z_A 6 LLNIVHRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEECKELYDLGIQGIDLFG 85 (328) T ss_dssp ----CCCGGGGTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEEETTEEEEEEEEHHHHHHHHHHHHHHTCCEEEEEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCEEEEEEEECCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 36435567646798799999870798889966206995289972356899983466799999999999986998899972 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 25633455445421576537999999999730144798613327100114310013654462899999999999999628 Q gi|255764463|r 90 NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG 169 (337) Q Consensus 90 ~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG 169 (337) ++ ++||+.|++|||+||++|||||.||++||||+|||||||||||+||||||+++|+||||+|++.|+|||++||+|| T Consensus 86 v~--~~K~~~gs~A~n~d~lv~rAIr~iK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~idND~Tl~~L~k~Al~~A~AG 163 (328) T 1w1z_A 86 IP--EQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVKDGIILNDETVEVLQKMAVSHAEAG 163 (328) T ss_dssp CC--SSCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSEESSSCEEHHHHHHHHHHHHHHHHHHT T ss_pred CC--CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 45--5556785202697537999999998548985898622015676888715478997856999999999999999817 Q ss_pred CCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 97352466767799999999987788577300336664354301016753102446777744315721147889888876 Q gi|255764463|r 170 ADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASID 249 (337) Q Consensus 170 aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D 249 (337) ||+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+| |||+||||||+|++||+||+++| T Consensus 164 aDiVAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaK~aS~fYgPFRdA~~S~p~~-gdr~sYQmd~~n~~eA~~e~~~D 242 (328) T 1w1z_A 164 ADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQF-GDKSTYQMNPANTEEAMKEVELD 242 (328) T ss_dssp CSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCTTCHHHHHHTTCCCCC-SCSTTTSBCTTCSHHHHHHHHHH T ss_pred CCCCCCHHCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHC-CCCCEEECCCCCHHHHHHHHHHH T ss_conf 98145131145589999999997798666122134555342023488986314304-88651007999879999986332 Q ss_pred HHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHH Q ss_conf 64089879955311458999999962499899993461899999999888978899999999999772699998201899 Q gi|255764463|r 250 IQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAME 329 (337) Q Consensus 250 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~ 329 (337) ++|||||||||||+||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||+| T Consensus 243 ~~EGAD~lmVKPa~~yLDii~~~k~~~~~Pv~aYqVSGEYamik~aa~~G~~d~~~~~~Esl~~~kRAGAd~IitY~A~~ 322 (328) T 1w1z_A 243 IVEGADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIFTYYAKE 322 (328) T ss_dssp HHHTCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSEEEETTHHH T ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHH T ss_conf 44298779851761388999999984599879997346999999999869975888999999999971999997601999 Q ss_pred HHHHHH Q ss_conf 999985 Q gi|255764463|r 330 AARILT 335 (337) Q Consensus 330 ~a~~L~ 335 (337) +|+||+ T Consensus 323 ~a~~Lk 328 (328) T 1w1z_A 323 AAKKLR 328 (328) T ss_dssp HHHHHC T ss_pred HHHHHC T ss_conf 998629 No 4 >1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Probab=100.00 E-value=0 Score=1084.78 Aligned_cols=318 Identities=43% Similarity=0.685 Sum_probs=311.6 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 88585631289889998634778887733116667589881104888786328899999999999988893676330256 Q gi|255764463|r 13 CHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIP 92 (337) Q Consensus 13 p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~ 92 (337) ..+||||||+|+|+|+||+||+|+++|||||+||+||.+.++||+||||+||||+|.|++++++++++||++|+|||+ | T Consensus 3 ~~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PlFV~eg~~~~e~I~SMPGi~R~Sid~l~~~i~~~~~lGI~av~LFpv-~ 81 (323) T 1l6s_A 3 LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGI-S 81 (323) T ss_dssp CSCCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEETTCSSCEECTTSTTCEEEEGGGHHHHHHHHHHHTCCEEEEEEE-C T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEEEECCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCCEEEECC-C T ss_conf 141666358987999998607988899553149921899833468999966758999999999999779760454354-6 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 33455445421576537999999999730144798613327100114310013654462899999999999999628973 Q gi|255764463|r 93 MDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI 172 (337) Q Consensus 93 ~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi 172 (337) ++||+.|++|||+||++|||||.||+.||||+|||||||||||+||||||++++.||||+|+++|+||||+||+||||+ T Consensus 82 -~~Kd~~GseA~n~~glv~rair~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~~~idND~Tl~~L~k~Al~~A~AGaDi 160 (323) T 1l6s_A 82 -HHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADF 160 (323) T ss_dssp -SSCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBCSSSBCHHHHHHHHHHHHHHHHHHTCSE T ss_pred -CCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf -7789974241498658999999998408977387414326676888741201677575899999999999999817981 Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 52466767799999999987788577300336664354301016753102446777744315721147889888876640 Q gi|255764463|r 173 IAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE 252 (337) Q Consensus 173 vAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E 252 (337) |||||||||||++||++||++||++|+|||||+||||+||||||||++|+| + |||+||||||+|++||++|+.+|++| T Consensus 161 VAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaKyaS~fYGPFRdA~~S~~-~-gdr~sYQmd~~n~~eA~~e~~~D~~E 238 (323) T 1l6s_A 161 IAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSAL-K-GDRKSYQMNPMNRREAIRESLLDEAQ 238 (323) T ss_dssp EEECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCCHHHHHHHTCCC-S-SCCTTTSBCTTCHHHHHHHHHHHHHT T ss_pred CCCHHCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHHCCCC-C-CCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 251310565999999999976986751321023434513452778844878-8-99852105877668999986031442 Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHH Q ss_conf 89879955311458999999962499899993461899999999888978899999999999772699998201899999 Q gi|255764463|r 253 SADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAAR 332 (337) Q Consensus 253 GAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~ 332 (337) |||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+ T Consensus 239 GAD~lmVKPa~~yLDii~~~k~~~~~Pv~aYqVSGEYamikaaa~~g~~d~~~~~~E~l~~~kRAGAd~IiTY~A~~~a~ 318 (323) T 1l6s_A 239 GADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAE 318 (323) T ss_dssp TCSBEEEESCTTCHHHHHHHHTTCSSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEETTHHHHHH T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHH T ss_conf 98658840441378899999982699889997528999999999869975676999999999862999998707899999 Q ss_pred --HH Q ss_conf --98 Q gi|255764463|r 333 --IL 334 (337) Q Consensus 333 --~L 334 (337) || T Consensus 319 ~~~~ 322 (323) T 1l6s_A 319 KKIL 322 (323) T ss_dssp TTSC T ss_pred HHHC T ss_conf 8740 No 5 >1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Probab=100.00 E-value=0 Score=1068.73 Aligned_cols=328 Identities=32% Similarity=0.521 Sum_probs=314.9 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 55788858563128988999863477888773311666758988110488878632889999999999998889367633 Q gi|255764463|r 9 HKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIF 88 (337) Q Consensus 9 ~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LF 88 (337) .....++++|+.+.|+++|+||+||+|+++|||||+||+||.+.++||+||||++|||+|.|++++++++++||++|+|| T Consensus 10 ~~~~~~~~l~~~~~n~~lR~lv~Et~Ls~~dLI~PiFV~eg~~~~~~I~sMPGv~R~sid~L~~~i~~~~~lGI~av~LF 89 (342) T 1h7n_A 10 EPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAKGLRSVILF 89 (342) T ss_dssp CCCCGGGCCGGGSSSHHHHHHTCSSCCCGGGEEEEEEEESSTTCEEECTTSTTCEEECHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCHHHHHHCCCCCCHHHHHHHHCCCCCHHHCEEEEEEECCCCCCEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEC T ss_conf 86335687606899989999986089888996620398108998423799998633289999999999998699979967 Q ss_pred EC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHH Q ss_conf 02-56334554454215765379999999997301447986133271001143100136-54462899999999999999 Q gi|255764463|r 89 PN-IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD-GEIVNDETIELISHAAVIQA 166 (337) Q Consensus 89 p~-I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~-g~IdND~Tl~~L~k~Al~~A 166 (337) |+ +.+++||+.|++|||++|+||||||+||+.||||+|||||||||||+||||||+++ +.||||+|+++|+|||++|| T Consensus 90 gvp~~~~~Kd~~gseA~n~~~lv~rAIr~IK~~fpdl~vi~DVcLcpYT~hGHcGIl~~~~~idnd~Tl~~L~k~Al~~A 169 (342) T 1h7n_A 90 GVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYA 169 (342) T ss_dssp EECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSSBCHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 98887766898772321874589999999996589867985310155668787556358971041789999999999999 Q ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 6289735246676779999999998778-857730033666435430101675310244677774431572114788988 Q gi|255764463|r 167 DAGADIIAPSEMMDGRVQEIRKKLDSHG-HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIRE 245 (337) Q Consensus 167 ~AGaDivAPSdMMDGrV~aIR~~Ld~~g-~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e 245 (337) +||||||||||||||||++||++||+++ |.+|+|||||+||||+||||||||++|+|+| ||||||||||+|++||+|| T Consensus 170 ~AGaDiVAPSDMMDGrV~aIR~~Ld~~~~~~~~~ImSYsaKfaS~fYGPFRdA~~S~p~~-gdrktYQmd~~n~~eA~re 248 (342) T 1h7n_A 170 KAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSN-GDRKCYQLPPAGRGLARRA 248 (342) T ss_dssp HHTCSEEEECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBCSSCCHHHHHHHTCCCSS-SCSTTTSBCTTCHHHHHHH T ss_pred HCCCCEECHHHCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHHHCCCCC-CCCCEEECCCCCHHHHHHH T ss_conf 728981432412678499999999973887740210288888876112589986220138-9864221799988999999 Q ss_pred HHHHHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 8876640898799553114589999999624-998999934618999999998889788999999999997726999982 Q gi|255764463|r 246 ASIDIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 246 ~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337) +++|++||||||||||||||||||+++|++| ++|++||||||||||||+|+++||+|++++++|+|++|||||||+||| T Consensus 249 ~~~D~~EGAD~lMVKPa~~yLDiI~~~k~~~~~~Pv~aYqVSGEYamikaaa~~g~~d~~~~~~E~l~~~kRAGAd~IiT 328 (342) T 1h7n_A 249 LERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIIT 328 (342) T ss_dssp HHHHHHTTCSEEEEESSGGGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEE T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 97537609987996177148899999997466998799974369999999998799758889999999998629989986 Q ss_pred CHHHHHHHHHHCC Q ss_conf 0189999998509 Q gi|255764463|r 325 YFAMEAARILTHS 337 (337) Q Consensus 325 Y~A~~~a~~L~~~ 337 (337) |||+++|+||+|. T Consensus 329 Y~A~~~a~~L~~~ 341 (342) T 1h7n_A 329 YLAPEFLDWLDEE 341 (342) T ss_dssp TTHHHHHHHTTC- T ss_pred CCHHHHHHHHHHC T ss_conf 0299999987423 No 6 >1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Probab=100.00 E-value=0 Score=1069.99 Aligned_cols=324 Identities=35% Similarity=0.603 Sum_probs=318.8 Q ss_pred CCCCCCCCCCCCHHHHHH-HHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 888585631289889998-6347788877331166675898811048887863288999999999999888936763302 Q gi|255764463|r 12 CCHRRMRRNRKSNWIREM-VREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPN 90 (337) Q Consensus 12 ~p~~R~RRlR~~~~iR~L-v~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~ 90 (337) .|++|+||.|.|+++|+| ++||+|+++||||||||+||++.++||+||||++|||+|.|++++++++++||++|+|||+ T Consensus 2 ~p~~~l~~~~~~~~~R~~~~~Et~Ls~sdLI~PiFV~eg~~~~e~I~SMPGv~r~sid~L~~~ie~~~~lGI~av~LF~v 81 (330) T 1pv8_A 2 QPQSVLHSGYLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIFGV 81 (330) T ss_dssp ---------CCCHHHHHHHTTTTCCCGGGEEEEEEECSCTTCEEECSSSTTCEEECHHHHHHHHHHHHHHTCCEEEEEEC T ss_pred CCCCHHHCCCCCHHHHHHHHHCCCCCHHHCEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 95313226678978874553137277899453049801899822458999975149999999999999889999999580 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 56334554454215765379999999997301447986133271001143100136-54462899999999999999628 Q gi|255764463|r 91 IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD-GEIVNDETIELISHAAVIQADAG 169 (337) Q Consensus 91 I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~-g~IdND~Tl~~L~k~Al~~A~AG 169 (337) +++++||+.|++|||+||++|||||.||++|||++|||||||||||+||||||+++ |+||||+|+++|+|||++||+|| T Consensus 82 ~~~~~KD~~gs~A~~~~~lv~rAIr~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~~~~idND~Tl~~L~k~Al~~A~AG 161 (330) T 1pv8_A 82 PSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAG 161 (330) T ss_dssp C--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC---------------CHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 76303598775224722399999999996489808997504576768887461136310174889999999999999718 Q ss_pred CCEEECCCCCCCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9735246676779999999998778857-730033666435430101675310244677774431572114788988887 Q gi|255764463|r 170 ADIIAPSEMMDGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI 248 (337) Q Consensus 170 aDivAPSdMMDGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~ 248 (337) ||+|||||||||||++||++||++||++ ++|||||+||||+||||||||++|+|+| ||||||||||+|++||+||+++ T Consensus 162 aDiVAPSdMMDGrV~aIR~aLd~~g~~~~v~ImSYsaKyaS~fYgPFRdA~~s~p~~-gdrk~YQmd~~n~~eAl~e~~~ 240 (330) T 1pv8_A 162 CQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAF-GDRRCYQLPPGARGLALRAVDR 240 (330) T ss_dssp CSEEEECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGHHHHHCC--------------CCTTCHHHHHHHHHH T ss_pred CCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEECCCCCHHHHHHHHHH T ss_conf 884511045678999999999977995530232166654056541468872467567-8841443598669999999998 Q ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 6640898799553114589999999624-998999934618999999998889788999999999997726999982018 Q gi|255764463|r 249 DIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA 327 (337) Q Consensus 249 D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A 327 (337) |++||||||||||||||||||+++|++| ++|++||||||||||||+|+++||+|++++++|+|++|||||||+|||||| T Consensus 241 D~~EGAD~~mVKPa~~yLDii~~~k~~~~~~Pv~aYqVSGEYami~aaa~~g~~d~~~~~~E~l~~~kRAGAd~IiTY~A 320 (330) T 1pv8_A 241 DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYT 320 (330) T ss_dssp HHHTTCSBEEEESCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSEEEETTH T ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHH T ss_conf 87569877996264078999999997478998799976089999999998799857779999999998639989987019 Q ss_pred HHHHHHHHC Q ss_conf 999999850 Q gi|255764463|r 328 MEAARILTH 336 (337) Q Consensus 328 ~~~a~~L~~ 336 (337) +++|+||+| T Consensus 321 ~~~a~~L~~ 329 (330) T 1pv8_A 321 PQLLQWLKE 329 (330) T ss_dssp HHHHHHTTT T ss_pred HHHHHHHHC T ss_conf 999998732 No 7 >1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A Probab=96.65 E-value=0.012 Score=37.63 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=105.8 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCEEE--------CCCCCC Q ss_conf 999999997301447986133271001143100136--5446289999999999999962897352--------466767 Q gi|255764463|r 111 NEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD--GEIVNDETIELISHAAVIQADAGADIIA--------PSEMMD 180 (337) Q Consensus 111 ~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~--g~IdND~Tl~~L~k~Al~~A~AGaDivA--------PSdMMD 180 (337) ...+|++-..+.--++.+ |++- | -|-+.|++++..++..|+|+|- |-.=+. T Consensus 152 i~G~R~~lgv~~RPL~~~--------------iiKPk~G-----Lsp~~~a~~~~~~~~GGvDfIKDDE~l~~~~~~p~~ 212 (435) T 1ykw_A 152 IEGLRDILNAHGRPIFFG--------------VVKPNIG-----LSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIE 212 (435) T ss_dssp HHHHHHHHTCCSSCEEEE--------------ECSSCSS-----CCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHH T ss_pred HHHHHHHHCCCCCCEECC--------------CCCCCCC-----CCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHH T ss_conf 588999848899831314--------------6788767-----887898999999983487700376445797757599 Q ss_pred CHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEE Q ss_conf 79999999998778857730033666435430101675310244677774431572114-78898888766408987995 Q gi|255764463|r 181 GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANV-QEAIREASIDIQESADMLLV 259 (337) Q Consensus 181 GrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~-~eA~~e~~~D~~EGAD~lMV 259 (337) -||.++.+++++. ..-.|.++-|-.+.... .|-++.+..=.+.|++.+|| T Consensus 213 eRv~~~~~a~~~a-----------------------------~~~TG~~~lya~NiT~~~~em~~ra~~~~~~G~~~vmv 263 (435) T 1ykw_A 213 ERAAHLGKARRKA-----------------------------EAETGEPKIYLANITDEVDSLMEKHDVAVRNGANALLI 263 (435) T ss_dssp HHHHHHHHHHHHH-----------------------------HHHHSSCCEEEEECCCCGGGHHHHHHHHHHHTCCEEEE T ss_pred HHHHHHHHHHHHH-----------------------------HHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 9999999999999-----------------------------99759755897215799999999999999819978999 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEE-EECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 53114589999999624998999-934618999999998889788999999999997726999982 Q gi|255764463|r 260 KPGLPYLDVCFRIKEKFGLPTFA-YQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 260 KPa~~yLDii~~~k~~~~~P~~a-YqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337) -|...=++.++.+++.+++|+.+ ++.+|-|+ -....|+ +.. ++ -.-.+-||||.|++ T Consensus 264 ~~~~~G~~a~~~l~~~~~lpi~aH~a~~g~~~---r~~~~Gi-s~~--vl--~kL~RLaGaD~i~~ 321 (435) T 1ykw_A 264 NALPVGLSAVRMLSNYTQVPLIGHFPFIASFS---RMEKYGI-HSK--VM--TKLQRLAGLDAVIM 321 (435) T ss_dssp EHHHHCHHHHHHHHHHCSSCEEEECTTTHHHH---CSTTSEE-CHH--HH--HHHHHHHTCSEEEE T ss_pred ECCCCCHHHHHHHHHHCCCCHHCCCCCCCCCC---CCCCCCC-CHH--HH--HHHHHHCCCCCCCC T ss_conf 46754279999998743741101313224434---6767852-599--99--99999829780345 No 8 >2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris CGA009} Probab=96.25 E-value=0.057 Score=33.09 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=100.3 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC--------CCCH Q ss_conf 99999999730144798613327100114310013654462899999999999999628973524667--------6779 Q gi|255764463|r 111 NEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEM--------MDGR 182 (337) Q Consensus 111 ~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM--------MDGr 182 (337) ...+|++-..+.--++.+ |++-. ---|-+.+++++-.++..|+|+|-=-.+ ++-| T Consensus 172 I~G~R~~lgv~~RPL~gt--------------iiKPk---lGLsp~~~a~~~ye~~~GGvDfIKDDE~l~~q~f~p~~eR 234 (452) T 2qyg_A 172 IAGVRERLQAFDRPIFFG--------------VIKPN---IGLPPQPFAELGYQSWTGGLDIAKDDEMLADVDWCPLAER 234 (452) T ss_dssp HHHHHHHHTCCSSCEEEE--------------ECSSC---TTCCSHHHHHHHHHHHHHTCSEEECCTTCCSCTTSCHHHH T ss_pred HHHHHHHHCCCCCCEECC--------------CCCCC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 388999857899850236--------------77887---7799899999999998528980027856679787869999 Q ss_pred HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEECC Q ss_conf 99999999877885773003366643543010167531024467777443157211-47889888876640898799553 Q gi|255764463|r 183 VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPAN-VQEAIREASIDIQESADMLLVKP 261 (337) Q Consensus 183 V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n-~~eA~~e~~~D~~EGAD~lMVKP 261 (337) |.++-+++ .-+-.-.|-++-|-.+... ..+-++....=++.|+..+||-| T Consensus 235 v~~v~ea~-----------------------------~~a~~eTG~~~lya~NIT~~~~~m~~ra~~a~~~G~~avmv~~ 285 (452) T 2qyg_A 235 AALLGDAC-----------------------------RRASAETGVPKIYLANITDEVDRLTELHDVAVANGAGALLINA 285 (452) T ss_dssp HHHHHHHH-----------------------------HHHHHHHSSCCEEEEECCCCTTHHHHHHHHHHHTTCCEEEEEH T ss_pred HHHHHHHH-----------------------------HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99999999-----------------------------9999986887447402689999999999999983995899926 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 11458999999962499899993-4618999999998889788999999999997726999982 Q gi|255764463|r 262 GLPYLDVCFRIKEKFGLPTFAYQ-VSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 262 a~~yLDii~~~k~~~~~P~~aYq-VSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337) ...=++.++.+++.+++|+.+.- .+|-|. -....|+ +.. ++ -.-.+-||||.|++ T Consensus 286 ~~~G~~a~~~lr~~~~lpi~aH~a~~ga~~---r~~~~Gi-s~~--vl--~KL~RLaGaD~i~~ 341 (452) T 2qyg_A 286 MPVGLSAVRMLRKHATVPLIAHFPFIAAFS---RLANYGI-HSR--VM--TRLQRLAGFDVVIM 341 (452) T ss_dssp HHHCHHHHHHHHTTCCSCEEEECTTHHHHH---SCTTSEE-CHH--HH--HHHHHHHTCSEEEE T ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCCCC---CCCCCCC-CHH--HH--HHHHHHCCCCEEEE T ss_conf 653689999998628963676256651003---6888867-399--99--99999808895441 No 9 >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Probab=95.92 E-value=0.11 Score=31.08 Aligned_cols=177 Identities=15% Similarity=0.207 Sum_probs=87.6 Q ss_pred HHHHHHHHHHCCCCEEEEEEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHC Q ss_conf 999999999888936763302-----------56334554454215765379999999997301-447986133271001 Q gi|255764463|r 70 AVEKIKQVADLGIPAIAIFPN-----------IPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTI 137 (337) Q Consensus 70 L~~eie~~~~lGI~av~LFp~-----------I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~ 137 (337) ..+.++.+.+.|.-.|-|-.. ..+.-+|+.|-.--|.--++...|++||+.+| +..|..-...++|. T Consensus 160 f~~AA~~a~~AGfDgVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~~g~~~~i~~R~~~~~~~- 238 (363) T 3l5l_A 160 FVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYD- 238 (363) T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSS- T ss_pred HHHHHHHHHHCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC- T ss_conf 9999999996296753213454313552767778998687888845606789999999998626677402105732357- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-- Q ss_conf 143100136544628999999999999996289735246676779999999998778857730033666435430101-- Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-- 215 (337) Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-- 215 (337) ..+..|++...+.+..+.++|+|++--|.-. ...+..+. +...|+.|| T Consensus 239 -----------~~~g~~~~e~~~~~~~l~~~gvD~i~vs~G~--------------~~~~~~~~-----~~~~~~~~~a~ 288 (363) T 3l5l_A 239 -----------GRDEQTLEESIELARRFKAGGLDLLSVSVGF--------------TIPDTNIP-----WGPAFMGPIAE 288 (363) T ss_dssp -----------SCHHHHHHHHHHHHHHHHHTTCCEEEEEECC--------------CSSCCCCC-----CCTTTTHHHHH T ss_pred -----------CCCCCCHHHHHHHHHHHHHHCCCEEEEECCC--------------CCCCCCCC-----CCCCCHHHHHH T ss_conf -----------8898648899999999986187679985473--------------22676666-----67420057999 Q ss_pred --HHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEE-ECCCHHHHHHHHHHHHHCCCCEEEEECCHHH Q ss_conf --6753102446-7777443157211478898888766408-98799-5531145899999996249989999346189 Q gi|255764463|r 216 --RDAISTRDLL-KGDKKTYYLDPANVQEAIREASIDIQES-ADMLL-VKPGLPYLDVCFRIKEKFGLPTFAYQVSGEY 289 (337) Q Consensus 216 --RdA~~S~p~~-~gdr~sYQmd~~n~~eA~~e~~~D~~EG-AD~lM-VKPa~~yLDii~~~k~~~~~P~~aYqVSGEY 289 (337) |.++ +.|-. .|.- .+. ..++.-++|| ||+|+ -+|.+.-=|.+.++++...+.-.-|.++.-| T Consensus 289 ~ik~~~-~~pvi~~G~i-------~~~----~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~~l~~~~~~~~~P~~~ 355 (363) T 3l5l_A 289 RVRREA-KLPVTSAWGF-------GTP----QLAEAALQANQLDLVSVGRAHLADPHWAYFAAKELGVEKASWTLPAPY 355 (363) T ss_dssp HHHHHH-TCCEEECSST-------TSH----HHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHHHTTCTTGGGGSCHHH T ss_pred HHHHHC-CCEEEEECCC-------CCH----HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHH T ss_conf 999865-9308997786-------999----999999987995234751998869149999997689986678788257 No 10 >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate ligand, isomerase; HET: AKG; 1.65A {Deinococcus ficus} Probab=95.89 E-value=0.12 Score=30.91 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=78.9 Q ss_pred HHHHCCCCEEECCC-------------CCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCC Q ss_conf 99962897352466-------------76779999999998778857730033666435430101675310244677774 Q gi|255764463|r 164 IQADAGADIIAPSE-------------MMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKK 230 (337) Q Consensus 164 ~~A~AGaDivAPSd-------------MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~ 230 (337) .+.++||.-|---| -|=.||+++|.+.+..+. ++.|+.-+--|- .| .+.+ T Consensus 100 ~~~~aG~agi~iEDq~~~~~~~l~~~~e~~~kI~a~~~a~~~~~~-~~~i~ARTD~~~---~g------------~~~~- 162 (275) T 2ze3_A 100 HFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGV-PVFLNARTDTFL---KG------------HGAT- 162 (275) T ss_dssp HHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECCTTT---TT------------CSSS- T ss_pred HHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEEECCHHHH---CC------------CCCH- T ss_conf 999826868976386688887766799999999999999873588-416885022553---14------------5530- Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC-------- Q ss_conf 431572114788988887664089879955311458999999962499899993461899999999888978-------- Q gi|255764463|r 231 TYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN-------- 302 (337) Q Consensus 231 sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d-------- 302 (337) ++....|||+-+....+-|||++.+ |+....+.|+++.+..+.|+-...+.|-- .+.-..+.|+-- T Consensus 163 ----~~~g~deai~Ra~ay~eAGAD~ifi-~~~~~~e~i~~i~~~~~~Plnv~~~~~~~-~~~eL~~lG~~~v~~~~~~~ 236 (275) T 2ze3_A 163 ----DEERLAETVRRGQAYADAGADGIFV-PLALQSQDIRALADALRVPLNVMAFPGSP-VPRALLDAGAARVSFGQSLM 236 (275) T ss_dssp ----HHHHHHHHHHHHHHHHHTTCSEEEC-TTCCCHHHHHHHHHHCSSCEEEECCTTSC-CHHHHHHTTCSEEECTTHHH T ss_pred ----HHHHHHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHCCCCEEEECHHHH T ss_conf ----1342899999999999749999983-68899999999998669997998369999-99999984997999828999 Q ss_pred --HHHHHHHHHHHHHHHCC Q ss_conf --89999999999977269 Q gi|255764463|r 303 --KNDAMMESLLAFKRAGC 319 (337) Q Consensus 303 --~~~~~~E~l~~~kRAGA 319 (337) --.++.+.+..++..|. T Consensus 237 ~aa~~a~~~~~~~l~~~g~ 255 (275) T 2ze3_A 237 LATLGLVQRMAAELHAAEQ 255 (275) T ss_dssp HHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999985599 No 11 >3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A* Probab=95.72 E-value=0.05 Score=33.47 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=108.5 Q ss_pred CCCHHHHHHHHHHHHHC--CC--EEEECCCCCH-HH------CCCCCCCCC-----CC----CC---CHHHHHHHHHHHH Q ss_conf 65379999999997301--44--7986133271-00------114310013-----65----44---6289999999999 Q gi|255764463|r 106 PDNLINEGICAIKKNIP--NI--GIITDVALDP-FT------IHGHDGILC-----DG----EI---VNDETIELISHAA 162 (337) Q Consensus 106 ~dglv~rAIr~IK~~fp--dl--~vi~DVcLc~-YT------~hGHcGi~~-----~g----~I---dND~Tl~~L~k~A 162 (337) +.++-+-.-..+-+.|. ++ +-+.|+-|-+ |. .+|-.|+=+ ++ -| .---|-+.+++++ T Consensus 98 ~~~l~~llt~i~GNv~~~~~v~~lrL~Di~lP~~~~~~f~GP~fGI~G~R~~lgv~~RPLlgtiiKPk~GLsp~~~a~~~ 177 (444) T 3kdn_A 98 EANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLA 177 (444) T ss_dssp TTCHHHHHHHHTTGGGGBTTEEEEEEEEEECCHHHHTTCCCCSSHHHHHHHHHTCCSSCEEEECCSSSSCCCHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHH T ss_conf 77788999999600257764554179775189999747899998768899984888884357755676689989999999 Q ss_pred HHHHHCCCCEEEC--------CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC Q ss_conf 9999628973524--------66767799999999987788577300336664354301016753102446777744315 Q gi|255764463|r 163 VIQADAGADIIAP--------SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYL 234 (337) Q Consensus 163 l~~A~AGaDivAP--------SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQm 234 (337) -.++..|.|+|-= -.=++-||.++.++++ -+-.-.|-|+-|-. T Consensus 178 ye~~~GGvDfIKDDE~l~~q~~~p~~eRv~~~~~ai~-----------------------------~a~~eTG~~~~Ya~ 228 (444) T 3kdn_A 178 YDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIID-----------------------------KVENETGEKKTWFA 228 (444) T ss_dssp HHHHHTTCCEEECCTTCCSCTTSCHHHHHHHHHHHHH-----------------------------HHHHHHCCCCEEEE T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------------------------HHHHHHCCCCEEEE T ss_conf 9997168774537734678765738999999999999-----------------------------99998688765886 Q ss_pred CCCH-HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 7211-478898888766408987995531145899999996---249989999346189999999988897889999999 Q gi|255764463|r 235 DPAN-VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310 (337) Q Consensus 235 d~~n-~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~---~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~ 310 (337) +... ..|-++.+..=.+.|+..+||-|...=++.++.+++ .+.+|+ -+|-+|-=++. .....| ++. .+ - T Consensus 229 NIT~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~al~~lr~~~~~~~l~I-h~HrA~~ga~~-r~~~~G-is~-~v---l 301 (444) T 3kdn_A 229 NITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAI-HGHRAMHAAFT-RNPYHG-ISM-FV---L 301 (444) T ss_dssp ECCSSHHHHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHHHHHTCEE-EEECTTTHHHH-SCTTSE-ECH-HH---H T ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEE-EEECCCCEEEE-CCCCCC-CCH-HH---H T ss_conf 14797789999999999749967999605677079999999721169558-85046650110-387776-049-99---9 Q ss_pred HHHHHHHCCCEEEECH Q ss_conf 9999772699998201 Q gi|255764463|r 311 LLAFKRAGCDGIFTYF 326 (337) Q Consensus 311 l~~~kRAGAd~IitY~ 326 (337) ..-.+++|+|.|.+.- T Consensus 302 ~kl~Rl~G~D~ih~~~ 317 (444) T 3kdn_A 302 AKLYRLIGIDQLHVGT 317 (444) T ss_dssp HHHHHHHTCSEEECCC T ss_pred HHHHHHHCCCEEECCC T ss_conf 9999984858266057 No 12 >1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N- methylmethionine, post-translational modification; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* 8ruc_A* 1upm_B* ... Probab=94.89 E-value=0.24 Score=28.81 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=111.9 Q ss_pred CCCCCHHHHHHHHHHHHHC--CC--EEEECCCCCH-HH------CCCCCCCCC-----CC----CC---CHHHHHHHHHH Q ss_conf 5765379999999997301--44--7986133271-00------114310013-----65----44---62899999999 Q gi|255764463|r 104 IDPDNLINEGICAIKKNIP--NI--GIITDVALDP-FT------IHGHDGILC-----DG----EI---VNDETIELISH 160 (337) Q Consensus 104 ~n~dglv~rAIr~IK~~fp--dl--~vi~DVcLc~-YT------~hGHcGi~~-----~g----~I---dND~Tl~~L~k 160 (337) |.++|+.+-....+-+.|. ++ +-+.|+-|-+ |. .+|-.|+=+ +. -| .--.+-+.+++ T Consensus 108 f~~~~i~~lltsi~GNvfg~~~~~~lRL~Dl~lP~~~~~~F~GP~fGI~G~R~~lgv~~RPLlgtiiKPklGLsp~~~A~ 187 (477) T 1wdd_A 108 FEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGR 187 (477) T ss_dssp SCTTCHHHHHHHHHSSGGGBTTEEEEEEEEEECCHHHHTTSCCCSSCHHHHHHHHTCCSSCEEECBCSSSSCCCHHHHHH T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHH T ss_conf 47773899999997332564414555898862899999539999986188999857888861322567665789899999 Q ss_pred HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH-------HHHCCCCCCCCCCCCC Q ss_conf 999999628973524667677999999999877885773003366643543010167-------5310244677774431 Q gi|255764463|r 161 AAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD-------AISTRDLLKGDKKTYY 233 (337) Q Consensus 161 ~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd-------A~~S~p~~~gdr~sYQ 233 (337) ++-.++..|.|+|-= .++..|-+ |-||++ |+.-+-.-.|.++.|- T Consensus 188 ~~ye~~~GGvDfIKD----------------DE~ladq~------------f~p~~eRv~~v~~av~~a~~eTG~~k~y~ 239 (477) T 1wdd_A 188 ACYECLRGGLDFTKD----------------DENVNSQP------------FMRWRDRFVFCAEAIYKSQAETGEIKGHY 239 (477) T ss_dssp HHHHHHHTTCSEEEC----------------CTTCSSBT------------TBCHHHHHHHHHHHHHHHHHHHSSCCEEE T ss_pred HHHHHHHCCCCEECC----------------CCCCCCCC------------CCCHHHHHHHHHHHHHHHHHHHCCEEEEE T ss_conf 999998268855316----------------75557988------------78579999999999999999669866998 Q ss_pred CCCCH--HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 57211--478898888766408987995531145899999996---2499899993461899999999888978899999 Q gi|255764463|r 234 LDPAN--VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMM 308 (337) Q Consensus 234 md~~n--~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~---~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~ 308 (337) .+..+ .+|-++.+..=.+.|++.+||-|...=++.++.+++ ...+|+.+ |-+|-=++-. ....| ++.. + + T Consensus 240 ~NiT~~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~a~~~L~~~~~~~~l~ih~-HrA~~ga~~r-~~~~G-is~~-v-l 314 (477) T 1wdd_A 240 LNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHI-HRAMHAVIDR-QKNHG-MHFR-V-L 314 (477) T ss_dssp EECCCSSHHHHHHHHHHHHHHTCSEEEEEHHHHCHHHHHHHHHHHHHHTCEEEE-ECTTHHHHHS-CSSSE-ECHH-H-H T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCCCCC-CCCCC-CCHH-H-H T ss_conf 268889999999999999973997898604455188999999976662916887-6775512456-87776-5599-9-9 Q ss_pred HHHHHHHHHCCCEEEE Q ss_conf 9999997726999982 Q gi|255764463|r 309 ESLLAFKRAGCDGIFT 324 (337) Q Consensus 309 E~l~~~kRAGAd~Iit 324 (337) ..-.+=||||.|++ T Consensus 315 --~Kl~RLaGaD~ih~ 328 (477) T 1wdd_A 315 --AKALRMSGGDHIHA 328 (477) T ss_dssp --HHHHHHHCCSEEEC T ss_pred --HHHHHHCCCCCCCC T ss_conf --99999718782145 No 13 >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Probab=94.83 E-value=0.22 Score=29.08 Aligned_cols=138 Identities=12% Similarity=0.194 Sum_probs=56.9 Q ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCH Q ss_conf 48887-86328899999999999988893676330256334554454215765379999999997301447986133271 Q gi|255764463|r 56 INSMP-DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 (337) Q Consensus 56 I~SMP-Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~ 134 (337) |..|| |-|+-+.+.+++....+.+.|-.+|-+=+.. -+...|+.|.+. .|-|++-+-|-| T Consensus 82 i~DmPf~sy~~~~~~~~~~A~~l~~~gadavk~eg~~-----------------~~~~~i~~l~~~--gIPV~gHiGL~P 142 (275) T 1o66_A 82 VSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGV-----------------WMAETTEFLQMR--GIPVCAHIGLTP 142 (275) T ss_dssp EEECCTTSSSSCHHHHHHHHHHHHHTTCSEEEEECSG-----------------GGHHHHHHHHHT--TCCEEEEEESCG T ss_pred EECCCHHHCCCHHHHHHHHHHHHHHCCCCCEECCCHH-----------------HHHHHHHHHHHC--CCCEEEECCCCC T ss_conf 9467701022539999999999986485511325506-----------------589999999987--996687404675 Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECH-HHHHHHHHHC Q ss_conf 001143100136544628999999999999996289735246676779999999998778857730033-6664354301 Q gi|255764463|r 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPY-VAKFNSSFYG 213 (337) Q Consensus 135 YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsY-saKfaS~fYg 213 (337) .+.+---|.-..|+- .++ ..|-+.|..+-+|||..|--..+-.---+.|.+. .++++.+. |.+++..=+= T Consensus 143 q~~~~~GG~r~~gk~-~e~--~~l~~~ak~lE~AGa~aivlE~Vp~eva~~It~~------l~IPtIGIGaG~~cDGQvL 213 (275) T 1o66_A 143 QSVFAFGGYKVQGRG-GKA--QALLNDAKAHDDAGAAVVLMECVLAELAKKVTET------VSCPTIGIGAGADCDGQVL 213 (275) T ss_dssp GGTTC------------CH--HHHHHHHHHHHHTTCSEEEEESCCHHHHHHHHHH------CSSCEEEESSCSCSSEEEE T ss_pred EEEECCCCEECCCCH-HHH--HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH------CCCCEEECCCCCCCCEEEE T ss_conf 254405862214641-567--8999999999966762664103647789999853------5765653577998877878 Q ss_pred CHHHHHHC Q ss_conf 01675310 Q gi|255764463|r 214 PYRDAIST 221 (337) Q Consensus 214 PFRdA~~S 221 (337) =+-|.+|- T Consensus 214 v~~DiLG~ 221 (275) T 1o66_A 214 VMHDMLGI 221 (275) T ss_dssp CHHHHTTC T ss_pred EHHHHHCC T ss_conf 59965288 No 14 >2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A Probab=94.70 E-value=0.1 Score=31.37 Aligned_cols=187 Identities=16% Similarity=0.187 Sum_probs=114.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CC--EEEECCCCCH-HHC------CCCCCCCC-----CC----CC---CHHHHHHHH Q ss_conf 215765379999999997301--44--7986133271-001------14310013-----65----44---628999999 Q gi|255764463|r 102 HIIDPDNLINEGICAIKKNIP--NI--GIITDVALDP-FTI------HGHDGILC-----DG----EI---VNDETIELI 158 (337) Q Consensus 102 eA~n~dglv~rAIr~IK~~fp--dl--~vi~DVcLc~-YT~------hGHcGi~~-----~g----~I---dND~Tl~~L 158 (337) +.|.++|+-+-..-.+-+.|. .+ +-+.|+-|-+ |.. .|-.|+=+ +. -| .---|.+.+ T Consensus 91 ~~f~~~~l~~lL~~i~Gn~~~~~~v~~iRL~Di~lP~~~~~~f~GP~fGi~G~R~~lgv~~RPL~gtiiKPk~GLsp~~~ 170 (430) T 2d69_A 91 TLFEEGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEY 170 (430) T ss_dssp GGSCTTCHHHHHHHHTTGGGGCTTEEEEEEEEEECCHHHHTTCCCCSSHHHHHHHHHTCCSSCEEEECCSSSSCCCHHHH T ss_pred HHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH T ss_conf 87688858899999987056654233478961358999984689998676899998489888425414578768897999 Q ss_pred HHHHHHHHHCCCCEEE--------CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCC Q ss_conf 9999999962897352--------46676779999999998778857730033666435430101675310244677774 Q gi|255764463|r 159 SHAAVIQADAGADIIA--------PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKK 230 (337) Q Consensus 159 ~k~Al~~A~AGaDivA--------PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~ 230 (337) ++++-.++..|+|+|- |-.=+.-||.++.++++.. -.-.|.|+ T Consensus 171 a~~~~~~~~GGvD~IKDDE~l~d~~~~p~~eRv~~v~~ai~~a-----------------------------~~eTG~~~ 221 (430) T 2d69_A 171 AEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRV-----------------------------EAETGETK 221 (430) T ss_dssp HHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHH-----------------------------HHHHSSCC T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----------------------------HHHHCCCC T ss_conf 9999999814877245776678987676899999999999999-----------------------------99768800 Q ss_pred CCCCCCCH-HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHCCCCCHHHH Q ss_conf 43157211-4788988887664089879955311458999999962---4998999934618999999998889788999 Q gi|255764463|r 231 TYYLDPAN-VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK---FGLPTFAYQVSGEYAMIKAASLQGWINKNDA 306 (337) Q Consensus 231 sYQmd~~n-~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~---~~~P~~aYqVSGEYami~~a~~~g~~d~~~~ 306 (337) -|-.+... ..|-++.++.=.+.|++.+||-|...-++.++.+++. +.+|+ -+|-+|--++-. .-..|+ +. . T Consensus 222 ~Ya~NIT~~~~em~~ra~~~~~~G~~~vmv~~~~~G~~al~~lr~~~~~~~l~I-haHra~~ga~tr-~~~~Gi-s~--~ 296 (430) T 2d69_A 222 EYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAI-HAHRAMHAAFTR-NPRHGI-TM--L 296 (430) T ss_dssp EEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHHHHHTCEE-EEECTTTHHHHS-CTTSEE-CH--H T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEE-EECCCCCCCCCC-CCCCCC-CH--H T ss_conf 799864687556789999999759957950455562489999998666477278-753355631015-888870-79--9 Q ss_pred HHHHHHHHHHHCCCEEEE Q ss_conf 999999997726999982 Q gi|255764463|r 307 MMESLLAFKRAGCDGIFT 324 (337) Q Consensus 307 ~~E~l~~~kRAGAd~Iit 324 (337) ++ -.-.+=||||.|++ T Consensus 297 vl--~kL~RLaGaD~ih~ 312 (430) T 2d69_A 297 AL--AKAARMIGVDQIHT 312 (430) T ss_dssp HH--HHHHHHHTCSEEEC T ss_pred HH--HHHHHHCCCCEEEC T ss_conf 99--99999829883341 No 15 >3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum} Probab=94.51 E-value=0.11 Score=31.12 Aligned_cols=136 Identities=12% Similarity=0.097 Sum_probs=94.6 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEC--------CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC Q ss_conf 99999999999999628973524--------6676779999999998778857730033666435430101675310244 Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAP--------SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337) Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAP--------SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337) .|-+.+++++..++..|+|+|-= -.=+.-||.++.+++++. .. T Consensus 174 Lsp~~~a~~~~~~~~GGvD~IKDDE~l~nq~~~p~~eRv~~~~~a~~~a-----------------------------~~ 224 (432) T 3nwr_A 174 LSAAETAALVRELCEAGVDFIKDDEVCANPAHAPLAERVRAVMSEVRRY-----------------------------RE 224 (432) T ss_dssp CCHHHHHHHHHHHHHHTCSEEECCTTCSSCTTSCHHHHHHHHHHHHHHH-----------------------------HH T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----------------------------HH T ss_conf 8978989999999964688434775567976677999999999999999-----------------------------99 Q ss_pred CCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCH Q ss_conf 677774431572114-7889888876640898799553114589999999624998999934618999999998889788 Q gi|255764463|r 225 LKGDKKTYYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINK 303 (337) Q Consensus 225 ~~gdr~sYQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~ 303 (337) -.|.|+-|-.+.... .|-++.+..=.+.|++.+||-|...=++.++.+++.+.+|+ -+|-+|-.++-. ....| ++. T Consensus 225 eTG~~~lYa~NiT~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~~l~~l~~~~~i~i-H~H~ag~g~~~r-~~~~G-is~ 301 (432) T 3nwr_A 225 RSGRPVMVAFNITDDLDAMRRHAELVEREGGSCVMASINWCGFSAIQSLRRTTPLVL-HAHRNGYGMMSR-DPALG-MSF 301 (432) T ss_dssp HHSCCCEEEEECCSCHHHHHHHHHHHHHTTCCEEEEEHHHHCHHHHHHHHHHCCSEE-EEECTTTTTTTS-STTEE-ECH T ss_pred HHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEE-EECCCCCCCCCC-CCCCC-CCH T ss_conf 869874899556899999999999999809977998313331799999998589578-723342403247-98767-268 Q ss_pred HHHHHHHHHHHHHHCCCEEEE Q ss_conf 999999999997726999982 Q gi|255764463|r 304 NDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 304 ~~~~~E~l~~~kRAGAd~Iit 324 (337) . ++ -.-.+-||||.|++ T Consensus 302 ~--vl--~kL~RLaGaD~ih~ 318 (432) T 3nwr_A 302 Q--AY--QTLWRLSGVDHMHV 318 (432) T ss_dssp H--HH--HHHHHTBTCSEEEE T ss_pred H--HH--HHHHHHCCCCEEEE T ss_conf 9--99--99999829993230 No 16 >2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A Probab=94.23 E-value=0.28 Score=28.36 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=86.1 Q ss_pred HHHHHHHHHHHHHHHCCCCEEECC--------CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC Q ss_conf 999999999999996289735246--------676779999999998778857730033666435430101675310244 Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAPS--------EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337) Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAPS--------dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337) -|-+.+++++..++..|+|+|-=- .=+.-||.++.++.++ +-. T Consensus 152 Lsp~~~a~~~~~~~~GGvDfIKDDE~lan~~~~p~~eRv~~~~~ai~~-----------------------------a~~ 202 (413) T 2oem_A 152 RDLAYLTSELKKQALGGVDLVKDDEILFDSELLPFEKRITEGKAALQE-----------------------------VYE 202 (413) T ss_dssp CCHHHHHHHHHHHHHTTCSEEECCTTCCCCSSSCHHHHHHHHHHHHHH-----------------------------HHH T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------------------------HHH T ss_conf 997899999999987158832366557797657489999999999999-----------------------------999 Q ss_pred CCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEE-EECCHHHHHHHHHHHCCC Q ss_conf 67777443157211-47889888876640898799553114589999999624--998999-934618999999998889 Q gi|255764463|r 225 LKGDKKTYYLDPAN-VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF--GLPTFA-YQVSGEYAMIKAASLQGW 300 (337) Q Consensus 225 ~~gdr~sYQmd~~n-~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~--~~P~~a-YqVSGEYami~~a~~~g~ 300 (337) -.|-|+-|-.+... ..|-++.+..-.+.|+..+||-|...-++.++.++... ++|+.+ .+.+|-|.. .-..| T Consensus 203 ~TG~~~~Ya~Nit~~~~em~~ra~~~~~~G~~~~mi~~~~~G~~a~~~l~~~~~~~lpi~aH~a~~g~~~~---~~~~G- 278 (413) T 2oem_A 203 QTGKRTLYAVNLTGKTFALKDKAKRAAELGADVLLFNVFAYGLDVLQALREDEEIAVPIMAHPAFSGAVTP---SEFYG- 278 (413) T ss_dssp HHSCCCEEEEECCSCGGGHHHHHHHHHHTTCSEEEECGGGSCHHHHHHHHHCTTTCCCEEECCTTGGGTSS---CSSSS- T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCEECC---CCCCC- T ss_conf 86897459976488989999999999975997899825656489999998635458703440255300014---88886- Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 788999999999997726999982 Q gi|255764463|r 301 INKNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 301 ~d~~~~~~E~l~~~kRAGAd~Iit 324 (337) ++.. +++- .-.+-||||.|++ T Consensus 279 i~~~-v~l~--kl~RLaGaD~i~~ 299 (413) T 2oem_A 279 VAPS-LWLG--KLLRLAGADFVLF 299 (413) T ss_dssp BCHH-HHTT--HHHHHHTCSEEEE T ss_pred EEHH-HHHH--HHHHHCCCCCEEC T ss_conf 1079-9999--9999809783010 No 17 >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} Probab=94.10 E-value=0.38 Score=27.54 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=68.6 Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 99999999987788577300336664354301016753102446777744315721147889888876640898799553 Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP 261 (337) Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP 261 (337) .+..||.+++...-.+..|++-+-=+. ...-.|||+-.....+-|||+++| | T Consensus 140 ~~~ki~Aa~~a~~~~~~~I~ARtda~~---------------------------~~gl~eAi~Ra~aY~~AGAD~ifi-~ 191 (298) T 3eoo_A 140 MVDRIKAAVDARTDETFVIMARTDAAA---------------------------AEGIDAAIERAIAYVEAGADMIFP-E 191 (298) T ss_dssp HHHHHHHHHHHCSSTTSEEEEEECTHH---------------------------HHHHHHHHHHHHHHHHTTCSEEEE-C T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCC---------------------------CCCHHHHHHHHHHHHHHCCCEEEE-C T ss_conf 999999999835797548997021011---------------------------168999999999999807948960-5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCH-HHH--HHHHHHHCCC-----CC-----HHHHHHHHHHHHHHHCC Q ss_conf 11458999999962499899993461-899--9999998889-----78-----89999999999977269 Q gi|255764463|r 262 GLPYLDVCFRIKEKFGLPTFAYQVSG-EYA--MIKAASLQGW-----IN-----KNDAMMESLLAFKRAGC 319 (337) Q Consensus 262 a~~yLDii~~~k~~~~~P~~aYqVSG-EYa--mi~~a~~~g~-----~d-----~~~~~~E~l~~~kRAGA 319 (337) +..-.|.|+.+.+....|+.+-.+.| +.. -..-..+.|+ -. .-.++.+.+..+++.|- T Consensus 192 ~~~~~~~i~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~lG~~~i~~~~~~~raa~~a~~~~~~~l~~~G~ 262 (298) T 3eoo_A 192 AMKTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAYRAMNKAALNFYETVRRDGT 262 (298) T ss_dssp CCCSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHHHHHHHHHHHHHHHHHHHSS T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 88999999999986699878663467888631065899779559986129999999999999999998289 No 18 >2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis} Probab=94.09 E-value=0.35 Score=27.74 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=88.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECC--------CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC Q ss_conf 8999999999999996289735246--------67677999999999877885773003366643543010167531024 Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAPS--------EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD 223 (337) Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAPS--------dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p 223 (337) -.|.+.+++++..++..|+|+|-=- .=++-||.++.++++ -+- T Consensus 165 Glsp~~~a~~~~e~~~GGvDfIKDDE~l~~q~~~p~~eRv~~~~eai~-----------------------------~a~ 215 (425) T 2zvi_A 165 GRDLSDIKEQLRQQALGGVDLIKDDEIFFETGLAPFETRIAEGKQILK-----------------------------ETY 215 (425) T ss_dssp TCCHHHHHHHHHHHHHTTCSEEECCTTCCCSSSSCHHHHHHHHHHHHH-----------------------------HHH T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------------------------HHH T ss_conf 899899999999999607885567644579876858999999999999-----------------------------999 Q ss_pred CCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 467777443157211-4788988887664089879955311458999999962--4998999934618999999998889 Q gi|255764463|r 224 LLKGDKKTYYLDPAN-VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK--FGLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 224 ~~~gdr~sYQmd~~n-~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~--~~~P~~aYqVSGEYami~~a~~~g~ 300 (337) .-.|-|+-|-.+... ..|-++.+..=.+.|++.+||-|...-++.++.++.. +++|+. +|-+|--++.. .-..|+ T Consensus 216 ~eTG~~~~Ya~NiTg~~~em~~ra~~a~~~G~~~vmi~~~~~G~~~~~~l~~~~~~~lpIh-aHra~~ga~~~-~~~~Gi 293 (425) T 2zvi_A 216 EQTGHKTLYAVNLTGRTADLKDKARRAAELGADALLFNVFAYGLDVMQGLAEDPEIPVPIM-AHPAVSGAFTS-SPFYGF 293 (425) T ss_dssp HHHSCCCEEEEECCSCGGGHHHHHHHHHHTTCSEEEECGGGTCHHHHHHHHHCTTCCSCEE-ECCTTGGGGTS-CSSSEE T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEE-EECCCCCEEEC-CCCCCC T ss_conf 9868961587205898799999999999739973776412022889999997467895389-70143432540-777761 Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEC Q ss_conf 7889999999999977269999820 Q gi|255764463|r 301 INKNDAMMESLLAFKRAGCDGIFTY 325 (337) Q Consensus 301 ~d~~~~~~E~l~~~kRAGAd~IitY 325 (337) . . ..++- .-.+=||||.+++- T Consensus 294 ~-~-~~vl~--kL~RLaGaD~~~~~ 314 (425) T 2zvi_A 294 S-H-ALLLG--KLNRYCGADFSLFP 314 (425) T ss_dssp C-H-HHHTT--HHHHHTTCSEEEEC T ss_pred C-H-HHHHH--HHHHHCCCCEEECC T ss_conf 0-8-99999--99998097833667 No 19 >3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579} Probab=94.06 E-value=0.27 Score=28.50 Aligned_cols=139 Identities=19% Similarity=0.149 Sum_probs=86.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH-------HHHCCCC Q ss_conf 899999999999999628973524667677999999999877885773003366643543010167-------5310244 Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD-------AISTRDL 224 (337) Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd-------A~~S~p~ 224 (337) -.|-+.+++++..++..|+|+|-=- ++..|- -|-||+| |++.+-. T Consensus 152 Glsp~~~a~~~~e~~~GGvDfIKDD----------------E~la~~------------~~~p~~eRv~~v~~ai~~a~~ 203 (414) T 3fk4_A 152 GRNIGYLKTQLRDQAIGGVDIVKDD----------------EILFEN------------ALTPLTKRIVSGKEVLQSVYE 203 (414) T ss_dssp TCCHHHHHHHHHHHHHTTCSEEECC----------------TTCCSC------------SSSCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCC----------------CCCCCC------------CCCCHHHHHHHHHHHHHHHHH T ss_conf 8986688999999997078863476----------------556797------------667488899999999999999 Q ss_pred CCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHCCCC Q ss_conf 677774431572114-7889888876640898799553114589999999624--9989999346189999999988897 Q gi|255764463|r 225 LKGDKKTYYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF--GLPTFAYQVSGEYAMIKAASLQGWI 301 (337) Q Consensus 225 ~~gdr~sYQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~--~~P~~aYqVSGEYami~~a~~~g~~ 301 (337) -.|-|+-|-.+.... .|-++.+..=.+.|++.+||-|...-++.++.+++.. ++|+. +|-.|--++-. .-..|+ T Consensus 204 ~TG~k~~Ya~NiT~~~~em~~ra~~a~~~G~~~vmi~~~~~G~~~~~~l~~~~~~~lpI~-aHra~~g~~~r-~~~~Gi- 280 (414) T 3fk4_A 204 TYGHKTLYAVNLTGRTFDLKENAKRAVQAGADILLFNVFAYGLDVLQSLAEDDEIPVPIM-AHPAVSGAYSA-SKLYGV- 280 (414) T ss_dssp HHCCCCEEEEECCSCGGGHHHHHHHHHHHTCSEEEECHHHHCHHHHHHHHHCTTSCSCEE-ECCTTTHHHHS-CSSSSB- T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEE-ECCCCCCEECC-CCCCCC- T ss_conf 868965477552799899999999999859978999665350999999985678785378-51476501314-887763- Q ss_pred CHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 88999999999997726999982 Q gi|255764463|r 302 NKNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 302 d~~~~~~E~l~~~kRAGAd~Iit 324 (337) +.. +++- .-.+-||||.++. T Consensus 281 ~~~-~~~~--kl~RLaGaD~~~~ 300 (414) T 3fk4_A 281 SSP-LLLG--KLLRYAGADFSLF 300 (414) T ss_dssp CHH-HHHT--HHHHHHTCSEEEE T ss_pred CHH-HHHH--HHHHHCCCCCCCC T ss_conf 439-9999--9999717884412 No 20 >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134} Probab=93.58 E-value=0.27 Score=28.48 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=68.7 Q ss_pred HHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCC Q ss_conf 63477888773311666758988110488878632889999999999998889367633025633455-44542157653 Q gi|255764463|r 30 VREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN-NTGSHIIDPDN 108 (337) Q Consensus 30 v~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd-~~GseA~n~dg 108 (337) .-|.+|.....--|++|+--.|.-..-+++=-.-=++.+++.+++.+|++.|-..+=+-+ +| ++|..+++++ T Consensus 10 ~~~~~~~~~~M~~~~iIt~A~nGa~~tk~~~P~lP~TpeEia~~A~~c~~AGAsivHlHv------Rd~~dG~~s~D~~- 82 (316) T 3c6c_A 10 HHHENLYFQGMSRKVILTCAVTGNAPFNPKHPSMPITPAQIADACVEAAKAGASVAHIHV------RDPKTGGGSRDPV- 82 (316) T ss_dssp -----------CCEECEEEECCCSSCCCTTSTTCCCSHHHHHHHHHHHHHHTCSEEEECE------ECTTTCCEECCHH- T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE------CCCCCCCCCCCHH- T ss_conf 238889997189975999867899597123999989999999999999982753899764------5788898579999- Q ss_pred HHHHHHHHHHHHHCCCEEEEC Q ss_conf 799999999973014479861 Q gi|255764463|r 109 LINEGICAIKKNIPNIGIITD 129 (337) Q Consensus 109 lv~rAIr~IK~~fpdl~vi~D 129 (337) .+.++|..|++..||+.|..- T Consensus 83 ~y~e~i~~Ir~~~pd~ii~~T 103 (316) T 3c6c_A 83 LFKEVVDRVRSSGTDIVLNLT 103 (316) T ss_dssp HHHHHHHHHHTTTCCCEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEC T ss_conf 999999999976798279843 No 21 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Probab=93.48 E-value=0.17 Score=29.86 Aligned_cols=105 Identities=18% Similarity=0.323 Sum_probs=53.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144798613327100114 Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG 139 (337) Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337) |.-.+++++-+++.++++.+.|...|. .||..|- ..|. -+.+-|++||+.+|++- ..-|+ T Consensus 253 ~~~~~~~~d~~~~~a~~~~~~Gad~I~--------ikDt~G~--l~P~-~v~~lV~alr~~~p~ip---------I~~H~ 312 (718) T 3bg3_A 253 PSRTKYSLQYYMGLAEELVRAGTHILC--------IKDMAGL--LKPT-ACTMLVSSLRDRFPDLP---------LHIHT 312 (718) T ss_dssp TTCCTTCHHHHHHHHHHHHHHTCSEEE--------EECTTSC--CCHH-HHHHHHHHHHHHSTTCC---------EEEEC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCC--CCHH-HHHHHHHHHHHHCCCCE---------EEEEE T ss_conf 877756799999999999974998899--------4477646--6899-99999999997288707---------99950 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCCH-----HHHHHHHHHHCCCC Q ss_conf 3100136544628999999999999996289735246-676779-----99999999877885 Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADIIAPS-EMMDGR-----VQEIRKKLDSHGHI 196 (337) Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-dMMDGr-----V~aIR~~Ld~~g~~ 196 (337) ||- .|- =.--++.-++||||+|--+ .=|-|| ...+=.+|...|+. T Consensus 313 Hnd---~Gl---------AvAn~laAveAGad~VD~ti~glGertGnp~le~vva~L~~~g~d 363 (718) T 3bg3_A 313 HDT---SGA---------GVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLD 363 (718) T ss_dssp CCT---TSC---------HHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTTSTTC T ss_pred CCC---CCH---------HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 797---363---------999999999839998842135666866887799999998605988 No 22 >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Probab=93.08 E-value=0.55 Score=26.41 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 99999999987788577300336664354301016753102446777744315721147889888876640898799553 Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP 261 (337) Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP 261 (337) .+..||.+++..+-.+..|++-+-=+.+ ..-.||++-+....+-|||++++ | T Consensus 136 ~~~ki~aa~~a~~~~df~IiARTDa~~~---------------------------~g~deAi~Ra~aY~~AGAD~if~-~ 187 (295) T 1xg4_A 136 MVDRIRAAVDAKTDPDFVIMARTDALAV---------------------------EGLDAAIERAQAYVEAGAEMLFP-E 187 (295) T ss_dssp HHHHHHHHHHHCSSTTSEEEEEECCHHH---------------------------HCHHHHHHHHHHHHHTTCSEEEE-T T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCC---------------------------CCHHHHHHHHHHHHHHCCCEEEE-C T ss_conf 9999999997368998388962564200---------------------------48799999999999818958984-4 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 11458999999962499899993461 Q gi|255764463|r 262 GLPYLDVCFRIKEKFGLPTFAYQVSG 287 (337) Q Consensus 262 a~~yLDii~~~k~~~~~P~~aYqVSG 287 (337) +..-.|.++.+.+.+..|+.+-.+.| T Consensus 188 ~~~~~~~i~~~~~~~~~Pl~~~~~~~ 213 (295) T 1xg4_A 188 AITELAMYRQFADAVQVPILANITEF 213 (295) T ss_dssp TCCSHHHHHHHHHHHCSCBEEECCSS T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 78869999999985599866445688 No 23 >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Probab=92.79 E-value=0.4 Score=27.36 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=59.2 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 11666758988110488878632889999999999998889367633025633455445421576537999999999730 Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337) -|++|+--.|.-.+-+++--.-=++.+++.+++.+|++.|-..+=+. -+|+.|..+++++ ..-++|..|++.. T Consensus 4 ~pviI~~A~nGa~~~k~~~P~lPiTp~Eia~~A~~c~~AGAsivHlH------~Rd~dg~~s~d~~-~y~e~i~~iR~~~ 76 (275) T 3no5_A 4 KPCIISVAITGSLPRKKDNPAVPITVSEQVESTQAAFEAGATLVHLH------VRNDDETPTSNPD-RFALVLEGIRKHA 76 (275) T ss_dssp CCBCEEEECCCSSCCTTTCTTSCCSHHHHHHHHHHHHHHTCCEEEEC------EECTTSCEECCHH-HHHHHHHHHHHHS T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE------ECCCCCCCCCCHH-HHHHHHHHHHHHC T ss_conf 98799984789979844699998998999999999998177489988------5389989678999-9999999999866 Q ss_pred CCCEEE Q ss_conf 144798 Q gi|255764463|r 122 PNIGII 127 (337) Q Consensus 122 pdl~vi 127 (337) |++.+- T Consensus 77 p~~ii~ 82 (275) T 3no5_A 77 PGMITQ 82 (275) T ss_dssp TTCEEE T ss_pred CCCEEE T ss_conf 883563 No 24 >1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Probab=92.43 E-value=0.43 Score=27.14 Aligned_cols=214 Identities=11% Similarity=0.067 Sum_probs=111.0 Q ss_pred HHHHHHHHHHHHCCCCEEEE--EECCCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHC--CCEEEECCCCCHHHCCCC Q ss_conf 99999999999888936763--3025633455445421576---5379999999997301--447986133271001143 Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAI--FPNIPMDLRNNTGSHIIDP---DNLINEGICAIKKNIP--NIGIITDVALDPFTIHGH 140 (337) Q Consensus 68 d~L~~eie~~~~lGI~av~L--Fp~I~~~~Kd~~GseA~n~---dglv~rAIr~IK~~fp--dl~vi~DVcLc~YT~hGH 140 (337) |.+.+.-+.-++.|-.-|.- |...+..+++ .|.+.... ..+...+.+..|+.-+ +..|..++ .|+.... T Consensus 54 e~V~~iH~~Yi~AGAdII~TNTf~a~~~~L~~-~g~~~~e~~~~~~~~~aa~~~ar~a~~~~~~~vaGsi--gp~~~~~- 129 (406) T 1lt8_A 54 EAVRQLHREFLRAGSNVMQTFTFYASEDKLEN-RGNYVLEKISGQEVNEAAADIARQVADEGDALVAGGV--SQTPSYL- 129 (406) T ss_dssp HHHHHHHHHHHHTTCSEEECSCTTCSSCC--------------CHHHHHHHHHHHHHHHTTTTCEEEEEE--CCCHHHH- T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC--CCCCCCC- T ss_conf 99999999999975999995777146999997-1436589999999999999999874335684343266--7664334- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEE-CHHHHHHHHHHCCHHHHH Q ss_conf 1001365446289999999999999962897352466767799999999987788577300-336664354301016753 Q gi|255764463|r 141 DGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIM-PYVAKFNSSFYGPYRDAI 219 (337) Q Consensus 141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Im-sYsaKfaS~fYgPFRdA~ 219 (337) +...-++-.+...+|+..+.++|+|++.---|.| +..++.+++...-.+.+++ |.+ T Consensus 130 ------~~~~~~e~~~~~~eqi~~l~~~gvD~il~ETm~~--~~Ea~aa~~a~~~~~~Pv~vs~t--------------- 186 (406) T 1lt8_A 130 ------SAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEH--VEEAVWAVETLIASGKPVAATMA--------------- 186 (406) T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHTCSEEEECCCSC--HHHHHHHHHHHGGGTSCEEEEEC--------------- T ss_pred ------CCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH--HHHHHHHHHHHHCCCCCEEEEEE--------------- T ss_conf ------6899899999999999999835887000467767--89999999997614885689978--------------- Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHHHHHH-----CCCCEEEEECCHHHHH Q ss_conf 1024467777443157211478898888766408987995531---1458999999962-----4998999934618999 Q gi|255764463|r 220 STRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG---LPYLDVCFRIKEK-----FGLPTFAYQVSGEYAM 291 (337) Q Consensus 220 ~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa---~~yLDii~~~k~~-----~~~P~~aYqVSGEYam 291 (337) +..+.+ +.-....|+..+. .+.|+|.+.+-=+ -..+..+..+++. ...|+.+|-.++.|. T Consensus 187 -----~~~~g~---l~~g~~~e~~~~~---~~~~~~~vGiNC~~gp~~~~~~i~~l~~~~~~~~~~~~~~~~p~~~~~p- 254 (406) T 1lt8_A 187 -----IGPEGD---LHGVPPGEAAVRL---VKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTP- 254 (406) T ss_dssp -----CBTTBC---TTCCCHHHHHHHH---HTTTCSEEEEESSSCHHHHHHHHHHHHHHHHTTTCCCEEEEECCSBCCT- T ss_pred -----ECCCCC---CCCCCHHHHHHHH---HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC- T ss_conf -----757987---3898869999998---7327787986247888999999999998776524666433036612488- Q ss_pred HHHHHHCCCCC-------------HHHHHHHHHHHHHHHCCCEE Q ss_conf 99999888978-------------89999999999977269999 Q gi|255764463|r 292 IKAASLQGWIN-------------KNDAMMESLLAFKRAGCDGI 322 (337) Q Consensus 292 i~~a~~~g~~d-------------~~~~~~E~l~~~kRAGAd~I 322 (337) .+...||.+ ...-+-|....+...|+++| T Consensus 255 --na~~~~~~~~p~~~~~~~~~~~~~~~~a~~a~~~~~~Ga~II 296 (406) T 1lt8_A 255 --DANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYI 296 (406) T ss_dssp --TCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEE T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE T ss_conf --887767578986657766442589999999999998199975 No 25 >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A Probab=92.38 E-value=0.49 Score=26.78 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=57.4 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 11666758988110488878632889999999999998889367633025633455445421576537999999999730 Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337) .|+.|+--.|--..-+..=-.-=++.+++.+++..|++.|-..|=+. -+|++|..+++++ ....++..|++.. T Consensus 8 ~pvII~vA~nGa~~tk~~~P~lP~TpeEia~~A~~c~~AGAsivH~H------~Rd~~G~~sld~~-~y~e~i~~ir~~~ 80 (284) T 3chv_A 8 KPCIICVAITGSVPTKADNPAVPITVSEQVESTQEAFEAGAAIAHCH------VRNDDGTPSSDPD-RFARLTEGLHTHC 80 (284) T ss_dssp CCBCEEEECCCSSCCTTTCTTCCCSHHHHHHHHHHHHHHTCCEEEEC------EECTTSCEECCHH-HHHHHHHHHHHHS T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE------ECCCCCCCCCCHH-HHHHHHHHHHHHC T ss_conf 97799983789969845599998998999999999998188689986------4189939777889-9999999999867 Q ss_pred CCCEEEE Q ss_conf 1447986 Q gi|255764463|r 122 PNIGIIT 128 (337) Q Consensus 122 pdl~vi~ 128 (337) |++.|-. T Consensus 81 p~~ii~~ 87 (284) T 3chv_A 81 PGMIVQF 87 (284) T ss_dssp TTCEEEE T ss_pred CEEEEEE T ss_conf 8028975 No 26 >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2- propyl-3-methylmalate lyase; 2.70A {Dianthus caryophyllus} Probab=91.35 E-value=0.42 Score=27.24 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=44.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 14788988887664089879955311458999999962499899993461 Q gi|255764463|r 238 NVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSG 287 (337) Q Consensus 238 n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSG 287 (337) .-.|||.......+-|||+++| |+..-.|-|+.+.+.+..|+.+..+.| T Consensus 187 gl~eai~Ra~aY~eAGAD~ifi-~g~~~~~~i~~~~~~~~~p~~~~~~~g 235 (318) T 1zlp_A 187 GLEEGIRRANLYKEAGADATFV-EAPANVDELKEVSAKTKGLRIANMIEG 235 (318) T ss_dssp HHHHHHHHHHHHHHTTCSEEEE-CCCCSHHHHHHHHHHSCSEEEEEECTT T ss_pred CCHHHHHHHHHHHHCCCCEEEC-CCCCCHHHHHHHHHHCCCCCCCEECCC T ss_conf 8188999999999808988853-678999999999997589833523799 No 27 >2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A Probab=90.92 E-value=0.33 Score=27.91 Aligned_cols=164 Identities=14% Similarity=0.256 Sum_probs=106.4 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH Q ss_conf 99999999973014479861332710011431001365446289999999999999962897352466767799999999 Q gi|255764463|r 110 INEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKK 189 (337) Q Consensus 110 v~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~ 189 (337) +.++++.+-+.-||.+++. | .. |-+-.|. +-|+-++.-....+.-+..|+-++.|+ .|+-++ T Consensus 79 l~~a~~~l~~~~~d~I~~g--c--Ts------as~~~G~-~~~~~~~~~i~~~i~~~~~~~pv~t~~-------~Ai~~A 140 (273) T 2xed_A 79 RERCVLEIADAAPEVILYA--C--LV------AVMVGGP-GEHHRVESAVAEQLATGGSQALVRSSA-------GALVEG 140 (273) T ss_dssp HHHHHHHHHTTCCSEEEEC--C--HH------HHHTTCT-THHHHHHHHHHHHHHHTTCCCEEEEHH-------HHHHHH T ss_pred HHHHHHHHHCCCCCEEEEE--C--CH------HEEECCC-HHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHHH T ss_conf 8999986420466778870--4--30------0145275-077899999999985169998422789-------999999 Q ss_pred HHHCCCCCCCEE-CHHHHHHHHHHCCHHHHH----HCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC- Q ss_conf 987788577300-336664354301016753----102446--777744315721147889888876640898799553- Q gi|255764463|r 190 LDSHGHINVGIM-PYVAKFNSSFYGPYRDAI----STRDLL--KGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP- 261 (337) Q Consensus 190 Ld~~g~~~~~Im-sYsaKfaS~fYgPFRdA~----~S~p~~--~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP- 261 (337) |..-|...+.++ .|...-...+..=|+++= ... .| ..+..-+++++..-.+++++.. .+++|-+.|-= T Consensus 141 L~~lgakrIallTPY~~~v~~~~~~~~~~~G~eV~~~~-~l~~~~~~~ia~i~~~~i~~a~~~~~---~~~~DAI~IsCt 216 (273) T 2xed_A 141 LRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWR-ALEVADNTEVGCIPGEQVMAAARSLD---LSEVDALVISCA 216 (273) T ss_dssp HHHTTCCEEEEEECSCHHHHHHHHHHHHHTTCEEEEEE-ECCCCBHHHHHTCCHHHHHHHHHHSC---CTTCSEEEEESS T ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEEE-EECCCCCCEEECCCHHHHHHHHHHHC---CCCCCEEEEECC T ss_conf 99649985799747978999999999996782365555-30467774243159999999999852---558986999847 Q ss_pred -CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH Q ss_conf -1145899999996249989999346189999999 Q gi|255764463|r 262 -GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAA 295 (337) Q Consensus 262 -a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a 295 (337) +|+-+|+|.++-+.+++||..=+..-=+.+++.+ T Consensus 217 tnl~t~~ii~~lE~~lG~PVisSNqa~~W~~LR~~ 251 (273) T 2xed_A 217 VQMPSLPLVETAEREFGIPVLSAATAGAYSILRSL 251 (273) T ss_dssp SSSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHC T ss_conf 88767789999999879998960899999999986 No 28 >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa PAO1} Probab=90.49 E-value=0.44 Score=27.06 Aligned_cols=206 Identities=16% Similarity=0.087 Sum_probs=107.3 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH Q ss_conf 87863288999999999999888936763302--5633455445421576537999999999730144798613327100 Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPN--IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337) Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~--I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337) |||+|-----.+ +.+.|.+++++=+. .-..+--+++.. =+-.-+...++.|.... ++-|+.|. T Consensus 25 ~p~v~Da~SAri------~e~aGf~a~~~sg~~~~~s~lG~pD~~~--~t~~e~~~~v~~I~~~~-~~PvivD~------ 89 (287) T 3b8i_A 25 TASVFDPMSARI------AADLGFECGILGGSVASLQVLAAPDFAL--ITLSEFVEQATRIGRVA-RLPVIADA------ 89 (287) T ss_dssp CEECCSHHHHHH------HHHTTCSCEEECHHHHHHHHHSCCSSSC--SCHHHHHHHHHHHHTTC-SSCEEEEC------ T ss_pred EECCCCHHHHHH------HHHCCCCEEEHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHCCC-CCCEEECC------ T ss_conf 606768999999------9985999894758999997389998887--87899999998664047-86658526------ Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC---------------CCCHHHHHHHHHHHCCCCCCCEE Q ss_conf 114310013654462899999999999999628973524667---------------67799999999987788577300 Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEM---------------MDGRVQEIRKKLDSHGHINVGIM 201 (337) Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM---------------MDGrV~aIR~~Ld~~g~~~~~Im 201 (337) ++|.= |...+. +....+.++|+.-|-=-|= ..-.++.||.+++...-.+..|+ T Consensus 90 --------d~Gyg-~~~~~~---~~v~~~~~aGaagi~iED~~~~k~~~~~~~~~~~~~~~~~ki~aa~~a~~~~~~~i~ 157 (287) T 3b8i_A 90 --------DHGYG-NALNVM---RTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTII 157 (287) T ss_dssp --------TTCSS-SHHHHH---HHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEE T ss_pred --------CCCCC-CCHHHH---HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHEE T ss_conf --------54444-318999---999999975776678643677555665565555899997778888873034211111 Q ss_pred CHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE Q ss_conf 33666435430101675310244677774431572114788988887664089879955311458999999962499899 Q gi|255764463|r 202 PYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTF 281 (337) Q Consensus 202 sYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~ 281 (337) .-.- ++. ....|||.-+....+-|||++++ |+++..|.|+.+.+..+.|+- T Consensus 158 aRtd-------------------------a~~---~g~deAI~Ra~ay~eAGAD~ifi-~~~~~~e~i~~i~~~v~~Pl~ 208 (287) T 3b8i_A 158 ARTN-------------------------AEL---IDVDAVIQRTLAYQEAGADGICL-VGVRDFAHLEAIAEHLHIPLM 208 (287) T ss_dssp EEEE-------------------------TTT---SCHHHHHHHHHHHHHTTCSEEEE-ECCCSHHHHHHHHTTCCSCEE T ss_pred ECCC-------------------------CCC---CCHHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHCCCCEE T ss_conf 0443-------------------------332---69999999999998639988973-277999999999986699989 Q ss_pred EEECCHHHH--HHHHHHHCCCC-----C-----HHHHHHHHHHHHHHHCCCE Q ss_conf 993461899--99999988897-----8-----8999999999997726999 Q gi|255764463|r 282 AYQVSGEYA--MIKAASLQGWI-----N-----KNDAMMESLLAFKRAGCDG 321 (337) Q Consensus 282 aYqVSGEYa--mi~~a~~~g~~-----d-----~~~~~~E~l~~~kRAGAd~ 321 (337) .-. .|--- -..-..+.|.- . --+++.|.|..++.++.+. T Consensus 209 v~~-~g~~~~~~~~eL~~lGv~~v~~g~~~~~aa~~a~~~~l~~~~~~~~~~ 259 (287) T 3b8i_A 209 LVT-YGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASD 259 (287) T ss_dssp EEC-TTCGGGCCHHHHHHTTEEEEECCCHHHHHHHHHHHHHHHHHHTCCCCC T ss_pred EEC-CCCCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 946-899999999999977984999854999999999999999851556767 No 29 >2hjp_A Phosphonopyruvate hydrolase; phosporus- carbon bond cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Probab=89.75 E-value=0.28 Score=28.36 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=55.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCC--C-----------HHH Q ss_conf 478898888766408987995531145899999996249989999346189999999988897--8-----------899 Q gi|255764463|r 239 VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWI--N-----------KND 305 (337) Q Consensus 239 ~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~--d-----------~~~ 305 (337) ..||+.-+....+-|||+++|-....-.|.|..+.+....|+....+-|++..+.......+. . --+ T Consensus 165 ~~eai~Ra~aY~eAGAD~ifv~~~~~~~e~i~~~~~~~~~~v~~~~~~~~~p~l~~~e~~~lgg~~~viy~~~~~raa~~ 244 (290) T 2hjp_A 165 QQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVG 244 (290) T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHH T ss_conf 18999999999987999987135559999999998741677479984478886234789988608579866499999999 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999999977269 Q gi|255764463|r 306 AMMESLLAFKRAGC 319 (337) Q Consensus 306 ~~~E~l~~~kRAGA 319 (337) ++.+.+..|++.|- T Consensus 245 a~~~~l~~l~~~G~ 258 (290) T 2hjp_A 245 AVREVFARIRRDGG 258 (290) T ss_dssp HHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999997099 No 30 >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Probab=88.80 E-value=0.7 Score=25.70 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=50.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHH---HHHHHHHHHCCCC----------CHH Q ss_conf 47889888876640898799553114589999999624-998999934618---9999999988897----------889 Q gi|255764463|r 239 VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGE---YAMIKAASLQGWI----------NKN 304 (337) Q Consensus 239 ~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGE---Yami~~a~~~g~~----------d~~ 304 (337) -.|||+-+....+-|||+++| |+....+-|+.+...+ ..|+.+-.+.|- +--+.-..+.|+- --- T Consensus 177 ~deAI~Ra~aY~~AGAD~ifi-~g~~s~e~i~~~~~~~~~~Pl~~n~~~~g~tp~~s~~eL~~lGv~~v~~~~~~~raa~ 255 (307) T 3lye_A 177 YEECIERLRAARDEGADVGLL-EGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLAPAY 255 (307) T ss_dssp HHHHHHHHHHHHHTTCSEEEE-CCCSCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHCCCCEEEECHHHHHHHH T ss_conf 189999999637639999862-5889999999999862699806423557999887899999779849997659999999 Q ss_pred HHHHHHHHHHHHHCCCEE Q ss_conf 999999999977269999 Q gi|255764463|r 305 DAMMESLLAFKRAGCDGI 322 (337) Q Consensus 305 ~~~~E~l~~~kRAGAd~I 322 (337) +++.+.+..++.-|-.-+ T Consensus 256 ~a~~~~~~~l~~~g~~~~ 273 (307) T 3lye_A 256 AAIRETLVRLRDHGVVGT 273 (307) T ss_dssp HHHHHHHHHHHHHSCCCC T ss_pred HHHHHHHHHHHHCCCCCC T ss_conf 999999999997199754 No 31 >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Probab=87.88 E-value=1.6 Score=23.27 Aligned_cols=168 Identities=23% Similarity=0.299 Sum_probs=88.4 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337) .+.+..++-++++.. .+..| .+ |.+-+...|+ +.|+.+++.+|+..++.|.=+ T Consensus 10 ~~~~~~l~~~~~~~~-~v~~i----Ki--------g~~l~~~~G~--~~i~~l~~~~~~~~i~~D~k~------------ 62 (207) T 3ajx_A 10 LSTEAALELAGKVAE-YVDII----EL--------GTPLIKAEGL--SVITAVKKAHPDKIVFADMKT------------ 62 (207) T ss_dssp SCHHHHHHHHHHHGG-GCSEE----EE--------CHHHHHHHCT--HHHHHHHHHSTTSEEEEEEEE------------ T ss_pred CCHHHHHHHHHHHCC-CCCEE----EE--------CHHHHHHCCH--HHHHHHHHHCCCCEEECCCCC------------ T ss_conf 999999999997088-67899----95--------5499885599--999999873799464011212------------ Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC Q ss_conf 365446289999999999999962897352466767-7999999999877885773003366643543010167531024 Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD-GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD 223 (337) Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD-GrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p 223 (337) .|+..|+. + ..+++|||++--..... ..+.+..++..+.|..-...|.. T Consensus 63 ----~di~~t~~---~---~~~~~gad~itvH~~~g~~~l~~~~~~~~~~~~~~~~~l~~-------------------- 112 (207) T 3ajx_A 63 ----MDAGELEA---D---IAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIG-------------------- 112 (207) T ss_dssp ----CSCHHHHH---H---HHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTT-------------------- T ss_pred ----CCCCHHHH---H---HHHHHCCCEEEEEHHHCHHHHHHHHHHHHHCCCEEEEEECC-------------------- T ss_conf ----15976899---9---99981999999855424456999999999729837999358-------------------- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH-------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH Q ss_conf 46777744315721147889888876640898799553114-------58999999962499899993461899999999 Q gi|255764463|r 224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP-------YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAAS 296 (337) Q Consensus 224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~-------yLDii~~~k~~~~~P~~aYqVSGEYami~~a~ 296 (337) ..+..+...+. .+-|.|++.+-++.. .++-+..++...+.|+ +|.| T Consensus 113 ------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~g--------- 165 (207) T 3ajx_A 113 ------------IEDKATRAQEV---RALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKARVPF---SVAG--------- 165 (207) T ss_dssp ------------CSSHHHHHHHH---HHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHHTSCE---EEES--------- T ss_pred ------------CCCHHHHHHHH---HHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCE---EECC--------- T ss_conf ------------99979999999---97239799980355545456313889999986037767---7897--------- Q ss_pred HCCCCCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 8889788999999999997726999982 Q gi|255764463|r 297 LQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 297 ~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337) | +. .++....+++|||++|- T Consensus 166 --G-i~-----~~~~~~a~~~GaD~iVv 185 (207) T 3ajx_A 166 --G-VK-----VATIPAVQKAGAEVAVA 185 (207) T ss_dssp --S-CC-----GGGHHHHHHTTCSEEEE T ss_pred --C-CC-----CCCHHHHHHCCCCEEEE T ss_conf --9-88-----15899999859799998 No 32 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Probab=87.49 E-value=1.7 Score=23.12 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=40.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144 Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI 124 (337) Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl 124 (337) +.-|+++.+.++++++.+.+.|++.|.+.++..+. .....+...++.+++.++.+ T Consensus 79 ~~~~~ls~eeI~~~~~~~~~~G~~~i~l~~g~~~~----------~~~~~~~~~i~~i~~~~~~i 133 (348) T 3iix_A 79 LKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPY----------XMPDVISDIVKEIKKMGVAV 133 (348) T ss_dssp SCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGG----------GTTHHHHHHHHHHHTTSCEE T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC----------CCHHHHHHHHHHCCCCCEEE T ss_conf 76615899999999999998199289982588876----------64899999987403332123 No 33 >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Probab=86.93 E-value=1.1 Score=24.44 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=86.5 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCC Q ss_conf 8899999999999988893676330256334554454215765379999999997301-447986133271001143100 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi 143 (337) ...+.+.+.++.+.+.|++.+.+++...+-. +++.+ =-.+.++...+..+ .+-|+.-|. T Consensus 18 iD~~~l~~~i~~li~~Gv~Gi~~~G~tGE~~-------~Ls~~-Er~~l~~~~~~~~~~~~~vi~gv~------------ 77 (294) T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTTGESP-------TLTFE-EHEKVIEFAVKRAAGRIKVIAGTG------------ 77 (294) T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTTTTGG-------GSCHH-HHHHHHHHHHHHHTTSSEEEEECC------------ T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCCHH-------HCCHH-HHHHHHHHHHHHCCCCCCEEEEEC------------ T ss_conf 8999999999999975999899785543343-------48999-999999999997389987899817------------ Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCE---EECCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH Q ss_conf 13654462899999999999999628973---524667---677999999999877885773003366643543010167 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADI---IAPSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD 217 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDi---vAPSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd 217 (337) ..+.+...+.|...+++|||. +.|.-. .++-+...|+.-+.. +.+|+-|-....+. T Consensus 78 --------~~s~~~~i~~a~~a~~~Gad~i~v~pP~~~~~~~~~~~~~~~~i~~~~---~~pi~lYn~p~~~g------- 139 (294) T 2ehh_A 78 --------GNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV---DIPIIIYNIPSRTC------- 139 (294) T ss_dssp --------CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEEEECHHHHS------- T ss_pred --------CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCC------- T ss_conf --------845999999999999769999998899999989999999999999713---99789995631048------- Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 531024467777443157211478898888766408987995531145899999996249989999 Q gi|255764463|r 218 AISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAY 283 (337) Q Consensus 218 A~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aY 283 (337) +.+++ +.+.+...++ -.++.+|=+.+.++-+.++.+.+.-.+..+ T Consensus 140 --------------~~~~~----~~l~~l~~~~---~nv~giK~~~~d~~~~~~~~~~~~~~~~v~ 184 (294) T 2ehh_A 140 --------------VEISV----DTMFKLASEC---ENIVASKESTPNMDRISEIVKRLGESFSVL 184 (294) T ss_dssp --------------CCCCH----HHHHHHHHHC---TTEEEEEECCSCHHHHHHHHHHHCTTSEEE T ss_pred --------------CCCCH----HHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHCCCCEEEE T ss_conf --------------76425----7999998435---855999808888899999999759987999 No 34 >2qiw_A PEP phosphonomutase; NP_600288.1, structural genomics, joint center for structural genomics, JCSG; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Probab=86.78 E-value=1.8 Score=22.86 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=50.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 14788988887664089879955311458999999962499899993461899999999888978899999999999772 Q gi|255764463|r 238 NVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRA 317 (337) Q Consensus 238 n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRA 317 (337) ...|||+.+....+-|||++.+ |+++..+.++++.+..+.|+-.-.+.++. .+.+.. .-+... T Consensus 166 ~~~eaI~Ra~ay~~AGAd~i~i-e~~~s~e~~~~i~~~v~~Pv~~~~~~~~~--------~~~~~~--------~~l~~l 228 (255) T 2qiw_A 166 PMVEAIKRIKLMEQAGARSVYP-VGLSTAEQVERLVDAVSVPVNITAHPVDG--------HGAGDL--------ATLAGL 228 (255) T ss_dssp HHHHHHHHHHHHHHHTCSEEEE-CCCCSHHHHHHHHTTCSSCBEEECBTTTB--------BTTBCH--------HHHHHT T ss_pred HHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHCCCCEEEEEECCCC--------CCCCCH--------HHHHHC T ss_conf 1999999999999829978998-37899999999998649986899834788--------999989--------999975 Q ss_pred CCCEEE Q ss_conf 699998 Q gi|255764463|r 318 GCDGIF 323 (337) Q Consensus 318 GAd~Ii 323 (337) |...|+ T Consensus 229 G~~~v~ 234 (255) T 2qiw_A 229 GVRRVT 234 (255) T ss_dssp TCCEEE T ss_pred CCCEEE T ss_conf 995999 No 35 >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Probab=86.20 E-value=2 Score=22.66 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=85.7 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|+..+.+++...+- .+++.+-- .+.++.+.+..+ .+-||+-|. T Consensus 28 g~iD~~~~~~~i~~l~~~Gv~Gl~~~G~tGE~-------~~Ls~eEr-~~l~~~~~~~~~~~~~vi~gv~---------- 89 (301) T 1xky_A 28 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGES-------PTLTSEEK-VALYRHVVSVVDKRVPVIAGTG---------- 89 (301) T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHH-HHHHHHHHHHHTTSSCEEEECC---------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCHH-------HHCCHHHH-HHHHHHHHHHCCCCCCEEEEEC---------- T ss_conf 49499999999999997699989978652206-------55899999-9999999986046787688727---------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--CCCC----CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH Q ss_conf 001365446289999999999999962897352--4667----6779999999998778857730033666435430101 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA--PSEM----MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY 215 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA--PSdM----MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF 215 (337) . .+.+...+.+...+++|+|.+. |--. -++-+...|+..+.. +.+|+=|-.-..+ T Consensus 90 ------~----~s~~~~i~~a~~a~~~Gad~i~v~pP~~~~~~~~~i~~~~~~i~~~~---~~pi~lYn~P~~~------ 150 (301) T 1xky_A 90 ------S----NNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST---PLPVMLYNVPGRS------ 150 (301) T ss_dssp ------C----SCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC---SSCEEEEECHHHH------ T ss_pred ------C----HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEECCCCC------ T ss_conf ------3----66999999999999759999997899789989999999999998518---9978999687633------ Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 6753102446777744315721147889888876640898799553114589999999624998999934 Q gi|255764463|r 216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQV 285 (337) Q Consensus 216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqV 285 (337) | +.+++ |-+++ +.+=-.++.+|-..+-+..+..+.....-.+..|.- T Consensus 151 -----------g----~~~~~----~~~~~----l~~~pnvvgiK~~~~~~~~~~~~~~~~~~~~~v~~G 197 (301) T 1xky_A 151 -----------I----VQISV----DTVVR----LSEIENIVAIKDAGGDVLTMTEIIEKTADDFAVYSG 197 (301) T ss_dssp -----------S----SCCCH----HHHHH----HHTSTTEEEEEECSSCHHHHHHHHHHSCTTCEEEES T ss_pred -----------C----CCCCH----HHHHH----HCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC T ss_conf -----------5----58799----99998----533899899865889778999998634898699968 No 36 >3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural genomics of infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A Probab=85.26 E-value=2.2 Score=22.36 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=56.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHH---HHHHHHHHCCCC----------CHHH Q ss_conf 478898888766408987995531145899999996249989999346189---999999988897----------8899 Q gi|255764463|r 239 VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEY---AMIKAASLQGWI----------NKND 305 (337) Q Consensus 239 ~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEY---ami~~a~~~g~~----------d~~~ 305 (337) -.|||+-+....+-|||++++ |+..-.+-+..+......|+..-.+-|-. --+.-..+.|+= ---+ T Consensus 174 ldeAI~Ra~aY~~AGAD~ifi-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~s~~eL~~~Gv~~i~~~~~~~raa~~ 252 (305) T 3ih1_A 174 LDEAIERANAYVKAGADAIFP-EALQSEEEFRLFNSKVNAPLLANMTEFGKTPYYSAEEFANMGFQMVIYPVTSLRVAAK 252 (305) T ss_dssp HHHHHHHHHHHHHHTCSEEEE-TTCCSHHHHHHHHHHSCSCBEEECCTTSSSCCCCHHHHHHTTCSEEEECSHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEECHHHHHHHHH T ss_conf 999999999999839989940-7777789999999864998798966889988889999998799899870699999999 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999999977269 Q gi|255764463|r 306 AMMESLLAFKRAGC 319 (337) Q Consensus 306 ~~~E~l~~~kRAGA 319 (337) ++.+++..+++.|- T Consensus 253 a~~~~~~~i~~~G~ 266 (305) T 3ih1_A 253 AYENVFTLIKETGS 266 (305) T ss_dssp HHHHHHHHHHHHSS T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999998299 No 37 >3noe_A DAP-A, dihydrodipicolinate synthase; Lys biosynthesis pathway, lyase; 2.95A {Pseudomonas aeruginosa} Probab=85.21 E-value=2 Score=22.67 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=60.3 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|+..+.+.+...+-. +-+..+- .+.++...+... ..-||+-|. | T Consensus 17 ~~iD~~~~~~~i~~li~~Gv~gi~i~G~tGE~~-----~Ls~~Er---~~l~~~~~~~~~g~~~vi~gv~--------~- 79 (292) T 3noe_A 17 GRLDWDSLAKLVDFHLQDGTNAIVAVGTTGESA-----TLDVEEH---IQVVRRVVDQVKGRIPVIAGTG--------A- 79 (292) T ss_dssp SCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGG-----GCCHHHH---HHHHHHHHHHHTTSSCEEEECC--------C- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCHHH-----HCCHHHH---HHHHHHHHHHHCCCCCEEEECC--------C- T ss_conf 695999999999999985999899885752266-----6999999---9999999997258886898558--------7- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC---CCCHHHHHHHHHHHCCCCCCCEECHH Q ss_conf 00136544628999999999999996289735---24667---67799999999987788577300336 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII---APSEM---MDGRVQEIRKKLDSHGHINVGIMPYV 204 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYs 204 (337) .+.+...+.|-...++|||.| .|.-. .|+-+...++.-+.. +.+|+-|- T Consensus 80 -----------~s~~~~i~~a~~a~~~Gad~v~v~~P~~~~~~~~~i~~~~~~ia~~~---~~pi~~Y~ 134 (292) T 3noe_A 80 -----------NSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAV---AIPQILYN 134 (292) T ss_dssp -----------SSHHHHHHHHHHHHTTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS---CSCEEEEE T ss_pred -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEE T ss_conf -----------55999999999999849999998899889989999999999999747---99889997 No 38 >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3lb0_A* 3l2i_A* 3nnt_A* 3m7w_A* 1gqn_A 1l9w_A* 1qfe_A* Probab=84.92 E-value=2.3 Score=22.26 Aligned_cols=214 Identities=17% Similarity=0.227 Sum_probs=110.5 Q ss_pred HHHHHCCCCCHHHCCCCEEE---ECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC Q ss_conf 99863477888773311666---758988110488878632889999999999998889367633025633455445421 Q gi|255764463|r 27 REMVREHRLSVSDLILPIFL---TSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHI 103 (337) Q Consensus 27 R~Lv~Et~Ls~~dLI~PiFV---~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA 103 (337) -+|-+||..-+++..-|+=| +=|.+.+.-+-++-|- +.+.++++++.+...|.-.|=+= ++ -..+ T Consensus 11 ~~~~~~~~~~~~~~m~~v~v~~~~~g~g~PkIcVpi~~~---t~~e~l~~a~~~~~~~aDlvE~R--lD-~l~~------ 78 (276) T 3o1n_A 11 VDLGTENLYFQSNAMKTVTVRDLVVGEGAPKIIVSLMGK---TITDVKSEALAYREADFDILEWR--VD-HFAN------ 78 (276) T ss_dssp --------------CCCEEETTEEETSSSCEEEEEECCS---SHHHHHHHHHHHTTSCCSEEEEE--GG-GCTT------ T ss_pred CCCCCCCCHHHHCCCCEEEECCEEECCCCCEEEEEECCC---CHHHHHHHHHHHHCCCCCEEEEE--EC-CCCC------ T ss_conf 565644330023167169985789759996899996889---99999999998601799989997--62-3577------ Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCH Q ss_conf 576537999999999730144798613327100114310013654462899999999999999628-9735246676779 Q gi|255764463|r 104 IDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG-ADIIAPSEMMDGR 182 (337) Q Consensus 104 ~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG-aDivAPSdMMDGr 182 (337) ..+-+-+...++.+++..+++-+|. .+-+..+-|-. ..+.++-++.|... +++| +|+|-----.+-. T Consensus 79 ~~~~~~~~~~~~~lr~~~~~~PiI~-----T~Rt~~EGG~~---~~~~~~~~~ll~~~----~~~~~~d~IDIEl~~~~~ 146 (276) T 3o1n_A 79 VTTAESVLEAAGAIREIITDKPLLF-----TFRSAKEGGEQ---ALTTGQYIDLNRAA----VDSGLVDMIDLELFTGDD 146 (276) T ss_dssp TTCHHHHHHHHHHHHHHCCSSCEEE-----ECCBGGGTCSB---CCCHHHHHHHHHHH----HHHTCCSEEEEEGGGCHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEE-----EECCHHHCCCC---CCCHHHHHHHHHHH----HHCCCCCEEEEECCCCHH T ss_conf 7988999999999997358997899-----97975669998---89999999999999----980899779643126188 Q ss_pred HHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEE- Q ss_conf 999999998778857-73003366643543010167531024467777443157211478898888766-408987995- Q gi|255764463|r 183 VQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI-QESADMLLV- 259 (337) Q Consensus 183 V~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~-~EGAD~lMV- 259 (337) .+++.++...-.+ ..|+||- .|.+ .| ..+.+.+..... .-|||++=+ T Consensus 147 --~~~~l~~~a~~~~~~vI~S~H-------------------dF~~-------tP--~~~el~~~~~~m~~~gaDivKiA 196 (276) T 3o1n_A 147 --EVKATVGYAHQHNVAVIMSNH-------------------DFHK-------TP--AAEEIVQRLRKMQELGADIPKIA 196 (276) T ss_dssp --HHHHHHHHHHHTTCEEEEEEE-------------------ESSC-------CC--CHHHHHHHHHHHHHTTCSEEEEE T ss_pred --HHHHHHHHHHHCCCEEEEEEC-------------------CCCC-------CC--CHHHHHHHHHHHHHCCCCEEEEE T ss_conf --999999987525967999861-------------------4889-------98--99999999999986289989999 Q ss_pred -CC-----CHHHHHHHHHHHHHC-CCCEEEEEC--CHHHHHHHH Q ss_conf -53-----114589999999624-998999934--618999999 Q gi|255764463|r 260 -KP-----GLPYLDVCFRIKEKF-GLPTFAYQV--SGEYAMIKA 294 (337) Q Consensus 260 -KP-----a~~yLDii~~~k~~~-~~P~~aYqV--SGEYami~~ 294 (337) .| .+..|.....+++.. +.|+.++.- .|-++-|.. T Consensus 197 ~~~~~~~D~l~ll~~~~~~~~~~~~~PlI~~~MG~~G~~SRi~~ 240 (276) T 3o1n_A 197 VMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAG 240 (276) T ss_dssp ECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCH T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH T ss_conf 80699889999999999999617899889997898877999979 No 39 >2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} Probab=84.45 E-value=2.4 Score=22.12 Aligned_cols=176 Identities=17% Similarity=0.204 Sum_probs=89.7 Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH Q ss_conf 53799999999973014479861332710011431001365446289999999999999962897352466767799999 Q gi|255764463|r 107 DNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEI 186 (337) Q Consensus 107 dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aI 186 (337) ..+++.-.|.+-..+|.+.+ ...|+ .+|-.+|..+. +-......+.+.+..+.++|+|.|.-...-|-=+.++ T Consensus 20 ~~~~~~~~r~~~~~~p~v~v-~~~~i----pd~p~~I~~~~--~~~~~~p~l~~~~~~le~~g~DaivIaC~t~~~l~~~ 92 (228) T 2eq5_A 20 KEILNLHGRIIESAFPELKV-VSRCI----EDQPKGIYNEE--TEREAEPKIIRLAKEFEREGVDAIIISCAADPAVEKV 92 (228) T ss_dssp HHHHTHHHHHHHHHCTTEEE-EEEEC----SSCTTCCSSHH--HHHHHHHHHHHHHHHHHHTTCSEEEECSTTCTTHHHH T ss_pred HHHHHHHHHHHHHHCCCCEE-EEECC----CCCCCCCCCHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH T ss_conf 78899999888754899669-97479----99987677831--5766379999999999877998999906875999999 Q ss_pred HHHHH---------------HCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HH Q ss_conf 99998---------------778857730033666435430101675310244677774431572114788988887-66 Q gi|255764463|r 187 RKKLD---------------SHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI-DI 250 (337) Q Consensus 187 R~~Ld---------------~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~-D~ 250 (337) |+.++ ..| ...+|+.+.......++.-.++.........+--..-+.+.....+.+++... =. T Consensus 93 r~~~~iPVig~~ea~~~~a~~~g-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 171 (228) T 2eq5_A 93 RKLLSIPVIGAGSSVSALALAYG-RRVGVLNLTEETPKVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLK 171 (228) T ss_dssp HHHCSSCEEEHHHHHHHHHHTTC-SSEEEECSSSCCCHHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHH T ss_pred HHHCCCCEECCHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 98659985563188999999838-87447523300389999999873446655531342111246789999999999998 Q ss_pred HCCCCEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH Q ss_conf 4089879955-3114589999999624998999934618999999 Q gi|255764463|r 251 QESADMLLVK-PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKA 294 (337) Q Consensus 251 ~EGAD~lMVK-Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~ 294 (337) ++|||.+..= -+++++.....+.+.+.+|| +.+=-++++. T Consensus 172 ~~gadaiiLGCT~~~~~~~~~~l~~~~gvpV----IDp~~a~~~~ 212 (228) T 2eq5_A 172 EKGVEVIALGCTGMSTIGIAPVLEEEVGIPV----IDPVIASGAV 212 (228) T ss_dssp HTTCSEEEECCTHHHHHTCHHHHHHHHSSCE----ECHHHHHHHH T ss_pred HCCCCEEEECCCCCHHHHHHHHHHCCCCCEE----ECCHHHHHHH T ss_conf 6699889981787024555798730699779----8669999999 No 40 >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 Probab=83.95 E-value=2.1 Score=22.41 Aligned_cols=115 Identities=11% Similarity=0.154 Sum_probs=61.9 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301-44798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+++.|++.|.+++...+.. +++.+- -.+.++...+..+ .+-||+-|. T Consensus 29 ~iD~~~~~~~i~~li~~Gv~gi~~~G~tGE~~-------~Ls~~E-r~~l~~~~~~~~~~~~~vi~gv~----------- 89 (306) T 1o5k_A 29 ELDLESYERLVRYQLENGVNALIVLGTTGESP-------TVNEDE-REKLVSRTLEIVDGKIPVIVGAG----------- 89 (306) T ss_dssp EECHHHHHHHHHHHHHTTCCEEEESSGGGTGG-------GCCHHH-HHHHHHHHHHHHTTSSCEEEECC----------- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEEHHHHH-------HCCHHH-HHHHHHHHHHHCCCCCCEEEECC----------- T ss_conf 78999999999999976999899682134255-------589999-99999999985488888898468----------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCC----CCCHHHHHHHHHHHCCCCCCCEECHHHHHHH Q ss_conf 0136544628999999999999996289735--24667----6779999999998778857730033666435 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADII--APSEM----MDGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdM----MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS 209 (337) .- +.+.-.+.|...+++|||.| .|--. .|+-+..-++.-+. .+.+|+-|-.-..+ T Consensus 90 -----~~----~~~~ai~~a~~a~~~Gad~v~v~pP~~~~~~~~~i~~~~~~ia~a---~~~pi~iYn~p~~~ 150 (306) T 1o5k_A 90 -----TN----STEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISER---TDLGIVVYNVPGRT 150 (306) T ss_dssp -----CS----CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEEEECHHHH T ss_pred -----CC----CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCC T ss_conf -----65----499999999999956999999859999997999999999999982---79988999788514 No 41 >3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile 630} Probab=83.21 E-value=2.7 Score=21.79 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=82.6 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337) -+.+.++++++.+...|...|=+= ++ -..+. .+-.-+...++.+++.++++-+|.- +-+..+-|-. T Consensus 29 ~t~~e~l~~~~~~~~~~aD~vElR--lD-~l~~~------~~~~~i~~~l~~l~~~~~~~PiI~T-----~R~~~eGG~~ 94 (258) T 3js3_A 29 KNKKDIIKEAKELKDACLDIIEWR--VD-FFENV------ENIKEVKEVLYELRSYIHDIPLLFT-----FRSVVEGGEK 94 (258) T ss_dssp SSHHHHHHHHHHHTTSSCSEEEEE--GG-GCTTT------TCHHHHHHHHHHHHHHHTTSCEEEE-----CCCGGGTCSC T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--EE-CCCCC------CCHHHHHHHHHHHHHHCCCCCEEEE-----ECCCCCCCCC T ss_conf 998999999998734599989998--60-36676------8899999999999973589978999-----6561028988 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCH-HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC Q ss_conf 3654462899999999999999628-9735246676779-9999999987788577300336664354301016753102 Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAG-ADIIAPSEMMDGR-VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR 222 (337) Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AG-aDivAPSdMMDGr-V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~ 222 (337) ..+.++-++.|.+. +.+| +|+|-=---++-. ...+.+..... .-..|+||- T Consensus 95 ---~~~~~~~~~ll~~~----~~~~~~d~iDiE~~~~~~~~~~l~~~a~~~--~~~vI~S~H------------------ 147 (258) T 3js3_A 95 ---LISRDYYTTLNKEI----SNTGLVDLIDVELFMGDEVIDEVVNFAHKK--EVKVIISNH------------------ 147 (258) T ss_dssp ---CCCHHHHHHHHHHH----HHTSCCSEEEEEGGGCHHHHHHHHHHHHHT--TCEEEEEEE------------------ T ss_pred ---CCCHHHHHHHHHHH----HHCCCCCHHHHHHHCCHHHHHHHHHHHHHC--CCEEEEEEE------------------ T ss_conf ---89999999999999----980894146888755199999999886616--976999994------------------ Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEC-CC------HHHHHHHHHHHHH-CCCCEEEEEC Q ss_conf 4467777443157211478898888766-4089879955-31------1458999999962-4998999934 Q gi|255764463|r 223 DLLKGDKKTYYLDPANVQEAIREASIDI-QESADMLLVK-PG------LPYLDVCFRIKEK-FGLPTFAYQV 285 (337) Q Consensus 223 p~~~gdr~sYQmd~~n~~eA~~e~~~D~-~EGAD~lMVK-Pa------~~yLDii~~~k~~-~~~P~~aYqV 285 (337) .|.+ .| ..+.+.+...+. .-|||++=+= .+ +..|......+.. .+.|+.++.- T Consensus 148 -~f~~-------tp--~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~l~ll~~~~~~~~~~~~~p~I~~~M 209 (258) T 3js3_A 148 -DFNK-------TP--KKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSM 209 (258) T ss_dssp -ESSC-------CC--CHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHHHHHTTCSSCBEEEEC T ss_pred -CCCC-------CC--CHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf -4899-------98--89999999999997489869999822988999999999999986268998899966 No 42 >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Probab=83.09 E-value=2.6 Score=21.80 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=69.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCC Q ss_conf 2889999999999998889367633025633455445421576537999999999730-144798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+.+.|+.++.+++...+-. +++.+ =-.+.++...+.. +.+-|++-+.- T Consensus 17 ~iD~~~~~~~i~~~~~~Gv~gi~~~G~tgE~~-------~Ls~~-Er~~l~~~~~~~~~~r~~vi~g~~~---------- 78 (289) T 2yxg_A 17 EVDFDGLEENINFLIENGVSGIVAVGTTGESP-------TLSHE-EHKKVIEKVVDVVNGRVQVIAGAGS---------- 78 (289) T ss_dssp EECHHHHHHHHHHHHHTTCSEEEESSTTTTGG-------GSCHH-HHHHHHHHHHHHHTTSSEEEEECCC---------- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-------HCCHH-HHHHHHHHHHHHHCCCCCEEEECCC---------- T ss_conf 78999999999999976999899784430354-------48999-9999999999982899608973687---------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH Q ss_conf 0136544628999999999999996289735---24667---677999999999877885773003366643543 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADII---APSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337) .+.+...+.|....++|||.| .|.-- -|+-+...+...|.. +.+||=|-....+.. T Consensus 79 ----------~s~~~ai~~a~~a~~~Gad~v~v~~P~~~~~~~~~i~~~~~~ia~~~---~~pi~iy~~p~~~~~ 140 (289) T 2yxg_A 79 ----------NCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESI---NLPIVLYNVPSRTAV 140 (289) T ss_dssp ----------SSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEEEECHHHHSC T ss_pred ----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEECCCCCCC T ss_conf ----------45999999999999779999998898788999999999999999647---998899978863454 No 43 >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} Probab=82.85 E-value=1.9 Score=22.78 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=49.2 Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 81104888786328899999999999988893676330256334554-454215765379999999997301447986 Q gi|255764463|r 52 TVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN-TGSHIIDPDNLINEGICAIKKNIPNIGIIT 128 (337) Q Consensus 52 ~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~-~GseA~n~dglv~rAIr~IK~~fpdl~vi~ 128 (337) .|..-|.+| ++.|++.+++.+|++.|-..|=+.+ +|+ +|...++++ ...+++..|++..|.|+..+ T Consensus 20 tk~~~P~lP----~TpeEia~~a~~c~~AGAsivH~H~------Rd~~dG~~s~d~~-~y~~ii~~IR~~~~~iv~~t 86 (311) T 3e02_A 20 TPTMSPYLP----ITPEEIVKEGVAAAEAGAAMLHLHA------RDPLNGRPSQDPD-LFMRFLPQLKERTDAILNIT 86 (311) T ss_dssp CGGGCTTSC----CSHHHHHHHHHHHHHHTCSEEEECE------ECTTTCCEECCHH-HHTTTHHHHHHHCCCEEEEC T ss_pred CCCCCCCCC----CCHHHHHHHHHHHHHHCCCEEEEEE------CCCCCCCCCCCHH-HHHHHHHHHHHHCCCEEEEE T ss_conf 702299998----9999999999999982673899885------3799989477999-99999999997499369873 No 44 >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomerase; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Probab=82.71 E-value=2.8 Score=21.66 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=80.8 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC--------CCC Q ss_conf 799999999973014479861332710011431001365446289999999999999962897352466--------767 Q gi|255764463|r 109 LINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSE--------MMD 180 (337) Q Consensus 109 lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd--------MMD 180 (337) -+...++.|.... ++-|+.|. -.|. | |...+...+ -.+++||+.-|-=-| -++ T Consensus 66 e~~~~~~~I~~~~-~iPv~vD~---------d~Gy---G---~~~~v~~tv---~~~~~aG~agi~iEDq~~pk~~~~~~ 126 (295) T 1s2w_A 66 QVVEVLEFMSDAS-DVPILLDA---------DTGY---G---NFNNARRLV---RKLEDRGVAGACLEDKLFPKTNSLHD 126 (295) T ss_dssp HHHHHHHHHHHTC-SSCEEEEC---------CSSC---S---SHHHHHHHH---HHHHHTTCCEEEEECBCC-------- T ss_pred HHHHHHHHHHHCC-CCCEEEEC---------CCCC---C---CCHHHHHHH---HHHHHHHCCEEEEECCCCCCCCCCCC T ss_conf 9999998774025-77503523---------4343---4---411799999---99998423124651321455555333 Q ss_pred C----------HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 7----------999999999877885773003366643543010167531024467777443157211478898888766 Q gi|255764463|r 181 G----------RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI 250 (337) Q Consensus 181 G----------rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~ 250 (337) | .+..||.+.+...-.+..|..-+--|. .+ ....|||+-+.... T Consensus 127 ~~~~~~~~~~e~~~ki~aa~~a~~~~d~~i~ARtda~~-----------------~~---------~gl~eAi~Ra~aY~ 180 (295) T 1s2w_A 127 GRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFI-----------------AG---------WGLDEALKRAEAYR 180 (295) T ss_dssp CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTT-----------------TT---------CCHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHCCC-----------------CC---------CCHHHHHHHHHHHH T ss_conf 44445457999999988777632686315753111024-----------------58---------99999999999998 Q ss_pred HCCCCEEEECCCHHHHHHHHHHHHHCC--CCEEEEE Q ss_conf 408987995531145899999996249--9899993 Q gi|255764463|r 251 QESADMLLVKPGLPYLDVCFRIKEKFG--LPTFAYQ 284 (337) Q Consensus 251 ~EGAD~lMVKPa~~yLDii~~~k~~~~--~P~~aYq 284 (337) +-|||+++|-...+..+.+..+..... +|+.+-. T Consensus 181 eAGAD~ifv~~~~~~~e~~~~~~~~~~~~~p~~~~~ 216 (295) T 1s2w_A 181 NAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVP 216 (295) T ss_dssp HTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEECC T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCCHHEEEEC T ss_conf 369975760355675888999886214542203321 No 45 >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} Probab=82.13 E-value=2.3 Score=22.23 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=61.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|++.+.+++...+-. +-+.++ -.+.++...+... .+.|++=++ ..| T Consensus 28 g~ID~~~l~~~i~~l~~~Gv~Gi~~~GstGE~~-----~Ls~~E---r~~l~~~~~~~~~~~~~vi~g~~--~st----- 92 (316) T 3e96_A 28 GSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFY-----ALSLEE---AKEEVRRTVEYVHGRALVVAGIG--YAT----- 92 (316) T ss_dssp CCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGG-----GSCHHH---HHHHHHHHHHHHTTSSEEEEEEC--SSH----- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-----HCCHHH---HHHHHHHHHHHHCCCCEEEECCC--CCH----- T ss_conf 789999999999999975999899685623454-----589999---99999999998089842883565--448----- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC---CCCHHHHHHHHHHHCCCCCCCEECH Q ss_conf 00136544628999999999999996289735---24667---6779999999998778857730033 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII---APSEM---MDGRVQEIRKKLDSHGHINVGIMPY 203 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM---MDGrV~aIR~~Ld~~g~~~~~ImsY 203 (337) .++ .++|-..+++|+|.| .|.-. -|+-+...++..++. +.+|+-| T Consensus 93 ----------~~~----i~~a~~a~~~Gad~i~v~pP~~~~~~~~~i~~~f~~ia~a~---~lpiiiY 143 (316) T 3e96_A 93 ----------STA----IELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL---DFPSLVY 143 (316) T ss_dssp ----------HHH----HHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH---TSCEEEE T ss_pred ----------HHH----HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEC T ss_conf ----------999----99998999759999983587567899899999999999983---6870100 No 46 >3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Probab=81.65 E-value=3 Score=21.40 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=92.6 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH Q ss_conf 79999999997301447986133271001143100136544628999999999999996289735246676779999999 Q gi|255764463|r 109 LINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRK 188 (337) Q Consensus 109 lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~ 188 (337) -+..+++.+...-+|.+++. |--.-...|. .....+.+. ..+..|.-++.|+ .++.+ T Consensus 54 ~l~~aa~~l~~~~~d~I~~g--CTs~s~~~G~------------~~~~~~~~~--i~~~~g~pv~t~~-------~A~~~ 110 (240) T 3ixl_A 54 SVVDHARRLQKQGAAVVSLM--CTSLSFYRGA------------AFNAALTVA--MREATGLPCTTMS-------TAVLN 110 (240) T ss_dssp GHHHHHHHHHHTTEEEEEEC--CHHHHHTTCH------------HHHHHHHHH--HHHHHSSCEEEHH-------HHHHH T ss_pred HHHHHHHHHCCCCCCEEEEC--CCHHHHHCCC------------HHHHHHHHH--HHHCCCCCEECHH-------HHHHH T ss_conf 99999998525799999976--8689995271------------679999998--8745799610679-------99999 Q ss_pred HHHHCCCCCCCEEC-HHHHHHHHHHCCHHHHH---HCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEECC Q ss_conf 99877885773003-36664354301016753---102446--7777443157211478898888766408987-99553 Q gi|255764463|r 189 KLDSHGHINVGIMP-YVAKFNSSFYGPYRDAI---STRDLL--KGDKKTYYLDPANVQEAIREASIDIQESADM-LLVKP 261 (337) Q Consensus 189 ~Ld~~g~~~~~Ims-YsaKfaS~fYgPFRdA~---~S~p~~--~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~-lMVKP 261 (337) +|..-|...+.+.+ |..--.-....-|.+.- .+...| .++..-...++....++.++...|. .++|. ++.=- T Consensus 111 Al~~lg~krIav~tPY~~~~~~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pd~daI~iscT 189 (240) T 3ixl_A 111 GLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAA-PDSDGILLSSG 189 (240) T ss_dssp HHHHTTCSEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTS-TTCSEEEEECT T ss_pred HHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEECHHHHHHHHHHHHHCC-CCCCEEEEECC T ss_conf 99980998645436764899999999999739862322355677665332347877999999987338-88768998578 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH Q ss_conf 11458999999962499899993461899999999 Q gi|255764463|r 262 GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAAS 296 (337) Q Consensus 262 a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~ 296 (337) +|+.+++|.++.+.+++||. |--.++++++- T Consensus 190 ~~~t~~~i~~lE~~lg~PVi----ssn~a~~W~~L 220 (240) T 3ixl_A 190 GLLTLDAIPEVERRLGVPVV----SSSPAGFWDAV 220 (240) T ss_dssp TSCCTTHHHHHHHHHSSCEE----EHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCEE----EHHHHHHHHHH T ss_conf 86188999999999898999----72999999999 No 47 >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Probab=80.42 E-value=3.3 Score=21.13 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=75.2 Q ss_pred HCCCCCHHHC--CCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 3477888773--31166675898811048887863288999999999999888936763302563345544542157653 Q gi|255764463|r 31 REHRLSVSDL--ILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN 108 (337) Q Consensus 31 ~Et~Ls~~dL--I~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg 108 (337) +|+..+ ..| |+|..++.=. . -.+...+.+.+.++.+.+.|++.|.+++...+. .+++.+ T Consensus 27 ~~~~m~-~~~~Gv~~~~~TPF~-~---------dg~ID~~~l~~~i~~li~~Gv~Gi~v~GstGE~-------~~Lt~~- 87 (332) T 2r8w_A 27 RETDMA-TRFKGLSAFPITPAD-E---------AGRVDIEAFSALIARLDAAEVDSVGILGSTGIY-------MYLTRE- 87 (332) T ss_dssp ---CGG-GGGCEEEECCCCCBC-T---------TCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTG-------GGSCHH- T ss_pred CCCCCH-HCCCEEEEEEECCCC-C---------CCCCCHHHHHHHHHHHHHCCCCEEEECEECCCH-------HHCCHH- T ss_conf 247501-126556785626668-8---------758599999999999997799999978214344-------248999- Q ss_pred HHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCCC---CC Q ss_conf 79999999997301-447986133271001143100136544628999999999999996289735---246676---77 Q gi|255764463|r 109 LINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII---APSEMM---DG 181 (337) Q Consensus 109 lv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdMM---DG 181 (337) =-.+.++...+..+ .+-|++-|. + .+.+.-.++|....++|||.| .|.--- |+ T Consensus 88 Er~~l~~~~~~~~~gr~pvi~gv~--------~------------~s~~~ai~~ak~a~~~Gad~v~v~~P~~~~~~~~~ 147 (332) T 2r8w_A 88 ERRRAIEAAATILRGRRTLMAGIG--------A------------LRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEE 147 (332) T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEC--------C------------SSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECC--------C------------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHH T ss_conf 999999999998389972999468--------6------------77899999998886569986996586346555589 Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 99999999987788577300336664 Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAKF 207 (337) Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaKf 207 (337) .+..-++..+. .+.+|+-|-... T Consensus 148 i~~~f~~ia~~---~~~PiiiYn~P~ 170 (332) T 2r8w_A 148 AYHHFAAVAGA---TALPLAIYNNPT 170 (332) T ss_dssp HHHHHHHHHHH---CSSCEEEECCHH T ss_pred HHHHHHHHHHH---CCCEEEEEECCC T ss_conf 99999999860---364389981565 No 48 >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1 Probab=80.26 E-value=3.4 Score=21.09 Aligned_cols=94 Identities=17% Similarity=0.308 Sum_probs=43.9 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCC Q ss_conf 99999999888936763302563345544542157653799999999973014479861332710011431001365446 Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIV 150 (337) Q Consensus 71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~Id 150 (337) .+.++.+++.|+..|.+ +-. +.+ .-.+.++++.||+.||++-||+--|.. T Consensus 239 ~eRa~~Lv~aGvD~ivI----D~A-------hgh--s~~~~~~i~~ik~~~~~~~viaGnv~t----------------- 288 (494) T 1vrd_A 239 MERVEKLVKAGVDVIVI----DTA-------HGH--SRRVIETLEMIKADYPDLPVVAGNVAT----------------- 288 (494) T ss_dssp HHHHHHHHHTTCSEEEE----CCS-------CCS--SHHHHHHHHHHHHHCTTSCEEEEEECS----------------- T ss_pred HHHHHHHHHCCCCEEEE----ECC-------CCC--HHHHHHHHHHHHHHCCCCCEEEEEECC----------------- T ss_conf 89999999769989999----546-------643--799999999999868998679753242----------------- Q ss_pred HHHHHHHHHHHHHHHHHCCCCEE----ECCCCC---------CCHHHHHHHHHHHCCCCCCCEEC Q ss_conf 28999999999999996289735----246676---------77999999999877885773003 Q gi|255764463|r 151 NDETIELISHAAVIQADAGADII----APSEMM---------DGRVQEIRKKLDSHGHINVGIMP 202 (337) Q Consensus 151 ND~Tl~~L~k~Al~~A~AGaDiv----APSdMM---------DGrV~aIR~~Ld~~g~~~~~Ims 202 (337) .+.|..+.+||||.| +|-.+- -.+..+|++..+.....+++|++ T Consensus 289 --------~~~a~~L~~aGad~i~VGiG~Gs~CtTr~~~g~g~pq~sav~~~~~~~~~~~v~iiA 345 (494) T 1vrd_A 289 --------PEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIA 345 (494) T ss_dssp --------HHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEE T ss_pred --------HHHHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCEEEE T ss_conf --------999999998398888854117866226230044621788999999998655966993 No 49 >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 2abb_A* 1vys_X* 1vyp_X* Probab=80.26 E-value=3.4 Score=21.09 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=94.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-H Q ss_conf 999999999999888936763302-----------5633455445421576537999999999730144798613327-1 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPN-----------IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD-P 134 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~-----------I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc-~ 134 (337) ++.-.+.++.+.+.|.-.|-|... .-+.-+|+.|-.--|---++...|++||+.+|+-.|..-+... . T Consensus 160 i~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFlSp~~N~RtDeYGGsleNR~Rf~~Eii~aIR~~~g~d~i~~~~~~~~~ 239 (364) T 1vyr_A 160 VNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGT 239 (364) T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSC T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCEEHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 99999999999983988678502762005333377578998888998899999999999999987086655778850323 Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC Q ss_conf 00114310013654462899999999999999628973524667677999999999877885773003366643543010 Q gi|255764463|r 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337) Q Consensus 135 YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337) +.+ +.++-. +.+...+++-.+.++|.|.+--|..- + +....|...|... T Consensus 240 ~~~------~~~g~~----~~~e~~~~~~~l~~~g~d~~~~s~~~---------------~------~~~~~~~~~~~~~ 288 (364) T 1vyr_A 240 FQN------VDNGPN----EEADALYLIEELAKRGIAYLHMSETD---------------L------AGGKPYSEAFRQK 288 (364) T ss_dssp BTT------BCCCTT----HHHHHHHHHHHHHHTTCSEEEEECCB---------------T------TBCCCCCHHHHHH T ss_pred CCC------CCCCCC----CHHHHHHHHHHHHHCCCEEEEECCCC---------------C------CCCCCCHHHHHHH T ss_conf 244------323675----07999999999986598499941477---------------7------7787630999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEE-EECCCHHHHHHHHHHHHHCC Q ss_conf 167531024467777443157211478898888766408-9879-95531145899999996249 Q gi|255764463|r 215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES-ADML-LVKPGLPYLDVCFRIKEKFG 277 (337) Q Consensus 215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG-AD~l-MVKPa~~yLDii~~~k~~~~ 277 (337) .|++++ .|-..+.+ +++. .++.-++|| ||+| |-.|-+.-=|.++++++.-. T Consensus 289 i~~~~~-~~vi~~g~----~t~~-------~ae~~l~~G~aDlV~~gR~liadPd~~~K~~~g~~ 341 (364) T 1vyr_A 289 VRERFH-GVIIGAGA----YTAE-------KAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAE 341 (364) T ss_dssp HHHHCC-SEEEEESS----CCHH-------HHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCC T ss_pred HHHHCC-CEEEECCC----CCHH-------HHHHHHHCCCCCEEHHHHHHHHCCHHHHHHHHCCC T ss_conf 999738-61996689----9999-------99999987997456553898869499999980899 No 50 >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Probab=79.82 E-value=3.2 Score=21.22 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=14.9 Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEE-EEC Q ss_conf 28899999999999-9888936763-302 Q gi|255764463|r 64 RMSIDVAVEKIKQV-ADLGIPAIAI-FPN 90 (337) Q Consensus 64 R~Sid~L~~eie~~-~~lGI~av~L-Fp~ 90 (337) +++.+..++-++.+ -++||..|=+ ||. T Consensus 37 ~fs~e~k~~i~~~lL~~~Gv~~IEvG~~~ 65 (337) T 3ble_A 37 SFSTSEKLNIAKFLLQKLNVDRVEIASAR 65 (337) T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEETT T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 98999999999999998497989978876 No 51 >1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} SCOP: c.1.10.1 Probab=79.71 E-value=3.5 Score=20.98 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=74.7 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCC Q ss_conf 32889999999999998889367633025633455445421576537999999999730-14479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHc 141 (337) .+...+.+.+.++.+.+.|+.++.+++...+-.. -..++- .+.++...+.. +...|++-| |+ T Consensus 30 g~iD~~~l~~~i~~l~~~Gv~Gi~v~G~tGE~~~-----Ls~~Er---~~l~~~~~~~~~~~~~vi~gv--------~~- 92 (303) T 1xxx_A 30 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPT-----TTDGEK---IELLRAVLEAVGDRARVIAGA--------GT- 92 (303) T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTT-----SCHHHH---HHHHHHHHHHHTTTSEEEEEC--------CC- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHH-----CCHHHH---HHHHHHHHHHHCCCCCEEEEC--------CC- T ss_conf 6919999999999999779998997813465776-----879999---999999999928987489845--------76- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH-HCC-HH Q ss_conf 00136544628999999999999996289735---24667677999999999877885773003366643543-010-16 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII---APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF-YGP-YR 216 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f-YgP-FR 216 (337) .+.+.-.+.|....++|+|.| .|.-.--..-..++-.-+-....+.+|+=|-....+.+ +.| +. T Consensus 93 -----------~s~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~ia~~~~~pi~iyn~P~~~g~~~s~~~~ 161 (303) T 1xxx_A 93 -----------YDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTI 161 (303) T ss_dssp -----------SCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHH T ss_pred -----------CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH T ss_conf -----------668999999999997169869994575789899999999999997169988999787535777698999 Q ss_pred HHHHCCCCCCCCCCC Q ss_conf 753102446777744 Q gi|255764463|r 217 DAISTRDLLKGDKKT 231 (337) Q Consensus 217 dA~~S~p~~~gdr~s 231 (337) ..+...|.+.|=|.+ T Consensus 162 ~~L~~~~~v~giK~s 176 (303) T 1xxx_A 162 RALASHPNIVGVKDA 176 (303) T ss_dssp HHHHTSTTEEEEEEC T ss_pred HHHCCCCCEEECCCC T ss_conf 996569995124567 No 52 >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A* Probab=79.63 E-value=3.5 Score=20.96 Aligned_cols=117 Identities=13% Similarity=0.106 Sum_probs=67.3 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-C-CCEEEECCCCCHHHCCCCC Q ss_conf 2889999999999998889367633025633455445421576537999999999730-1-4479861332710011431 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-P-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-p-dl~vi~DVcLc~YT~hGHc 141 (337) +...+.+.+.++.+.+.|+..+.+++...+-. +-+.++ -.+.++.+.+.. + .+.|++-|. T Consensus 24 ~iD~~~l~~~i~~l~~~Gv~gl~v~G~tGE~~-----~Ls~~E---r~~l~~~~~~~~~~~~~~vi~gv~---------- 85 (301) T 3m5v_A 24 KVDEQSYARLIKRQIENGIDAVVPVGTTGESA-----TLTHEE---HRTCIEIAVETCKGTKVKVLAGAG---------- 85 (301) T ss_dssp EECHHHHHHHHHHHHHTTCCEEECSSTTTTGG-----GSCHHH---HHHHHHHHHHHHTTSSCEEEEECC---------- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-----HCCHHH---HHHHHHHHHHHHCCCCCEEEECCC---------- T ss_conf 78999999999999984999899685213576-----689999---999999999983588763895577---------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH Q ss_conf 001365446289999999999999962897352---4667---677999999999877885773003366643543 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337) . .+.+...+.|...+++|||.|. |.=. -++-+...++..+.. +.+|+-|.....+.+ T Consensus 86 ------~----~~~~~ai~la~~A~~~Gad~i~v~pP~~~~~s~~~~~~~~~~i~~a~---~~pi~iYn~P~~~~~ 148 (301) T 3m5v_A 86 ------S----NATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV---DIPVLLYNVPGRTGC 148 (301) T ss_dssp ------C----SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEEEECHHHHSC T ss_pred ------C----CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCC T ss_conf ------6----67999999999999769999871588889989999999999998617---997899978873576 No 53 >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Probab=79.59 E-value=3.5 Score=20.95 Aligned_cols=232 Identities=16% Similarity=0.074 Sum_probs=113.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC Q ss_conf 87863288999999999999888936763302563345544542157653799999999973014479861332710011 Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH 138 (337) Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337) ..|...++-+.+-..++...+.|+..+-.|. . .|.-..+..++...|+.- ..+.+++|...+. T Consensus 108 ~~g~~~~~~~vv~~~v~~s~~~g~~~~r~~~----~---------~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~ 170 (539) T 1rqb_A 108 LLGYRHYNDEVVDRFVDKSAENGMDVFRVFD----A---------MNDPRNMAHAMAAVKKAG----KHAQGTICYTISP 170 (539) T ss_dssp TTSSSCCCHHHHHHHHHHHHHTTCCEEEECC----T---------TCCTHHHHHHHHHHHHTT----CEEEEEEECCCST T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCHHHCCCC----H---------HHHHHHHHHHHHHHHHCC----CEEEEEEEECCCC T ss_conf 3243237788999999999984516661686----7---------999998899999999769----9568999955788 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC--------HHHHHHHHHHHC---C--CCCCCEECHHH Q ss_conf 4310013654462899999999999999628973524667677--------999999999877---8--85773003366 Q gi|255764463|r 139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG--------RVQEIRKKLDSH---G--HINVGIMPYVA 205 (337) Q Consensus 139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG--------rV~aIR~~Ld~~---g--~~~~~ImsYsa 205 (337) - .|++.+.+.+-...++|||.|+-.||.-. .|.++|+.+-.. + +.|+.=|+-+. T Consensus 171 ~-------------~~~~~~~~~a~~l~~~Gad~I~l~Dt~G~~~P~~v~~lv~~lk~~~~~~~~i~~H~Hnt~Gla~An 237 (539) T 1rqb_A 171 V-------------HTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVS 237 (539) T ss_dssp T-------------CCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHH T ss_pred C-------------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH T ss_conf 7-------------789999999999872598789955866665899999999999986586443256634887629999 Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHCCCCEEEECCCHHHHHHHHHHHHHCCCC---- Q ss_conf 6435430101675310244677774431572114788988887--6640898799553114589999999624998---- Q gi|255764463|r 206 KFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI--DIQESADMLLVKPGLPYLDVCFRIKEKFGLP---- 279 (337) Q Consensus 206 KfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~--D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P---- 279 (337) =++..-.|- |.++++=..-|. .+.|-+ -|.+..... ..+-|-|+-.+...-.|+.-++..=..|.-+ T Consensus 238 ~laAieaGa--d~vD~ai~glGg-~tgnp~----~E~vv~~L~~~g~~t~id~~~l~~i~~~~~~~r~~y~~~~~~~~~~ 310 (539) T 1rqb_A 238 LMKAIEAGV--DVVDTAISSMSL-GPGHNP----TESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLVD 310 (539) T ss_dssp HHHHHHTTC--SEEEEBCGGGCS-TTSBCB----HHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCC T ss_pred HHHHHHCCC--CEEEECCCCCCC-CCCCCC----HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 999998599--999968656788-888976----9999999863898887689999999999999998743576544566 Q ss_pred --EEEEECC-HHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHCCCEE-EECHH Q ss_conf --9999346-189999999-988897889999999999977269999-82018 Q gi|255764463|r 280 --TFAYQVS-GEYAMIKAA-SLQGWINKNDAMMESLLAFKRAGCDGI-FTYFA 327 (337) Q Consensus 280 --~~aYqVS-GEYami~~a-~~~g~~d~~~~~~E~l~~~kRAGAd~I-itY~A 327 (337) +..+|+- |-|+-+++- .+.|..|.-.-+++-.--.++-.-+.+ +|=+. T Consensus 311 ~~v~~~~~PGG~~snl~~q~~~~g~~~~~~ev~~e~~~v~~~lG~~~~VTP~S 363 (539) T 1rqb_A 311 TSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSS 363 (539) T ss_dssp CTHHHHCCCHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHTTCCCCCTTHH T ss_pred CEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 50133389845035668899867847669999999999999769997306140 No 54 >3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} Probab=79.51 E-value=3.6 Score=20.93 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=43.3 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 889999999999998889367633025633455-445421576537999999999730144 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN-NTGSHIIDPDNLINEGICAIKKNIPNI 124 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd-~~GseA~n~dglv~rAIr~IK~~fpdl 124 (337) ++.+++++++.+|++.|-..+=|.+ +| ++|...++++ ....++..|++..|.| T Consensus 29 itpeEia~~a~~c~~AGAsivHlH~------Rd~~dG~~s~d~~-~y~~ii~~ir~~~~~i 82 (311) T 3e49_A 29 VTPDEVAQASIGAAEAGAAVIHLHA------RDPRDGRPTQDPA-AFAEFLPRIKSNTDAV 82 (311) T ss_dssp CSHHHHHHHHHHHHHHTCSEEEECE------ECTTTCCEECCHH-HHTTHHHHHHHHCCCE T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEE------CCCCCCCCCCCHH-HHHHHHHHHHHHCCCE T ss_conf 9999999999999982652799764------5777899178999-9999999999759953 No 55 >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Probab=78.89 E-value=3.7 Score=20.81 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=58.8 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHCCCEEEECCCCCHHHCCCCC Q ss_conf 32889999999999998889367633025633455445421576537999999-99973014479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGIC-AIKKNIPNIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr-~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|++.|.+++.+.+- .+++.+-- .+.++ .++...| ||+-|+ + T Consensus 42 g~ID~~~~~~~i~~l~~~Gv~Gi~v~GstGE~-------~~Ls~eEr-~~l~~~~v~~rvp---vi~Gv~--------~- 101 (344) T 2hmc_A 42 RTPDFDALVRKGKELIADGMSAVVYCGSMGDW-------PLLTDEQR-MEGVERLVKAGIP---VIVGTG--------A- 101 (344) T ss_dssp SSBCHHHHHHHHHHHHHTTCCCEEESSGGGTG-------GGSCHHHH-HHHHHHHHHTTCC---EEEECC--------C- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCCH-------HHCCHHHH-HHHHHHHHHCCCC---EEEECC--------C- T ss_conf 88299999999999997799999977543205-------45899999-9999999733886---899678--------7- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC---CCCHH-HHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 00136544628999999999999996289735---24667---67799-999999987788577300336664 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII---APSEM---MDGRV-QEIRKKLDSHGHINVGIMPYVAKF 207 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM---MDGrV-~aIR~~Ld~~g~~~~~ImsYsaKf 207 (337) .+.+...+.|....++|||.| .|.-. .++.+ ..-...++.. .+++||-|.... T Consensus 102 -----------~st~eai~~a~~a~~~Gad~vlv~pP~y~~~~~~~~~~~~~~~~i~~a--~~lPi~lYn~P~ 161 (344) T 2hmc_A 102 -----------VNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAA--PEIPAVIYNSPY 161 (344) T ss_dssp -----------SSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHS--TTSCEEEEEBGG T ss_pred -----------CCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEECCCC T ss_conf -----------889999999999998399745415863556641146899988887238--998668851787 No 56 >2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Probab=77.52 E-value=4.1 Score=20.55 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=44.2 Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH--------HCC-CCCCCC---CC Q ss_conf 888936763302563345544542157653799999999973014479861332710--------011-431001---36 Q gi|255764463|r 79 DLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF--------TIH-GHDGIL---CD 146 (337) Q Consensus 79 ~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y--------T~h-GHcGi~---~~ 146 (337) ..+++ +||- + ..+.+-|....+++.- .+.++..-...+|. .||=|.-. ..| |++.++ |+ T Consensus 56 ~~~~p--iI~T-~--R~~~eGG~~~~~~~~~-~~ll~~~~~~~~d~---iDiEl~~~~~~~~~l~~~~~~~~kvI~S~H~ 126 (523) T 2o7s_A 56 KSPLP--TLFT-Y--RPKWEGGQYEGDENER-RDVLRLAMELGADY---IDVELQVASEFIKSIDGKKPGKFKVIVSSHN 126 (523) T ss_dssp HCSSC--EEEE-C--CBGGGTSSBCSCHHHH-HHHHHHHHHHTCSE---EEEEHHHHHHHHHHTTTCCCTTCEEEEEEEC T ss_pred HCCCC--EEEE-E--CCHHHCCCCCCCHHHH-HHHHHHHHHHCCCE---EEEECCCCHHHHHHHHHHHCCCCEEEEEECC T ss_conf 38993--8999-5--7777799988999999-99999999979999---9998888589999999843489879999678 Q ss_pred --CCCCHHHHHHHHHHHHHHHHHCCCCEE----ECCCCCCCHHHHHHHHHHHCC Q ss_conf --544628999999999999996289735----246676779999999998778 Q gi|255764463|r 147 --GEIVNDETIELISHAAVIQADAGADII----APSEMMDGRVQEIRKKLDSHG 194 (337) Q Consensus 147 --g~IdND~Tl~~L~k~Al~~A~AGaDiv----APSdMMDGrV~aIR~~Ld~~g 194 (337) +....+. +..+.+ -..+.|||+| .|.+.-| +..+-+.+.+.+ T Consensus 127 f~~tp~~~~-l~~~~~---~~~~~gadivKia~~~~~~~D--~~~ll~~~~~~~ 174 (523) T 2o7s_A 127 YQNTPSVED-LDGLVA---RIQQTGADIVKIATTAVDIAD--VARMFHITSKAQ 174 (523) T ss_dssp SSCCCCHHH-HHHHHH---HHHTTTCSEEEEEEECSSGGG--HHHHHHHHHHCS T ss_pred CCCCCCHHH-HHHHHH---HHHHHCCCEEEEEECCCCHHH--HHHHHHHHHHCC T ss_conf 999988667-999999---999749996888516799899--999999985179 No 57 >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Probab=76.42 E-value=4.3 Score=20.35 Aligned_cols=148 Identities=15% Similarity=0.149 Sum_probs=77.3 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337) +...+.+.+.++.+.+.|+..+.+++.+.+-. +.+.+- -.+.++...+.... ++.=| T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~-------~Ls~~E-r~~l~~~~~~~~~~--~i~gv------------- 71 (286) T 2r91_A 15 RLDPELFANHVKNITSKGVDVVFVAGTTGLGP-------ALSLQE-KMELTDAATSAARR--VIVQV------------- 71 (286) T ss_dssp EECHHHHHHHHHHHHHTTCCEEEETSTTTTGG-------GSCHHH-HHHHHHHHHHHCSS--EEEEC------------- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-------HCCHHH-HHHHHHHHHHHCCC--EEECC------------- T ss_conf 48999999999999977999999791265610-------289999-99999999974245--12111------------- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCC-----CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH Q ss_conf 136544628999999999999996289735--24667-----67799999999987788577300336664354301016 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADII--APSEM-----MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR 216 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdM-----MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR 216 (337) +....+++ .++|...+++|+|.+ .|.-. .+|-+...|...+. .+++||=|-....+.+ T Consensus 72 ---~~~st~~~----i~~a~~a~~~G~d~i~~~pp~~~~~~~~~~i~~~~~~ia~~---~~~pi~lYn~P~~~g~----- 136 (286) T 2r91_A 72 ---ASLNADEA----IALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSA---VSIPVFLYNYPAAVGR----- 136 (286) T ss_dssp ---CCSSHHHH----HHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHH---CSSCEEEEECHHHHSS----- T ss_pred ---CCCCHHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEECCCCCCCC----- T ss_conf ---24325899----99999999869998986698523468889999999987624---4743776348766130----- Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC Q ss_conf 753102446777744315721147889888876640898799553114589999999624 Q gi|255764463|r 217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF 276 (337) Q Consensus 217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~ 276 (337) -+.+ +.+.+. +.++.+|=+-+-++-+..+++.. T Consensus 137 ----------------~l~~----~l~~~l-------~~i~giK~~~~~~~~~~~~~~~~ 169 (286) T 2r91_A 137 ----------------DVDA----RAAKEL-------GCIRGVKDTNESLAHTLAYKRYL 169 (286) T ss_dssp ----------------CCCH----HHHHHH-------SCEEEEEECCSCHHHHHHHHHHC T ss_pred ----------------CCHH----HHHHHH-------CCEEEEEECCCCHHHHHHHHHCC T ss_conf ----------------3056----777876-------66437984886899999998607 No 58 >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Probab=76.38 E-value=4.4 Score=20.34 Aligned_cols=170 Identities=20% Similarity=0.288 Sum_probs=89.4 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337) ..+++.+++.++++.+ +|-.+- + |..-+...| .+.|+.+++.+|+..++.|.=+ T Consensus 9 ~~~~~~~l~~~~~~~~-~v~~ik----v--------g~~l~~~~G--~~~i~~l~~~~~~~~i~~D~K~----------- 62 (211) T 3f4w_A 9 ELTLPEAMVFMDKVVD-DVDIIE----V--------GTPFLIREG--VNAIKAIKEKYPHKEVLADAKI----------- 62 (211) T ss_dssp SCCHHHHHHHHHHHGG-GCSEEE----E--------CHHHHHHHT--THHHHHHHHHCTTSEEEEEEEE----------- T ss_pred CCCHHHHHHHHHHHCC-CCCEEE----E--------CEEEHHCCC--HHHHHHHHHHCCCCCEEEEEEC----------- T ss_conf 8999999999998179-877999----4--------662042179--8999999985799707988843----------- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC Q ss_conf 13654462899999999999999628973524667677-99999999987788577300336664354301016753102 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG-RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR 222 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG-rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~ 222 (337) .|+..|+. ...+++|||+|.-..-+.- .+.+..++..+.|-. +.+. T Consensus 63 -----~di~~t~~------~~~~~~gad~vtvh~~~g~~~l~~~~~~~~~~~~~-~~v~--------------------- 109 (211) T 3f4w_A 63 -----MDGGHFES------QLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQ-VVVD--------------------- 109 (211) T ss_dssp -----CSCHHHHH------HHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCE-EEEE--------------------- T ss_pred -----CCCHHHHH------HHHHHCCCCEEEEEHHHCHHHHHHHHHHHHHHCCE-EEEE--------------------- T ss_conf -----48688999------99997199999982640667899999998752443-4787--------------------- Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH-------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH Q ss_conf 446777744315721147889888876640898799553114-------5899999996249989999346189999999 Q gi|255764463|r 223 DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP-------YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAA 295 (337) Q Consensus 223 p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~-------yLDii~~~k~~~~~P~~aYqVSGEYami~~a 295 (337) .+.+.+..+..++. .+.|.|++.+.++.. ..+-+..+++.+..... .|+| T Consensus 110 ----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i--~v~g-------- 166 (211) T 3f4w_A 110 ----------MICVDDLPARVRLL---EEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARI--AVAG-------- 166 (211) T ss_dssp ----------CTTCSSHHHHHHHH---HHHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEE--EEES-------- T ss_pred ----------ECCCCCHHHHHHHH---HHCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCCCE--ECCC-------- T ss_conf ----------40899999999987---635889999886225312057699999999997187665--2289-------- Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 98889788999999999997726999982 Q gi|255764463|r 296 SLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 296 ~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337) | +.. |+......+|||++|- T Consensus 167 ---G-i~~-----~~~~~a~~~Gad~iVv 186 (211) T 3f4w_A 167 ---G-ISS-----QTVKDYALLGPDVVIV 186 (211) T ss_dssp ---S-CCT-----TTHHHHHTTCCSEEEE T ss_pred ---C-CCC-----CCHHHHHHCCCCEEEE T ss_conf ---7-060-----5799999859899998 No 59 >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Probab=76.12 E-value=4.4 Score=20.29 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCC Q ss_conf 99999999999962897352466767 Q gi|255764463|r 155 IELISHAAVIQADAGADIIAPSEMMD 180 (337) Q Consensus 155 l~~L~k~Al~~A~AGaDivAPSdMMD 180 (337) .+.+.+++....++|+|.|.-.|++- T Consensus 155 ~~~~~~~~~~~~~~g~d~i~l~Dt~G 180 (298) T 2cw6_A 155 PAKVAEVTKKFYSMGCYEISLGDTIG 180 (298) T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTS T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 89999999999972886346688532 No 60 >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} Probab=75.87 E-value=4.5 Score=20.25 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=50.6 Q ss_pred CEEEECCCCC----EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHH Q ss_conf 1666758988----110488878632889999999999998889367633025633455-44542157653799999999 Q gi|255764463|r 43 PIFLTSGEKT----VESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN-NTGSHIIDPDNLINEGICAI 117 (337) Q Consensus 43 PiFV~eg~~~----k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd-~~GseA~n~dglv~rAIr~I 117 (337) |++|+--.|- |..=|.+| ++.|++.+++..|++.|-..+=|.+ +| .+|..+++++ ....++..| T Consensus 7 ~viIt~A~nGa~~tk~~~P~lP----iTpeEia~~A~~c~~AGAaivHlH~------Rd~~dG~~s~d~~-~y~eii~~i 75 (314) T 3lot_A 7 VVIVTCAITGAIHTPSMSPYLP----VTPDQIVEEAVKAAEAGAGMVHIHA------RDPKDGRPTTDVE-VFRYICREI 75 (314) T ss_dssp EECEEEECSCSSSCGGGCTTSC----CSHHHHHHHHHHHHHHTCSEEEECE------ECTTTCCEECCHH-HHHHHHHHH T ss_pred CEEEEECCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCEEEEEE------CCCCCCCCCCCHH-HHHHHHHHH T ss_conf 5899988889969702299998----9999999999999982652899873------4777798478999-999999999 Q ss_pred HHHHCCCEE Q ss_conf 973014479 Q gi|255764463|r 118 KKNIPNIGI 126 (337) Q Consensus 118 K~~fpdl~v 126 (337) |+.. ++.| T Consensus 76 R~~~-d~ii 83 (314) T 3lot_A 76 KKQS-DVVI 83 (314) T ss_dssp HHHC-CCEE T ss_pred HHCC-CCEE T ss_conf 8659-9589 No 61 >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} Probab=75.40 E-value=4.6 Score=20.17 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=59.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|+..|.+++...+- .+++.+ =-.+.++...+..+ .+-|++-|- T Consensus 20 g~iD~~~~~~~i~~l~~~Gv~gi~~~GttGE~-------~~Ls~~-Er~~~~~~~~~~~~~~~~vi~gv~---------- 81 (300) T 3eb2_A 20 GRVRADVMGRLCDDLIQAGVHGLTPLGSTGEF-------AYLGTA-QREAVVRATIEAAQRRVPVVAGVA---------- 81 (300) T ss_dssp SCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTG-------GGCCHH-HHHHHHHHHHHHHTTSSCBEEEEE---------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCH-------HHCCHH-HHHHHHHHHHHHHCCCCCEEEECC---------- T ss_conf 39799999999999997599989975532436-------559999-999999999986146885899457---------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECH Q ss_conf 001365446289999999999999962897352---4667---6779999999998778857730033 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPY 203 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsY 203 (337) . .+.+...++|-...++|+|.|- |.-. -++-+...+...+. .+.+|+-| T Consensus 82 ------~----~s~~~~i~~a~~a~~~Gad~i~v~pP~~~~~~~~~~~~~~~~va~~---~~~piiiY 136 (300) T 3eb2_A 82 ------S----TSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADA---VEIPVVIY 136 (300) T ss_dssp ------E----SSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHH---CSSCEEEE T ss_pred ------C----CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEE T ss_conf ------6----6488999999777644981798526533577779999999988755---89967987 No 62 >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* Probab=75.16 E-value=4.7 Score=20.13 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=83.7 Q ss_pred HHHHHHHHHHHCCCCEEEEEEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHH Q ss_conf 9999999999888936763302-----------56334554454215765379999999997301-44798613327100 Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIFPN-----------IPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFT 136 (337) Q Consensus 69 ~L~~eie~~~~lGI~av~LFp~-----------I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT 136 (337) ...+.++.+.+.|.-.|-|-.. .-+.-+|+.|-.--|.--++...+++||+.+| |..|..=+..+++- T Consensus 153 ~f~~AA~rA~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtD~YGGs~enR~Rf~~Eii~aIr~~vg~~~~i~~R~s~~d~~ 232 (349) T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG 232 (349) T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS T ss_pred HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 99999999998098914605126799999058876898876787877888999999999999708997289967702146 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH Q ss_conf 11431001365446289999999999999962897352466767799999999987788577300336664354301016 Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR 216 (337) Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR 216 (337) +|-.+.+++++ .+-.+.++|+|.+--|...-. .... +....-|...|-.-.| T Consensus 233 ---------~~g~~~ee~~~----~~~~l~~~g~d~~~~s~~~~~--------------~~~~-~~~~~~~~~~~~~~ik 284 (349) T 3hgj_A 233 ---------EGGWSLEDTLA----FARRLKELGVDLLDCSSGGVV--------------LRVR-IPLAPGFQVPFADAVR 284 (349) T ss_dssp ---------TTSCCHHHHHH----HHHHHHHTTCCEEEEECCCSC--------------SSSC-CCCCTTTTHHHHHHHH T ss_pred ---------CCCCCHHHHHH----HHHHHHHCCCCEEEECCCCCC--------------CCCC-CCCCCCCCHHHHHHHH T ss_conf ---------79987799999----999998759751641256421--------------2434-5667643368999999 Q ss_pred HHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEE-ECCCHHHHHHHHHHHHHC Q ss_conf 753102446-7777443157211478898888766408-98799-553114589999999624 Q gi|255764463|r 217 DAISTRDLL-KGDKKTYYLDPANVQEAIREASIDIQES-ADMLL-VKPGLPYLDVCFRIKEKF 276 (337) Q Consensus 217 dA~~S~p~~-~gdr~sYQmd~~n~~eA~~e~~~D~~EG-AD~lM-VKPa~~yLDii~~~k~~~ 276 (337) .+++ .|.. .|.-. +| -+++.-++|| ||+++ -+|.+.-=|.++++++.- T Consensus 285 ~~~~-ipvi~~G~i~----~~-------e~ae~~l~~g~~D~V~~gR~~iadPdl~~k~~~g~ 335 (349) T 3hgj_A 285 KRVG-LRTGAVGLIT----TP-------EQAETLLQAGSADLVLLGRVLLRDPYFPLRAAKAL 335 (349) T ss_dssp HHHC-CEEEECSSCC----CH-------HHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHHHT T ss_pred HHCC-CCEEEECCCC----CH-------HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHCCC T ss_conf 8759-9689988939----99-------99999998799211598899986906999998089 No 63 >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} Probab=75.07 E-value=4.7 Score=20.11 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=63.5 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|++.+.+++...+.. +++.+ =-.+.++...+..+ ..-|++-|. T Consensus 23 ~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~-------~Ls~~-Er~~l~~~~~~~~~~~~~vi~gv~---------- 84 (297) T 3flu_A 23 GSIHYEQLRDLIDWHIENGTDGIVAVGTTGESA-------TLSVE-EHTAVIEAVVKHVAKRVPVIAGTG---------- 84 (297) T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGG-------GSCHH-HHHHHHHHHHHHHTTSSCEEEECC---------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH-------HCHHH-HHHHHHHHHHHHCCCCCCCCCCCC---------- T ss_conf 596999999999999976999899684156377-------69199-999999999987036555456767---------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCC----CCCHHHHHHHHHHHCCCCCCCEECHHH Q ss_conf 00136544628999999999999996289735--24667----677999999999877885773003366 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII--APSEM----MDGRVQEIRKKLDSHGHINVGIMPYVA 205 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdM----MDGrV~aIR~~Ld~~g~~~~~ImsYsa 205 (337) . .+.+...+.|....++|||.| .|.-. -|+-+...+...|.. +.+|+-|.. T Consensus 85 ---~-------~s~~~~i~~a~~a~~~Gad~v~v~pP~~~~~s~~~i~~~~~~i~~a~---~~pi~lYn~ 141 (297) T 3flu_A 85 ---A-------NNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT---SIPMIIYNV 141 (297) T ss_dssp ---C-------SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEEEEC T ss_pred ---C-------CCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEEC T ss_conf ---5-------63999999999999829987562588788989999999999998547---998899978 No 64 >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* Probab=74.69 E-value=4.8 Score=20.08 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=45.3 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC--CCCCC Q ss_conf 9999999998889367633025633455445421576537999999999730144798613327100114310--01365 Q gi|255764463|r 70 AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG--ILCDG 147 (337) Q Consensus 70 L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG--i~~~g 147 (337) |.+.++.+.++|.+++-+|+.=|.. |+...+-...++.+|+.+.+..+ -+...+.|++.. +.... T Consensus 14 l~~~~~~~~e~G~~~~qif~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~y~~nl~~~d 80 (287) T 2x7v_A 14 FDRVPQDTVNIGGNSFQIFPHNARS---------WSAKLPSDEAATKFKREMKKHGI----DWENAFCHSGYLINLASPK 80 (287) T ss_dssp GGGHHHHHHHTTCSEEEECSCCCSS---------SCCCCCCHHHHHHHHHHHHHHTC----CGGGEEEECCTTCCTTCSS T ss_pred HHHHHHHHHHCCCCEEEEECCCCCC---------CCCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCCCHHHHCCCC T ss_conf 9999999997499999996799878---------88899999999999999998599----8427874263146305999 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 446289999999999999962897352 Q gi|255764463|r 148 EIVNDETIELISHAAVIQADAGADIIA 174 (337) Q Consensus 148 ~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337) .-..+.+++.+.+..-.-++-||+.|- T Consensus 81 ~~~r~~~i~~l~~~i~~a~~LGa~~vv 107 (287) T 2x7v_A 81 DDIWQKSVELLKKEVEICRKLGIRYLN 107 (287) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEE T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 999999999999999999980998053 No 65 >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 Probab=74.69 E-value=4.8 Score=20.05 Aligned_cols=140 Identities=15% Similarity=0.202 Sum_probs=58.6 Q ss_pred ECCCCC-CCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC Q ss_conf 048887-863288999999999999-888936763302563345544542157653799999999973014479861332 Q gi|255764463|r 55 SINSMP-DVMRMSIDVAVEKIKQVA-DLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVAL 132 (337) Q Consensus 55 ~I~SMP-Gv~R~Sid~L~~eie~~~-~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcL 132 (337) -|.-|| |-|..|.+..++.+.+.+ +.|..+|-|-++. + ....|+.|.+. .|-|++-+-| T Consensus 98 ii~DmPf~sy~~s~~~a~~~A~r~~~e~gadavkleg~~--~---------------~~~~I~~L~~~--GIPV~gHiGL 158 (281) T 1oy0_A 98 VVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGE--R---------------VAEQIACLTAA--GIPVMAHIGF 158 (281) T ss_dssp EEEECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBSG--G---------------GHHHHHHHHHH--TCCEEEEEEC T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCH--H---------------HHHHHHHHHHC--CCCEEEEECC T ss_conf 895686533478999999999999997142301324504--0---------------79999999987--9967863046 Q ss_pred CHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECH-HHHHHHHH Q ss_conf 71001143100136544628999999999999996289735246676779999999998778857730033-66643543 Q gi|255764463|r 133 DPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPY-VAKFNSSF 211 (337) Q Consensus 133 c~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsY-saKfaS~f 211 (337) -|.+.+---|.-..|+ +++. ..|.+.|..+-+|||..|--..+=.---+.|.+. .+++..+. |.+++..= T Consensus 159 tPQ~~~~~Gg~rv~gk--~~~a-~~l~~da~~le~AGa~~ivlE~VP~~lA~~It~~------l~IPtIGIGaG~~cDGQ 229 (281) T 1oy0_A 159 TPQSVNTLGGFRVQGR--GDAA-EQTIADAIAVAEAGAFAVVMEMVPAELATQITGK------LTIPTVGIGAGPNCDGQ 229 (281) T ss_dssp CC----------------CHHH-HHHHHHHHHHHHHTCSEEEEESCCHHHHHHHHHH------CSSCEEEESSCSCSSEE T ss_pred CHHHHHCCCCCCCCCH--HHHH-HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH------CCCEEEEECCCCCCCEE T ss_conf 7366301487630452--7888-8899999999837980887734736789999851------78238950468988678 Q ss_pred HCCHHHHHHCC Q ss_conf 01016753102 Q gi|255764463|r 212 YGPYRDAISTR 222 (337) Q Consensus 212 YgPFRdA~~S~ 222 (337) |==+-|.+|-. T Consensus 230 vLV~~DiLG~~ 240 (281) T 1oy0_A 230 VLVWQDMAGFS 240 (281) T ss_dssp EECHHHHTTCS T ss_pred EEEHHHHHCCC T ss_conf 88398650899 No 66 >3bsm_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9262H, clone 9262H1BCT8P1; 2.20A {Chromohalobacter salexigens dsm 3043} Probab=73.99 E-value=5 Score=19.94 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=78.6 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC------------------CCCCC---C Q ss_conf 89881104888786328899999999999988893676330256334554454------------------21576---5 Q gi|255764463|r 49 GEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS------------------HIIDP---D 107 (337) Q Consensus 49 g~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs------------------eA~n~---d 107 (337) |-..++.|+.--.....+.+.+++++++..+.|.++|-+=.+.+. .++..+. ..|.. - T Consensus 112 GG~~r~~i~~ya~~~~~~~~~~~~~~~~~~~~G~~~~Kikvg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (413) T 3bsm_A 112 GGKSRERVMTYAHCTGQTIEDCLGEVARHVELGYRAVRVQSGVPG-IETTYGVAKTPGERYEPADSSLPAEHVWSTEKYL 190 (413) T ss_dssp TCCSCSSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCCC-----------------------------CHHHHH T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 886551357776337887699999999999759751565427872-0121111127400047433356522334426678 Q ss_pred CHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCC---------CCCC--CCC-CCCHHHHHHHHHH-------------- Q ss_conf 37999999999730-1447986133271001143---------1001--365-4462899999999-------------- Q gi|255764463|r 108 NLINEGICAIKKNI-PNIGIITDVALDPFTIHGH---------DGIL--CDG-EIVNDETIELISH-------------- 160 (337) Q Consensus 108 glv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGH---------cGi~--~~g-~IdND~Tl~~L~k-------------- 160 (337) ....+.++++++.+ |++.++.|. -+.||...= .++. .+- ..++-+.+..|.+ T Consensus 191 ~~~~~~v~air~~~G~~~~l~vDa-N~~~~~~~A~~~~~~l~~~~l~w~EeP~~~~d~~~~~~l~~~~~ipIa~gE~~~~ 269 (413) T 3bsm_A 191 NHAPKLFAAVRERFGDDLHVLHDV-HHRLTPIEAARLGKAVEPYHLFWLEDCVPAENQESLRLIREHTTTPLAIGEVFNS 269 (413) T ss_dssp HHHHHHHHHHHHHHCSSSEEEEEC-TTCSCHHHHHHHHHHTGGGCCSEEECCSCCSSGGGGHHHHHHCCSCEEECTTCCS T ss_pred HHHHHHHHHHHHHHCCCCCEEECC-CCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 889999999999819764321355-4555568899999986223400353875547887889999851788105756554 Q ss_pred --HHHHHHHCC-CCEEECCCCCCCHHHHHHHHHHHCCCCCCCEE Q ss_conf --999999628-97352466767799999999987788577300 Q gi|255764463|r 161 --AAVIQADAG-ADIIAPSEMMDGRVQEIRKKLDSHGHINVGIM 201 (337) Q Consensus 161 --~Al~~A~AG-aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Im 201 (337) ....+.+.| +|++-|--+--|-+...++..+-..-.++.++ T Consensus 270 ~~~~~~li~~~a~dii~~d~~~~GGit~~~~ia~lA~~~gi~v~ 313 (413) T 3bsm_A 270 IHDCRELIQNQWIDYIRMPLTHGGGITAMRRVADLASLYHVRTG 313 (413) T ss_dssp GGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEC T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 28899998753588773575346879999999999998699487 No 67 >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} Probab=73.72 E-value=5.1 Score=19.89 Aligned_cols=117 Identities=11% Similarity=0.089 Sum_probs=66.8 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCC Q ss_conf 2889999999999998889367633025633455445421576537999999999730-144798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+.+.|+.++.+.+...+- -+-+.++-- +.++...+.. +++-|++-| |+ T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~-----~~Ls~~Er~---~l~~~~~~~~~~~~~vi~gv--------~~-- 78 (297) T 2rfg_A 17 QVDEKALAGLVDWQIKHGAHGLVPVGTTGES-----PTLTEEEHK---RVVALVAEQAQGRVPVIAGA--------GS-- 78 (297) T ss_dssp EECHHHHHHHHHHHHHTTCSEEECSSGGGTG-----GGSCHHHHH---HHHHHHHHHHTTSSCBEEEC--------CC-- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCH-----HHCCHHHHH---HHHHHHHHHCCCCCEEEEEC--------CC-- T ss_conf 6899999999999997799999979233145-----348999999---99999899718997099968--------86-- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCC---CCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH Q ss_conf 01365446289999999999999962897352---466---7677999999999877885773003366643543 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIA---PSE---MMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSd---MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337) .+.+...+.|...+++|+|.|. |+- --++-+..-++..+.. +++|+=|.....+.+ T Consensus 79 ----------~~~~~ai~~a~~a~~~G~d~i~~~~P~~~~~~~~~~~~~f~~i~~a~---~iPi~lYn~P~~~g~ 140 (297) T 2rfg_A 79 ----------NNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI---DIPIIVYNIPPRAVV 140 (297) T ss_dssp ----------SSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC---SSCEEEEECHHHHSC T ss_pred ----------HHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCC T ss_conf ----------01999999999999809998970688788989999999999999867---997899978741477 No 68 >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Probab=73.50 E-value=5.1 Score=19.86 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=66.2 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301-44798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+.+.|+..+.+++...+- -+-+.++. .+.++.+.+..+ .+.|+.- T Consensus 33 ~iD~~~~~~~i~~li~~Gv~Gi~v~G~tGE~-----~~Ls~~Er---~~l~~~~~~~~~~~~~vi~g------------- 91 (304) T 3cpr_A 33 DIDIAAGREVAAYLVDKGLDSLVLAGTTGES-----PTTTAAEK---LELLKAVREEVGDRAKLIAG------------- 91 (304) T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEESSTTTTT-----TTSCHHHH---HHHHHHHHHHHTTTSEEEEE------------- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEEHHHH-----HHCCHHHH---HHHHHHHHHHHCCCCCEEEE------------- T ss_conf 9499999999999997699989978551415-----55899999---99999999983688767862------------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH Q ss_conf 0136544628999999999999996289735---24667---677999999999877885773003366643543 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADII---APSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337) +... +.+.-.+.+-...++|||.| .|.-. -++-+...++..+. .+.+|+-|-.-..+.+ T Consensus 92 ~~~~-------s~~~~i~~a~~a~~~Gad~i~v~pP~~~~~~~~~i~~~~~~v~~a---~~~pi~~y~~p~~~g~ 156 (304) T 3cpr_A 92 VGTN-------NTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAA---TEVPICLYDIPGRSGI 156 (304) T ss_dssp CCCS-------CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEEECHHHHSS T ss_pred CCCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCCCC T ss_conf 5741-------299999999999973999999889877898999999999999973---5997677635543488 No 69 >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Probab=72.83 E-value=5.3 Score=19.76 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=21.6 Q ss_pred HHHHHHHHHCCCCEEEEEEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 99999999888936763302-----------56334554454215765379999999997301 Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFPN-----------IPMDLRNNTGSHIIDPDNLINEGICAIKKNIP 122 (337) Q Consensus 71 ~~eie~~~~lGI~av~LFp~-----------I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp 122 (337) .+.++.+.+.|.-.|-|-.. .-+.-+|+.|-.--|.--++...+++||+..+ T Consensus 147 ~~AA~rA~~aGfDGVEIH~ahGyLl~qFlSp~~N~R~DeYGGs~enR~Rf~~Eii~avr~~v~ 209 (338) T 1z41_A 147 KQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWD 209 (338) T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 999999998199806576668889999639402856786777777878899999999999854 No 70 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Probab=72.45 E-value=5.4 Score=19.70 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=45.6 Q ss_pred CCCCCCHHHH-----HHHHHHHHHHCCCCEEEECC-------CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCC Q ss_conf 3157211478-----89888876640898799553-------11458999999962499899993461899999999888 Q gi|255764463|r 232 YYLDPANVQE-----AIREASIDIQESADMLLVKP-------GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQG 299 (337) Q Consensus 232 YQmd~~n~~e-----A~~e~~~D~~EGAD~lMVKP-------a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g 299 (337) ||.-..+.++ ++--+..-++-||--+++-- -.+-|++++.+++.+++|+.| || | T Consensus 439 ~~v~~~ggr~~t~~~~~~~~~~~~~~GaGEIlltsId~DGt~~G~Dl~l~~~i~~~~~iPvIa---sG-----------G 504 (555) T 1jvn_A 439 YQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIA---SS-----------G 504 (555) T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEE---CS-----------C T ss_pred EEEEECCCEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EC-----------C T ss_conf 999971880628999999999999669989999625477888876999999999758989999---78-----------9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEC--------HHHHHHHHHHC Q ss_conf 97889999999999977269999820--------18999999850 Q gi|255764463|r 300 WINKNDAMMESLLAFKRAGCDGIFTY--------FAMEAARILTH 336 (337) Q Consensus 300 ~~d~~~~~~E~l~~~kRAGAd~IitY--------~A~~~a~~L~~ 336 (337) .-+.++ +.| .|+.+|++.++.= --.++.++|++ T Consensus 505 ~g~~~d-i~~---~~~~~~~~av~~~s~fh~~~~~i~~~K~~L~~ 545 (555) T 1jvn_A 505 AGVPEH-FEE---AFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 545 (555) T ss_dssp CCSHHH-HHH---HHHHSCCSEEEESHHHHTTSCCHHHHHHHHHH T ss_pred CCCHHH-HHH---HHHHCCCEEEEEEHHHHCCCCCHHHHHHHHHH T ss_conf 899999-999---99868974998800667799899999999998 No 71 >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Probab=72.45 E-value=5.4 Score=19.70 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=46.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCH-H--HHHHHHHHHCCC----------CCHH Q ss_conf 47889888876640898799553114589999999624-99899993461-8--999999998889----------7889 Q gi|255764463|r 239 VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSG-E--YAMIKAASLQGW----------INKN 304 (337) Q Consensus 239 ~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSG-E--Yami~~a~~~g~----------~d~~ 304 (337) -.|||+-.....+-|||++++- ++..+|-++.+.+.+ ..|+.+=.+.| . +--+.-..+.|+ .--- T Consensus 169 ~~eaI~R~~aY~~AGAD~if~~-g~~~~~~~~~i~~~~~~~pl~~n~~~~g~tp~ls~~eL~~lGv~~v~~~~~~~raa~ 247 (302) T 3fa4_A 169 YEESVARLRAARDAGADVGFLE-GITSREMARQVIQDLAGWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAALGPAV 247 (302) T ss_dssp HHHHHHHHHHHHTTTCSEEEET-TCCCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTTTHHHHH T ss_pred HHHHHHHHHHHHHCCCCCEEEE-CCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHCCCCEEEECHHHHHHHH T ss_conf 9999999998553488826641-466267789999972489721013337999988999999779989997739999999 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 9999999999772699 Q gi|255764463|r 305 DAMMESLLAFKRAGCD 320 (337) Q Consensus 305 ~~~~E~l~~~kRAGAd 320 (337) +++.+.+..+++-|-. T Consensus 248 ~a~~~~l~~l~~~G~~ 263 (302) T 3fa4_A 248 AAMREAMEKLKRDGIP 263 (302) T ss_dssp HHHHHHHHHHHHHSSC T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999999974997 No 72 >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 Probab=72.35 E-value=1.4 Score=23.66 Aligned_cols=93 Identities=15% Similarity=0.283 Sum_probs=53.1 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337) ..+..+++++.+.+++=+- ++ +||-. + .| .++++.+++. .+-+-+-.|++ T Consensus 64 ~~~~mi~~A~~l~~~~~ni--~v-KIP~t---~--------~g--~~a~~~L~~~--Gi~vn~Tav~s------------ 113 (220) T 1l6w_A 64 TAEGMVNDALKLRSIIADI--VV-KVPVT---A--------EG--LAAIKMLKAE--GIPTLGTAVYG------------ 113 (220) T ss_dssp SHHHHHHHHHHHHHHSTTC--EE-EEECS---H--------HH--HHHHHHHHHH--TCCEEEEEECS------------ T ss_pred CHHHHHHHHHHHHHHCCCC--EE-EEECC---H--------HH--HHHHHHHHHC--CCCEEEECCCC------------ T ss_conf 6777899999999728675--89-95062---7--------57--8999998873--93288400187------------ Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-CCC-----C--CHHHHHHHHHHHCCCCCCCEEC Q ss_conf 6544628999999999999996289735246-676-----7--7999999999877885773003 Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAPS-EMM-----D--GRVQEIRKKLDSHGHINVGIMP 202 (337) Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-dMM-----D--GrV~aIR~~Ld~~g~~~~~Ims 202 (337) ..||+.-|++||++|+|= +-| | ..|..|++.++.+|+. +-||. T Consensus 114 -------------~~Qa~~Aa~aga~yvsp~~gR~~d~g~dg~~~i~~~~~~~~~~~~~-tkIl~ 164 (220) T 1l6w_A 114 -------------AAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQ-AKVLA 164 (220) T ss_dssp -------------HHHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHCTT-CEEEE T ss_pred -------------HHHHHHHHHCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHCCCC-EEEEE T ss_conf -------------9999999972557075554224524688689999999999835898-09998 No 73 >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Probab=72.24 E-value=5.5 Score=19.67 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=11.6 Q ss_pred HHHHHHHHHCCCCEE Q ss_conf 999999996289735 Q gi|255764463|r 159 SHAAVIQADAGADII 173 (337) Q Consensus 159 ~k~Al~~A~AGaDiv 173 (337) .++|.-+.++|||.| T Consensus 195 ~e~a~~L~~aGAD~V 209 (400) T 3ffs_A 195 EEATKELIENGADGI 209 (400) T ss_dssp HHHHHHHHHTTCSEE T ss_pred HHHHHHHHHCCCCEE T ss_conf 999999998099856 No 74 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Probab=72.14 E-value=4.2 Score=20.45 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=72.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC Q ss_conf 99999999999988893676330256334554454215765379999999997301447986133271001143100136 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD 146 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~ 146 (337) .+..++.++-+.+.||+.+=+=-- ++ + .-.+|+.++++||++.|=+ T Consensus 37 ~~~a~~~a~al~~~Gi~~iEitl~------tp--------~--a~e~i~~l~~~~p~~~iGa------------------ 82 (225) T 1mxs_A 37 EEDILPLADALAAGGIRTLEVTLR------SQ--------H--GLKAIQVLREQRPELCVGA------------------ 82 (225) T ss_dssp GGGHHHHHHHHHHTTCCEEEEESS------ST--------H--HHHHHHHHHHHCTTSEEEE------------------ T ss_pred HHHHHHHHHHHHHCCCCEEEEECC------CC--------H--HHHHHHHHHHHCCCCEEEE------------------ T ss_conf 999999999999879988999589------94--------0--9999999997499707865------------------ Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC Q ss_conf 544628999999999999996289735-2466767799999999987788577300336664354301016753102446 Q gi|255764463|r 147 GEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL 225 (337) Q Consensus 147 g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~ 225 (337) |-|.|-+.++ ...+|||+++ .|. .-..-+ +.--++|+. . + T Consensus 83 GTV~~~~~~~-------~a~~aGa~FivsP~-~~~~v~----~~a~~~~i~---~------------------------i 123 (225) T 1mxs_A 83 GTVLDRSMFA-------AVEAAGAQFVVTPG-ITEDIL----EAGVDSEIP---L------------------------L 123 (225) T ss_dssp ECCCSHHHHH-------HHHHHTCSSEECSS-CCHHHH----HHHHHCSSC---E------------------------E T ss_pred EECCCHHHHH-------HHHHCCCCEEECCC-CCHHHH----HHHHHCCCC---C------------------------C T ss_conf 3036799999-------99977998998898-959999----999865997---2------------------------5 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCEE Q ss_conf 7777443157211478898888766408987995531145--89999999624-99899 Q gi|255764463|r 226 KGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPTF 281 (337) Q Consensus 226 ~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~~ 281 (337) .| .... -|+..=.+-|+|+|=+=||-.. +..++.++.-+ +++.. T Consensus 124 PG--------v~Tp----sEi~~A~~~G~~~vK~FPA~~~Gg~~~lkal~~p~p~i~~~ 170 (225) T 1mxs_A 124 PG--------ISTP----SEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFC 170 (225) T ss_dssp CE--------ECSH----HHHHHHHTTTCCEEEETTHHHHTHHHHHHHHHTTTTTCEEE T ss_pred CC--------CCCH----HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCEE T ss_conf 78--------6998----99999998699818776401027999998640656677166 No 75 >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Probab=71.78 E-value=5.4 Score=19.71 Aligned_cols=130 Identities=17% Similarity=0.211 Sum_probs=72.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC Q ss_conf 99999999999988893676330256334554454215765379999999997301447986133271001143100136 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD 146 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~ 146 (337) .+..+..++-+.+.||+.|=+=- .++ + -.++|+.++++|||+.|=+ T Consensus 27 ~~~a~~i~~al~~~Gi~~iEItl------~tp--------~--a~~~i~~l~~~~p~~~iGa------------------ 72 (214) T 1wbh_A 27 LEHAVPMAKALVAGGVRVLNVTL------RTE--------C--AVDAIRAIAKEVPEAIVGA------------------ 72 (214) T ss_dssp GGGHHHHHHHHHHTTCCEEEEES------CST--------T--HHHHHHHHHHHCTTSEEEE------------------ T ss_pred HHHHHHHHHHHHHCCCCEEEEEC------CCH--------H--HHHHHHHHHHHCCCCEEEE------------------ T ss_conf 99999999999987998899937------986--------7--9999999998789967952------------------ Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC Q ss_conf 544628999999999999996289735-2466767799999999987788577300336664354301016753102446 Q gi|255764463|r 147 GEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL 225 (337) Q Consensus 147 g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~ 225 (337) |-|.|-++++ ...+|||+++ +|. . | -.+..|+.+.. -.|- | T Consensus 73 GTV~~~e~~~-------~a~~aGa~FivsP~-~-~-----------------~~v~~~a~~~~-i~~i---------P-- 114 (214) T 1wbh_A 73 GTVLNPQQLA-------EVTEAGAQFAISPG-L-T-----------------EPLLKAATEGT-IPLI---------P-- 114 (214) T ss_dssp ESCCSHHHHH-------HHHHHTCSCEEESS-C-C-----------------HHHHHHHHHSS-SCEE---------E-- T ss_pred CCCCCHHHHH-------HHHHCCCCEEECCC-C-C-----------------HHHHHHHHHCC-CCCC---------C-- T ss_conf 4545368999-------99981998998589-9-9-----------------99999998549-9753---------7-- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCEE Q ss_conf 7777443157211478898888766408987995531145--89999999624-99899 Q gi|255764463|r 226 KGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPTF 281 (337) Q Consensus 226 ~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~~ 281 (337) | ..... |+..=.+-|+|++=+=||-.+ +.-|+.++.-+ .+++. T Consensus 115 -G--------v~Tps----Ei~~A~~~G~~~vK~FPA~~~Gg~~~ik~l~~p~p~i~~~ 160 (214) T 1wbh_A 115 -G--------ISTVS----ELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFC 160 (214) T ss_dssp -E--------ESSHH----HHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEE T ss_pred -C--------CCCHH----HHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCCCEEE T ss_conf -8--------49889----9999998599959976024208098999874213377076 No 76 >2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Probab=71.70 E-value=5.2 Score=19.81 Aligned_cols=120 Identities=10% Similarity=0.125 Sum_probs=69.5 Q ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEC-HHHHHHHHHHCCHHHH----HHCCCCC--CCCCCCCCCCCCHH Q ss_conf 628973524667677999999999877885773003-3666435430101675----3102446--77774431572114 Q gi|255764463|r 167 DAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMP-YVAKFNSSFYGPYRDA----ISTRDLL--KGDKKTYYLDPANV 239 (337) Q Consensus 167 ~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Ims-YsaKfaS~fYgPFRdA----~~S~p~~--~gdr~sYQmd~~n~ 239 (337) +.+.+++-|+ .++-++|..-|..++++++ |...-.-.+..=|+++ +... .+ ..+..-...++..- T Consensus 87 ~~~~~~~~~~-------~A~~~AL~~lg~krIav~TPY~~~v~~~~~~~~~~~G~eVv~~~-~l~~~~~~~i~~~~~~~i 158 (223) T 2dgd_A 87 RVIKDVVIPE-------ESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKGFEIVGYD-GLGKIRGIDISNTPIFTI 158 (223) T ss_dssp HHSTTCBCHH-------HHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHTTTCEEEEEE-ECCCCSHHHHHTCCHHHH T ss_pred HCCCCCCCHH-------HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEC-CCCCCCCCCCCCCCHHHH T ss_conf 5347656879-------99999999729980799678865778999999996791375202-048776542023999999 Q ss_pred HHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH Q ss_conf 78898888766408987995-531145899999996249989999346189999999 Q gi|255764463|r 240 QEAIREASIDIQESADMLLV-KPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAA 295 (337) Q Consensus 240 ~eA~~e~~~D~~EGAD~lMV-KPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a 295 (337) .++.++...|. .+||.+.+ =-+|+-+++|.++-+.+++||..=+..--+.+++.+ T Consensus 159 ~~~~~~~~~~~-~~adav~iscT~l~t~~~i~~lE~~lg~PVisSNqa~~W~~Lr~~ 214 (223) T 2dgd_A 159 YRLVKRHLNEV-LKADAVYIACTALSTYEAVQYLHEDLDMPVVSENAAAMWEALNKL 214 (223) T ss_dssp HHHHHTTHHHH-TTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEHHHHHHHHHHHHH T ss_pred HHHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHC T ss_conf 99999974114-578789994158638889999999989899978999999999985 No 77 >5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A* 1rba_A Probab=71.17 E-value=5.6 Score=19.61 Aligned_cols=146 Identities=17% Similarity=0.114 Sum_probs=83.2 Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC Q ss_conf 99999999999999628973524667677999999999877885773003366643543010167531024467777443 Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY 232 (337) Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sY 232 (337) -|-+.+++++-..+ .|.|+|-= .++..|-+-+.+.-.+.-+ -+|++.+-.-.|-++-| T Consensus 195 Lsp~~~a~~~ye~~-~GgDfIKD----------------DE~ladq~f~p~~eRv~~v-----~eai~~A~~eTG~~klY 252 (490) T 5rub_A 195 LRPKPFAEACHAFW-LGGDFIKN----------------DEPQGNQPFAPLRDTIALV-----ADAMRRAQDETGEAKLF 252 (490) T ss_dssp CCHHHHHHHHHHHT-TTCSEEEC----------------CTTCSCBTTBCHHHHHHHH-----HHHHHHHHHHHSSCCEE T ss_pred CCHHHHHHHHHHHH-CCCCCCCC----------------CCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCEE T ss_conf 99899999999985-15885427----------------7667798887789999999-----99999999986885558 Q ss_pred CCCCCH--HHHHHHHHHHHHHCCC-----CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH Q ss_conf 157211--4788988887664089-----879955311458999999962499899993461899999999888978899 Q gi|255764463|r 233 YLDPAN--VQEAIREASIDIQESA-----DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKND 305 (337) Q Consensus 233 Qmd~~n--~~eA~~e~~~D~~EGA-----D~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~ 305 (337) -.+... ..|-++....-.+.|+ -.+||-+-..-++.++.+++.+..+...+|-+|-=++.-.....| ++.. T Consensus 253 a~NITa~~~~em~~Ra~~~~e~gg~~a~~~~lmi~~~~~G~~a~~~lr~~~~~~~ih~Hra~~ga~~~~~~~~G-~s~~- 330 (490) T 5rub_A 253 SANITADDPFEIIARGEYVLETFGENASHVALLVDGYVAGAAAITTARRRFPDNFLHYHRAGHGAVTSPQSKRG-YTAF- 330 (490) T ss_dssp EEECCCSSHHHHHHHHHHHHHHHGGGGGGEEEEEETTTSCHHHHHHHHHHCTTSCEEEECTTTHHHHSTTCCSE-ECHH- T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC-CCHH- T ss_conf 87447899999999999999835853353379981520169999999974565430023222243336786786-8399- Q ss_pred HHHHHHHHHHHHCCCEEEEC Q ss_conf 99999999977269999820 Q gi|255764463|r 306 AMMESLLAFKRAGCDGIFTY 325 (337) Q Consensus 306 ~~~E~l~~~kRAGAd~IitY 325 (337) + + ..-.+-||||.|++. T Consensus 331 v-l--~Kl~RLaGaD~ih~g 347 (490) T 5rub_A 331 V-H--CKMARLQGASGIHTG 347 (490) T ss_dssp H-H--HHHHHHHTCSEEECC T ss_pred H-H--HHHHHHCCCCEEEEC T ss_conf 9-9--999998187868706 No 78 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=71.16 E-value=5.8 Score=19.51 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=36.6 Q ss_pred CCCCCC-HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 315721-147889888876640898799553114589999999624-998999934618999999998889 Q gi|255764463|r 232 YYLDPA-NVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 232 YQmd~~-n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~ 300 (337) |+...+ |..+|+.... .+--|.+|+ |++.=+++++.+|+.. ..|+...--.++-.....|-+.|. T Consensus 43 ~~v~~a~~g~~al~~l~---~~~~DlviL-p~~~G~ell~~ir~~~~~~piiilT~~~~~~~~~~al~~Ga 109 (137) T 2pln_A 43 FMADVTESLEDGEYLMD---IRNYDLVMV-SDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGA 109 (137) T ss_dssp CEEEEESCHHHHHHHHH---HSCCSEEEE-CSTTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTC T ss_pred CEEEEECCHHHHHHHHH---CCCCCEEEE-ECCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCC T ss_conf 99999899999999997---289999998-27876379999996288997599964899999999998699 No 79 >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Probab=70.15 E-value=6.1 Score=19.36 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=81.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEEE------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH Q ss_conf 9999999999988893676330------------256334554454215765379999999997301-447986133271 Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFP------------NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP 134 (337) Q Consensus 68 d~L~~eie~~~~lGI~av~LFp------------~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~ 134 (337) +.-.+.++.+.+.|.-.|-|-. .. +.-.|+.|-.--|.--|....|++||+..| |..|..-+.-++ T Consensus 141 ~~f~~aA~ra~~aGfDgVeih~ahGyLl~qFlsp~~-N~R~D~yGGs~enR~Rf~~eii~~ir~~~g~~~~v~~Ris~~~ 219 (671) T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRT-NQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLD 219 (671) T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTT-CCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEEC T ss_pred HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 999999999998299989945342149998421226-8777766768777768899999999876199853888426411 Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC Q ss_conf 00114310013654462899999999999999628973524667677999999999877885773003366643543010 Q gi|255764463|r 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337) Q Consensus 135 YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337) +-..| ...++++ +.+-.+.++|.|++-.|..+.. ...+.+.. ..+.++ T Consensus 220 ~~~~~---------~~~~~~~----~~~~~l~~~g~d~~~~~~g~~~--------------~~~~~~~~-----~~~~~~ 267 (671) T 1ps9_A 220 LVEDG---------GTFAETV----ELAQAIEAAGATIINTGIGWHE--------------ARIPTIAT-----PVPRGA 267 (671) T ss_dssp CSTTC---------CCHHHHH----HHHHHHHHHTCSEEEEEECBTT--------------CSSCSSST-----TSCTTT T ss_pred CCCCC---------CCHHHHH----HHHHHHHHHCCCEEECCCCCCC--------------CCCCCCCC-----CCCCHH T ss_conf 25789---------9889999----9999999848720212235544--------------56765567-----664115 Q ss_pred HHHHHHC------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEE-CCCHHHHHHHHHHHHH Q ss_conf 1675310------24467777443157211478898888766408-987995-5311458999999962 Q gi|255764463|r 215 YRDAIST------RDLLKGDKKTYYLDPANVQEAIREASIDIQES-ADMLLV-KPGLPYLDVCFRIKEK 275 (337) Q Consensus 215 FRdA~~S------~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG-AD~lMV-KPa~~yLDii~~~k~~ 275 (337) |-..+.. -|..... .-.+| ..++.-+++| ||++.+ .|-+..=|.++++++. T Consensus 268 ~~~~~~~~~~~~~~pvi~~g---~~~~~-------~~ae~~l~~g~~D~v~~gR~~iadPd~~~k~~~g 326 (671) T 1ps9_A 268 FSWVTRKLKGHVSLPLVTTN---RINDP-------QVADDILSRGDADMVSMARPFLADAELLSKAQSG 326 (671) T ss_dssp THHHHHHHTTSCSSCEEECS---SCCSH-------HHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTT T ss_pred HHHHHHHHHCCCCCCEEEEC---CCCCH-------HHHHHHHHCCCCCEEECCHHHHHCCHHHHHHHCC T ss_conf 69999998514433479717---87778-------9999999779988660045977194689999729 No 80 >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Probab=70.06 E-value=6.1 Score=19.35 Aligned_cols=65 Identities=29% Similarity=0.355 Sum_probs=45.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCHH----------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH Q ss_conf 21147889888876640898799553114----------58999999962499899993461899999999888978899 Q gi|255764463|r 236 PANVQEAIREASIDIQESADMLLVKPGLP----------YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKND 305 (337) Q Consensus 236 ~~n~~eA~~e~~~D~~EGAD~lMVKPa~~----------yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~ 305 (337) ..|..|+. .-..+|+|++.+=|-.+ -++.++++++.+.+|++|- |-++.+. T Consensus 115 ~h~~~e~~----~a~~~g~DYi~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~Pv~Ai---------------GGI~~~n 175 (215) T 1xi3_A 115 VYSLEEAL----EAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAI---------------GGINKDN 175 (215) T ss_dssp ESSHHHHH----HHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEE---------------SSCCTTT T ss_pred CCHHHHHH----HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE---------------CCCCHHH T ss_conf 66599999----9987699889962443068888888765889999987357982787---------------7999999 Q ss_pred HHHHHHHHHHHHCCCEEEE Q ss_conf 9999999997726999982 Q gi|255764463|r 306 AMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 306 ~~~E~l~~~kRAGAd~Iit 324 (337) +..+.++||+.|.. T Consensus 176 -----i~~~~~~Ga~giAv 189 (215) T 1xi3_A 176 -----AREVLKTGVDGIAV 189 (215) T ss_dssp -----HHHHHTTTCSEEEE T ss_pred -----HHHHHHCCCCEEEE T ss_conf -----99999809989997 No 81 >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Probab=69.84 E-value=6.2 Score=19.32 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=65.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC Q ss_conf 28899999999999988893676330256334554454215765-37999999999730144798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+.+.|+..+.+++...+.. +-+..+- -++..+++..+. .+-||+-| |+ T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~-----~Ls~eEr~~l~~~~~~~~~~---~~~vi~gv--------~~-- 78 (292) T 2vc6_A 17 RIDEVALHDLVEWQIEEGSFGLVPCGTTGESP-----TLSKSEHEQVVEITIKTANG---RVPVIAGA--------GS-- 78 (292) T ss_dssp EECHHHHHHHHHHHHHTTCSEEETTSGGGTGG-----GSCHHHHHHHHHHHHHHHTT---SSCBEEEC--------CC-- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECHHHH-----HCCHHHHHHHHHHHHHHCCC---CCCEEEEC--------CC-- T ss_conf 82999999999999977999999770411254-----58999999999999987179---86189736--------84-- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---C-----CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH Q ss_conf 01365446289999999999999962897352---4-----667677999999999877885773003366643543 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIA---P-----SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---P-----SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337) .+.+...+.+...+++|||.|. | |+ |+-+...++..+. .+.+||-|..-..+.+ T Consensus 79 ----------~s~~~~i~~a~~a~~~Gad~v~v~pP~~~~~s~--~~l~~~~~~v~~~---~~~pi~~Yn~P~~~~~ 140 (292) T 2vc6_A 79 ----------NSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQ--EGIYQHFKAIDAA---STIPIIVYNIPGRSAI 140 (292) T ss_dssp ----------SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH--HHHHHHHHHHHHH---CSSCEEEEECHHHHSC T ss_pred ----------HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH--HHHHHHHHHHHHH---CCCCEEEEECCCCCCC T ss_conf ----------379999999999997699999987998899899--9999999999830---5787899955885588 No 82 >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Probab=67.93 E-value=6.7 Score=19.06 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=59.5 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337) ...-.+.+.+.++.+.+.|+..+.+++.+.+. .+++.+ =-.+.++...+..+ .+.|+.=+. T Consensus 28 ~~iD~~~~~~~i~~l~~~Gv~gl~i~GstGE~-------~~Ls~e-Er~~l~~~~~~~~~~~~~vi~g~~---------- 89 (314) T 3d0c_A 28 REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEF-------YALTIE-EAKQVATRVTELVNGRATVVAGIG---------- 89 (314) T ss_dssp CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTG-------GGSCHH-HHHHHHHHHHHHHTTSSEEEEEEC---------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCCH-------HHCCHH-HHHHHHHHHHHHCCCCEEEEEECC---------- T ss_conf 98399999999999997699989968500005-------348999-999999988887099514997468---------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECH Q ss_conf 001365446289999999999999962897352---4667---6779999999998778857730033 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPY 203 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsY 203 (337) ...++++ +.|....++|||.|. |+-. -++-+...++..|.. +.+|+=| T Consensus 90 -------~st~~~i----~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~f~~ia~~~---~~Pi~iY 143 (314) T 3d0c_A 90 -------YSVDTAI----ELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEAL---DAPSIIY 143 (314) T ss_dssp -------SSHHHHH----HHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS---SSCEEEE T ss_pred -------CCHHHHH----HHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEE T ss_conf -------8889999----9999999729884420588556776799999999997504---7985777 No 83 >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* Probab=67.19 E-value=7 Score=18.96 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=58.9 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337) ....+.+.+.++.+.+.|+..|.+++...+.. +++.+- -.+.++...+....+ +. |+ T Consensus 16 ~iD~~~~~~~i~~l~~~Gv~gi~i~GttGE~~-------~Ls~~E-r~~~~~~~~~~~~~~--i~-------------~v 72 (293) T 1w3i_A 16 RIDKEKLKIHAENLIRKGIDKLFVNGTTGLGP-------SLSPEE-KLENLKAVYDVTNKI--IF-------------QV 72 (293) T ss_dssp SBCHHHHHHHHHHHHHTTCCEEEESSTTTTGG-------GSCHHH-HHHHHHHHHTTCSCE--EE-------------EC T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH-------HCCHHH-HHHHHHHHHHHCCCE--EE-------------EC T ss_conf 96999999999999986999899783456466-------588999-999999987535413--54-------------12 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC----CCCHHHHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 136544628999999999999996289735---24667----67799999999987788577300336664 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADII---APSEM----MDGRVQEIRKKLDSHGHINVGIMPYVAKF 207 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM----MDGrV~aIR~~Ld~~g~~~~~ImsYsaKf 207 (337) +...-++| .+.+-...++|+|.+ .|.-. -++-+..-++.-+. .+.+|+-|-.-. T Consensus 73 ---~~~s~~~~----i~~a~~a~~~Gad~~~~~~P~~~~~~~~~~l~~~~~~ia~a---~~~pi~iYn~P~ 133 (293) T 1w3i_A 73 ---GGLNLDDA----IRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEV---SPHPVYLYNYPT 133 (293) T ss_dssp ---CCSCHHHH----HHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHH---CSSCEEEEECHH T ss_pred ---CCCCHHHH----HHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH---HCCEEEEECCCC T ss_conf ---55667877----88877777449655504687000358899999999999972---255378871675 No 84 >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Probab=67.13 E-value=7 Score=18.95 Aligned_cols=116 Identities=11% Similarity=0.119 Sum_probs=60.2 Q ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCC Q ss_conf 328899999999999988-893676330256334554454215765379999999997301-447986133271001143 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADL-GIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGH 140 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~l-GI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGH 140 (337) .....+.+.+.++.+++. |+..|.+++...+- .+++.+ =-.+.++...+..+ .+-|++-| |+ T Consensus 19 g~iD~~~~~~~i~~~i~~~Gv~gi~~~GstGE~-------~~Ls~~-Er~~l~~~~~~~~~~~~~vi~gv--------~~ 82 (293) T 1f6k_A 19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGEN-------FMLSTE-EKKEIFRIAKDEAKDQIALIAQV--------GS 82 (293) T ss_dssp SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTG-------GGSCHH-HHHHHHHHHHHHHTTSSEEEEEC--------CC T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCH-------HHCCHH-HHHHHHHHHHHHCCCCCEEEEEC--------CC T ss_conf 793999999999999982799989979216305-------448899-99989988776327884299835--------76 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHH Q ss_conf 1001365446289999999999999962897352---4667---6779999999998778857730033666435 Q gi|255764463|r 141 DGILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209 (337) Q Consensus 141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS 209 (337) + +.+...+.|-..+++|||.|. |.-. .++-+..-++.-+ ..+.+||=|-.-..+ T Consensus 83 ~------------~~~~~i~la~~a~~~Gad~v~~~pP~~~~~~~~~~~~~~~~ia~---~~~~pi~iYn~P~~~ 142 (293) T 1f6k_A 83 V------------NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIA---ETGSNMIVYSIPFLT 142 (293) T ss_dssp S------------CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH---HHCCCEEEEECHHHH T ss_pred C------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCC T ss_conf 7------------79999999999997599977725851123241999999999850---588627886054101 No 85 >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Probab=66.50 E-value=7.2 Score=18.87 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=87.6 Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC-CC--CCC-----------C---CCCHHHHHHHHHHHHHHHHHCC Q ss_conf 53799999999973014479861332710011431-00--136-----------5---4462899999999999999628 Q gi|255764463|r 107 DNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD-GI--LCD-----------G---EIVNDETIELISHAAVIQADAG 169 (337) Q Consensus 107 dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc-Gi--~~~-----------g---~IdND~Tl~~L~k~Al~~A~AG 169 (337) -.++..|++.+|+++++-.-+.-.|-.|+|.-.+. |- ..+ . .-.-+...+.+.+.+..+.++| T Consensus 121 ~~~v~eai~~~~~~l~~~vpligf~ggP~Tla~~li~g~~~~~~~~~~~~~~~~p~~~~~ll~~~~~~~~~~~~~qi~~G 200 (354) T 3cyv_A 121 LGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAG 200 (354) T ss_dssp THHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 10177899998986178764698658759999999648752368999998632999999999999999999999999639 Q ss_pred CCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-HHHHHCCCCCCCCCCCC-CCCCCHHHHHHHHHH Q ss_conf 9735246676779999999998778857730033666435430101-67531024467777443-157211478898888 Q gi|255764463|r 170 ADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-RDAISTRDLLKGDKKTY-YLDPANVQEAIREAS 247 (337) Q Consensus 170 aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-RdA~~S~p~~~gdr~sY-Qmd~~n~~eA~~e~~ 247 (337) ||+|.-.|..=|. + |-+..-.|..|+ +..+..-......+... =..+.+...-+ . T Consensus 201 ad~i~i~D~~a~~------------------l--s~~~~~ef~~p~~~~i~~~l~~~~~~~~~~~i~~~~~~~~~l---~ 257 (354) T 3cyv_A 201 AQAVMIFDTWGGV------------------L--TGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWL---E 257 (354) T ss_dssp CSEEEEECTTGGG------------------S--CHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEECTTTTTTH---H T ss_pred CCEEEEEHHHHHC------------------C--CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH---H T ss_conf 9789996024322------------------8--989998999987999999998625788713873168709988---7 Q ss_pred HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC--CCEEEE Q ss_conf 76640898799553114589999999624998-999934618999999998889788999999999997726--999982 Q gi|255764463|r 248 IDIQESADMLLVKPGLPYLDVCFRIKEKFGLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAG--CDGIFT 324 (337) Q Consensus 248 ~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAG--Ad~Iit 324 (337) .-.+-|+|.+=+-+....- .+++.++-. +..=+|+-. ++ .| +.+++.-|+..+++..| -.+|+. T Consensus 258 ~~~~~g~d~ls~d~~~d~~----~~~~~~g~~~~l~GNldP~--~L-----~g--t~e~i~~~~~~~l~~~~~~~g~I~~ 324 (354) T 3cyv_A 258 AMAETGCDALGLDWTTDIA----DARRRVGNKVALQGNMDPS--ML-----YA--PPARIEEEVATILAGFGHGEGHVFN 324 (354) T ss_dssp HHHTTSCSEEECCTTSCHH----HHHHHHTTTSEEECCBCGG--GG-----GS--CHHHHHHHHHHHHTTTTTSSCEEBC T ss_pred HHHHHCCCEECCCCCCCHH----HHHHHCCCCCEEEECCCHH--HH-----CC--CHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 8886187600566676999----9999748995388178868--97-----69--9999999999999984799995997 No 86 >3ez4_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; cytoplasm, magnesium, metal-binding, pantothenate biosynthesis; 2.10A {Burkholderia pseudomallei} Probab=66.00 E-value=7.3 Score=18.81 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=55.6 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE--------ECCHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 1478898888766408987995531145899999996249989999--------34618999999998889788999999 Q gi|255764463|r 238 NVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAY--------QVSGEYAMIKAASLQGWINKNDAMME 309 (337) Q Consensus 238 n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aY--------qVSGEYami~~a~~~g~~d~~~~~~E 309 (337) +..+|++.+.+=++.|||.+-+.-+..++|+|+.+.+ ..+||.+- +.-|-|.. +-.--++...++| T Consensus 98 ~~~~a~~~a~~l~~~GAdaVKlEgg~~~~~~I~~L~~-~GIPV~gHiGLtPQ~~~~~GG~k~-----qGkt~~ea~~ll~ 171 (269) T 3ez4_A 98 TPADAFASAVKLMRAGAQMVKLEGGEWLAETVRFLVE-RAVPVCAHVGLTPQSVHAFGGFKV-----QGKTEAGAAQLLR 171 (269) T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECSGGGHHHHHHHHH-TTCCEEEEEC-------------------------CHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCCCC-----CCCCHHHHHHHHH T ss_conf 5599999999999549998983563669999999998-899388740467255543388632-----2789999999999 Q ss_pred HHHHHHHHCCCEEEECH-HHHHHHHHHC Q ss_conf 99999772699998201-8999999850 Q gi|255764463|r 310 SLLAFKRAGCDGIFTYF-AMEAARILTH 336 (337) Q Consensus 310 ~l~~~kRAGAd~IitY~-A~~~a~~L~~ 336 (337) -...+-.|||-.|+-=. ..++|+++++ T Consensus 172 dA~~le~AGaf~ivlE~Vp~~la~~It~ 199 (269) T 3ez4_A 172 DARAVEEAGAQLIVLEAVPTLVAAEVTR 199 (269) T ss_dssp HHHHHHHHTCSEEEEESCCHHHHHHHHH T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHH T ss_conf 9999986022277642675778999984 No 87 >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Probab=65.91 E-value=7.4 Score=18.80 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=60.0 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|+..+.+++...+- .+++.+ =-.+.++...+... .+-||.-+.-. T Consensus 17 ~~iD~~~l~~~i~~~~~~Gv~Gi~~~GttGE~-------~~Ls~~-Er~~~~~~~~~~~~~~~~vi~gv~~~-------- 80 (292) T 2ojp_A 17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGES-------ATLNHD-EHADVVMMTLDLADGRIPVIAGTGAN-------- 80 (292) T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTG-------GGSCHH-HHHHHHHHHHHHHTTSSCEEEECCCS-------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCHH-------HHCCHH-HHHHHHHHHHHHCCCCEEEEEECCCC-------- T ss_conf 78799999999999997699989968441016-------558999-99999999776518952599855889-------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHH Q ss_conf 001365446289999999999999962897352---4667---677999999999877885773003366643 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFN 208 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfa 208 (337) +.+...+.|....++|+|-|. |.-. -|+-+...+..- ...+.+|+-|-.-.. T Consensus 81 ------------s~~~~i~~a~~a~~~Gad~v~~~~P~~~~~~~~~l~~~~~~i~---~~~~~pi~iYn~P~~ 138 (292) T 2ojp_A 81 ------------ATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIA---EHTDLPQILYNVPSR 138 (292) T ss_dssp ------------SHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHH---TTCSSCEEEECCHHH T ss_pred ------------CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHH---HHCCCCEEEEECCCC T ss_conf ------------8999999988898739964597478788989999999999986---107997899966864 No 88 >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Probab=65.89 E-value=7.4 Score=18.79 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=60.2 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH------------HHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 89999999999998889367633025633455445421576537------------999999999730144798613327 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL------------INEGICAIKKNIPNIGIITDVALD 133 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl------------v~rAIr~IK~~fpdl~vi~DVcLc 133 (337) ....+.+.+..+.+|||++|-|-|+.+.... . ..|++-++ ..+-|++++++ .|.||.||.+- T Consensus 29 d~~g~~~~LdYlk~LGv~~I~L~Pv~~~~~~-~---~GY~~~d~~~vd~~~Gt~~dfk~lV~~~H~~--GI~VilDvV~N 102 (543) T 2zic_A 29 DLKGITSKLDYLQKLGVMAIWLSPVYDSPMD-D---NGYDIANYEAIADIFGNMADMDNLLTQAKMR--GIKIIMDLVVN 102 (543) T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCEECCCT-T---TTSSCSEEEEECGGGCCHHHHHHHHHHHHTT--TCEEEEEECCS T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCC-C---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCC T ss_conf 9999998448998769988997977158988-9---9958557787572469999999999999988--89899997857 Q ss_pred HHHC-----------------------------CCC-CC---------------CCC----CCCCCHHHHHHHHHHHHHH Q ss_conf 1001-----------------------------143-10---------------013----6544628999999999999 Q gi|255764463|r 134 PFTI-----------------------------HGH-DG---------------ILC----DGEIVNDETIELISHAAVI 164 (337) Q Consensus 134 ~YT~-----------------------------hGH-cG---------------i~~----~g~IdND~Tl~~L~k~Al~ 164 (337) ...+ .+. || ... +=...|.+..+.+.....- T Consensus 103 Ht~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~~~~~~~~~~~~ 182 (543) T 2zic_A 103 HTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIYDMMNF 182 (543) T ss_dssp BCCTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTCHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 77286542222023765444453002689876556679986555555683442477776774367877999999999879 Q ss_pred HHHCCCCEEEC Q ss_conf 99628973524 Q gi|255764463|r 165 QADAGADIIAP 175 (337) Q Consensus 165 ~A~AGaDivAP 175 (337) ..+-|+|..-- T Consensus 183 ~~~~gvDGfR~ 193 (543) T 2zic_A 183 WIDKGIGGFRM 193 (543) T ss_dssp HHTTTCCEEEE T ss_pred HHHCCCCCEEE T ss_conf 98739871331 No 89 >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 Probab=65.47 E-value=5.6 Score=19.61 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=37.6 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337) ..+.++++.+++..++=+- +. +||-. +.|+ +|++.+++.- +-+-+-.|. T Consensus 71 ~~~~m~~~a~~l~~~~~nv--~I-KIP~t-----------~~G~--~a~~~L~~~G--i~vn~T~vf------------- 119 (223) T 1wx0_A 71 EAEAMVAEGRRLAAIHPNI--VV-KLPTT-----------EEGL--KACKRLSAEG--IKVNMTLIF------------- 119 (223) T ss_dssp SHHHHHHHHHHHHHHCTTE--EE-EEESS-----------HHHH--HHHHHHHHTT--CCEEEEEEC------------- T ss_pred CHHHHHHHHHHHHHHCCCE--EE-EECCC-----------HHHH--HHHHHHHCCC--CCEEEEEEC------------- T ss_conf 7899999999998637755--99-95477-----------8789--9999861159--652788975------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 654462899999999999999628973524 Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAP 175 (337) Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337) -..||+.-++|||++|+| T Consensus 120 ------------s~~Qa~~A~~aga~yisp 137 (223) T 1wx0_A 120 ------------SANQALLAARAGASYVSP 137 (223) T ss_dssp ------------SHHHHHHHHHTTCSEEEE T ss_pred ------------CHHHHHHHHHCCCCEEEE T ss_conf ------------899999999859929997 No 90 >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} Probab=65.44 E-value=7.5 Score=18.74 Aligned_cols=55 Identities=29% Similarity=0.418 Sum_probs=40.0 Q ss_pred HHHCCCCEEEECCCHH----------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC Q ss_conf 6640898799553114----------589999999624998999934618999999998889788999999999997726 Q gi|255764463|r 249 DIQESADMLLVKPGLP----------YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAG 318 (337) Q Consensus 249 D~~EGAD~lMVKPa~~----------yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAG 318 (337) -.++|||++.+-|-.+ -++.++.+++.+.+|+.|- |-++.+ .+..+..+| T Consensus 126 a~~~gaDYi~~gpif~T~tK~~~~~~g~~~l~~~~~~~~~PvvAi---------------GGI~~~-----ni~~~~~~G 185 (221) T 1yad_A 126 AEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAI---------------GGMTPD-----RLRDVKQAG 185 (221) T ss_dssp HHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEE---------------SSCCGG-----GHHHHHHTT T ss_pred HHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---------------CCCCHH-----HHHHHHHCC T ss_conf 986599978306776666665310336788876400356767986---------------798999-----999999809 Q ss_pred CCEEE Q ss_conf 99998 Q gi|255764463|r 319 CDGIF 323 (337) Q Consensus 319 Ad~Ii 323 (337) |+.|- T Consensus 186 a~gva 190 (221) T 1yad_A 186 ADGIA 190 (221) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 98899 No 91 >3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str} Probab=65.37 E-value=7.5 Score=18.73 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=45.0 Q ss_pred HCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC Q ss_conf 408987995531145899999996249989999346189999999988897889999999999977269999820 Q gi|255764463|r 251 QESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337) Q Consensus 251 ~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337) .-..|.+=|=||.. -.+|+++++.++.|+.| -|++..++-+.|+| .|||..|=|- T Consensus 125 ~~~PD~VEiLPG~~-p~~I~~i~~~~~~PiIA---------------GGLI~~kedV~~aL----~aGA~aVSTS 179 (192) T 3kts_A 125 KVQPDCIELLPGII-PEQVQKMTQKLHIPVIA---------------GGLIETSEQVNQVI----ASGAIAVTTS 179 (192) T ss_dssp HHCCSEEEEECTTC-HHHHHHHHHHHCCCEEE---------------ESSCCSHHHHHHHH----TTTEEEEEEC T ss_pred HCCCCEEEECCHHH-HHHHHHHHHHCCCCEEE---------------ECCCCCHHHHHHHH----HCCCEEEECC T ss_conf 47989999886678-99999999746999997---------------66728899999999----8599799879 No 92 >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Probab=65.06 E-value=7.6 Score=18.69 Aligned_cols=111 Identities=19% Similarity=0.166 Sum_probs=64.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC------CCCCCCC---------CHHHHHHHHHHHHHC-CCEE Q ss_conf 32889999999999998889367633025633455445------4215765---------379999999997301-4479 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG------SHIIDPD---------NLINEGICAIKKNIP-NIGI 126 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G------seA~n~d---------glv~rAIr~IK~~fp-dl~v 126 (337) +-|+-..+.+++..+.+|||.+|-|=|..+....+..+ -+.|++. |-...--+.|++.-- .|-| T Consensus 12 ~~w~f~~i~~kLdylk~LGv~~Iwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~~Gt~~d~~~Lv~~~H~~Gi~V 91 (422) T 1ua7_A 12 WNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKV 91 (422) T ss_dssp TTBCHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 57779999996899997499989969884177766676666788653055337776857899999999999986458889 Q ss_pred EECCCCCHH----------------HCCCCCCCCC----------------CCCCCHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 861332710----------------0114310013----------------6544628999999999999996289735 Q gi|255764463|r 127 ITDVALDPF----------------TIHGHDGILC----------------DGEIVNDETIELISHAAVIQADAGADII 173 (337) Q Consensus 127 i~DVcLc~Y----------------T~hGHcGi~~----------------~g~IdND~Tl~~L~k~Al~~A~AGaDiv 173 (337) |.|+-+-.- -.|+.|.+-. |=.-.|.+.-+.|.+.+.-..+-|+|-. T Consensus 92 ilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDln~~n~~V~~~l~~~~~~W~~~giDGf 170 (422) T 1ua7_A 92 IVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALNDGADGF 170 (422) T ss_dssp EEEECCSBCCSCTTTSCHHHHTSTTCEEECCBCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHHTTCCEE T ss_pred EEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEE T ss_conf 9973048667877561003556764446888888888876663167578777477999999999999999997506757 No 93 >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Probab=65.00 E-value=7.7 Score=18.68 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=22.9 Q ss_pred HHHHHHHHHCCCCEE----ECC---------CCCCCHHHHHHHHHHHCCCCCCCEEC Q ss_conf 999999996289735----246---------67677999999999877885773003 Q gi|255764463|r 159 SHAAVIQADAGADII----APS---------EMMDGRVQEIRKKLDSHGHINVGIMP 202 (337) Q Consensus 159 ~k~Al~~A~AGaDiv----APS---------dMMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337) .++|..+.++|||.| +|- .---+++.+|.+.-+...-.+++|++ T Consensus 156 ~e~a~~L~~aGAD~VkVGiG~Gs~CtTr~~tGvg~pq~sai~~~~~~~~~~~vpIIA 212 (361) T 3khj_A 156 EEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 212 (361) T ss_dssp HHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEE T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE T ss_conf 899999997199889973406855552003155783688999999986047887795 No 94 >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Probab=63.84 E-value=8 Score=18.54 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=36.3 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECC Q ss_conf 04888786328899999999999988893676330256334554454215765379999999997301-44798613 Q gi|255764463|r 55 SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDV 130 (337) Q Consensus 55 ~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DV 130 (337) +++..-....-+.+.+.++++++.+.|.+.+-+-.+.....+| .+.+++|++.+| ++-++.|. T Consensus 133 ~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~~d-------------~~~v~~ir~~~g~~~~l~vDa 196 (359) T 1mdl_A 133 PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQD-------------LAVVRSIRQAVGDDFGIMVDY 196 (359) T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHH-------------HHHHHHHHHHHCSSSEEEEEC T ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHH-------------HHHHHHHHHHCCCCCEEECCC T ss_conf 4520102358999999999999998478814202467662889-------------999999998618882460164 No 95 >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 Probab=63.82 E-value=5.9 Score=19.43 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=40.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337) ..+.++++.++...+|-+-+. +||-. + .| .+|++.+++.--. +-+-.|.+ T Consensus 74 ~~~em~~~a~~i~~~~~nv~V---KIP~t---~--------~g--l~ai~~L~~~Gi~--~n~Tavfs------------ 123 (230) T 1vpx_A 74 DYEGMVREARELAQISEYVVI---KIPMT---P--------DG--IKAVKTLSAEGIK--TNVTLVFS------------ 123 (230) T ss_dssp SHHHHHHHHHHHHTTCTTEEE---EEESS---H--------HH--HHHHHHHHHTTCC--EEEEEECS------------ T ss_pred HHHHHHHHHHHHHCCCCCEEE---EECCC---H--------HH--HHHHHHHHHCCCC--EEEEEECC------------ T ss_conf 789889999998604876189---80574---7--------78--9999996053995--68875067------------ Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 654462899999999999999628973524 Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAP 175 (337) Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337) ..||+.-|+|||++|+| T Consensus 124 -------------~~Qa~~Aa~aga~yisp 140 (230) T 1vpx_A 124 -------------PAQAILAAKAGATYVSP 140 (230) T ss_dssp -------------HHHHHHHHHHTCSEEEE T ss_pred -------------HHHHHHHHHCCCCEEEE T ss_conf -------------89999998648954877 No 96 >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Probab=63.03 E-value=8.3 Score=18.44 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=56.3 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC Q ss_conf 3288999999999999888936763302563345544542157653-799999999973014479861332710011431 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN-LINEGICAIKKNIPNIGIITDVALDPFTIHGHD 141 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg-lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337) .....+.+.+.++.+.+.|+..|.+++...+-. +-+.++.- ++..+++..+.+ +-|++=| T Consensus 24 ~~iD~~~l~~~i~~l~~~Gv~gi~~~G~~GE~~-----~Ls~~Er~~~~~~~~~~~~~~---~~vi~gv----------- 84 (309) T 3fkr_A 24 GDLDLASQKRAVDFMIDAGSDGLCILANFSEQF-----AITDDERDVLTRTILEHVAGR---VPVIVTT----------- 84 (309) T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGG-----GSCHHHHHHHHHHHHHHHTTS---SCEEEEC----------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-----HCCHHHHHHHHHHHHHHHCCC---CEEEEEC----------- T ss_conf 795999999999999975999899783533346-----579999999999999871799---6089967----------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCC-----C--CCHHHHHHHHHHHCCCCCCCEECHH Q ss_conf 00136544628999999999999996289735--24667-----6--7799999999987788577300336 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII--APSEM-----M--DGRVQEIRKKLDSHGHINVGIMPYV 204 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdM-----M--DGrV~aIR~~Ld~~g~~~~~ImsYs 204 (337) +...-+++ .+.|....++|+|.+ .|... . ++-+..-|+..+. .+.+|+=|- T Consensus 85 -----~~~s~~~~----i~~a~~a~~~G~d~~lv~pP~y~~~~~~~~~~i~~~~~~ia~~---~~lpiiiYn 144 (309) T 3fkr_A 85 -----SHYSTQVC----AARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDA---IAIPIMVQD 144 (309) T ss_dssp -----CCSSHHHH----HHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHH---CSSCEEEEE T ss_pred -----CCCCHHHH----HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEC T ss_conf -----87868999----9999997434998788548744567788999999999999722---488769851 No 97 >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Probab=62.50 E-value=4.3 Score=20.35 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=47.9 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCCCC Q ss_conf 88999999999999888936763302563345544542157653799999999973014-47986133271001143100 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHcGi 143 (337) .+.+..++.++.+.+-||+.+=+= +.++. -..+|+.|+++||+ +.|=+ T Consensus 16 ~~~~~a~~~a~al~~~Gi~~iEit------l~tp~----------a~~~i~~l~~~~~~~~~vGa--------------- 64 (212) T 2v82_A 16 ITPDEALAHVGAVIDAGFDAVEIP------LNSPQ----------WEQSIPAIVDAYGDKALIGA--------------- 64 (212) T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEE------TTSTT----------HHHHHHHHHHHHTTTSEEEE--------------- T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE------CCCCC----------HHHHHHHHHHHCCCCCEEEE--------------- T ss_conf 999999999999998699989995------79934----------99999999996687507853--------------- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC Q ss_conf 136544628999999999999996289735-246 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADII-APS 176 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS 176 (337) |.|.|-+ |+-..+++||+++ .|. T Consensus 65 ---GTV~~~~-------~~~~a~~aGA~FivsP~ 88 (212) T 2v82_A 65 ---GTVLKPE-------QVDALARMGCQLIVTPN 88 (212) T ss_dssp ---ECCCSHH-------HHHHHHHTTCCEEECSS T ss_pred ---ECCCCHH-------HHHHHHHCCCCEEECCC T ss_conf ---0222478-------89999854897898998 No 98 >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Roseovarius nubinhibens ism} PDB: 3fvd_B Probab=61.61 E-value=5.9 Score=19.43 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=54.9 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 11666758988110488878632889999999999998889367633025633455445421576537999999999730 Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337) +|++--=|...+++|+.--.+...+.+...+++++..+.|-+.|-+..+...-.+| .+.|+++++.+ T Consensus 121 ~pv~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~K~kvg~~~~~~d-------------~~~v~~ir~~~ 187 (378) T 2qdd_A 121 LPLWQLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQD-------------IARIEAISAGL 187 (378) T ss_dssp CBHHHHTTCSSCCCEEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSSCHHHH-------------HHHHHHHHHSC T ss_pred CCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHH-------------HHHHHHHHHHC T ss_conf 96202137776641025513457987888888888763476210356799998999-------------99999987646 Q ss_pred C-CCEEEECCC Q ss_conf 1-447986133 Q gi|255764463|r 122 P-NIGIITDVA 131 (337) Q Consensus 122 p-dl~vi~DVc 131 (337) | ++-++.|+- T Consensus 188 g~~~~l~vDaN 198 (378) T 2qdd_A 188 PDGHRVTFDVN 198 (378) T ss_dssp CTTCEEEEECT T ss_pred CCCCEEEECCC T ss_conf 98775871267 No 99 >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus} Probab=61.56 E-value=5 Score=19.93 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=48.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 211478898888766408987995---53114589999999624-99899993461899999999888978 Q gi|255764463|r 236 PANVQEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 236 ~~n~~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) ..|..||+..+.. .--|++.+ =|++.-+++++.+|+.. ..|+...-.+++-..+..|-+.|.-+ T Consensus 35 a~~g~eal~~~~~---~~pDlvllDi~mP~~~G~e~~~~ir~~~~~~~vI~lT~~~~~~~~~~a~~~Ga~~ 102 (133) T 3b2n_A 35 TDNGLDAMKLIEE---YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDA 102 (133) T ss_dssp ESCHHHHHHHHHH---HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSE T ss_pred ECCHHHHHHHHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE T ss_conf 8999999999985---6999999957789998899999999868999689996789999999999879978 No 100 >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A Probab=61.44 E-value=8.8 Score=18.26 Aligned_cols=117 Identities=13% Similarity=0.194 Sum_probs=64.9 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301-44798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+.+.|++.+.+++...+- -+-+..+. .+.++...+..+ ..-|++-|. T Consensus 19 ~iD~~~~~~~i~~l~~~Gv~gl~~~GttGE~-----~~Ls~~Er---~~l~~~~~e~~~~~~pvi~gv~----------- 79 (292) T 3daq_A 19 KVNLEALKAHVNFLLENNAQAIIVNGTTAES-----PTLTTDEK---ELILKTVIDLVDKRVPVIAGTG----------- 79 (292) T ss_dssp EECHHHHHHHHHHHHHTTCCEEEESSGGGTG-----GGSCHHHH---HHHHHHHHHHHTTSSCEEEECC----------- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCHHHHH-----HHCCHHHH---HHHHHHHHHHCCCCCCEEECCC----------- T ss_conf 7899999999999997799999978014446-----66899999---9999988885135686673367----------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EEECCCCC---CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH Q ss_conf 01365446289999999999999962897---35246676---77999999999877885773003366643543 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGAD---IIAPSEMM---DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaD---ivAPSdMM---DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337) +.+.+.-.+.+....++||| ++.|.-.- ++-+...++.-|. .+++|+=|-.-..+.+ T Consensus 80 ---------~~s~~~~i~~a~~a~~~Gad~v~v~pP~~~~~~~~~i~~~~~~va~~---~~~pi~lYn~p~~~g~ 142 (292) T 3daq_A 80 ---------TNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADA---VKLPVVLYNVPSRTNM 142 (292) T ss_dssp ---------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---HCSCEEEEECHHHHSC T ss_pred ---------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCC T ss_conf ---------88899999999999965999899945767889999999999999845---5998899978863578 No 101 >2qjj_A Mandelate racemase/muconate lactonizing enzyme; mannonate dehydratase, enolase superfamily, lyase; 1.80A {Novosphingobium aromaticivorans} PDB: 2qjn_A* 2qjm_A* Probab=61.41 E-value=8.9 Score=18.26 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=57.5 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC---------------- Q ss_conf 1166675898811048887863288999999999999888936763302563345544542157---------------- Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIID---------------- 105 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n---------------- 105 (337) .|++--=|...++.|+..--....+.+.+.+++++..+.|.+++-+=.+.+ ..|+..+..... T Consensus 103 ~Pl~~lLGg~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~G~~~~Kik~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (402) T 2qjj_A 103 MPLYQLLGGRSRDGIMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVP-GIKDAYGVGRGKLYYEPADASLPSVTGW 181 (402) T ss_dssp SBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCT-TCSSCTTCSSCSSCCCCCCBSSCCEEEE T ss_pred CCHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 960421787435664123125779989999999999977973688752775-1012321343320136554556554566 Q ss_pred ----CCCHHHHHHHHHHHHHC-CCEEEECCCCCHHH Q ss_conf ----65379999999997301-44798613327100 Q gi|255764463|r 106 ----PDNLINEGICAIKKNIP-NIGIITDVALDPFT 136 (337) Q Consensus 106 ----~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT 136 (337) .-....+.++++++.++ ++.++.|. -+.|| T Consensus 182 ~~~~~l~~~~~~v~~ir~~~G~~~~l~vDa-N~~~~ 216 (402) T 2qjj_A 182 DTRKALNYVPKLFEELRKTYGFDHHLLHDG-HHRYT 216 (402) T ss_dssp CHHHHHTTHHHHHHHHHHHHCSSSEEEEEC-TTCSC T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHEEECCC-CCCCC T ss_conf 608889999999999998729601351342-23658 No 102 >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Probab=61.28 E-value=8.9 Score=18.24 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=47.6 Q ss_pred CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH---------- Q ss_conf 3311666758988110488878632889999999999998889367633025633455445421576537---------- Q gi|255764463|r 40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL---------- 109 (337) Q Consensus 40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl---------- 109 (337) .||=+||..=.+.. .+-.| .+..+.+.+..+.+|||++|-|-|+.+... +. ..|++-++ T Consensus 24 viYei~~~~F~~~~---~~~~G----d~~g~~~~Ldylk~LGv~~i~L~Pv~~~~~-~~---~GY~~~d~~~vd~~~Gt~ 92 (570) T 1m53_A 24 VFYQIYPRSFKDTN---DDGIG----DIRGIIEKLDYLKSLGIDAIWINPHYDSPN-TD---NGYDISNYRQIMKEYGTM 92 (570) T ss_dssp CEEEECGGGTCCSS---SSSSC----CHHHHHHTHHHHHHHTCCEEEECCCEECCC-TT---TTSSCSEEEEECGGGCCH T ss_pred EEEEEECCHHCCCC---CCCCC----CHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CC---CCCCCCCCCCCCCCCCCH T ss_conf 59999641523899---99865----999999843799875998899798888998-89---996756778737244999 Q ss_pred --HHHHHHHHHHHHCCCEEEECCCC Q ss_conf --99999999973014479861332 Q gi|255764463|r 110 --INEGICAIKKNIPNIGIITDVAL 132 (337) Q Consensus 110 --v~rAIr~IK~~fpdl~vi~DVcL 132 (337) ..+.|++++++ .|.||.||.+ T Consensus 93 ~efk~lV~~aH~~--Gi~VilDvV~ 115 (570) T 1m53_A 93 EDFDSLVAEMKKR--NMRLMIDVVI 115 (570) T ss_dssp HHHHHHHHHHHHT--TCEEEEEECC T ss_pred HHHHHHHHHHHHC--CCEEEEEECC T ss_conf 9999999999988--9989999667 No 103 >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Probab=61.27 E-value=8.9 Score=18.24 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=53.4 Q ss_pred HHHCCCCEEEE-------CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-------- Q ss_conf 87733116667-------589881104888786328899999999999988893676330256334554454-------- Q gi|255764463|r 37 VSDLILPIFLT-------SGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS-------- 101 (337) Q Consensus 37 ~~dLI~PiFV~-------eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs-------- 101 (337) .+-.||=|||. +|......-+..+-..+=.+..+.+.+..+.+|||++|-|-|+.+...-+..|. T Consensus 82 ~~~viYei~v~~F~~~~~~g~~~~~~~~~~~~~~~G~~~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~~~~~g~~~~gY~~~ 161 (637) T 1gjw_A 82 KRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVK 161 (637) T ss_dssp GGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEE T ss_pred HCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 16779999713632889998754455766686779689999984799997799789949875687746678679998766 Q ss_pred --CCCCC---------CCH---HHHHHHHHHHHHCCCEEEECCCCCH Q ss_conf --21576---------537---9999999997301447986133271 Q gi|255764463|r 102 --HIIDP---------DNL---INEGICAIKKNIPNIGIITDVALDP 134 (337) Q Consensus 102 --eA~n~---------dgl---v~rAIr~IK~~fpdl~vi~DVcLc~ 134 (337) .+.+| -|- ..+-|++++++ .|-||-||-+-. T Consensus 162 dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~--Gi~VIlDvV~NH 206 (637) T 1gjw_A 162 NPMELDERYHDPLLEPFKVDEEFKAFVEACHIL--GIRVILDFIPRT 206 (637) T ss_dssp EEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHT--TCEEEEEECTTE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCC T ss_conf 776568654565544688999999999999987--999999613455 No 104 >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Probab=60.98 E-value=9 Score=18.21 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=37.7 Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCC----HH----HHHHHHHHHC-------CCCCCCEECHHHHHHHHHHC Q ss_conf 999999999999628973524667677----99----9999999877-------88577300336664354301 Q gi|255764463|r 155 IELISHAAVIQADAGADIIAPSEMMDG----RV----QEIRKKLDSH-------GHINVGIMPYVAKFNSSFYG 213 (337) Q Consensus 155 l~~L~k~Al~~A~AGaDivAPSdMMDG----rV----~aIR~~Ld~~-------g~~~~~ImsYsaKfaS~fYg 213 (337) .+.+.+.+-...++|+|.|.-.|++-. +| .++|+.+... -+.|+.=|+.+.=++.-..| T Consensus 150 ~~~~~~~~~~~~~~G~d~I~l~DT~G~~~P~~v~~l~~~~~~~~~~~~~~~l~~H~Hn~~Gla~aN~l~A~~aG 223 (325) T 3eeg_A 150 QAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNG 223 (325) T ss_dssp HHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCC T ss_conf 99999999999985999999546656617506789999998751699873378885487461999999999839 No 105 >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Probab=60.44 E-value=5.4 Score=19.69 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=63.7 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC Q ss_conf 8899999999999988893676330256334554454215765-379999999997301447986133271001143100 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337) .-.+.+.+.++.+.+.|++++.+++...+.. +-+.++- .++..++...+. .+-|++-|. + T Consensus 19 iD~~~l~~~i~~l~~~Gv~Gi~~~G~tGE~~-----~Ls~~Er~~l~~~~~~~~~~---~~~vi~gv~--------~--- 79 (291) T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEAT-----TMTETERKETIKFVIDKVNK---RIPVIAGTG--------S--- 79 (291) T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGG-----GSCHHHHHHHHHHHHHHHTT---SSCEEEECC--------C--- T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCHHHH-----HCCHHHHHHHHHHHHHHCCC---CCEEEEEEC--------C--- T ss_conf 0999999999999977999999890011165-----69999999999999986476---653898767--------8--- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCCCCCHHHHHHHHHHH-CCCCCCCEECHHHHHHHHH Q ss_conf 136544628999999999999996289735--2466767799999999987-7885773003366643543 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADII--APSEMMDGRVQEIRKKLDS-HGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdMMDGrV~aIR~~Ld~-~g~~~~~ImsYsaKfaS~f 211 (337) .+.+...+.|....++|||.| .|.-..-..-..|.+-... ..-.+.+|+-|-.-..+.+ T Consensus 80 ---------~s~~~~i~~a~~a~~~Gad~i~v~pP~~~~~~~~~i~~~f~~i~~~~~~pi~iYn~P~~~~~ 141 (291) T 3a5f_A 80 ---------NNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGL 141 (291) T ss_dssp ---------SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSC T ss_pred ---------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf ---------51999999999999708997998188778899999999999998513798899957874577 No 106 >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} Probab=60.08 E-value=9.3 Score=18.10 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=63.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC Q ss_conf 32889999999999998889367633025633455445421576537999999999730144798613327100114310 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG 142 (337) .....+.+.+.++.+.+.|+..|.+++...+- .+++.+- -.+.++...+..+..-||.-|. T Consensus 24 g~iD~~~l~~~i~~li~~Gv~Gi~v~GstGE~-------~~Ls~eE-r~~l~~~~~~~~~~~~vi~gv~----------- 84 (313) T 3dz1_A 24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILGEA-------PKLDAAE-AEAVATRFIKRAKSMQVIVGVS----------- 84 (313) T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESTGGGTG-------GGSCHHH-HHHHHHHHHHHCTTSEEEEECC----------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCH-------HHCCHHH-HHHHHHHHHHHCCCCCEEEECC----------- T ss_conf 59499999999999997599989975576662-------3389999-9999999998659976899626----------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCC--EEECCCCC---CCHHHHHHHHHHHCCCCCCCEECHHHHHHH Q ss_conf 01365446289999999999999962897--35246676---779999999998778857730033666435 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGAD--IIAPSEMM---DGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaD--ivAPSdMM---DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS 209 (337) . .+.+...+.|...+++|+| +|.|.--. ++-+..-++..+..+ .+++|+=|-....+ T Consensus 85 -----~----~st~~ai~la~~a~~~Gad~i~v~pP~~~~~~~~~~~~f~~i~~a~~-~~~Pi~iYn~P~~~ 146 (313) T 3dz1_A 85 -----A----PGFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIG-DDVPWVLQDYPLTL 146 (313) T ss_dssp -----C----SSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHC-TTSCEEEEECHHHH T ss_pred -----C----CCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCC T ss_conf -----5----10489999999998659856753100001564477899999998512-57736874376425 No 107 >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* Probab=59.61 E-value=9.5 Score=18.05 Aligned_cols=93 Identities=9% Similarity=0.023 Sum_probs=45.6 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC--CCCC Q ss_conf 99999999998889367633025633455445421576537999999999730144798613327100114310--0136 Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG--ILCD 146 (337) Q Consensus 69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG--i~~~ 146 (337) .+.+.++++.++|+++|-+|..-|..-+... ++++. ...+|...+.+. +. ..+.+.|+..- +... T Consensus 13 gl~~a~~~a~~~G~~~~qif~~~p~~w~~~~----~~~~~--~~~~r~~~~~~~-l~------~~~~~~h~py~~nl~s~ 79 (285) T 1qtw_A 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAP----LTTQT--IDEFKAACEKYH-YT------SAQILPHDSYLINLGHP 79 (285) T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCC----CCHHH--HHHHHHHHHHTT-CC------GGGBCCBCCTTCCTTCS T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCC----CCHHH--HHHHHHHHHHCC-CC------CCEEEEECCCCCCCCCC T ss_conf 7999999999749999999789977778899----99999--999999999829-99------73599847865564788 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 5446289999999999999962897352 Q gi|255764463|r 147 GEIVNDETIELISHAAVIQADAGADIIA 174 (337) Q Consensus 147 g~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337) ..-....+++.+.+.--.-++-||..|. T Consensus 80 ~~~~r~~si~~~~~~l~~a~~LGa~~vv 107 (285) T 1qtw_A 80 VTEALEKSRDAFIDEMQRCEQLGLSLLN 107 (285) T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCEEE T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 8799999999999999999980886547 No 108 >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Probab=59.38 E-value=9.6 Score=18.02 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=49.5 Q ss_pred CEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 16667589881104888786328899999999999988893676330256334554454215765379999999997301 Q gi|255764463|r 43 PIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP 122 (337) Q Consensus 43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp 122 (337) ++|+.-|..+-| |.+.+.+.++.+.+.|.+ ++|+.+=+..-+..+-....+++ .+-++.+|++| T Consensus 23 ~~~lIAGPC~iE-----------s~e~~~~iA~~lk~~~~~--~~~~~~fK~Rts~~s~~g~g~~g--l~~l~~ik~~~- 86 (262) T 1zco_A 23 GFTIIAGPCSIE-----------SREQIMKVAEFLAEVGIK--VLRGGAFKPRTSPYSFQGYGEKA--LRWMREAADEY- 86 (262) T ss_dssp SCEEEEECSBCC-----------CHHHHHHHHHHHHHTTCC--EEECBSSCCCSSTTSCCCCTHHH--HHHHHHHHHHH- T ss_pred CCEEEEECCCCC-----------CHHHHHHHHHHHHHHHHH--EECCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHC- T ss_conf 857998677116-----------999999999999996242--04365335768843256761588--99999877654- Q ss_pred CCEEEECCCCCHHH Q ss_conf 44798613327100 Q gi|255764463|r 123 NIGIITDVALDPFT 136 (337) Q Consensus 123 dl~vi~DVcLc~YT 136 (337) ++-|+|||.-...- T Consensus 87 glpv~TdVh~~~q~ 100 (262) T 1zco_A 87 GLVTVTEVMDTRHV 100 (262) T ss_dssp TCEEEEECCCGGGH T ss_pred CCEEEEECCCHHHH T ss_conf 97279852847777 No 109 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Probab=59.37 E-value=6.3 Score=19.26 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=76.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337) +.+.+.+.++.+.+.||+.+=+-- .++ + ..++|+.++++||++.|=+ T Consensus 27 ~~~~~~~~~~al~~~Gi~~iEITl------~t~--------~--a~~~i~~l~~~~p~~~vGa----------------- 73 (224) T 1vhc_A 27 NADDILPLADTLAKNGLSVAEITF------RSE--------A--AADAIRLLRANRPDFLIAA----------------- 73 (224) T ss_dssp SGGGHHHHHHHHHHTTCCEEEEET------TST--------T--HHHHHHHHHHHCTTCEEEE----------------- T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC------CCC--------H--HHHHHHHHHHHCCCEEEEE----------------- T ss_conf 999999999999987998899968------980--------3--9999999998689918962----------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC Q ss_conf 65446289999999999999962897352466767799999999987788577300336664354301016753102446 Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL 225 (337) Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~ 225 (337) |-|.|-++ +-...+|||+++---.+-+.-+..-+ +++ ++.+ | T Consensus 74 -GTVl~~~~-------~~~a~~aGA~FivSP~~~~~v~~~a~----~~~---i~~i---------------------P-- 115 (224) T 1vhc_A 74 -GTVLTAEQ-------VVLAKSSGADFVVTPGLNPKIVKLCQ----DLN---FPIT---------------------P-- 115 (224) T ss_dssp -ESCCSHHH-------HHHHHHHTCSEEECSSCCHHHHHHHH----HTT---CCEE---------------------C-- T ss_pred -ECCCCHHH-------HHHHHHHCCCEEECCCCCHHHHHHHH----HCC---CCCC---------------------C-- T ss_conf -02045799-------99999837998972789999999998----569---9845---------------------8-- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCEE Q ss_conf 7777443157211478898888766408987995531145--89999999624-99899 Q gi|255764463|r 226 KGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPTF 281 (337) Q Consensus 226 ~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~~ 281 (337) | ..... |+..=.+-|+|++=+=||-.+ ...|+.++.-+ ++|.. T Consensus 116 -G--------~~Tps----Ei~~A~~~G~~~vKlFPA~~~gG~~~lkal~~p~p~~~f~ 161 (224) T 1vhc_A 116 -G--------VNNPM----AIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIM 161 (224) T ss_dssp -E--------ECSHH----HHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTTTTCEEE T ss_pred -C--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEEE T ss_conf -8--------58879----9999998599968876521125899998565345687188 No 110 >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Probab=59.14 E-value=9.7 Score=18.00 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCC Q ss_conf 9999999999962897352466767 Q gi|255764463|r 156 ELISHAAVIQADAGADIIAPSEMMD 180 (337) Q Consensus 156 ~~L~k~Al~~A~AGaDivAPSdMMD 180 (337) +.+.+.+-...++|+|+|.-.|+.- T Consensus 149 ~~~~~~~~~~~~~g~~~i~l~DT~G 173 (345) T 1nvm_A 149 EKLAEQGKLMESYGATCIYMADSGG 173 (345) T ss_dssp HHHHHHHHHHHHHTCSEEEEECTTC T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 5677899999843970466235334 No 111 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Probab=59.08 E-value=4.8 Score=20.05 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=86.9 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCCC Q ss_conf 889999999999998889367633025633455445421576537999999999730-1447986133271001143100 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcGi 143 (337) -+.+.+.+.++.+.+-|++.+=+= ..++. + .++|+.+++.+ |++.|= T Consensus 19 ~~~~~a~~~~~al~~~Gi~~iEit------l~~p~---a-------~~~I~~l~~~~~~~~~vG---------------- 66 (205) T 1wa3_A 19 NSVEEAKEKALAVFEGGVHLIEIT------FTVPD---A-------DTVIKELSFLKEKGAIIG---------------- 66 (205) T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEE------TTSTT---H-------HHHHHHTHHHHHTTCEEE---------------- T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE------CCCCC---H-------HHHHHHHHHHCCCCEEEE---------------- T ss_conf 899999999999998799889996------89976---8-------999999997318982896---------------- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC Q ss_conf 1365446289999999999999962897-352466767799999999987788577300336664354301016753102 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGAD-IIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR 222 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaD-ivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~ 222 (337) =|.|.| .+|+-...+|||| +|.|. .| -.++.|+.++ .- T Consensus 67 --aGTV~~-------~~~~~~a~~aGa~fivsP~--~~-----------------~~v~~~~~~~-~~------------ 105 (205) T 1wa3_A 67 --AGTVTS-------VEQCRKAVESGAEFIVSPH--LD-----------------EEISQFCKEK-GV------------ 105 (205) T ss_dssp --EESCCS-------HHHHHHHHHHTCSEEECSS--CC-----------------HHHHHHHHHH-TC------------ T ss_pred --EECCCC-------HHHHHHHHHCCCCEEECCC--CC-----------------HHHHHHHHHC-CC------------ T ss_conf --300012-------7889999864874886799--99-----------------9999999983-99------------ Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH-HHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 4467777443157211478898888766408987995531145-89999999624-998999934618999999998889 Q gi|255764463|r 223 DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY-LDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 223 p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y-LDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~ 300 (337) | |=--..+..|++.. .+.|+|++-+=|+-.. ...++.++.-+ ++|+.+ .|- T Consensus 106 ~--------~iPGv~TptEi~~A----~~~G~~~vK~FPa~~~G~~~lk~l~~p~p~i~~ip---------------tGG 158 (205) T 1wa3_A 106 F--------YMPGVMTPTELVKA----MKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVP---------------TGG 158 (205) T ss_dssp E--------EECEECSHHHHHHH----HHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEE---------------BSS T ss_pred C--------CCCCCCCCHHHHHH----HHCCCCEEEECCHHHCCHHHHHHHHCCCCCCCEEE---------------ECC T ss_conf 8--------22774871589999----97699979745121047889999866589984886---------------469 Q ss_pred CCHHHHHHHHHHHHHHHCCCEEE Q ss_conf 78899999999999772699998 Q gi|255764463|r 301 INKNDAMMESLLAFKRAGCDGIF 323 (337) Q Consensus 301 ~d~~~~~~E~l~~~kRAGAd~Ii 323 (337) ++.+ .+..+.+|||+.+- T Consensus 159 V~~~-----n~~~~l~aGa~avg 176 (205) T 1wa3_A 159 VNLD-----NVCEWFKAGVLAVG 176 (205) T ss_dssp CCTT-----THHHHHHHTCSCEE T ss_pred CCHH-----HHHHHHHCCCEEEE T ss_conf 9889-----99999988992999 No 112 >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Probab=58.49 E-value=9.9 Score=17.92 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=62.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC---HH---H Q ss_conf 211478898888766408987995---53114589999999624-99899993461899999999888978---89---9 Q gi|255764463|r 236 PANVQEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN---KN---D 305 (337) Q Consensus 236 ~~n~~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d---~~---~ 305 (337) ..|..+|+.... +...|++.+ -|++.-+++++.+|+.. ..|+..+-.+.+-..+..|-+.|.-+ .+ . T Consensus 37 a~~~~eal~~~~---~~~pDlvllDi~mP~~~G~e~~~~ir~~~~~~~iivlt~~~~~~~~~~al~~Ga~~yl~Kp~~~~ 113 (153) T 3cz5_A 37 AADAGEAYRLYR---ETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPA 113 (153) T ss_dssp ESSHHHHHHHHH---TTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTT T ss_pred ECCHHHHHHHHH---CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCHH T ss_conf 899999999975---46996899964579987899999999858999689998148999999999869983896899999 Q ss_pred HHHHHHHHHHHHCCCEEEECHHHHHHHHHH Q ss_conf 999999999772699998201899999985 Q gi|255764463|r 306 AMMESLLAFKRAGCDGIFTYFAMEAARILT 335 (337) Q Consensus 306 ~~~E~l~~~kRAGAd~IitY~A~~~a~~L~ 335 (337) .+.+++....+ |- +|+.+++++-|. T Consensus 114 ~L~~ai~~v~~-g~----~~~~~~~~~~l~ 138 (153) T 3cz5_A 114 ELVQAIEAILA-GR----RAMSPDIAQEIA 138 (153) T ss_dssp HHHHHHHHHTT-TC----CEECHHHHHHHH T ss_pred HHHHHHHHHHC-CC----CCCCHHHHHHHH T ss_conf 99999999984-99----779989999999 No 113 >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* Probab=57.46 E-value=10 Score=17.81 Aligned_cols=62 Identities=10% Similarity=0.091 Sum_probs=39.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC Q ss_conf 8999999999999888936763302563345544542157653799999999973014479861332 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVAL 132 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcL 132 (337) |.+.+.+.++.+.++|++ ++|+++=+..-++..-....++|+ +-++.+|++| ++-|+|||.- T Consensus 118 s~e~~~~~A~~lk~~g~~--~~r~g~fKpRTsp~sfqG~Ge~GL--~iL~~vk~~~-glpiiTdVh~ 179 (350) T 1vr6_A 118 GREMLMETAHFLSELGVK--VLRGGAYKPRTSPYSFQGLGEKGL--EYLREAADKY-GMYVVTEALG 179 (350) T ss_dssp CHHHHHHHHHHHHHTTCC--EEECBSCCCCCSTTSCCCCTHHHH--HHHHHHHHHH-TCEEEEECSS T ss_pred CHHHHHHHHHHHHHHCCC--CCCCCEECCCCCCCCCCCCCHHHH--HHHHHHHHHC-CCCEEEEECC T ss_conf 899999999998983410--134663015678733567608899--9999999865-9806898433 No 114 >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Probab=57.07 E-value=10 Score=17.77 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=52.9 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCC Q ss_conf 99999999999888936763302563345544542157653799999999973014479861332710011431001365 Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDG 147 (337) Q Consensus 68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g 147 (337) +.-.+.++.+.+.|+..+. |+-. +.+ ..-+..+++.||+.||++.||+--+-. T Consensus 254 ~~~~era~aLv~aG~d~iv----iD~A-------hg~--s~~v~~~ik~ik~~~~~~~iiaGNVaT-------------- 306 (514) T 1jcn_A 254 EDDKYRLDLLTQAGVDVIV----LDSS-------QGN--SVYQIAMVHYIKQKYPHLQVIGGNVVT-------------- 306 (514) T ss_dssp TTHHHHHHHHHHTTCSEEE----ECCS-------CCC--SHHHHHHHHHHHHHCTTCEEEEEEECS-------------- T ss_pred HHHHHHHHHHHHCCCCEEE----EECC-------CCC--HHHHHHHHHHHHHHCCCCEEEEEEECC-------------- T ss_conf 5279999999853897799----6234-------512--778999999999768997188631236-------------- Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEE---------ECCCCCC----CHHHHHHHHHHHCCCCCCCEE Q ss_conf 44628999999999999996289735---------2466767----799999999987788577300 Q gi|255764463|r 148 EIVNDETIELISHAAVIQADAGADII---------APSEMMD----GRVQEIRKKLDSHGHINVGIM 201 (337) Q Consensus 148 ~IdND~Tl~~L~k~Al~~A~AGaDiv---------APSdMMD----GrV~aIR~~Ld~~g~~~~~Im 201 (337) .+.+..+.+||||.| |..-..- .+..+|.+.-+.....+++|. T Consensus 307 -----------~~~~~~L~~aGad~vkVGiG~Gs~CtTr~~~GvG~pq~sai~~~a~~~~~~~v~iI 362 (514) T 1jcn_A 307 -----------AAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPII 362 (514) T ss_dssp -----------HHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEE T ss_pred -----------HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE T ss_conf -----------99999999838888986034676656755223478589999999999997599289 No 115 >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, structural genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Probab=56.74 E-value=11 Score=17.73 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=67.6 Q ss_pred CCCCCCHHHHHHHHHHHCCCCC--------CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 6676779999999998778857--------73003366643543010167531024467777443157211478898888 Q gi|255764463|r 176 SEMMDGRVQEIRKKLDSHGHIN--------VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREAS 247 (337) Q Consensus 176 SdMMDGrV~aIR~~Ld~~g~~~--------~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~ 247 (337) .+-.+|.+..+-+.|...+..+ +.|.|++...- +..-.-.|.. ...|-++............ T Consensus 143 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~v~i~sf~~~~l-------~~~~~~~p~~---~~~~l~~~~~~~~~~~~~~ 212 (287) T 2oog_A 143 PDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESL-------KKIHRQNKHV---PLVKLVDKGELQQFNDQRL 212 (287) T ss_dssp TTTSTTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHH-------HHHHHHCTTS---CEEEEECTTTGGGCCHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHH-------HHHHHHCCCC---CEEEEECCCCHHHHHHHHH T ss_conf 86565337899999999766642035665257714999999-------9999868998---6899944542124467888 Q ss_pred HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 76640898799553114589999999624998999934618999999998889788999999999997726999982018 Q gi|255764463|r 248 IDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA 327 (337) Q Consensus 248 ~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A 327 (337) ..+...++.+-+-=.+-.-+.|..+++. +++|.+|-| |.+.. +.-+.+.|+|.|+|=+- T Consensus 213 ~~i~~~~~~v~~~~~~~~~~~v~~~~~~-G~~V~vwTV----------------n~~~~----~~~l~~~GVdgIiTD~P 271 (287) T 2oog_A 213 KEIRSYAIGLGPDYTDLTEQNTHHLKDL-GFIVHPYTV----------------NEKAD----MLRLNKYGVDGVFTNFA 271 (287) T ss_dssp HHHHTTCSEEEEBGGGCCHHHHHHHHHT-TCEECCBCC----------------CSHHH----HHHHHHHTCSEEEESCH T ss_pred HHHHHHHEEEECCHHHCCHHHHHHHHHC-CCEEEEECC----------------CCHHH----HHHHHHCCCCEEEECCH T ss_conf 8865200133122412899999999987-999999808----------------99999----99998669999998869 Q ss_pred HHHHHHHHC Q ss_conf 999999850 Q gi|255764463|r 328 MEAARILTH 336 (337) Q Consensus 328 ~~~a~~L~~ 336 (337) ..+.++|+| T Consensus 272 ~~~~~~lke 280 (287) T 2oog_A 272 DKYKEVIKE 280 (287) T ss_dssp HHHHHHHHC T ss_pred HHHHHHHHC T ss_conf 999999970 No 116 >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A Probab=55.91 E-value=6.5 Score=19.15 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=22.1 Q ss_pred HHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCEEE Q ss_conf 888766408987995531145--89999999624-998999 Q gi|255764463|r 245 EASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPTFA 282 (337) Q Consensus 245 e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~~a 282 (337) |+..=.+-|++++=+=||-.. ...++.++.-| .+|..+ T Consensus 116 Ei~~A~~~G~~~vK~FPA~~~Gg~~~lk~l~~p~p~i~f~p 156 (207) T 2yw3_A 116 EVERALALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLP 156 (207) T ss_dssp HHHHHHHTTCCEEEETTTTTTTHHHHHHHHHHHCTTCEEEE T ss_pred HHHHHHHCCCCEEEECHHHHCCCHHHHHHHHCCCCCCCEEE T ss_conf 99999976999798660331378999976534899880897 No 117 >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Probab=55.89 E-value=11 Score=17.64 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=49.3 Q ss_pred CHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCCCCCC--------------CC---CCCHHHHHHHHHHHHHHHHHCC Q ss_conf 3799999999973014-4798613327100114310013--------------65---4462899999999999999628 Q gi|255764463|r 108 NLINEGICAIKKNIPN-IGIITDVALDPFTIHGHDGILC--------------DG---EIVNDETIELISHAAVIQADAG 169 (337) Q Consensus 108 glv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHcGi~~--------------~g---~IdND~Tl~~L~k~Al~~A~AG 169 (337) ..+..|++.+|++.|+ .-++. -|-.|+|--+|.--.. +- .-.-+...+.+.+.+..|.+|| T Consensus 132 ~~v~eai~~~~~~l~~~vpliG-f~ggP~Tla~yli~~~~~~~~~~~~~~~~~~p~~~~~ll~~~t~~~~~~~~~qi~aG 210 (367) T 1r3s_A 132 GYVFQAITLTRQRLAGRVPLIG-FAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAG 210 (367) T ss_dssp HHHHHHHHHHHHHHTTSSCEEE-EEECHHHHHHHHHHSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 6999999999987078787143-505507899999626652026789999862878899999999999999999998448 Q ss_pred CCEEECCCCCCCH Q ss_conf 9735246676779 Q gi|255764463|r 170 ADIIAPSEMMDGR 182 (337) Q Consensus 170 aDivAPSdMMDGr 182 (337) ||+|.--|..-|. T Consensus 211 ad~i~ifds~a~~ 223 (367) T 1r3s_A 211 AQALQLFESHAGH 223 (367) T ss_dssp CSEEEEEETTGGG T ss_pred CCEEEECCCHHCC T ss_conf 9667851530200 No 118 >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, structural genomics, NPPSFA; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* Probab=55.52 E-value=11 Score=17.60 Aligned_cols=79 Identities=28% Similarity=0.273 Sum_probs=41.0 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337) .+++.+++-++++.+ .|-.+ .+.-.. +...|+ +.|+.+|+. ++..|+.|.=++ T Consensus 9 ~~~~~al~i~~~~~~-~i~~i----Kig~~l--------~~~~G~--~~i~~l~~~-~~~~i~~D~K~~----------- 61 (208) T 2czd_A 9 YEGERAIKIAKSVKD-YISMI----KVNWPL--------ILGSGV--DIIRRLKEE-TGVEIIADLKLA----------- 61 (208) T ss_dssp CSHHHHHHHHHHHGG-GCSEE----EEEHHH--------HHHHCT--THHHHHHHH-HCCEEEEEEEEC----------- T ss_pred CCHHHHHHHHHHHCC-CCEEE----EECHHH--------HHHCCH--HHHHHHHHC-CCCEEEEEEECC----------- T ss_conf 999999999998378-66099----988999--------974398--999999865-798299875201----------- Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 3654462899999999999999628973524667 Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEM 178 (337) Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM 178 (337) |-..|++.. +-..+++|||++-=... T Consensus 62 -----Dig~t~~~~---~~~~~~~gad~~Tvh~~ 87 (208) T 2czd_A 62 -----DIPNTNRLI---ARKVFGAGADYVIVHTF 87 (208) T ss_dssp -----SCHHHHHHH---HHHHHHTTCSEEEEEST T ss_pred -----CCCCHHHHH---HHHHHHCCCCEEEEECC T ss_conf -----357509999---99976169988997402 No 119 >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Probab=55.44 E-value=11 Score=17.59 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=50.3 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC---C-----------CC---CCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 799999999973014479861332710011431001---3-----------65---446289999999999999962897 Q gi|255764463|r 109 LINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL---C-----------DG---EIVNDETIELISHAAVIQADAGAD 171 (337) Q Consensus 109 lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~---~-----------~g---~IdND~Tl~~L~k~Al~~A~AGaD 171 (337) .+.++|+.+|+..++-.-+.-.|-.|+|.-++.--- . +. .-.-+...+.+.+.+..|.++||| T Consensus 129 ~~~~ai~~lk~~l~~~vplig~~ggP~Tla~~l~~~~~~~~~~~~~~~~~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad 208 (353) T 1j93_A 129 YVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQ 208 (353) T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 59999999998646787478760858999999974765566799999987483778999988899999999999851798 Q ss_pred EEECCCCCCC Q ss_conf 3524667677 Q gi|255764463|r 172 IIAPSEMMDG 181 (337) Q Consensus 172 ivAPSdMMDG 181 (337) +|.-.|..=| T Consensus 209 ~i~i~ds~a~ 218 (353) T 1j93_A 209 AVQIFDSWAT 218 (353) T ss_dssp EEEEECGGGG T ss_pred EEEEEHHHHH T ss_conf 8998201343 No 120 >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str} Probab=55.28 E-value=11 Score=17.58 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=59.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCC Q ss_conf 2889999999999998889367633025633455445421576537999999999730-144798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+.+.|+.++.+.+...+.. +++.+ =-.+.++...+.. +.+-|++-|.- T Consensus 20 ~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~-------~Ls~~-Er~~l~~~~~~~~~~~~~vi~gv~~---------- 81 (294) T 3b4u_A 20 TVDIDAMIAHARRCLSNGCDSVTLFGTTGEGC-------SVGSR-ERQAILSSFIAAGIAPSRIVTGVLV---------- 81 (294) T ss_dssp SBCHHHHHHHHHHHHHTTCSEEEESSTTTTGG-------GSCHH-HHHHHHHHHHHTTCCGGGEEEEECC---------- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-------HCCHH-HHHHHHHHHHHHCCCCCCEEECCCC---------- T ss_conf 97999999999999977999999781253353-------58999-9999998855521577753531477---------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--E-ECCCC----CCCHHHHHHHHHHHCCCCCCCEECHHH Q ss_conf 013654462899999999999999628973--5-24667----677999999999877885773003366 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADI--I-APSEM----MDGRVQEIRKKLDSHGHINVGIMPYVA 205 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDi--v-APSdM----MDGrV~aIR~~Ld~~g~~~~~ImsYsa 205 (337) .+.+.-.++|-...++|+|. | .|.-. -+|-+...+...++.+....+|+-|-. T Consensus 82 ----------~~t~~~i~~a~~a~~~Gad~ilv~~P~~~~~~~~~~~~~~~~~i~~a~~~~~lpi~~yn~ 141 (294) T 3b4u_A 82 ----------DSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNI 141 (294) T ss_dssp ----------SSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEEC T ss_pred ----------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCC T ss_conf ----------859999999999987499789870685457853789999999999862477786411688 No 121 >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Probab=54.70 E-value=11 Score=17.52 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=59.0 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC Q ss_conf 32889999999999998889367633025633455445421576537999999999730144798613327100114310 Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG 142 (337) .....+.+.+.++.+.+.|+.++.+++.+.+.. +++.+- -.+.++...+....+ +. T Consensus 15 g~iD~~~l~~~i~~l~~~Gv~Gi~v~GstGE~~-------~Ls~eE-r~~l~~~~~~~~~~~--i~-------------- 70 (288) T 2nuw_A 15 GKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGP-------ALSKDE-KRQNLNALYDVTHKL--IF-------------- 70 (288) T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGG-------GSCHHH-HHHHHHHHTTTCSCE--EE-------------- T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEEHHHHH-------HCCHHH-HHHHHHHHHHHCCCE--EE-------------- T ss_conf 398999999999999985999899782125477-------689999-999999876640343--31-------------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCC--EEECCCCC-----CCHHHHHHHHHHHCCCCCCCEECHHHHHHHH Q ss_conf 01365446289999999999999962897--35246676-----7799999999987788577300336664354 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGAD--IIAPSEMM-----DGRVQEIRKKLDSHGHINVGIMPYVAKFNSS 210 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaD--ivAPSdMM-----DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~ 210 (337) .=+...-+.|++ .+-...++|+| ++.|-... ++-+...++.-+. .+.+|+-|..-..|. T Consensus 71 --~v~~~~t~~~~~----~~~~a~~~G~d~~~~~~P~y~~~~~~~~i~~~~~~ia~~---~~~pi~iYn~P~~~g 136 (288) T 2nuw_A 71 --QVGSLNLNDVME----LVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARI---SSHSLYIYNYPAATG 136 (288) T ss_dssp --ECCCSCHHHHHH----HHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHH---CCSCEEEEECHHHHS T ss_pred --CCCCCHHHHHHH----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCC T ss_conf --245300899999----999887754021310477432311278899999998541---379854205765458 No 122 >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Probab=53.70 E-value=12 Score=17.41 Aligned_cols=57 Identities=7% Similarity=0.006 Sum_probs=40.9 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE Q ss_conf 86328899999999999988893676330256334554454215765379999999997301447 Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIG 125 (337) Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~ 125 (337) ..+..+.+.++++++++.+.|.+-|.+..+..+.. +. +-..+..+++.+|+.++.+. T Consensus 95 ~~~l~s~eeI~e~a~~~~~~G~~~i~l~~g~~~~~-~~-------~~~~~~~~i~~i~~~~~~i~ 151 (369) T 1r30_A 95 AERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH-ER-------DMPYLEQMVQGVKAMGLEAC 151 (369) T ss_dssp CCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC-TT-------THHHHHHHHHHHHHTTSEEE T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CC-------HHHHHHHHHHHHHHCCCEEE T ss_conf 54668879999999989875997999995788887-02-------79999999998520475476 No 123 >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Probab=51.94 E-value=8.5 Score=18.38 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=21.4 Q ss_pred CCEEEEC---CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 9879955---3114589999999624-998999934618999999998889 Q gi|255764463|r 254 ADMLLVK---PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 254 AD~lMVK---Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~ 300 (337) .|++.+- |++.-+|+++++|+.. ..|+...--..+-..+..|-+.|. T Consensus 51 ~DlvllD~~mP~~~G~e~l~~ir~~~p~~~iivlT~~~~~~~~~~a~~~Ga 101 (154) T 2qsj_A 51 VDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGA 101 (154) T ss_dssp CSEEEECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTC T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCC T ss_conf 978998088899888999999998788997999980289999999998599 No 124 >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2 Probab=51.08 E-value=13 Score=17.14 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=9.5 Q ss_pred HHHHHHHHHHCCCCE Q ss_conf 899999996249989 Q gi|255764463|r 266 LDVCFRIKEKFGLPT 280 (337) Q Consensus 266 LDii~~~k~~~~~P~ 280 (337) ++-|+++-+..++|+ T Consensus 339 i~~i~~~~~~lglP~ 353 (407) T 1vlj_A 339 IEAFKNWLKKVGAPV 353 (407) T ss_dssp HHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999999869999 No 125 >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Probab=50.43 E-value=13 Score=17.07 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=73.1 Q ss_pred CCCCCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 676779999999998778857-7300336664354301016753102446777744315721147889888876640898 Q gi|255764463|r 177 EMMDGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESAD 255 (337) Q Consensus 177 dMMDGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD 255 (337) |.=++-+..+-+.+.+.+..+ +.+.|++......+. . ..|.+. ..+-+......+.............+ T Consensus 138 EiK~~~~~~~~~~i~~~~~~~~v~i~Sf~~~~l~~l~----~---~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (292) T 3mz2_A 138 DKKDVPMERTAQLITDMQAEPYVMITVHDGASARFFY----E---KNPNFM---FEAFVKTKEAVQDYEDNGIPWSHIMA 207 (292) T ss_dssp CCSSSCHHHHHHHHHHTTCTTTEEEEESSHHHHHHHH----H---HCTTCC---EEEECCSHHHHHHHHHTTCCGGGEEE T ss_pred EECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH----H---HCCCCE---EEEEECCHHHHHHHHHHCCCHHHHHH T ss_conf 9347538899999997087613999979999999999----8---699956---99983542566788870771655443 Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH Q ss_conf 79955311458999999962499899993461899999999888978899999999999772699998201899999985 Q gi|255764463|r 256 MLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILT 335 (337) Q Consensus 256 ~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~ 335 (337) ++...=....-++|..+++ .++++.+|-|-.+- ...+. ..-.|.+.-+.+.|.|.|+|=+..++.++|+ T Consensus 208 ~~~~~~~~~~~~~v~~~~~-~G~~v~~wTvn~~~-------~~~~~---~~~~~~~~~l~~lGVdgI~TD~P~~l~~~l~ 276 (292) T 3mz2_A 208 YVGPKITPEVREVIDMLHE-RGVMCMISTAPSDD-------KLSTP---ESRAEAYRMIIRQGVDIIESDRPIEVAEAIS 276 (292) T ss_dssp EEESSCCHHHHHHHHHHHH-TTBCEEEECTTTGG-------GSSSH---HHHHHHHHHHHHTTCCEEEESCHHHHHHHHG T ss_pred HCCCCCCCCCHHHHHHHHH-CCCEEEEECCCCHH-------HHHHC---CCCHHHHHHHHHCCCCEEEECCHHHHHHHHH T ss_conf 3166543057999999998-79989998878667-------63211---3879999999976999999698999999998 Q ss_pred C Q ss_conf 0 Q gi|255764463|r 336 H 336 (337) Q Consensus 336 ~ 336 (337) + T Consensus 277 ~ 277 (292) T 3mz2_A 277 S 277 (292) T ss_dssp G T ss_pred H T ss_conf 6 No 126 >3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* Probab=49.70 E-value=7 Score=18.96 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHC-CCEEEECCCCCH-HHCCCC-CCCC---CCCCC Q ss_conf 999999997301-447986133271-001143-1001---36544 Q gi|255764463|r 111 NEGICAIKKNIP-NIGIITDVALDP-FTIHGH-DGIL---CDGEI 149 (337) Q Consensus 111 ~rAIr~IK~~fp-dl~vi~DVcLc~-YT~hGH-cGi~---~~g~I 149 (337) .+.-..+|+.++ +-+||.+-.+-. -.++|| |++. ..+.| T Consensus 193 ~~ie~~Lk~~lGv~~viwl~~g~~~~ddTdGHID~~arFv~~~~v 237 (383) T 3h7c_X 193 EQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVV 237 (383) T ss_dssp HHHHHHHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEE T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCE T ss_conf 999999998639777999554412798876551112686279927 No 127 >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Probab=49.62 E-value=14 Score=16.99 Aligned_cols=69 Identities=23% Similarity=0.241 Sum_probs=46.6 Q ss_pred CCCCCCC-HHHHHHHHHHHHHHCCCCEEEE--CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 4315721-1478898888766408987995--53114589999999624-99899993461899999999888978 Q gi|255764463|r 231 TYYLDPA-NVQEAIREASIDIQESADMLLV--KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 231 sYQmd~~-n~~eA~~e~~~D~~EGAD~lMV--KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) .|+...+ |..||+.... ++--|++.+ -|++.-+++++++++.. ..|+...-..++......|-+.|..| T Consensus 28 G~~v~~a~~g~eal~~l~---~~~~dlvllD~mp~~dGl~l~~~ir~~~~~~piI~lT~~~~~~~~~~a~~~Ga~d 100 (142) T 2qxy_A 28 GFNVIWAKNEQEAFTFLR---REKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVD 100 (142) T ss_dssp TCEEEEESSHHHHHHHHT---TSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSC T ss_pred CCEEEEECCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE T ss_conf 999999899999999998---5799999854786312899999999868999789997358889999999768978 No 128 >3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A Probab=49.34 E-value=14 Score=16.96 Aligned_cols=77 Identities=26% Similarity=0.186 Sum_probs=43.1 Q ss_pred CCCCCCCHHHHHHHHHHH----HHC--CCEEEECCCCCHHHCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 215765379999999997----301--44798613327100114310--0136544628999999999999996289735 Q gi|255764463|r 102 HIIDPDNLINEGICAIKK----NIP--NIGIITDVALDPFTIHGHDG--ILCDGEIVNDETIELISHAAVIQADAGADII 173 (337) Q Consensus 102 eA~n~dglv~rAIr~IK~----~fp--dl~vi~DVcLc~YT~hGHcG--i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv 173 (337) -++|-++.+-+|.|.++- .++ .++|=. |-|.-|--- .+...-|.--.|+--=..||+.-|+|||..| T Consensus 121 la~Dt~~tI~~A~~L~~l~~~~~i~~~nv~IKI-----PaT~eGi~A~~~L~~~GI~vN~TLvFS~~Qa~aaaeAga~~I 195 (337) T 3cwn_A 121 LSYDTEASIAKAKRLIKLYNDAGISNDRILIKL-----ASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLI 195 (337) T ss_dssp GTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEE-----ECSHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEE T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-----CCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE T ss_conf 034889999999999999887188876558835-----887899999999997698602121068999999996795599 Q ss_pred ECCCCCCCHHHHH Q ss_conf 2466767799999 Q gi|255764463|r 174 APSEMMDGRVQEI 186 (337) Q Consensus 174 APSdMMDGrV~aI 186 (337) +|= =||+..+ T Consensus 196 Spf---VgRi~D~ 205 (337) T 3cwn_A 196 SPY---VGRILDW 205 (337) T ss_dssp EEB---SHHHHHH T ss_pred EEE---CCCCCCH T ss_conf 641---1676323 No 129 >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Probab=48.69 E-value=14 Score=16.89 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=61.5 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC---H---HH Q ss_conf 2114788988887664089879955---3114589999999624-99899993461899999999888978---8---99 Q gi|255764463|r 236 PANVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN---K---ND 305 (337) Q Consensus 236 ~~n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d---~---~~ 305 (337) ..|..||+..... .--|++++- |++.-+++++.+++.. ..|+...-.+.+-..+..|-+.|.-+ . .. T Consensus 47 a~~~~eal~~~~~---~~pDvvllDl~mp~~~G~el~~~ir~~~~~~~vivlS~~~~~~~~~~a~~~Ga~~yl~Kp~~~~ 123 (152) T 3eul_A 47 ADDGAAALELIKA---HLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRT 123 (152) T ss_dssp ESSHHHHHHHHHH---HCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHH T ss_pred ECCHHHHHHHHHH---CCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHH T ss_conf 8999999999984---6999999818999989999999999758998599996869999999999869989997999999 Q ss_pred HHHHHHHHHHHHCCCEEEECHHHHHHHHHH Q ss_conf 999999999772699998201899999985 Q gi|255764463|r 306 AMMESLLAFKRAGCDGIFTYFAMEAARILT 335 (337) Q Consensus 306 ~~~E~l~~~kRAGAd~IitY~A~~~a~~L~ 335 (337) -+.+++....+.+ +|+.+++++.|- T Consensus 124 ~L~~aI~~~~~g~-----~~~~~~~~~~l~ 148 (152) T 3eul_A 124 EIVKAVLDCAKGR-----DVVAPSLVGGLA 148 (152) T ss_dssp HHHHHHHHHHHCC----------------- T ss_pred HHHHHHHHHHCCC-----CCCCHHHHHHHH T ss_conf 9999999998799-----977999999999 No 130 >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Probab=48.00 E-value=14 Score=16.82 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=22.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 78632889999999999998889367633025633455445421576537999999999730 Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337) Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337) +...+++.+.+++.++++.+.|+..|. .||..|. .+|+ -+.+-++.||+.+ T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~Gad~I~--------l~DT~G~--~~P~-~v~~lv~~lk~~~ 200 (464) T 2nx9_A 150 TTSPVHNLQTWVDVAQQLAELGVDSIA--------LKDMAGI--LTPY-AAEELVSTLKKQV 200 (464) T ss_dssp CCCTTCCHHHHHHHHHHHHHTTCSEEE--------EEETTSC--CCHH-HHHHHHHHHHHHC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCC--CCHH-HHHHHHHHHHHHC T ss_conf 568887889999999988746984898--------3598775--6878-9999999998627 No 131 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=47.47 E-value=14 Score=17.01 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=34.5 Q ss_pred CCCCCC-HHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 315721-14788988887664089879955---3114589999999624-998999934618999999998889 Q gi|255764463|r 232 YYLDPA-NVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 232 YQmd~~-n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~ 300 (337) |+...+ |..||+.... ++--|++.+- |++.=+++++.+|+.. ..|+...--.++......|-+.|. T Consensus 32 ~~v~~a~~g~~Al~~l~---~~~~dlvi~D~~mP~~dG~~~~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~Ga 102 (130) T 3eod_A 32 ATTVLAADGVDALELLG---GFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV 102 (130) T ss_dssp CEEEEESCHHHHHHHHT---TCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCC T ss_pred CEEEEECCHHHHHHHHH---CCCCCEEHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC T ss_conf 99999899999999985---289887457421799989999999996098998999989999999999998699 No 132 >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A Probab=47.46 E-value=15 Score=16.77 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=62.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301-44798613327100114310 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG 142 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG 142 (337) ....+.+.+.++.+.+.|+..|.+++...+.. +-+.++- .+.++...+..+ ..-||+-| |+ T Consensus 48 ~ID~~~l~~~i~~l~~~Gv~Gi~v~GstGE~~-----~Ls~eEr---~~l~~~~~~~~~~r~pvi~gv--------~~-- 109 (343) T 2v9d_A 48 QLDKPGTAALIDDLIKAGVDGLFFLGSGGEFS-----QLGAEER---KAIARFAIDHVDRRVPVLIGT--------GG-- 109 (343) T ss_dssp SBCHHHHHHHHHHHHHTTCSCEEESSTTTTGG-----GSCHHHH---HHHHHHHHHHHTTSSCEEEEC--------CS-- T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEEHHHHH-----HCCHHHH---HHHHHHHHHHCCCCCCEEEEC--------CC-- T ss_conf 95999999999999985999899775577467-----6729999---999999999738988279854--------87-- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCCC---CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH Q ss_conf 01365446289999999999999962897352---46676---77999999999877885773003366643543 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEMM---DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdMM---DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337) .+.+...+++...+++|+|-+. |.-.- ++-+..-+...|. .+.+|+-|-....+.+ T Consensus 110 ----------~st~~~~~~a~~a~~~G~dav~v~pP~~~~~~~~~~~~~f~~i~~a---~~~Pi~iYn~P~~~g~ 171 (343) T 2v9d_A 110 ----------TNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADS---VTLPVMLYNFPALTGQ 171 (343) T ss_dssp ----------SCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHT---CSSCEEEEECHHHHSS T ss_pred ----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCCCHHH T ss_conf ----------8899999999999853898588435313455508899999999985---6996899966730333 No 133 >1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Probab=46.96 E-value=15 Score=16.72 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH-HCCCC Q ss_conf 999999999999888936763302563345544542157653799999999973014479861332710-01143 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF-TIHGH 140 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y-T~hGH 140 (337) =.++...++.+.+.|.+.|.+.-.+.. +.+|+.+.+.||++-|+| .|+|+- +++|. T Consensus 149 G~s~~~ai~~L~~~G~~~I~~v~~ias-----------------~~Gi~~i~~~~P~v~I~t-a~iD~~Lne~gy 205 (221) T 1o5o_A 149 GVSSIKAIEILKENGAKKITLVALIAA-----------------PEGVEAVEKKYEDVKIYV-AALDERLNDHGY 205 (221) T ss_dssp SHHHHHHHHHHHHTTCCEEEEECSEEC-----------------HHHHHHHHHHCTTCEEEE-SEECSEECTTSC T ss_pred CHHHHHHHHHHHHCCCCEEEEEEEEEC-----------------HHHHHHHHHHCCCCEEEE-EEECCCCCCCCC T ss_conf 712999999998659970899998855-----------------899999998787988999-984586079987 No 134 >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M} Probab=46.34 E-value=15 Score=16.66 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=18.9 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 288999999999999888936763 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAI 87 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~L 87 (337) ++|.+..++.++.+.++||..|=+ T Consensus 22 ~~~~~~k~~i~~~L~~aGv~~IEv 45 (295) T 1ydn_A 22 FVPTADKIALINRLSDCGYARIEA 45 (295) T ss_dssp CCCHHHHHHHHHHHTTTTCSEEEE T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 989999999999999819998998 No 135 >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, hydrolase; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Probab=45.80 E-value=16 Score=16.60 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=38.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC---CCCC-----------CC-CHHHHHHHH-HHHHHC-CCEEEEC Q ss_conf 99999999999988893676330256334554454---2157-----------65-379999999-997301-4479861 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS---HIID-----------PD-NLINEGICA-IKKNIP-NIGIITD 129 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs---eA~n-----------~d-glv~rAIr~-IK~~fp-dl~vi~D 129 (337) .+.|.+.+..+.+|||++|-|=|+.+.......|- ..|+ +. |=. ...++ +++.-. .|-||.| T Consensus 24 ~~~i~~kldyL~~LGv~aIwl~Pi~~~~~~~~~GY~~~~~y~~~~~~~~~~vd~~~Gt~-~dfk~LV~~aH~~GI~VIlD 102 (485) T 1wpc_A 24 WNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTR-SQLQAAVTSLKNNGIQVYGD 102 (485) T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSSCCH-HHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCEEEEE T ss_conf 99999968999971998899695700888788887755665554444467658899999-99999999999889989999 Q ss_pred CCC Q ss_conf 332 Q gi|255764463|r 130 VAL 132 (337) Q Consensus 130 VcL 132 (337) +-+ T Consensus 103 vV~ 105 (485) T 1wpc_A 103 VVM 105 (485) T ss_dssp ECC T ss_pred EEC T ss_conf 814 No 136 >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Probab=45.61 E-value=16 Score=16.58 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=43.7 Q ss_pred CCCCCC-HHHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCH Q ss_conf 315721-1478898888766408987995---53114589999999624-998999934618999999998889788 Q gi|255764463|r 232 YYLDPA-NVQEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINK 303 (337) Q Consensus 232 YQmd~~-n~~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~ 303 (337) |+...+ |..+|+.... .+.-|++.. =|+|.=+++++.+++.. .+|+...--.++......|-+.|..|+ T Consensus 28 ~~v~~a~~~~~al~~l~---~~~~dliilD~~mP~~dGle~~~~ir~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dy 101 (155) T 1qkk_A 28 FTVSSFASATEALAGLS---ADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDF 101 (155) T ss_dssp CEEEEESCHHHHHHTCC---TTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEE T ss_pred CEEEEECCHHHHHHHHH---CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE T ss_conf 98999789999999853---269877765457899989999999997298994898979899999999998699889 No 137 >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Probab=45.06 E-value=10 Score=17.89 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=40.4 Q ss_pred CCCCCCCH-HHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHH-HCCCCC Q ss_conf 43157211-478898888766408987995---53114589999999624-99899993461899999999-888978 Q gi|255764463|r 231 TYYLDPAN-VQEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAAS-LQGWIN 302 (337) Q Consensus 231 sYQmd~~n-~~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~-~~g~~d 302 (337) .|+...+. ..+|+.... .+--|++.+ =|+|.=+++++.+|+.. ..|+..---.++......+. +.|..| T Consensus 24 g~~v~~a~~~~~al~~~~---~~~~dlvl~D~~mP~~~G~ell~~ir~~~~~~~vI~lt~~~~~~~~~~a~~~~Ga~d 98 (139) T 2jk1_A 24 DFDVLTAQGAEAAIAILE---EEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQ 98 (139) T ss_dssp TSCEEEESSHHHHHHHHH---HSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHTTCCE T ss_pred CCEEEEECCHHHHHHHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCE T ss_conf 999999899999999997---289999998556789855999999998189995899989799899999999859980 No 138 >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomics, NPPSFA; 2.00A {Geobacillus kaustophilus HTA426} Probab=44.56 E-value=16 Score=16.47 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=92.8 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337) -+.++++++++.+...|+..|=+= ++ -..+ .++..-+...++.+++.++++-+|. ++-+-...|+ . T Consensus 29 ~t~~e~l~~~~~~~~~~~D~vElR--lD-~l~~------~~~~~~~~~~~~~l~~~~~~~PiI~--T~R~~~eGG~---~ 94 (257) T 2yr1_A 29 EDDRKVLREAEEVCRKQPDLLEWR--AD-FFRA------IDDQERVLATANGLRNIAGEIPILF--TIRSEREGGQ---P 94 (257) T ss_dssp SSHHHHHHHHHHHHHSCCSEEEEE--GG-GCTT------TTCHHHHHHHHHHHHHHSSSCCEEE--ECCCTTTTCC---C T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--EE-CCCC------CCCHHHHHHHHHHHHHHCCCCCEEE--EEEEHHHCCC---C T ss_conf 998999999998755698999997--53-3234------7998999999999997458997899--9930655898---8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC Q ss_conf 36544628999999999999996289735246676779999999998778857730033666435430101675310244 Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337) Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337) .-+.++-...|.+.++.. ..+|+|-=-.-++.++..+++..... ....|+||- . T Consensus 95 ---~~~~~~~~~~l~~~~~~~--~~~d~vDiEl~~~~~~~~~~~~~~~~--~~~vI~S~H-------------------~ 148 (257) T 2yr1_A 95 ---IPLNEAEVRRLIEAICRS--GAIDLVDYELAYGERIADVRRMTEEC--SVWLVVSRH-------------------Y 148 (257) T ss_dssp ---CSSCHHHHHHHHHHHHHH--TCCSEEEEEGGGTTHHHHHHHHHHHT--TCEEEEEEE-------------------E T ss_pred ---CCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEEE-------------------C T ss_conf ---999999999999888744--99607874202203489999987627--978999763-------------------6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEE-CC------CHHHHHHHHHHHHHCCCCEEEEECCHHH Q ss_conf 67777443157211478898888766-408987995-53------1145899999996249989999346189 Q gi|255764463|r 225 LKGDKKTYYLDPANVQEAIREASIDI-QESADMLLV-KP------GLPYLDVCFRIKEKFGLPTFAYQVSGEY 289 (337) Q Consensus 225 ~~gdr~sYQmd~~n~~eA~~e~~~D~-~EGAD~lMV-KP------a~~yLDii~~~k~~~~~P~~aYqVSGEY 289 (337) |.+ .| ..+.+.+...+. .-|||++=+ -. .+..|.++..+++.+..|+.++.- ||+ T Consensus 149 f~~-------tp--~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~l~ll~~~~~~~~~~~~p~i~~~M-G~~ 211 (257) T 2yr1_A 149 FDG-------TP--RKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAM-GGL 211 (257) T ss_dssp SSC-------CC--CHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEEC-TTT T ss_pred CCC-------CC--CHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEC-CCC T ss_conf 899-------98--9899999999998728999999985798889999999999987357998899976-987 No 139 >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Probab=43.86 E-value=17 Score=16.40 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=89.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEECCC-CCCCHHHHHHHHHHHCCC---CCCCEECHHHHHHHHHHCCHHHHHHCCCC Q ss_conf 46289999999999999962897352466-767799999999987788---57730033666435430101675310244 Q gi|255764463|r 149 IVNDETIELISHAAVIQADAGADIIAPSE-MMDGRVQEIRKKLDSHGH---INVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337) Q Consensus 149 IdND~Tl~~L~k~Al~~A~AGaDivAPSd-MMDGrV~aIR~~Ld~~g~---~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337) ...+.|-+.+++.+....++|+.+|.=-. ...-.|++||++|+..-= ....+.+-+.-..-.+..+|-- +|-.-+ T Consensus 245 ~~~~~~pe~fa~~~~~w~e~Ga~IIGGCCGTtPeHI~aL~~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~-iGERiN 323 (566) T 1q7z_A 245 TVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGNRKPLQRKKKRIFAVSSPSKLVTFDHFVV-IGERIN 323 (566) T ss_dssp EECCCCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHHHHCSCCCCCCCCCCCCEEECSSCEEESSSCEE-EEEEEC T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHEE-CCCCCC T ss_conf 2267998999999999998599588104569879999999986438998878776434467642334310000-132024 Q ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHH-------HHHHHHHHHCCCCEEEEECCHHHHHHHHHH Q ss_conf 677774-431572114788988887664089879955311458-------999999962499899993461899999999 Q gi|255764463|r 225 LKGDKK-TYYLDPANVQEAIREASIDIQESADMLLVKPGLPYL-------DVCFRIKEKFGLPTFAYQVSGEYAMIKAAS 296 (337) Q Consensus 225 ~~gdr~-sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yL-------Dii~~~k~~~~~P~~aYqVSGEYami~~a~ 296 (337) ..|.++ ...|--.+...++.++..-+++||++|=|-.+.+-. -+|..+.+.+++|+..=-. ...-|.+|- T Consensus 324 ~tg~~~~~~~i~~~d~~~~~~~a~~Q~~~GA~~lDvn~~~~~~~e~~~m~~~v~~~~~~~~~Pl~iDS~--~~~viea~L 401 (566) T 1q7z_A 324 PAGRKKLWAEMQKGNEEIVIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVSNVPLSLDIQ--NVDLTERAL 401 (566) T ss_dssp CTTCHHHHHHHHTTCCHHHHHHHHHHHHTTCSEEEEECSSGGGSCHHHHHHHHHHHHHHTCSCEEEECC--CHHHHHHHH T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC--CHHHHHHHH T ss_conf 533788999987133167999999999869987862067641267999999999998538987242688--799999999 Q ss_pred HC--C--CCC----HHHHHHHHHHHHHHHCCCEEEE Q ss_conf 88--8--978----8999999999997726999982 Q gi|255764463|r 297 LQ--G--WIN----KNDAMMESLLAFKRAGCDGIFT 324 (337) Q Consensus 297 ~~--g--~~d----~~~~~~E~l~~~kRAGAd~Iit 324 (337) +. | .+| ++.-+.+.+--.|+-||.+|.- T Consensus 402 ~~~~g~~iiNSi~~~~~~~~~~~~l~k~yga~vv~l 437 (566) T 1q7z_A 402 RAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVL 437 (566) T ss_dssp HHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEE T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 963899726653477520589999999739868998 No 140 >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 1loq_A* 1lor_A* 1kly_A* 3lhz_A* 3m44_A 3lhw_A* ... Probab=43.81 E-value=17 Score=16.40 Aligned_cols=96 Identities=23% Similarity=0.203 Sum_probs=51.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337) +.+++++-++.+. +.+-.| .+ |.+-+...| .+.|+.+|+.||.- |+.|.=+ T Consensus 23 ~~~~al~i~~~l~----~~v~~i-Ki--------G~~l~~~~G--~~~i~~l~~~~~~~-if~D~K~------------- 73 (228) T 3m47_A 23 NRDDALRVTGEVR----EYIDTV-KI--------GYPLVLSEG--MDIIAEFRKRFGCR-IIADFKV------------- 73 (228) T ss_dssp SHHHHHHHHHTTT----TTCSEE-EE--------EHHHHHHHC--THHHHHHHHHHCCE-EEEEEEE------------- T ss_pred CHHHHHHHHHHHC----CCCCEE-EE--------CHHHHHHCC--HHHHHHHHHHCCCC-EEEEEEE------------- T ss_conf 9999999999847----857499-98--------899996339--89999999768982-9996010------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHCCCC Q ss_conf 6544628999999999999996289735246676-77999999999877885 Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAPSEMM-DGRVQEIRKKLDSHGHI 196 (337) Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM-DGrV~aIR~~Ld~~g~~ 196 (337) -|-..|+...++ ...++|||++-=.... ...+.+..++.++.|.. T Consensus 74 ---~DIp~T~~~~~~---~~~~~gad~~TVh~~~g~~~i~~~~~~~~~~~~~ 119 (228) T 3m47_A 74 ---ADIPETNEKICR---ATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE 119 (228) T ss_dssp ---CSCHHHHHHHHH---HHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCE T ss_pred ---CCHHHHHHHHHH---HHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCE T ss_conf ---007779999999---9985599899996679978999999998840980 No 141 >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Probab=43.76 E-value=17 Score=16.39 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.7 Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 4888786-328899999999999988893676330 Q gi|255764463|r 56 INSMPDV-MRMSIDVAVEKIKQVADLGIPAIAIFP 89 (337) Q Consensus 56 I~SMPGv-~R~Sid~L~~eie~~~~lGI~av~LFp 89 (337) |+.+-|- ...|++.+++|++.+.+.|.+.|.|+. T Consensus 23 ip~~rG~~rsr~~e~Ii~Ei~~l~~~G~kei~l~~ 57 (304) T 2qgq_A 23 IPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVA 57 (304) T ss_dssp -----CCCCBCCHHHHHHHHHHHHHTTCCEEEEEC T ss_pred EEEEECCEEEECHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 62014983771999999999999986990999985 No 142 >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, loop-6, purine biosynthesis; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Probab=43.74 E-value=17 Score=16.39 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=34.2 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE----ECC-------- Q ss_conf 79999999997301447986133271001143100136544628999999999999996289735----246-------- Q gi|255764463|r 109 LINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII----APS-------- 176 (337) Q Consensus 109 lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv----APS-------- 176 (337) .+...|+.||+.||++.||+=-+-. .++|.-+.++|||.| .|- T Consensus 180 ~~~~~ik~ik~~~p~~~VIaGNV~T-------------------------~e~a~~L~~~GAD~VkVGiG~Gs~CtTr~~ 234 (404) T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVT-------------------------KEAALDLISVGADCLKVGIGPGSICTTRIV 234 (404) T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECS-------------------------HHHHHHHHTTTCSEEEECSSCSTTSHHHHH T ss_pred HHHHHHHHHHHHCCCCCEECCCCCC-------------------------HHHHHHHHHCCCCEEEECCCCCCCCCCCCE T ss_conf 8999999999878998677145556-------------------------999999997599966752557866567411 Q ss_pred -CCCCCHHHHHHHHHHHCCCCCCCEEC Q ss_conf -67677999999999877885773003 Q gi|255764463|r 177 -EMMDGRVQEIRKKLDSHGHINVGIMP 202 (337) Q Consensus 177 -dMMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337) +---.|..++.+..+.....+++|.+ T Consensus 235 tGvG~pq~sAv~~~~~~~~~~~vpIIA 261 (404) T 1eep_A 235 AGVGVPQITAICDVYEACNNTNICIIA 261 (404) T ss_dssp HCCCCCHHHHHHHHHHHHTTSSCEEEE T ss_pred ECCCCCHHHHHHHHHHHHCCCCCCEEC T ss_conf 355511489999999986246876673 No 143 >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Probab=43.01 E-value=17 Score=16.32 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.6 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE-EECCC Q ss_conf 63288999999999999888936763-30256 Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAI-FPNIP 92 (337) Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~L-Fp~I~ 92 (337) -.++|.+..++.++.+.+.||+.|=+ ||+.+ T Consensus 21 ~~~~s~~~k~~i~~~L~~aGv~~IEvg~~~~~ 52 (293) T 3ewb_X 21 GVNFDVKEKIQIALQLEKLGIDVIEAGFPISS 52 (293) T ss_dssp --CCCHHHHHHHHHHHHHHTCSEEEEECGGGC T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 99989999999999999839699999668788 No 144 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=42.39 E-value=17 Score=16.26 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=40.5 Q ss_pred CCCCCCCHH-HHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 431572114-78898888766408987995---53114589999999624-99899993461899999999888978 Q gi|255764463|r 231 TYYLDPANV-QEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 231 sYQmd~~n~-~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) .|+...++. .+|+.... ++--|++.. =|.+.=+++++.+|+.. .+|+...-..++-.....|.+.|.+| T Consensus 31 g~~v~~a~~~~~Al~~l~---~~~~dliilD~~mp~~~G~~~l~~ir~~~~~~piI~lt~~~~~~~~~~ai~~Gavd 104 (154) T 2rjn_A 31 GCNIITFTSPLDALEALK---GTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKIS 104 (154) T ss_dssp TCEEEEESCHHHHHHHHT---TSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCS T ss_pred CCEEEEECCHHHHHHHHH---CCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCC T ss_conf 998999899999999986---28998899668888888189999999858899789998669999999999769998 No 145 >3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12} Probab=41.81 E-value=16 Score=16.49 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=46.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 2114788988887664089879955---3114589999999624-99899993461899999999888978 Q gi|255764463|r 236 PANVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 236 ~~n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) ..|..||+..... +--|++++- |++.-+++++.+|++. ..|+..+-.+.+-.....|.+.|.-+ T Consensus 32 a~~g~~al~~~~~---~~pDlvilD~~mP~~~G~e~~~~lr~~~~~~~iivlS~~~~~~~~~~a~~~Ga~~ 99 (134) T 3f6c_A 32 LTEGGSAVQRVET---LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANG 99 (134) T ss_dssp ESSSTTHHHHHHH---HCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSE T ss_pred ECCHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE T ss_conf 8999999999872---6999999959999998999999999529998389996789999999999879989 No 146 >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} Probab=41.68 E-value=8.6 Score=18.35 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCEE Q ss_conf 8999999999999996289735 Q gi|255764463|r 152 DETIELISHAAVIQADAGADII 173 (337) Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDiv 173 (337) .++++.+.+..-.-++-||+.| T Consensus 103 ~~ai~~~k~~id~A~~lGa~~v 124 (333) T 3ktc_A 103 AAAFELMHESAGIVRELGANYV 124 (333) T ss_dssp HHHHHHHHHHHHHHHHHTCSEE T ss_pred HHHHHHHHHHHHHHHHHCCCEE T ss_conf 9999999999999998499726 No 147 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=41.61 E-value=18 Score=16.18 Aligned_cols=83 Identities=16% Similarity=0.318 Sum_probs=48.4 Q ss_pred ECCCCCCC-----CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------HCC Q ss_conf 04888786-----3288999999999999888936763302563345544542157653799999999973------014 Q gi|255764463|r 55 SINSMPDV-----MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN------IPN 123 (337) Q Consensus 55 ~I~SMPGv-----~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~------fpd 123 (337) .+..+|+. .-.+-+.+.+.++++.+.|++++++|..--.+. ++.| .-.++.+.++-.+ =|+ T Consensus 57 sl~dlp~~~Dlavi~vp~~~v~~~~~e~~~~gv~~~vi~s~Gf~e~-~~~g-------~~~~~~l~~~a~~~g~riiGPN 128 (457) T 2csu_A 57 SVKDIPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGET-GEEG-------KREEKELVEIAHKYGMRIIGPN 128 (457) T ss_dssp STTSCSSCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTS-CHHH-------HHHHHHHHHHHHHHTCEEECSS T ss_pred CHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCC-------HHHHHHHHHHHHHCCCEEECCC T ss_conf 9888699989899995778889999999975998899716666532-2212-------4689999998875697796368 Q ss_pred -CEEEE-----CCCCCHHHCCCCCCCCC Q ss_conf -47986-----13327100114310013 Q gi|255764463|r 124 -IGIIT-----DVALDPFTIHGHDGILC 145 (337) Q Consensus 124 -l~vi~-----DVcLc~YT~hGHcGi~~ 145 (337) ++++. .....+....||.|++. T Consensus 129 c~G~i~~~~~~~~~~~~~~~~G~ialvs 156 (457) T 2csu_A 129 CVGIMNTHVDLNATFITVAKKGNVAFIS 156 (457) T ss_dssp CCEEEEGGGTEEEESSCCCEECSEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 6663066312466544316999779996 No 148 >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Probab=41.41 E-value=18 Score=16.16 Aligned_cols=106 Identities=14% Similarity=0.175 Sum_probs=58.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC--CCCCCCCH------------HHHHHHHHHHHHCCCEEEECCC Q ss_conf 899999999999988893676330256334554454--21576537------------9999999997301447986133 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS--HIIDPDNL------------INEGICAIKKNIPNIGIITDVA 131 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs--eA~n~dgl------------v~rAIr~IK~~fpdl~vi~DVc 131 (337) .+..+.+.+..+.++|+++|-|-|+-+....+..|. +.|++.++ ..+.|++++++ .|-||.|+. T Consensus 28 d~~gi~~kLdyl~~LGv~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~vd~~~Gt~~dfk~Lv~~aH~~--Gi~VilD~V 105 (449) T 3dhu_A 28 NFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHEL--GMKVMLDIV 105 (449) T ss_dssp SHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHT--TCEEEEEEC T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEE T ss_conf 999999704999976998899499673877788887899867445687585679999999999999987--999986562 Q ss_pred CCHHHC-------------CCCCCCCC----------CCCCCHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 271001-------------14310013----------65446289999999999999962897352 Q gi|255764463|r 132 LDPFTI-------------HGHDGILC----------DGEIVNDETIELISHAAVIQADAGADIIA 174 (337) Q Consensus 132 Lc~YT~-------------hGHcGi~~----------~g~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337) +-.-+. +-.+|-.. +=.-.|.+..+.+.+ .+.+=+-|+|-.- T Consensus 106 ~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~~~~-~l~~W~~gvDGfR 170 (449) T 3dhu_A 106 YNHTSPDSVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQID-TLLYWSQFVDGYR 170 (449) T ss_dssp CSEECTTSHHHHHCGGGBCBCTTSCBCCSSTTCTTCEEBCTTSHHHHHHHHH-HHHHHTTTCSEEE T ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHCCCCEE T ss_conf 2544441001023775321256676544454666555535478788778889-9986441268716 No 149 >3k13_A 5-methyltetrahydrofolate-homocysteine methyltransferase; 5-methyltetrahydrofolate,methyltransferase, TIM barrel; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} Probab=40.06 E-value=19 Score=16.02 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=85.9 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH---HHHHCCCEEEECCC-------- Q ss_conf 3288999999999999888936763302563345544542157653799999999---97301447986133-------- Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAI---KKNIPNIGIITDVA-------- 131 (337) Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~I---K~~fpdl~vi~DVc-------- 131 (337) ..-..+.+++.+.+-.+.|-.-+=+=|+ +...++.--+.|.+..| .+.+ ++-|..|.- T Consensus 32 ~~~d~d~a~~~A~~qv~~GA~iIDVn~G----------~~~v~~~ee~~rvv~~I~~i~~~~-dvPisIDT~~~~v~eaa 100 (300) T 3k13_A 32 NEKKYDEALSIARQQVEDGALVIDVNMD----------DGLLDARTEMTTFLNLIMSEPEIA-RVPVMIDSSKWEVIEAG 100 (300) T ss_dssp HTTCHHHHHHHHHHHHHTTCSEEEEECC----------CTTSCHHHHHHHHHHHHHTCHHHH-TSCEEEECSCHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEECCC----------CCCCCHHHHHHHHHHHHHHHHHCC-CCCEEECCCCHHHHHHH T ss_conf 8679999999999999869998985899----------888888999999999999855116-87647358878999999 Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC----CC---CCCHHHHH---HH-HHHHCCCCCC-- Q ss_conf 271001143100136544628999999999999996289735246----67---67799999---99-9987788577-- Q gi|255764463|r 132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPS----EM---MDGRVQEI---RK-KLDSHGHINV-- 198 (337) Q Consensus 132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS----dM---MDGrV~aI---R~-~Ld~~g~~~~-- 198 (337) |..| -|.+.+-.-..- ...+.+.+.+-.-++-|+.+|+-. .| -..||... +. ..++.|...- T Consensus 101 L~~~--~g~~~insi~~~---~~~~~~~~~~~la~~y~a~vi~l~~d~~g~~~~~~~~v~~~~~~~~~~a~~aGi~~e~I 175 (300) T 3k13_A 101 LKCL--QGKSIVNSISLK---EGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDI 175 (300) T ss_dssp HHHC--SSCCEEEEECST---TCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGE T ss_pred HHHH--CCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE T ss_conf 9984--378775444434---32777787628998769874303345677898799999999999999998538988995 Q ss_pred ----CEECHHHHHH--HH-------HHCCHHHHH-HCCCCCCCCCCCCCCCCCHH-HHHHHHH--HHHHHCCCCEEEECC Q ss_conf ----3003366643--54-------301016753-10244677774431572114-7889888--876640898799553 Q gi|255764463|r 199 ----GIMPYVAKFN--SS-------FYGPYRDAI-STRDLLKGDKKTYYLDPANV-QEAIREA--SIDIQESADMLLVKP 261 (337) Q Consensus 199 ----~ImsYsaKfa--S~-------fYgPFRdA~-~S~p~~~gdr~sYQmd~~n~-~eA~~e~--~~D~~EGAD~lMVKP 261 (337) .++.-++.-. .. +-.-++.-. +..-...-..-|+-++.++. ++.+..+ ..-+.-|-|.-.+.| T Consensus 176 iiDPl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~GlSNiSfglp~~~~~r~~ln~~Fl~~ai~aGLd~aI~np 255 (300) T 3k13_A 176 IFDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIVNP 255 (300) T ss_dssp EEECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEECC T ss_pred EEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCH T ss_conf 76031243204608889999999999999875467762786321000578863178999999999999985886320795 Q ss_pred CH Q ss_conf 11 Q gi|255764463|r 262 GL 263 (337) Q Consensus 262 a~ 263 (337) .- T Consensus 256 ~d 257 (300) T 3k13_A 256 GT 257 (300) T ss_dssp C- T ss_pred HH T ss_conf 33 No 150 >1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Probab=40.03 E-value=19 Score=16.02 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=34.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCH Q ss_conf 99999999999988893676330256334554454215765379999999997301447986133271 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~ 134 (337) =.++...++.+.+.|++.|.+.-.+.. +..|+.+.++|||+-|+|= |+|| T Consensus 137 G~s~~~ai~~L~~~G~~~I~~vs~ias-----------------~~Gl~~l~~~~P~v~I~t~-~iD~ 186 (209) T 1i5e_A 137 GGSAVAAIDALKKRGAKSIKFMCLIAA-----------------PEGVKAVETAHPDVDIYIA-ALDE 186 (209) T ss_dssp SHHHHHHHHHHHHTTCCCEEEECSEEC-----------------HHHHHHHHHHCTTCEEEES-EECC T ss_pred CHHHHHHHHHHHHCCCCCEEEEEEECC-----------------HHHHHHHHHHCCCCEEEEE-EECC T ss_conf 777999999999669985799998507-----------------9999999987949789999-9678 No 151 >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} Probab=40.00 E-value=19 Score=16.01 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=34.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE--------CHHHHHHHHH Q ss_conf 14589999999624998999934618999999998889788999999999997726999982--------0189999998 Q gi|255764463|r 263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT--------YFAMEAARIL 334 (337) Q Consensus 263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit--------Y~A~~~a~~L 334 (337) .+-++.+..+......|+.+-.-.+ .. +-++|+. ..|++.+++ +.-.++.++| T Consensus 160 g~d~~~i~~~s~~~~~P~i~~gG~~--------------~~-e~l~e~~----~~g~~a~~~gs~~~~~~~~i~e~k~~L 220 (237) T 3cwo_X 160 GYDTEMIRFVRPLTTLPIIASGGAG--------------KM-EHFLEAF----LAGADAALAASVFHFREIDVRELKEYL 220 (237) T ss_dssp CCCHHHHHHHGGGCCSCEEEESCCC--------------SH-HHHHHHH----HHTCSEEEESHHHHTTSSCHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCEEEECCCC--------------CH-HHHHHHH----HCCCCEEEEHHHHHCCCCCHHHHHHHH T ss_conf 5437988877651102147656668--------------89-9999998----579815644015643898899999999 Q ss_pred HC Q ss_conf 50 Q gi|255764463|r 335 TH 336 (337) Q Consensus 335 ~~ 336 (337) ++ T Consensus 221 ~~ 222 (237) T 3cwo_X 221 KK 222 (237) T ss_dssp HT T ss_pred HH T ss_conf 98 No 152 >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} Probab=39.06 E-value=20 Score=15.92 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=24.4 Q ss_pred CCCEEEECCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 31166675898811048887863-2889999999999998889367633 Q gi|255764463|r 41 ILPIFLTSGEKTVESINSMPDVM-RMSIDVAVEKIKQVADLGIPAIAIF 88 (337) Q Consensus 41 I~PiFV~eg~~~k~~I~SMPGv~-R~Sid~L~~eie~~~~lGI~av~LF 88 (337) +-|-+|+=-.+.++++.|=-|.. .-..+.|.+.++++.+.||+ |-|| T Consensus 114 ~kP~qvtLVPE~r~elTTegGlDv~~~~~~L~~~i~~Lk~~gIr-VSLF 161 (278) T 3gk0_A 114 IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVR-VSLF 161 (278) T ss_dssp HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCE-EEEE T ss_pred CCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCC-EEEE T ss_conf 69987998888855545557662062599999999999974981-7998 No 153 >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.48A {Mesorhizobium loti MAFF303099} Probab=38.74 E-value=20 Score=15.88 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=87.4 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCC Q ss_conf 86328899999999999988893676330256334554454215765379999999997301-44798613327100114 Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHG 139 (337) Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hG 139 (337) +.+..+.+.+.+++++..+.|.++|-+=.+-. |. . --.+.++++++.++ ++-++.|.. +.| T Consensus 140 ~~~~~~~~~~~~~~~~~~~~Gf~~~Kik~G~~----d~------~---~di~~v~~ir~~~g~~~~l~vDaN-~~~---- 201 (389) T 2oz8_A 140 LDFHLDDDAFVSLFSHAASIGYSAFKIKVGHR----DF------D---RDLRRLELLKTCVPAGSKVMIDPN-EAW---- 201 (389) T ss_dssp CBTTCCHHHHHHHHHHHHHTTCCEEEEECCCS----SH------H---HHHHHHHHHHTTSCTTCEEEEECT-TCB---- T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC----CH------H---HHHHHHHHHHHHHCCCCEEEECCC-CCC---- T ss_conf 67789999999999999867997784266778----77------8---899999999987456856985255-688---- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---E--CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC Q ss_conf 3100136544628999999999999996289735---2--4667677999999999877885773003366643543010 Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADII---A--PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337) Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---A--PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337) +.++.+..+. ....+|.++. - |.+-.+|- ..+|+. ..+++ T Consensus 202 ----------~~~~A~~~~~----~~~~~~~~l~~iEeP~~~~d~~~l-~~L~~~------~~~~~-------------- 246 (389) T 2oz8_A 202 ----------TSKEALTKLV----AIREAGHDLLWVEDPILRHDHDGL-RTLRHA------VTWTQ-------------- 246 (389) T ss_dssp ----------CHHHHHHHHH----HHHHTTCCCSEEESCBCTTCHHHH-HHHHHH------CCSSE-------------- T ss_pred ----------CHHHHHHHHH----HHHHCCCCCEEECCCCCCCCHHHH-HHHHHH------CCCCC-------------- T ss_conf ----------9999999999----998358782674589982126889-999862------57752-------------- Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH Q ss_conf 16753102446777744315721147889888876640898799553114589999999624998999934618999999 Q gi|255764463|r 215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKA 294 (337) Q Consensus 215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~ 294 (337) . .+-..+ ++.. .++.. ...++|++.+|.|++-.=-|..+.+..++|+..=..+.+. ++.. T Consensus 247 ----------i-a~ee~~--~~~~----~~~li--~~~a~di~~~~GGit~~~~ia~~A~~~gi~~~~g~~~~~a-~~hl 306 (389) T 2oz8_A 247 ----------I-NSGEYL--DLQG----KRLLL--EAHAADILNVHGQVTDVMRIGWLAAELGIPISIGNTFLEA-GVHM 306 (389) T ss_dssp ----------E-EECTTC--CHHH----HHHHH--HTTCCSEEEECSCHHHHHHHHHHHHHHTCCEEECCCGGGT-THHH T ss_pred ----------C-CCCCEE--CHHH----HHHHH--HCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHH-HHHH T ss_conf ----------3-565143--4476----89999--8699758887665546999999999849958567089999-9999 Q ss_pred HHH Q ss_conf 998 Q gi|255764463|r 295 ASL 297 (337) Q Consensus 295 a~~ 297 (337) ++. T Consensus 307 aaa 309 (389) T 2oz8_A 307 AVA 309 (389) T ss_dssp HHH T ss_pred HHH T ss_conf 997 No 154 >1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 Probab=38.68 E-value=20 Score=15.88 Aligned_cols=140 Identities=13% Similarity=0.185 Sum_probs=69.3 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337) +|+..+-+.++-+-+ .|+ -.|=..|+.+..++ +.+-|...|+. ++.|.+.=-|=++- + T Consensus 50 l~l~~leD~Le~~g~----------yID-~vKfg~GTs~l~~~--L~eKI~l~~~~--~V~v~~GGTlfE~a-------~ 107 (276) T 1u83_A 50 YPLQFFKDAIAGASD----------YID-FVKFGWGTSLLTKD--LEEKISTLKEH--DITFFFGGTLFEKY-------V 107 (276) T ss_dssp CCHHHHHHHHHHHGG----------GCC-EEEECTTGGGGCTT--HHHHHHHHHHT--TCEEEECHHHHHHH-------H T ss_pred CCHHHHHHHHHHHHH----------HEE-EEEECCCEECCCHH--HHHHHHHHHHC--CCEEECCCHHHHHH-------H T ss_conf 998999999997454----------525-88854853312689--99999999986--99697896899999-------9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC----CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH Q ss_conf 36544628999999999999996289735246676----77999999999877885773003366643543010167531 Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEMM----DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS 220 (337) Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM----DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~ 220 (337) ..|+ ++.+.+- -.+-|.|+|-=||=. +.+-..+.+.+.+ +|. ++ T Consensus 108 ~q~~------~d~yl~~---~k~lGf~~IEISdGsi~i~~~~~~~~I~~~~~-~~~---V~------------------- 155 (276) T 1u83_A 108 SQKK------VNEFHRY---CTYFGCEYIEISNGTLPMTNKEKAAYIADFSD-EFL---VL------------------- 155 (276) T ss_dssp HTTC------HHHHHHH---HHHTTCSEEEECCSSSCCCHHHHHHHHHHHTT-TSE---EE------------------- T ss_pred HHCC------HHHHHHH---HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH-CCE---EC------------------- T ss_conf 8188------9999999---99859988997898012898999999999985-493---45------------------- Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 02446777744315721147889888876640898799553 Q gi|255764463|r 221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP 261 (337) Q Consensus 221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP 261 (337) | .. |.|....-.+.+..+-+..+..|.+-||++|||.- T Consensus 156 s--Ev-G~K~~~~~~~~~~~~~i~~~~~~LeAGA~~VIiEa 193 (276) T 1u83_A 156 S--EV-GSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276) T ss_dssp E--EC-SCCC------CCSTHHHHHHHHHHHHTEEEEEEC- T ss_pred C--CC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 4--35-77676435778999999999999977984899961 No 155 >1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Probab=37.92 E-value=20 Score=15.80 Aligned_cols=49 Identities=6% Similarity=0.176 Sum_probs=25.1 Q ss_pred CCEEEECCCCCHHHCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC Q ss_conf 447986133271001143---100136544628999999999999996289735246 Q gi|255764463|r 123 NIGIITDVALDPFTIHGH---DGILCDGEIVNDETIELISHAAVIQADAGADIIAPS 176 (337) Q Consensus 123 dl~vi~DVcLc~YT~hGH---cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS 176 (337) ||+|+-..||++|+..-+ ...+. ......+++.|++.|.. -|..+++.+ T Consensus 47 dlvvfPE~~ltgy~~~~~~~~~~~~~--~~~~~~~~~~l~~~A~~---~~~~ii~G~ 98 (291) T 1f89_A 47 KLVVLPECFNSPYSTDQFRKYSEVIN--PKEPSTSVQFLSNLANK---FKIILVGGT 98 (291) T ss_dssp EEEECCTTTTSCSCHHHHHHHTTBCC--SSSCCHHHHHHHHHHHH---SSCEEECCC T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHH---HCEEEEEEE T ss_conf 89987786557887356788898733--24897999999999998---092999801 No 156 >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Probab=37.77 E-value=21 Score=15.79 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=47.6 Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC---CC-----------CC---CCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 379999999997301447986133271001143100---13-----------65---44628999999999999996289 Q gi|255764463|r 108 NLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI---LC-----------DG---EIVNDETIELISHAAVIQADAGA 170 (337) Q Consensus 108 glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi---~~-----------~g---~IdND~Tl~~L~k~Al~~A~AGa 170 (337) ..+..+++.+|+..++.-++ --|-.|+|--++.-- .. +- .-.-|...+.+.+-+..|.+||| T Consensus 129 ~~~~~~i~~~~~~~~~~pli-gf~ggP~Tla~yl~~g~~~~~~~~~~~~~~~~pe~~~~ll~~~t~~~i~~~~~qi~aGa 207 (359) T 2inf_A 129 PYVLETIKLLVNEQLNVPLI-GFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGA 207 (359) T ss_dssp HHHHHHHHHHHHHTCSSCEE-EEEECHHHHHHHHHHCSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999986224666426-43176898999986174302268888787658578999999999999999999997079 Q ss_pred CEEECCCCCCCH Q ss_conf 735246676779 Q gi|255764463|r 171 DIIAPSEMMDGR 182 (337) Q Consensus 171 DivAPSdMMDGr 182 (337) |+|..-|..=|. T Consensus 208 d~i~ifDs~a~~ 219 (359) T 2inf_A 208 KAIQIFDSWVGA 219 (359) T ss_dssp SEEEEECTTGGG T ss_pred CEEEEECCHHHH T ss_conf 889970764565 No 157 >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Probab=37.68 E-value=13 Score=17.10 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=23.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH Q ss_conf 211478898888766408987995531145899 Q gi|255764463|r 236 PANVQEAIREASIDIQESADMLLVKPGLPYLDV 268 (337) Q Consensus 236 ~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDi 268 (337) ..++.||+..+....++| |+|+++||.++.|. T Consensus 399 ~~d~~eAi~~a~~~~~~g-DiVLls~a~aSfD~ 430 (451) T 3lk7_A 399 ALDVRDAVHKAYEVAQQG-DVILLSPANASWDM 430 (451) T ss_dssp CSSHHHHHHHHHHHCCTT-CEEEECCSSCSTTT T ss_pred CCCHHHHHHHHHHHCCCC-CEEEECCCCCCHHH T ss_conf 499999999999858997-99997795504212 No 158 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A* Probab=37.46 E-value=21 Score=15.75 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=77.7 Q ss_pred HHHHHHHHHCC--CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC-----CCC------- Q ss_conf 99999973014--4798613327100114310013654462899999999999999628973524-----667------- Q gi|255764463|r 113 GICAIKKNIPN--IGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP-----SEM------- 178 (337) Q Consensus 113 AIr~IK~~fpd--l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP-----SdM------- 178 (337) .+++|++.+|+ ++-+.|.+-.||-+-- -++-.....++.-.+-+.|+|.|.= |-. T Consensus 15 v~~~l~~~~p~~~~iy~~D~~~~PYG~ks-----------~e~i~~~~~~~~~~L~~~~~~~IviaCNTa~a~~~~~l~~ 83 (254) T 1b73_A 15 VLKAIRNRYRKVDIVYLGDTARVPYGIRS-----------KDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKK 83 (254) T ss_dssp HHHHHHHHSTTCEEEEEECTTTCCCTTSC-----------HHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHH T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCC-----------HHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH T ss_conf 99999997899988999468889999899-----------9999999999999999769999999378578999999998 Q ss_pred -----CCCH-HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHC------CCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf -----6779-999999998778857730033666435430101675310------2446777744315721147889888 Q gi|255764463|r 179 -----MDGR-VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIST------RDLLKGDKKTYYLDPANVQEAIREA 246 (337) Q Consensus 179 -----MDGr-V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S------~p~~~gdr~sYQmd~~n~~eA~~e~ 246 (337) +=|- .-+++.++...+...+++|+-.+-..|.+|--.-...+. .|.+..-...-+.+.....+.+.+. T Consensus 84 ~~~ipvi~ii~~~~~~a~~~~~~~~VgvLAT~~Ti~s~~Y~~~l~~~g~~v~~~~~~~lv~~ie~~~~~~~~~~~~~~~~ 163 (254) T 1b73_A 84 EINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHY 163 (254) T ss_dssp HSSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHH T ss_pred HCCCCEEECCCHHHHHHHHHCCCCEEEEEEEHHHHHCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 63798760562879999972678759999606666567999999855995996087789999983654675789999999 Q ss_pred HHHHHCCCCEEEE Q ss_conf 8766408987995 Q gi|255764463|r 247 SIDIQESADMLLV 259 (337) Q Consensus 247 ~~D~~EGAD~lMV 259 (337) .....+++|.+.. T Consensus 164 l~~l~~~~d~iIL 176 (254) T 1b73_A 164 LKEFKGKIDTLIL 176 (254) T ss_dssp STTTTTTCSEEEE T ss_pred HHHHHCCCCEEEE T ss_conf 9864314898999 No 159 >1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Probab=36.98 E-value=21 Score=15.70 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=11.1 Q ss_pred HHHHHHHHHHCCCEEEECCCCC Q ss_conf 9999999730144798613327 Q gi|255764463|r 112 EGICAIKKNIPNIGIITDVALD 133 (337) Q Consensus 112 rAIr~IK~~fpdl~vi~DVcLc 133 (337) .|++.+++.-||+ |++|+.+- T Consensus 49 eal~~~~~~~pDl-illDi~MP 69 (205) T 1s8n_A 49 EAVELAELHKPDL-VIMDVKMP 69 (205) T ss_dssp HHHHHHHHHCCSE-EEEESSCS T ss_pred HHHHHHHHCCCCE-EEEECCCC T ss_conf 9999998379999-99964045 No 160 >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Probab=36.96 E-value=21 Score=15.70 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHCCCCEEEECC-----------CHHHHHHHHHHHHHCCCCEEEE Q ss_conf 889888876640898799553-----------1145899999996249989999 Q gi|255764463|r 241 EAIREASIDIQESADMLLVKP-----------GLPYLDVCFRIKEKFGLPTFAY 283 (337) Q Consensus 241 eA~~e~~~D~~EGAD~lMVKP-----------a~~yLDii~~~k~~~~~P~~aY 283 (337) |++.-+.+-.+.|.|++-|-- -..++.....+|+.+.+||.+- T Consensus 230 ~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~ 283 (340) T 3gr7_A 230 DYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAV 283 (340) T ss_dssp GHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 999999999864755364322401266567788631379999999749868997 No 161 >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} Probab=36.51 E-value=21 Score=15.66 Aligned_cols=142 Identities=16% Similarity=0.078 Sum_probs=81.2 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEE---EEEECCCCCCCCCCCC-CCCCCCCH--HHHHHH Q ss_conf 11666758988110488878632889999999999998889367---6330256334554454-21576537--999999 Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAI---AIFPNIPMDLRNNTGS-HIIDPDNL--INEGIC 115 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av---~LFp~I~~~~Kd~~Gs-eA~n~dgl--v~rAIr 115 (337) .|+||.-|.+.-+ +.+.+++.++++.++|.+.+ +-+|. ..+...++ ..+...|. ..+..+ T Consensus 40 ~pl~IIAGpcs~e-----------~~e~~le~A~~lk~~g~~~~r~~~~Kp~---t~~~~~~~~~~~~~~g~~~~l~~l~ 105 (298) T 3fs2_A 40 APLALIAGPCQME-----------TRDHAFEMAGRLKEMTDKLGIGLVYKSS---FDKANRTSLKAARGIGLEKALEVFS 105 (298) T ss_dssp SCCEEEEECSBCC-----------CHHHHHHHHHHHHHHHHHHTCCEEEECB---CCCCC---------CCHHHHHHHHH T ss_pred CEEEEEEECCCCC-----------CHHHHHHHHHHHHHHHHHHCCCEEEECC---CCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 8069997068557-----------9999999999999988884858299178---7776667787757688899999999 Q ss_pred HHHHHHCCCEEEECC---CCCHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC---CCHHHHHH Q ss_conf 999730144798613---327100114310013--6544628999999999999996289735246676---77999999 Q gi|255764463|r 116 AIKKNIPNIGIITDV---ALDPFTIHGHDGILC--DGEIVNDETIELISHAAVIQADAGADIIAPSEMM---DGRVQEIR 187 (337) Q Consensus 116 ~IK~~fpdl~vi~DV---cLc~YT~hGHcGi~~--~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM---DGrV~aIR 187 (337) .+|+++. +.++|++ +...+...+=+ ++. -..+.|-.-++.+++ .|.-|+--..|. +--+.++. T Consensus 106 ~~~~e~g-l~~~Te~~d~~~~~~~~~~vd-~~kIga~~~~n~~Ll~~~a~-------t~kPV~lk~G~~~s~~e~~~Ave 176 (298) T 3fs2_A 106 DLKKEYG-FPVLTDIHTEEQCAAVAPVVD-VLQIPAFLCRQTDLLIAAAR-------TGRVVNVKKGQFLAPWDMKNVLA 176 (298) T ss_dssp HHHHHHC-CCEEEECCSHHHHHHHTTTCS-EEEECGGGTTCHHHHHHHHH-------TTSEEEEECCTTCCGGGHHHHHH T ss_pred HHHHHHC-CCEEEECCCHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHH-------CCCCEEECCCCCCCHHHHHHHHH T ss_conf 9999849-943343366888987502355-14533311468799999987-------19956622678899899987889 Q ss_pred HHHHHCCCCCCCEECHHHHH Q ss_conf 99987788577300336664 Q gi|255764463|r 188 KKLDSHGHINVGIMPYVAKF 207 (337) Q Consensus 188 ~~Ld~~g~~~~~ImsYsaKf 207 (337) . +.+.|..++.++-..+.| T Consensus 177 ~-i~~~Gn~~v~l~~rg~~~ 195 (298) T 3fs2_A 177 K-ITESGNPNVLATERGVSF 195 (298) T ss_dssp H-HHTTTCCCEEEEECCEEC T ss_pred H-HHHCCCCEEEEECCCCCC T ss_conf 9-984798649982885234 No 162 >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Probab=36.39 E-value=22 Score=15.64 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=37.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC---C-----------CCC-CH---HHHHHHHHHHHHCCCEEEE Q ss_conf 9999999999998889367633025633455445421---5-----------765-37---9999999997301447986 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHI---I-----------DPD-NL---INEGICAIKKNIPNIGIIT 128 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA---~-----------n~d-gl---v~rAIr~IK~~fpdl~vi~ 128 (337) ...+.+.+..+.+|||++|-|=|..+.......|-.. | +|. |- ..+.|++++++ .|-||- T Consensus 20 ~~gi~~kLdylk~LGv~~I~L~Pi~~~~~~~~~GY~~~~~y~~~~~~~~~~vd~~~Gt~~df~~LV~~~H~~--GI~Vil 97 (483) T 3bh4_A 20 WKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSR--NVQVYG 97 (483) T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSSCCHHHHHHHHHHHHHT--TCEEEE T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEE T ss_conf 999999789999749988996957118888988977556766543445676588899999999999999988--998999 Q ss_pred CCCC Q ss_conf 1332 Q gi|255764463|r 129 DVAL 132 (337) Q Consensus 129 DVcL 132 (337) ||-+ T Consensus 98 DvV~ 101 (483) T 3bh4_A 98 DVVL 101 (483) T ss_dssp EECC T ss_pred EECC T ss_conf 9786 No 163 >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Probab=35.99 E-value=22 Score=15.60 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=45.8 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCCCCCCCC--HHHHHHHHHHHHH-CCCEEEECCCCCHHHC Q ss_conf 28899999999999988893676330256334--5544542157653--7999999999730-1447986133271001 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDL--RNNTGSHIIDPDN--LINEGICAIKKNI-PNIGIITDVALDPFTI 137 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~--Kd~~GseA~n~dg--lv~rAIr~IK~~f-pdl~vi~DVcLc~YT~ 137 (337) ..|.+.+.++++++.+.|.+++-+-.+.+..- ++.. ...+.+.+ --.+.++++++.+ |++.++.| |-+.||. T Consensus 147 ~~s~e~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~-~~~~~~~d~~~di~~v~avr~~~G~~~~l~vD-aN~~~~~ 223 (410) T 2qq6_A 147 EGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFW-NGAISPREHEAMVARVAAVREAVGPEVEVAID-MHGRFDI 223 (410) T ss_dssp STHHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSS-SCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEE-CTTCCCH T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCCCH T ss_conf 58999999999999977998899713676775333333-56778365899999999999973985426426-6667898 No 164 >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A Probab=35.55 E-value=20 Score=15.88 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=29.1 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 46777744315721147889888876640898799553 Q gi|255764463|r 224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP 261 (337) Q Consensus 224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP 261 (337) .+.-||..|..|+-+.---+-|+.+-|.|||.|+=-|- T Consensus 116 ~~HI~K~~F~vPFVCGarnLGEALRRI~EGAaMIRTKG 153 (305) T 2nv1_A 116 EFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKG 153 (305) T ss_dssp SCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECC T ss_pred CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 10165102766633378972899998860032312679 No 165 >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} Probab=35.52 E-value=22 Score=15.55 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=40.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHH Q ss_conf 8786328899999999999988893676330256334554454215765379999999997301-44798613327100 Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFT 136 (337) Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT 136 (337) +++....+.+.+++++++..+.|.+.+.+..+..+-.+| .+.++++++.++ +..++.|.. +.|| T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~~~K~k~g~~~~~~d-------------i~~v~~vr~~~g~~~~l~vDaN-~~~~ 206 (391) T 2qgy_A 142 CWSDLKKDTNDYLRQIEKFYGKKYGGIKIYPMLDSLSIS-------------IQFVEKVREIVGDELPLMLDLA-VPED 206 (391) T ss_dssp CCCSSCCCHHHHHHHHHHHHHTTCSCEEECCCCSSHHHH-------------HHHHHHHHHHHCSSSCEEEECC-CCSC T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-------------HHHHHHHHHHCCCCCEEECCCC-CCCC T ss_conf 145555678999999998653002541023446436789-------------9999999986376300001322-3568 No 166 >1v93_A 5,10-methylenetetrahydrofolate reductase; flavoprotein, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 1.90A {Thermus thermophilus HB8} SCOP: c.1.23.1 Probab=35.50 E-value=22 Score=15.55 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=78.1 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCC Q ss_conf 11048887863288999999999999888936763302563345544542157653799999999973014-47986133 Q gi|255764463|r 53 VESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVA 131 (337) Q Consensus 53 k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVc 131 (337) .++|+-+.... .+...+...+..+.++||++|++-.+=++...+....... ...-...-++.+++.+++ +.+- |+ T Consensus 72 ~~~i~Hltcr~-~n~~~l~~~l~~~~~~GI~niLal~GD~p~~~~~~~~~~~-~~~~a~~Li~~i~~~~~~~~~ig--va 147 (296) T 1v93_A 72 LNPLAHLTVAG-QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPE-GFRYAAELVALIRERYGDRVSVG--GA 147 (296) T ss_dssp CCEEEEECCTT-SCHHHHHHHHHHHHHTTCCEEEECCCCCCTTCSSCCCCTT-SCSSHHHHHHHHHHHHGGGSEEE--EE T ss_pred CCCEEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCC--CC T ss_conf 98502577636-9788899999999981988676614887665767788742-12679999999997256554555--55 Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHCCCCC---CCEECHHHHH Q ss_conf 2710011431001365446289999999999999962897352466767-79999999998778857---7300336664 Q gi|255764463|r 132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD-GRVQEIRKKLDSHGHIN---VGIMPYVAKF 207 (337) Q Consensus 132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD-GrV~aIR~~Ld~~g~~~---~~ImsYsaKf 207 (337) .-..||-.. -+-+..++.| ..-.+||||.+---=.-| -.....++.+..+|..- .+||.- +.+ T Consensus 148 ---~~Peghp~~-----~~~~~di~~l----~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~r~~gi~~Pii~GI~pi-~s~ 214 (296) T 1v93_A 148 ---AYPEGHPES-----ESLEADLRHF----KAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPV-TSY 214 (296) T ss_dssp ---ECTTCCTTC-----SSHHHHHHHH----HHHHHTTCSEEEEEECSSHHHHHHHHHHHHHTTCCSCEEEEECCC-CCH T ss_pred ---CCCCCCCCC-----CHHHHHHHHH----HHHHHCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEEECCH-HHH T ss_conf ---688778641-----3399999999----999981887066211662899999999999759997679862562-689 Q ss_pred HHHH Q ss_conf 3543 Q gi|255764463|r 208 NSSF 211 (337) Q Consensus 208 aS~f 211 (337) ...+ T Consensus 215 ~~l~ 218 (296) T 1v93_A 215 RQLR 218 (296) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 167 >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle; 2.00A {Geobacillus SP} Probab=35.16 E-value=23 Score=15.51 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=60.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH--------HHHHHHHHHHHH-C-CCEEEECCCCCH- Q ss_conf 89999999999998889367633025633455445421576537--------999999999730-1-447986133271- Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL--------INEGICAIKKNI-P-NIGIITDVALDP- 134 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl--------v~rAIr~IK~~f-p-dl~vi~DVcLc~- 134 (337) .+..+.+.+..+.++||++|-|-|+.+... +..-|++-++ -....+.+-++. - .|.||.||.+-. T Consensus 29 d~~gl~~~LdyLk~lGv~~I~l~Pi~~~~~----~~~GY~~~d~~~vd~~~Gt~~dfk~lv~~aH~~Gi~VilD~V~NH~ 104 (555) T 2ze0_A 29 DLRGIIEKLDYLVELGVDIVWICPIYRSPN----ADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHT 104 (555) T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCC----TTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEEECSBC T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 999999833899975998799696736999----9989685466874712499999999999999889989999896626 Q ss_pred -----------------HHCCC-----CC---------------------------CCC----CCCCCCHHHHHHHHHHH Q ss_conf -----------------00114-----31---------------------------001----36544628999999999 Q gi|255764463|r 135 -----------------FTIHG-----HD---------------------------GIL----CDGEIVNDETIELISHA 161 (337) Q Consensus 135 -----------------YT~hG-----Hc---------------------------Gi~----~~g~IdND~Tl~~L~k~ 161 (337) |.++. .+ +.. .+-.-.|.++.+.+.+. T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 184 (555) T 2ze0_A 105 SDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEM 184 (555) T ss_dssp CTTSHHHHHHHHCSSSTTGGGBCEECCBTTBCSSCEECTTSSBSEEEETTTTEEEECSSCTTCCBBCTTCHHHHHHHHHH T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 58760365542057887544310157767889986534479974423566650342246788862034687999999999 Q ss_pred HHHHHHCCCCEEE Q ss_conf 9999962897352 Q gi|255764463|r 162 AVIQADAGADIIA 174 (337) Q Consensus 162 Al~~A~AGaDivA 174 (337) ..-..+-|+|.+- T Consensus 185 ~~~~~~~gvdg~R 197 (555) T 2ze0_A 185 VNWWLDKGIDGFR 197 (555) T ss_dssp HHHHHHHTCCEEE T ss_pred HHHHHHCCCCEEE T ss_conf 9999973997465 No 168 >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Probab=35.07 E-value=23 Score=15.51 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=53.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337) ..+++..++.++++.. +|-.+- . +.+-. .+ .| ...|+.+|+.+|+..++.|.=+.. T Consensus 15 ~~~~~~~~~~~~~~~~-~vd~ik-i-g~~l~-~~---------~G--~~~i~~l~~~~~~~~i~~D~K~~D--------- 70 (218) T 3jr2_A 15 QTNLTDAVAVASNVAS-YVDVIE-V-GTILA-FA---------EG--MKAVSTLRHNHPNHILVCDMKTTD--------- 70 (218) T ss_dssp CSSHHHHHHHHHHHGG-GCSEEE-E-CHHHH-HH---------HT--THHHHHHHHHCTTSEEEEEEEECS--------- T ss_pred CCCHHHHHHHHHHCCC-CCCEEE-E-EEECH-HH---------CC--HHHHHHHHHHCCCCEEEEEEECCC--------- T ss_conf 8999999999996388-765899-4-56426-53---------59--999999997578973999985145--------- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHCCCC Q ss_conf 136544628999999999999996289735246676-77999999999877885 Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM-DGRVQEIRKKLDSHGHI 196 (337) Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM-DGrV~aIR~~Ld~~g~~ 196 (337) +..|+. -..+++|+|++--.... ...+.+..++..+.|.. T Consensus 71 -------i~~~~~------~~~~~~gad~itvh~~~~~~~l~~~~~~~~~~g~~ 111 (218) T 3jr2_A 71 -------GGAILS------RMAFEAGADWITVSAAAHIATIAACKKVADELNGE 111 (218) T ss_dssp -------CHHHHH------HHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCE T ss_pred -------CCHHHH------HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCC T ss_conf -------727788------99887449899995034547899999987641884 No 169 >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Parabacteroides distasonis} Probab=35.04 E-value=23 Score=15.50 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=56.9 Q ss_pred CCCCCCHH-----HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCC Q ss_conf 86328899-----9999999999888936763302563345544542157653799999999973014--4798613327 Q gi|255764463|r 61 DVMRMSID-----VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN--IGIITDVALD 133 (337) Q Consensus 61 Gv~R~Sid-----~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd--l~vi~DVcLc 133 (337) |+.-||+- .+...++.+.++|..+|=||+.... .+..+ -+++.......++.+|+...+ |-+.+ T Consensus 24 g~~~ys~~~~~~~dl~~~L~~~a~~G~~~VEl~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gl~i~s----- 94 (305) T 3obe_A 24 GLQTYSLGQELLQDMPNGLNRLAKAGYTDLEIFGYRED--TGKFG--DYNPKNTTFIASKDYKKMVDDAGLRISS----- 94 (305) T ss_dssp EEEGGGGTHHHHTTHHHHHHHHHHHTCCEEEECCBCTT--TCCBC--CC----CCCBCHHHHHHHHHHTTCEEEE----- T ss_pred EEEEEECCCCHHCCHHHHHHHHHHHCCCEEEECCCCCC--CCCCC--CCCCCCCCHHHHHHHHHHHHHCCCEEEE----- T ss_conf 99984537671139999999999849997998776664--21123--4474111232099999999984986854----- Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 10011431001365446289999999999999962897352 Q gi|255764463|r 134 PFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA 174 (337) Q Consensus 134 ~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337) .|...+......-.-++.++.+.+..-..++.|++++. T Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~~~ 132 (305) T 3obe_A 95 ---SHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMV 132 (305) T ss_dssp ---EBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEE T ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE T ss_conf ---26653324675788999999999999999985997577 No 170 >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Probab=34.69 E-value=23 Score=15.46 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=86.4 Q ss_pred CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--------------CCCCCCC Q ss_conf 33116667589881104888786328899999999999988893676330256334554--------------4542157 Q gi|255764463|r 40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN--------------TGSHIID 105 (337) Q Consensus 40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~--------------~GseA~n 105 (337) .||=+.|.+= .........+.-.+-....+.+.+..+.+|||++|-|-|+-+.-.-++ ...+.|+ T Consensus 269 vIYE~hvr~f-t~~~~~~~~~~~~~G~~~gi~ekLdYLk~LGvtaI~L~Pi~e~~~~d~~~~~~~~~~~~~~~~~~wGYd 347 (877) T 3faw_A 269 VIYEAHVRDF-TSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYD 347 (877) T ss_dssp EEEEECTTGG-GCCGGGTTTCSSCTTSHHHHGGGHHHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSCSCCCSCS T ss_pred EEEEEECCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 8999806705-778888875524562799999767899975998899697523576453122355554567787776656 Q ss_pred CC-----------------CHHHHHHHHHHHHHC-CCEEEECCCCCHHHCC--------------CCCCCCCC------C Q ss_conf 65-----------------379999999997301-4479861332710011--------------43100136------5 Q gi|255764463|r 106 PD-----------------NLINEGICAIKKNIP-NIGIITDVALDPFTIH--------------GHDGILCD------G 147 (337) Q Consensus 106 ~d-----------------glv~rAIr~IK~~fp-dl~vi~DVcLc~YT~h--------------GHcGi~~~------g 147 (337) +- +-+..--+.|++.-. .|.||.||-....... ..+|-..+ - T Consensus 348 ~~~y~a~~~~ygt~~~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~y~~~~~~g~~~~~~g~~~~ 427 (877) T 3faw_A 348 PQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNEDGSPRESFGGGRL 427 (877) T ss_dssp BSCSSSBCSTTCSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTHHHHTTSTTTSBCBCTTSCBCEETTEECB T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC T ss_conf 24353547533667567545699999999987455998986110256534354346788644101789985578898865 Q ss_pred CCCHHHHHHHHHHHHHHHH-HCCCCEEE---CCCCCCCHHHHHHHHHHHCC Q ss_conf 4462899999999999999-62897352---46676779999999998778 Q gi|255764463|r 148 EIVNDETIELISHAAVIQA-DAGADIIA---PSEMMDGRVQEIRKKLDSHG 194 (337) Q Consensus 148 ~IdND~Tl~~L~k~Al~~A-~AGaDivA---PSdMMDGrV~aIR~~Ld~~g 194 (337) .-.|.+..+.+...+.-.+ +-|.|-.- -..|.......++..++... T Consensus 428 n~~~~~vr~~i~d~~~~W~~e~gVDGfR~D~~~~~~~~~~~~~~~~~~~~~ 478 (877) T 3faw_A 428 GTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDHDAAAIELAYKEAKAIN 478 (877) T ss_dssp CTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHCC T ss_conf 778989999999988866877098558660422246245555567663017 No 171 >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Probab=34.65 E-value=23 Score=15.46 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=32.6 Q ss_pred CCCCCCC-HHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 4315721-14788988887664089879955---311458999999962499899993461899 Q gi|255764463|r 231 TYYLDPA-NVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKFGLPTFAYQVSGEYA 290 (337) Q Consensus 231 sYQmd~~-n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~~~P~~aYqVSGEYa 290 (337) .|+...+ |..+|+..... +--|++++- |++.=+++++.+|+...+|+...--.++-. T Consensus 25 g~~v~~a~~~~~al~~~~~---~~~dlil~D~~mp~~~G~~l~~~ir~~~~ipiI~lt~~~~~~ 85 (121) T 1zh2_A 25 GMRVFEAETLQRGLLEAAT---RKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEES 85 (121) T ss_dssp TCEEEEESSHHHHHHHHHH---HCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHH T ss_pred CCEEEEECCHHHHHHHHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHH T ss_conf 9999998889999999971---799999980999998979999999974799099997859999 No 172 >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A Probab=34.04 E-value=23 Score=15.40 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=41.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHH Q ss_conf 786328899999999999988893676330256334554454215765379999999997301-4479861332710 Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPF 135 (337) Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~Y 135 (337) ......+.+.+.++++.+.+.|.+.|-+-.+...-. ---+.|+++++.+| ++.++.|. -+.| T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Gf~~~K~Kvg~~~~~-------------~di~~v~~ir~~~g~~~~l~vDa-N~~~ 202 (371) T 2ovl_A 140 GIDLELPVADLKTQADRFLAGGFRAIKMKVGRPDLK-------------EDVDRVSALREHLGDSFPLMVDA-NMKW 202 (371) T ss_dssp CCBTTSCHHHHHHHHHHHHHTTCSCEEEECCCSSHH-------------HHHHHHHHHHHHHCTTSCEEEEC-TTCS T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-------------HHHHHHHHHHHHCCCCCEEEECC-CCCC T ss_conf 446789999999999999973887783045766479-------------99999999998758762277636-7789 No 173 >3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium PHSC20C1} PDB: 3msy_A Probab=33.64 E-value=24 Score=15.35 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=39.5 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCC Q ss_conf 86328899999999999988893676330256334554454215765379999999997301-44798613327100114 Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHG 139 (337) Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hG 139 (337) +....+.+.+.+++++..+.|.+++-+=.+-. +.+ --.+.++++++.++ ++.++.| |-+.||..- T Consensus 161 ~~~~~~~~~~~~~~~~~~~~Gf~~~Kik~~~~-~~~------------~d~~~v~~~r~~~g~~~~l~vD-an~~~~~~~ 226 (398) T 3no1_A 161 GYYGEPLGSIADEMHNYQELGLAGVKFKVGGL-SAA------------EDAARITAAREAAGDDFIICID-ANQGYKPAV 226 (398) T ss_dssp CCTTCTTCCHHHHHHHHHHTTBSEEEEECSSS-CHH------------HHHHHHHHHHHHHCSSSEEEEE-CTTCBCHHH T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CHH------------HHHHHHHHHHHHCCCCCEEECC-CCCCCCHHH T ss_conf 13689667999999997644875377525899-989------------9999999999875998489513-445568999 No 174 >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Probab=33.56 E-value=24 Score=15.35 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=47.9 Q ss_pred CCCCCCC-HHHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 4315721-1478898888766408987995---53114589999999624-99899993461899999999888978 Q gi|255764463|r 231 TYYLDPA-NVQEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 231 sYQmd~~-n~~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) .|+...+ |..||+.... +..+.-|++.+ =|++.=+++++.+++.. ..|+...-..++......|-+.|..| T Consensus 27 g~~v~~a~~~~eal~~~~-~~~~~~dlvilD~~mp~~~G~~l~~~~~~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~d 102 (143) T 3jte_A 27 GNEVLTASSSTEGLRIFT-ENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFE 102 (143) T ss_dssp TCEEEEESSHHHHHHHHH-HTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSE T ss_pred CCEEEEECCHHHHHHHHH-HCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE T ss_conf 999999788999999998-4599973999747777778899999999878999699998889999999999869989 No 175 >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicusatcc 33223} PDB: 3krz_A* Probab=33.38 E-value=24 Score=15.33 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEC-----------CCHHHHHHHHHHHHHCCCCEEE Q ss_conf 788988887664089879955-----------3114589999999624998999 Q gi|255764463|r 240 QEAIREASIDIQESADMLLVK-----------PGLPYLDVCFRIKEKFGLPTFA 282 (337) Q Consensus 240 ~eA~~e~~~D~~EGAD~lMVK-----------Pa~~yLDii~~~k~~~~~P~~a 282 (337) -+...+...-++++.|.+.+- +....++....+|+.+++||.+ T Consensus 229 ~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~ 282 (343) T 3kru_A 229 IDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSA 282 (343) T ss_dssp HHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 799999999988634430220255545555777532167999999974988899 No 176 >2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus} Probab=33.26 E-value=24 Score=15.31 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=35.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH Q ss_conf 999999999999888936763302563345544542157653799999999973014479861332710 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF 135 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y 135 (337) =.++...++.+.+.|.+.|.+.-.+.. +..|+.+.++||++-|+| .|.|+- T Consensus 134 G~s~~~ai~~L~~~g~~~I~~v~~iaa-----------------~~Gl~~l~~~~P~v~I~t-a~iD~~ 184 (208) T 2e55_A 134 GGTLEVALREILKHSPLKVKSVHAIAA-----------------PEGLKRIEEKFKEVEIFV-GNVDER 184 (208) T ss_dssp SHHHHHHHHHHHTTCBSEEEEEEEEEC-----------------HHHHHHHHHHCTTSEEEE-EEECSE T ss_pred CCHHHHHHHHHHHCCCCEEEEEEEEEC-----------------HHHHHHHHHHCCCCEEEE-EEECCC T ss_conf 715999999998448861799999825-----------------999999998788968999-983687 No 177 >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} Probab=33.16 E-value=24 Score=15.30 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=32.2 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC--CC---CHHHHHHHHHHHHHC-CCEEEEC Q ss_conf 88999999999999888936763302563345544542157--65---379999999997301-4479861 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIID--PD---NLINEGICAIKKNIP-NIGIITD 129 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n--~d---glv~rAIr~IK~~fp-dl~vi~D 129 (337) -+.+.+.++++++.+.|.++|-+-.+-+....+.++..... +. .--.+.++++++.++ ++.++.| T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~~~~~~~~~~~~~di~~i~air~~~g~~~~l~~D 215 (403) T 2ox4_A 145 GRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVE 215 (403) T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEE T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999999988559877985024577555433322346786567999999999999981972002555 No 178 >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} Probab=32.61 E-value=25 Score=15.24 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=25.1 Q ss_pred HHHHHHHHHHCCCCEEEEEEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 999999999888936763302-----------563345544542157653799999999973014 Q gi|255764463|r 70 AVEKIKQVADLGIPAIAIFPN-----------IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN 123 (337) Q Consensus 70 L~~eie~~~~lGI~av~LFp~-----------I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd 123 (337) -.+.+..+.+.|.-.|-|... .-+.-.|+.|-.--|---++...|++||+..|+ T Consensus 163 f~~aA~rA~~AGfDgVEIH~aHGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eii~~Ir~~~g~ 227 (361) T 3gka_A 163 FRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSA 227 (361) T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCG T ss_pred HHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999971932655401367422026648789987778997899999899999999985276 No 179 >1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; mannac-6-P epimerase, NANE, structural genomics, protein structure initiative; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Probab=32.37 E-value=25 Score=15.22 Aligned_cols=77 Identities=14% Similarity=-0.030 Sum_probs=48.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE------------CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 7211478898888766408987995------------5311458999999962499899993461899999999888978 Q gi|255764463|r 235 DPANVQEAIREASIDIQESADMLLV------------KPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 235 d~~n~~eA~~e~~~D~~EGAD~lMV------------KPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) ++.+..++. .-.+.|+|++.+ .+..+-++.+.++++.+.+|+.+ . -|.-+ T Consensus 125 ~~~t~~~a~----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~iPvia---~-----------GGI~t 186 (223) T 1y0e_A 125 DIATVEEAK----NAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA---E-----------GNVIT 186 (223) T ss_dssp ECSSHHHHH----HHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE---E-----------SSCCS T ss_pred CCCCHHHHH----HHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE---E-----------CCCCC T ss_conf 879999999----99975999699767788533568876554799999998428997898---6-----------89899 Q ss_pred HHHHHHHHHHHHHHHCCCEEEECHH----HHHHHHH Q ss_conf 8999999999997726999982018----9999998 Q gi|255764463|r 303 KNDAMMESLLAFKRAGCDGIFTYFA----MEAARIL 334 (337) Q Consensus 303 ~~~~~~E~l~~~kRAGAd~IitY~A----~~~a~~L 334 (337) .+++ .+. ..+|||.++.=-| .++++|+ T Consensus 187 ~ed~-~~a----l~~GAdgV~vGsAi~~p~~~~~~f 217 (223) T 1y0e_A 187 PDMY-KRV----MDLGVHCSVVGGAITRPKEITKRF 217 (223) T ss_dssp HHHH-HHH----HHTTCSEEEECHHHHCHHHHHHHH T ss_pred HHHH-HHH----HHCCCCEEEECHHHCCHHHHHHHH T ss_conf 9999-999----986999999842117989999999 No 180 >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Probab=32.17 E-value=25 Score=15.20 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=41.2 Q ss_pred CCCCCCCC-HHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 44315721-14788988887664089879955---3114589999999624-998999934618999999998889 Q gi|255764463|r 230 KTYYLDPA-NVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 230 ~sYQmd~~-n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~ 300 (337) ..|+...+ |..||+.-.. ++--|++.+- |+|.=+++++.+|+.. ..|+...--.++...+..|.+.|. T Consensus 37 ~g~~v~~a~~~~eAl~~l~---~~~~dlvi~D~~mP~~~G~ell~~ir~~~~~~piI~lT~~~~~~~~~~a~~~Ga 109 (153) T 3hv2_A 37 LPYTLHFARDATQALQLLA---SREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGE 109 (153) T ss_dssp SSCEEEEESSHHHHHHHHH---HSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTC T ss_pred CCCEEEEECCHHHHHHHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC T ss_conf 7999999899999999987---279999998367889988999999998689996899979999999999997799 No 181 >1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium binding, covalent dimer,; 3.00A {Sulfolobus solfataricus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1eha_A Probab=31.83 E-value=25 Score=15.16 Aligned_cols=171 Identities=19% Similarity=0.291 Sum_probs=91.1 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH------------HHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 89999999999998889367633025633455445421576537------------999999999730144798613327 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL------------INEGICAIKKNIPNIGIITDVALD 133 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl------------v~rAIr~IK~~fpdl~vi~DVcLc 133 (337) ....+.+.+..+.+|||++|-|-|+-+...+..-| |++-++ ..+-|+++.++ .|-||.||-+- T Consensus 117 d~~gi~~kLdyl~~LGv~~v~L~Pi~~~~~~~~~G---Y~~~dy~~vd~~~Gt~~dfk~lv~~~H~~--Gi~VilDvV~N 191 (558) T 1eh9_A 117 TFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWG---YDGVYLYAVQNSYGGPEGFRKLVDEAHKK--GLGVILDVVYN 191 (558) T ss_dssp SHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCS---TTCCCTTCBCSTTCCHHHHHHHHHHHHHT--TCEEEEEECCS T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCC T ss_conf 98899987589997599879962304447767778---75210121024579999999999999764--98899863345 Q ss_pred HHHCC----------------CCCCCC-CCCCCCHHHHHHHHHHHHHHHH-HCCCCEE---ECCCC----CCCHHHHHHH Q ss_conf 10011----------------431001-3654462899999999999999-6289735---24667----6779999999 Q gi|255764463|r 134 PFTIH----------------GHDGIL-CDGEIVNDETIELISHAAVIQA-DAGADII---APSEM----MDGRVQEIRK 188 (337) Q Consensus 134 ~YT~h----------------GHcGi~-~~g~IdND~Tl~~L~k~Al~~A-~AGaDiv---APSdM----MDGrV~aIR~ 188 (337) .-... ..++.. ....-.|++..+.+.+...-.. +-|+|-. +...| ...-...+++ T Consensus 192 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~i~d~~~~Wl~e~gVDGfR~D~~~~l~~~~~~~~~~~~~~ 271 (558) T 1eh9_A 192 HVGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDTSPKHILEEIAD 271 (558) T ss_dssp CCCSSSCCHHHHSCCSCSSCCCSSSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEEETTGGGCCCCSSSCHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHH T ss_conf 55578853113698533356776567668887689999999999999999861897799834676134430565899899 Q ss_pred HHHHCCCC--------CCCEECHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 99877885--------77300336----664354301016753102446777744315721147889 Q gi|255764463|r 189 KLDSHGHI--------NVGIMPYV----AKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAI 243 (337) Q Consensus 189 ~Ld~~g~~--------~~~ImsYs----aKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~ 243 (337) .+.+.+.. +..+.... ..+.+.+...||+++... +.+++.....+..+...-. T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 336 (558) T 1eh9_A 272 VVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAY--LTGERQGYYTDFGNLDDIV 336 (558) T ss_dssp HHHHTTCCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHHHHHHH--HSCCCSGGGGGCCSHHHHH T ss_pred HHHHCCCCCEECCCCCCCCEECCCCCCCCEEEEECCCCHHHHHHHH--HCCCCCCCHHCCHHHHHHH T ss_conf 9873384000001147763442232477223322053078899998--5454222010101157888 No 182 >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Probab=31.77 E-value=18 Score=16.10 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=34.0 Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 89881104888786328899999999999988893676330256334554454215765379999999997301447986 Q gi|255764463|r 49 GEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIIT 128 (337) Q Consensus 49 g~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~ 128 (337) |...++.++.--+.+.-+.+.+.+++++..+.|.+.+-+=.+.+.. . -..+..+.+++.+||+.++. T Consensus 129 Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiK~g~~~~-~------------~~~~~~~~~~~~g~d~~l~v 195 (371) T 2ps2_A 129 GGRTNTRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISGEPV-T------------DAKRITAALANQQPDEFFIV 195 (371) T ss_dssp TCCCSSCEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCSCHH-H------------HHHHHHHHTTTCCTTCEEEE T ss_pred CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH-H------------HHHHHHHHHHHHCCCCEEEE T ss_conf 7764432210112368999999999999875167520135788746-8------------89998999998488852620 Q ss_pred C Q ss_conf 1 Q gi|255764463|r 129 D 129 (337) Q Consensus 129 D 129 (337) | T Consensus 196 D 196 (371) T 2ps2_A 196 D 196 (371) T ss_dssp E T ss_pred C T ss_conf 4 No 183 >2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli} Probab=31.57 E-value=26 Score=15.13 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCH Q ss_conf 9999999999988893676330256334554454215765379999999997301447986133271 Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 (337) Q Consensus 68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~ 134 (337) .++...++.+.+.|++.|.+.-.+.. +..|+.+.+.||++-|+|= |+|+ T Consensus 137 ~s~~~ai~~L~~~G~~~I~iv~~ias-----------------~~Gi~~l~~~~P~v~I~ta-~iD~ 185 (208) T 2ehj_A 137 GSVIATIDLLKKAGCSSIKVLVLVAA-----------------PEGIAALEKAHPDVELYTA-SIDQ 185 (208) T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEEC-----------------HHHHHHHHHHCTTSEEEES-CBCS T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEC-----------------HHHHHHHHHHCCCCEEEEE-EECC T ss_conf 77999999998579982899999855-----------------8999999987949789999-8668 No 184 >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* Probab=31.40 E-value=26 Score=15.11 Aligned_cols=170 Identities=14% Similarity=0.097 Sum_probs=88.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH Q ss_conf 999999999999888936763302-----------563345544542157653799999999973014479861332710 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPN-----------IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF 135 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~-----------I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y 135 (337) ++...+.++.+.+.|.-.|-|-.. .-++..|+.|-.--|.--++...|++||+..|+-.|+.= +-+. T Consensus 166 i~~f~~AA~rA~~AGfDgVEIH~aHGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aIr~~vg~~~i~~r--~~~~ 243 (376) T 1icp_A 166 VNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIR--ISPF 243 (376) T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEE--ECTT T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE--ECCH T ss_conf 99999999999981999699711303289871376579986888887899879899999999986088655788--5151 Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH Q ss_conf 01143100136544628999999999999996289735246676779999999998778857730033666435430101 Q gi|255764463|r 136 TIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY 215 (337) Q Consensus 136 T~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF 215 (337) ....+. + ...+....+ ......+..|.+.+--|......- +.....+ .+..++ T Consensus 244 ~~~~~g-----g-~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~--------~~~~~i 296 (376) T 1icp_A 244 AHYNEA-----G-DTNPTALGL--YMVESLNKYDLAYCHVVEPRMKTA-----------WEKIECT--------ESLVPM 296 (376) T ss_dssp CCTTTC-----C-CSCHHHHHH--HHHHHHGGGCCSEEEEECCSCCC-----------------CC--------CCSHHH T ss_pred HHCCCC-----C-CCCHHHHHH--HHHHHHHHCCEEEEEEECCCCCCC-----------CCCCCCH--------HHHHHH T ss_conf 012478-----8-852789999--999986410234566634765445-----------5555447--------889999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEE-CCCHHHHHHHHHHHHHCC Q ss_conf 67531024467777443157211478898888766408-987995-531145899999996249 Q gi|255764463|r 216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES-ADMLLV-KPGLPYLDVCFRIKEKFG 277 (337) Q Consensus 216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG-AD~lMV-KPa~~yLDii~~~k~~~~ 277 (337) |.+++......|. +++. + ++.-+.|| ||++++ .|.+.-=|.++++++... T Consensus 297 ~~~~~~pvi~~G~-----~~~~---~----ae~~l~~g~aDlV~~gR~~laDP~~~~K~~~g~~ 348 (376) T 1icp_A 297 RKAYKGTFIVAGG-----YDRE---D----GNRALIEDRADLVAYGRLFISNPDLPKRFELNAP 348 (376) T ss_dssp HHHCCSCEEEESS-----CCHH---H----HHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCC T ss_pred HHHCCCCEEEECC-----CCHH---H----HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCC T ss_conf 9863787799789-----8999---9----9999987997753753999979309999974999 No 185 >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, lyase; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* Probab=31.29 E-value=26 Score=15.10 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=43.6 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH Q ss_conf 4888786328899999999999988893676330256334554454215765379999999997301-447986133271 Q gi|255764463|r 56 INSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP 134 (337) Q Consensus 56 I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~ 134 (337) ..+.-+....+.|.+.++++...+.|.+.+-+-.+.. ..++ -.+.++.+++.++ ++.++.|. -+. T Consensus 165 ~~~~~~~~~~~~d~~~~~~~~~~~~Gf~~~K~k~~~~-~~~~------------d~~~v~~ir~~~G~~~~l~vDa-N~~ 230 (398) T 2pp0_A 165 YNTSGGFLHTPLDQVLKNVVISRENGIGGIKLKVGQP-NCAE------------DIRRLTAVREALGDEFPLMVDA-NQQ 230 (398) T ss_dssp EECTTSCTTSCHHHHHHHHHHHHHTTCSCEEEECCCS-CHHH------------HHHHHHHHHHHHCSSSCEEEEC-TTC T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC-CHHH------------HHHHHHHHHHHHCCCCEEEEEC-CCC T ss_conf 3531566789899998888999974987000145789-9899------------9999999999849997499745-555 Q ss_pred HH Q ss_conf 00 Q gi|255764463|r 135 FT 136 (337) Q Consensus 135 YT 136 (337) || T Consensus 231 ~~ 232 (398) T 2pp0_A 231 WD 232 (398) T ss_dssp SC T ss_pred CC T ss_conf 49 No 186 >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Probab=31.27 E-value=26 Score=15.10 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=74.3 Q ss_pred CCCCEEEE---CCCCCEEECCCCCCCCCC--CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---CCCC--------C Q ss_conf 33116667---589881104888786328--899999999999988893676330256334554---4542--------1 Q gi|255764463|r 40 LILPIFLT---SGEKTVESINSMPDVMRM--SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN---TGSH--------I 103 (337) Q Consensus 40 LI~PiFV~---eg~~~k~~I~SMPGv~R~--Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~---~Gse--------A 103 (337) .||=|||. +|.....+-........+ .+..+.+.+..+.++||++|-|-|..+....+. .+.+ + T Consensus 10 ~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~~~~~~~~~gY~~~dy~~ 89 (478) T 2guy_A 10 SIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYS 89 (478) T ss_dssp CEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEE T ss_pred CEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 69999851212799987767776667647838999998469998789988995997678765577888888837656777 Q ss_pred CCCC-CHHHHHHHHHHHHH-C-CCEEEECCCCCHHHC---------------------CCCCCC-------------CC- Q ss_conf 5765-37999999999730-1-447986133271001---------------------143100-------------13- Q gi|255764463|r 104 IDPD-NLINEGICAIKKNI-P-NIGIITDVALDPFTI---------------------HGHDGI-------------LC- 145 (337) Q Consensus 104 ~n~d-glv~rAIr~IK~~f-p-dl~vi~DVcLc~YT~---------------------hGHcGi-------------~~- 145 (337) .++. |=. .-.+.+-++. - .|.||.|+-+-.-.. |..+.+ .. T Consensus 90 id~~~Gt~-~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (478) T 2guy_A 90 LNENYGTA-DDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGD 168 (478) T ss_dssp ECTTSCCH-HHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHHHHHSBEEC T ss_pred CCCCCCCH-HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 48354999-99999999986668889997045666655566433221124567544468754434556765333321467 Q ss_pred ------CCCCCHHHHHHHHHHHHHHHH-HCCCCEEE---CCCCCCCHHHHHHHHHH Q ss_conf ------654462899999999999999-62897352---46676779999999998 Q gi|255764463|r 146 ------DGEIVNDETIELISHAAVIQA-DAGADIIA---PSEMMDGRVQEIRKKLD 191 (337) Q Consensus 146 ------~g~IdND~Tl~~L~k~Al~~A-~AGaDivA---PSdMMDGrV~aIR~~Ld 191 (337) +=.-.|.+..+.+.+...... +.|+|.+- ...|-..-...+++..+ T Consensus 169 ~~~~~pdln~~~~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~ 224 (478) T 2guy_A 169 NTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAG 224 (478) T ss_dssp SSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHT T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC T ss_conf 76767520238789999999888742221344147971102276889987553564 No 187 >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} Probab=30.86 E-value=26 Score=15.05 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=40.8 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCEEEECCC Q ss_conf 2889999999999998889367633025633455445421576537-9999999997301447986133 Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL-INEGICAIKKNIPNIGIITDVA 131 (337) Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl-v~rAIr~IK~~fpdl~vi~DVc 131 (337) -.|.+.+.+.++.+.++|++ ++|+++- +..+.- .+|.--|+ =.+-++.+|++| .+-++|||. T Consensus 152 iEs~e~~~~~A~~lk~~~~~--~~r~~~f-k~RTs~--~sf~G~G~egL~il~~i~~~~-Glpv~Tev~ 214 (385) T 3nvt_A 152 VESYEQVAAVAESIKAKGLK--LIRGGAF-KPRTSP--YDFQGLGLEGLKILKRVSDEY-GLGVISEIV 214 (385) T ss_dssp CCCHHHHHHHHHHHHHTTCC--EEECBSS-CCCSST--TSCCCCTHHHHHHHHHHHHHH-TCEEEEECC T ss_pred CCCHHHHHHHHHHHHHCCCC--EEECCEE-CCCCCC--CCCCCCCHHHHHHHHHHHHHC-CCCEEEEEH T ss_conf 38999999999999866971--8974414-689998--675786589999999999864-997466311 No 188 >3n4f_A Mandelate racemase/muconate lactonizing protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MSE; 1.88A {Geobacillus SP} Probab=30.78 E-value=24 Score=15.29 Aligned_cols=68 Identities=13% Similarity=-0.015 Sum_probs=41.1 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCC Q ss_conf 889999999999998889367633025633455445421576537999999999730-14479861332710011 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIH 138 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~h 138 (337) -+++.+.+++++..+.|.++|-+=.+.+.. ... ..+.... --..++++++.+ |++.++.| |-+.||.. T Consensus 147 ~~~~~~~~~a~~~~~~Gf~~~KiKvG~~~~-~~~-~~~~~~~---Di~~v~avR~~~G~~~~l~vD-aN~~wt~~ 215 (392) T 3n4f_A 147 AAVALMQEEAMQGYAKGQRHFKIKVGRGGR-HMP-LWEGTKR---DIAIVRGISEVAGPAGKIMID-ANNAYNLN 215 (392) T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCHHHH-TSC-HHHHHHH---HHHHHHHHHHHHCTTCCEEEE-CTTCCCHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCC-CCCCHHH---HHHHHHHHHHHHCCCEEEEEE-CCCCCCHH T ss_conf 339999999999997699778860357876-665-4238999---999999999975898189997-47553457 No 189 >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleotide and nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Probab=30.65 E-value=27 Score=15.03 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=24.7 Q ss_pred CCCHHHCCCCEEEECCCCCEE--------ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 788877331166675898811--------04888786328899999999999988893676 Q gi|255764463|r 34 RLSVSDLILPIFLTSGEKTVE--------SINSMPDVMRMSIDVAVEKIKQVADLGIPAIA 86 (337) Q Consensus 34 ~Ls~~dLI~PiFV~eg~~~k~--------~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~ 86 (337) .+....|=.||+-..=..+-+ .-..+.=+.|+..+..++++.+....++...+ T Consensus 39 ~~~~~~~~iPIisSnMDtV~~~~mA~~l~~~Gglgvlhr~~~e~~~~~v~~~k~~~l~~~~ 99 (336) T 1ypf_A 39 TLGKHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGLIASI 99 (336) T ss_dssp EETTEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGHHHHHHHHHHTTCCCEE T ss_pred EECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEEE T ss_conf 9579505787897899873889999999967982687145828888787752126648999 No 190 >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiative, PSI-2; 2.81A {Galdieria sulphuraria} Probab=30.55 E-value=27 Score=15.02 Aligned_cols=132 Identities=9% Similarity=-0.009 Sum_probs=72.1 Q ss_pred CCCCHHHHHHHHHHHCCCC-CCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 7677999999999877885-773003366643543010167531024467777443157211478898888766408987 Q gi|255764463|r 178 MMDGRVQEIRKKLDSHGHI-NVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADM 256 (337) Q Consensus 178 MMDGrV~aIR~~Ld~~g~~-~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~ 256 (337) --.+-+..+.+.+.+.+.. .+-+.|++-..... ||......|....-......++.+ .+... ...|++. T Consensus 123 ~~~~~~~~v~~~i~~~~~~~rv~~~Sf~~~~l~~----~~~~~p~~~~~~l~~~~~~~~~~~---~~~~~---~~~~~~~ 192 (258) T 2o55_A 123 KESGDHQRLLLLVEKYHMQERVDYCSFHHEALAH----LKALCPDVKITYLFNYMGQPTPLD---FVEQA---CYGDANG 192 (258) T ss_dssp TTSSHHHHHHHHHHTTTCGGGEEEEESSHHHHHH----HHHHCTTCEEEEECCTTSCCCCTT---HHHHH---HHTTCSE T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH----HHHHCCCCEEEEEECCCCCCCHHH---HHHHH---HHCCCCE T ss_conf 1027899999999971742257656699999999----998789971999960466678677---99998---8526747 Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHC Q ss_conf 99553114589999999624998999934618999999998889788999999999997726999982018999999850 Q gi|255764463|r 257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTH 336 (337) Q Consensus 257 lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~~ 336 (337) +-+.-...--+.|..+++ .++|+.+|-|.. ..|.+..+ .-+.+.|.|.|+|=+-..+.++|++ T Consensus 193 i~~~~~~l~~~~v~~~~~-~Gl~v~vwTv~~------------~~n~~~~~----~~l~~~GVdgI~TD~P~~~~~~l~~ 255 (258) T 2o55_A 193 VSMLFHYLTKEQVCTAHE-KGLSVTVWMPWI------------FDDSEEDW----KKCLELQVDLICSNYPFGLMNFLSN 255 (258) T ss_dssp EEEEGGGCCHHHHHHHHH-TTCEEEEECCTT------------CCCCHHHH----HHHHHHTCSEEEESCHHHHHHHHTC T ss_pred EECCCCCCCHHHHHHHHH-CCCEEEEEECCC------------CCCCHHHH----HHHHHCCCCEEEECCHHHHHHHHHH T ss_conf 741331189999999998-699899994778------------89859999----9999689999997989999999986 No 191 >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomics, NPPSFA; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=30.52 E-value=26 Score=15.05 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=27.4 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 677774431572114788988887664089879955 Q gi|255764463|r 225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK 260 (337) Q Consensus 225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK 260 (337) +.-||+.|..|+-+.---+-|+.+-|.|||-|+=-| T Consensus 113 ~HI~K~~F~vPFVCGarnLGEALRRI~EGAaMIRTK 148 (330) T 2yzr_A 113 FHIYKKKFNVPFVCGARNLGEAVRRIWEGAAMIRTK 148 (330) T ss_dssp CCCCGGGCSSCEEEECSSHHHHHHHHHHTCSEEEEC T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHHCCHHHCCCC T ss_conf 213330477764337897089999886002111367 No 192 >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.70A {Burkholderia xenovorans LB400} PDB: 2oo6_A Probab=30.17 E-value=27 Score=14.98 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=47.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC--------------C--HHHHHHHHHHHHH- Q ss_conf 8786328899999999999988893676330256334554454215765--------------3--7999999999730- Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD--------------N--LINEGICAIKKNI- 121 (337) Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d--------------g--lv~rAIr~IK~~f- 121 (337) +-+...-+.+.+.++++++.+.|-+++-+=.+.+.. .+ ...|.++ . -..+.|+++++.+ T Consensus 136 ~~~~~~~~~d~~~~~~~~~~~~Gf~~~K~kvg~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~air~~~G 211 (409) T 3go2_A 136 FFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDD-GP---LHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAG 211 (409) T ss_dssp TSSSCCCSHHHHHHHHHHHHHTTCCEEEECCEECSS-SS---CEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHC T ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 116766677999999999997698768776223467-64---10145544567776443238999999999999999719 Q ss_pred CCCEEEECCCCCHHHC Q ss_conf 1447986133271001 Q gi|255764463|r 122 PNIGIITDVALDPFTI 137 (337) Q Consensus 122 pdl~vi~DVcLc~YT~ 137 (337) ||+.++.|. -+.||. T Consensus 212 ~d~~l~vDa-N~~~~~ 226 (409) T 3go2_A 212 PDVEILLDL-NFNAKP 226 (409) T ss_dssp TTSEEEEEC-TTCSCH T ss_pred CCCCEEECC-CCCCCH T ss_conf 986267516-776547 No 193 >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp} Probab=30.14 E-value=27 Score=14.97 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=20.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 7863288999999999999888936763 Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAI 87 (337) Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~L 87 (337) ||. ++|.+.-+..++.+.++|+..|=+ T Consensus 21 ~~~-~~s~~~k~~i~~~L~~~Gv~~IEv 47 (307) T 1ydo_A 21 EPV-WIATEDKITWINQLSRTGLSYIEI 47 (307) T ss_dssp SSS-CCCHHHHHHHHHHHHTTTCSEEEE T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 899-889999999999999819998995 No 194 >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Probab=29.75 E-value=27 Score=14.93 Aligned_cols=71 Identities=14% Similarity=-0.006 Sum_probs=42.1 Q ss_pred CCCCC-CHHHHHHHHHHHHH----HCCCCEEEEC---CCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 31572-11478898888766----4089879955---3114589999999624---998999934618999999998889 Q gi|255764463|r 232 YYLDP-ANVQEAIREASIDI----QESADMLLVK---PGLPYLDVCFRIKEKF---GLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 232 YQmd~-~n~~eA~~e~~~D~----~EGAD~lMVK---Pa~~yLDii~~~k~~~---~~P~~aYqVSGEYami~~a~~~g~ 300 (337) ||... .|..||+....... .+--|++++- |+|.=+++++.+|+.. .+|+...-.+++-.-...|-+.|. T Consensus 35 ~~v~~~~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~~G~el~~~ir~~~~~~~iPvI~lT~~~~~~~~~~a~~~Ga 114 (149) T 1i3c_A 35 HELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHV 114 (149) T ss_dssp EEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTC T ss_pred CEEEEECCHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCC T ss_conf 47999899999999998500221268988899848999986499999998580447998899956899999999998799 Q ss_pred CC Q ss_conf 78 Q gi|255764463|r 301 IN 302 (337) Q Consensus 301 ~d 302 (337) -+ T Consensus 115 ~~ 116 (149) T 1i3c_A 115 NC 116 (149) T ss_dssp SE T ss_pred CE T ss_conf 89 No 195 >1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} SCOP: c.1.21.1 PDB: 1ad4_A* Probab=29.74 E-value=27 Score=14.93 Aligned_cols=206 Identities=16% Similarity=0.213 Sum_probs=96.6 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHCCCEEEECCCCCHHHCCCCC Q ss_conf 889999999999998889367633025633455445421576537999---99999973014479861332710011431 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINE---GICAIKKNIPNIGIITDVALDPFTIHGHD 141 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~r---AIr~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337) ++.+.+++.+++..+.|..-|=+ |+ ++ +--|+.-..++-=..| .++.+++. ++. +-+|.|.. T Consensus 23 ~~~~~a~~~~~~~i~~GAdiIDI-Ga--eS--TrPga~~i~~eeE~~Rl~pvl~~i~~~--~~~----iSIDT~~~---- 87 (266) T 1ad1_A 23 NNVESAVTRVKAMMDEGADIIDV-GG--VS--TRPGHEMITVEEELNRVLPVVEAIVGF--DVK----ISVDTFRS---- 87 (266) T ss_dssp CSHHHHHHHHHHHHHTTCSEEEE-ES--CC--CSTTCCCCCHHHHHHHHHHHHHHHTTS--SSE----EEEECSCH---- T ss_pred CCHHHHHHHHHHHHHCCCCEEEE-CC--CC--CCCCCCCCCHHHHHHHHHHHHHHHHCC--CCC----EEEEECCH---- T ss_conf 89999999999999879989997-98--61--899998669999998840245554136--862----44601889---- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC-C-CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHH Q ss_conf 0013654462899999999999999628973524-6-6767799999999987788577300336664354301016753 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIAP-S-EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI 219 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP-S-dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~ 219 (337) ..++.| .++|+|||== | ...|.....+ .-+.+. .+.+|- +- T Consensus 88 ---------------eVa~~a---l~~G~~iINDVsgg~~D~~m~~~---va~~~~-~~ilmH-~~-------------- 130 (266) T 1ad1_A 88 ---------------EVAEAC---LKLGVDIINDQWAGLYDHRMFQV---VAKYDA-EIVLMH-NG-------------- 130 (266) T ss_dssp ---------------HHHHHH---HHTTCCEEEETTTTSSCTHHHHH---HHHTTC-EEEEEC-CC-------------- T ss_pred ---------------HHHHHH---HHCCCCEEEECCCCCCCCHHHHH---HHHCCC-CEEEEE-CC-------------- T ss_conf ---------------999999---98799199950346667028999---971499-868720-78-------------- Q ss_pred HCCCCCCCCCCCCCCCC-CHHHHH-HHHHHHHHHCCC--CEEEECCCH-------HHHHHHHHHHHH--CCCCEEEEECC Q ss_conf 10244677774431572-114788-988887664089--879955311-------458999999962--49989999346 Q gi|255764463|r 220 STRDLLKGDKKTYYLDP-ANVQEA-IREASIDIQESA--DMLLVKPGL-------PYLDVCFRIKEK--FGLPTFAYQVS 286 (337) Q Consensus 220 ~S~p~~~gdr~sYQmd~-~n~~eA-~~e~~~D~~EGA--D~lMVKPa~-------~yLDii~~~k~~--~~~P~~aYqVS 286 (337) ..| ..+|+ ....+- ......-...|- +-+++-||+ ..+.+++.++.- ++.|+.+ -+| T Consensus 131 -~~~--------~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~ll~~l~~~~~~~~PiLv-G~S 200 (266) T 1ad1_A 131 -NGN--------RDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLL-ATS 200 (266) T ss_dssp -CTT--------CCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHCHHHHHTTCSCBEE-CCT T ss_pred -CCC--------CCCCCHHHHHHHHHHHHHHHHHCCCCHHCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE-EEC T ss_conf -665--------5431000133578999999997598631388647636676721049999979997247986799-624 Q ss_pred HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH Q ss_conf 18999999998889--788999999999997726999982018999999 Q gi|255764463|r 287 GEYAMIKAASLQGW--INKNDAMMESLLAFKRAGCDGIFTYFAMEAARI 333 (337) Q Consensus 287 GEYami~~a~~~g~--~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~ 333 (337) =- +||........ .+...+.+-+...-...||++|=+==.++..+. T Consensus 201 RK-sfi~~l~g~~~~~~~r~~~tla~~~~a~~~Ga~iiRvHDV~~~~~~ 248 (266) T 1ad1_A 201 RK-RFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKL 248 (266) T ss_dssp TS-HHHHTTSSSCCCGGGGHHHHHHHHHHHHHHTCCEEEESCHHHHHHH T ss_pred HH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH T ss_conf 78-8999975689987874289999999999879999994997999999 No 196 >2e1d_A Transaldolase; pentose phosphate pathway, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1 PDB: 2cwn_A 1f05_A Probab=29.68 E-value=28 Score=14.92 Aligned_cols=147 Identities=20% Similarity=0.184 Sum_probs=65.4 Q ss_pred CCCCCCCHHHHHHHHHHH----HH--CCCEEEECCCCCHHHCCCCCCC--CC-CCCCCHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 215765379999999997----30--1447986133271001143100--13-654462899999999999999628973 Q gi|255764463|r 102 HIIDPDNLINEGICAIKK----NI--PNIGIITDVALDPFTIHGHDGI--LC-DGEIVNDETIELISHAAVIQADAGADI 172 (337) Q Consensus 102 eA~n~dglv~rAIr~IK~----~f--pdl~vi~DVcLc~YT~hGHcGi--~~-~g~IdND~Tl~~L~k~Al~~A~AGaDi 172 (337) -++|-++.+-+|.|.++- .. |+++|=. |-|.-|---+ +. ..-|.--.|+--=..||+.-|+|||.+ T Consensus 108 la~dt~~~i~~A~~l~~~~~~~~i~~~~v~IKI-----PaT~eGi~A~~~L~~~~GI~vN~TLiFS~~Qa~aaa~Aga~~ 182 (331) T 2e1d_A 108 LSFDKDAMVARARRLIELYKEAGVGKDRILIKL-----SSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTL 182 (331) T ss_dssp GTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEE-----ECSHHHHHHHHHHHHHHCCCEEEEEECSHHHHHHHHHHTCSE T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-----CCCHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHCCCEE T ss_conf 015999999999999999886288876468827-----998789999999999459714478872488779999669759 Q ss_pred EECCCCCCCHHHHHHH-HHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 5246676779999999-998778857730033666435430101675310244677774431572114788988887664 Q gi|255764463|r 173 IAPSEMMDGRVQEIRK-KLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 (337) Q Consensus 173 vAPSdMMDGrV~aIR~-~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~ 251 (337) |+| .=|||-..-. .++.+.+..-+. =........|.-|+.---++ ...+ -.++|..+... . T Consensus 183 iSp---fVgRidd~~~~~~~~~~~~~~g~--~Gi~~~~~i~~~~~~~~~~T-~v~~------AS~r~~~~v~~------l 244 (331) T 2e1d_A 183 ISP---FVGRILDWHVANTDKKSYEPQGD--PGVKSVTKIYNYYKKFGYKT-IVMG------ASFRNTGEIKA------L 244 (331) T ss_dssp EEE---BSHHHHHHHHHHSSCCCCCGGGC--HHHHHHHHHHHHHHHTTCCC-EEEE------BCCSSHHHHHT------T T ss_pred EEE---ECCCCHHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCE-EEEE------CCCCCHHHHHH------H T ss_conf 986---22430234430354322465677--07999999999999819663-8831------57698999999------6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHC Q ss_conf 0898799553114589999999624 Q gi|255764463|r 252 ESADMLLVKPGLPYLDVCFRIKEKF 276 (337) Q Consensus 252 EGAD~lMVKPa~~yLDii~~~k~~~ 276 (337) -|+|.+-+-| +++.++.+.. T Consensus 245 aG~d~vTi~p-----~~l~~l~~~~ 264 (331) T 2e1d_A 245 AGCDFLTISP-----KLLGELLKDN 264 (331) T ss_dssp TTSSEEEECH-----HHHHHHHHCC T ss_pred CCCCEEECCH-----HHHHHHHHCC T ss_conf 3899897699-----9999998668 No 197 >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Probab=29.50 E-value=28 Score=14.90 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=8.7 Q ss_pred HHHHHCCCCEEEEEE Q ss_conf 999988893676330 Q gi|255764463|r 75 KQVADLGIPAIAIFP 89 (337) Q Consensus 75 e~~~~lGI~av~LFp 89 (337) +.++..|...|--++ T Consensus 102 q~l~~~g~~rVf~I~ 116 (345) T 3a5y_A 102 KRLLVAGCGPVFQLC 116 (345) T ss_dssp HHHHHTTCCSEEEEE T ss_pred HHHHHCCCCCCEEEE T ss_conf 999967998727983 No 198 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Probab=29.44 E-value=18 Score=16.18 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=7.0 Q ss_pred HHHHHHHHHCCCEE Q ss_conf 99999973014479 Q gi|255764463|r 113 GICAIKKNIPNIGI 126 (337) Q Consensus 113 AIr~IK~~fpdl~v 126 (337) .++.||+..|++-| T Consensus 62 ll~~ir~~~p~~pV 75 (368) T 3dzd_A 62 FIDFIKENSPDSVV 75 (368) T ss_dssp HHHHHHHHCTTCEE T ss_pred HHHHHHHCCCCCCC T ss_conf 99999963998754 No 199 >3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} Probab=29.38 E-value=14 Score=16.83 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=12.8 Q ss_pred HHHHHHHHHHCCCCEEEEEE Q ss_conf 99999999988893676330 Q gi|255764463|r 70 AVEKIKQVADLGIPAIAIFP 89 (337) Q Consensus 70 L~~eie~~~~lGI~av~LFp 89 (337) +.+.++.+.+.|+.+|-|++ T Consensus 21 l~e~l~~~a~~G~~~IEl~~ 40 (284) T 3ju2_A 21 FAEAVDICLKHGITAIAPWR 40 (284) T ss_dssp HHHHHHHHHHTTCCEEECBH T ss_pred HHHHHHHHHHHCCCEEEECC T ss_conf 99999999981999899777 No 200 >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Probab=29.20 E-value=28 Score=14.87 Aligned_cols=180 Identities=15% Similarity=0.065 Sum_probs=97.3 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC---CCCC------CC--------CHHHHHHHHHHHHHHHHHC Q ss_conf 65379999999997301447986133271001143100---1365------44--------6289999999999999962 Q gi|255764463|r 106 PDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI---LCDG------EI--------VNDETIELISHAAVIQADA 168 (337) Q Consensus 106 ~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi---~~~g------~I--------dND~Tl~~L~k~Al~~A~A 168 (337) .+..+..+++.+|..-++..++.- +..|+|.-+|.-- ..+. -. .-+...+.+.+.+..+.+| T Consensus 113 ~~~~~~~~~~~~k~~~~~vpligf-~ggP~Tla~~l~~~~~~~~~~~~~~~~~~~P~~~~~ll~~~t~~~~~~~~~qi~~ 191 (338) T 2eja_A 113 QNAYVYEIIKRVKEAQDEVPVIGF-AGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKA 191 (338) T ss_dssp GGHHHHHHHHHHHHHCCSSCEEEE-EECHHHHHHHHHHTSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCCCCCEEEE-CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 201389999998860677546886-5858999999972776405788999998493789999999999999999999971 Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 89735246676779999999998778857730033666435430101675310244677774431572114788988887 Q gi|255764463|r 169 GADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI 248 (337) Q Consensus 169 GaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~ 248 (337) |||+|.-.|..-+ +||- ..|..-.+-+.+..++.-... |+.... +-.++... + ... T Consensus 192 Gad~i~i~d~~a~------------------~ls~-~~~~ef~~p~~~~i~~~~~~~-~~~~~i-h~~~~~~~-~--~~~ 247 (338) T 2eja_A 192 GADVVQIFDSWVN------------------NLSL-EDYGEYVYPYVNYLISELKDF-SDTPVI-YFFRGSSS-F--IDL 247 (338) T ss_dssp TCSEEEEEETTGG------------------GSCH-HHHHHHTHHHHHHHHHHHHHH-CCCCEE-EEESSHHH-H--HHH T ss_pred CCCEEEEECCCCC------------------CCCH-HHHHHHHCCHHHHHHHHHHHC-CCCCEE-EECCCCHH-H--HHH T ss_conf 7883376323345------------------4788-999987113699999999743-799648-72376023-4--444 Q ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC--EEEE Q ss_conf 664089879955311458999999962499899993461899999999888978899999999999772699--9982 Q gi|255764463|r 249 DIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD--GIFT 324 (337) Q Consensus 249 D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd--~Iit 324 (337) -.+-|+|.+=+-.... +.++++.++..+ .=+|+-. ++ .| +.+.+.-|+..+++..|.+ +|+. T Consensus 248 ~~~~~~d~~s~d~~~d----l~~a~~~~~~~l-~GNldP~--~l-----~~--~~e~i~~~~~~~l~~~~~~~g~I~~ 311 (338) T 2eja_A 248 AVDYRADALSVDWSVD----IPELFKIYDKGF-QGNLEPA--VL-----YA--SEEVIEEKTLGLLRRIPVKTRYVFN 311 (338) T ss_dssp HTTSCCSEEECCTTSC----HHHHHHHCCSEE-ECCBCGG--GG-----GS--CHHHHHHHHHHHHTTCCCSSSEEBC T ss_pred HHCCCCCCCCCCCCCC----HHHHHHHCCCCE-EECCCHH--HH-----CC--CHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 3026766304566689----999998589954-8489827--87-----69--9999999999999966999997997 No 201 >3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Probab=29.09 E-value=28 Score=14.85 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=43.5 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 114788988887664089879955---3114589999999624-99899993461899999999888978 Q gi|255764463|r 237 ANVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 237 ~n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) .|..||+.... ++..|++.+- |+|.=+++++.+++.. ..|+...-..++...+..|-+.|..+ T Consensus 36 ~~g~eal~~~~---~~~pdlillDi~MP~~dG~el~~~i~~~~p~~~iI~lT~~~~~~~~~~a~~~Ga~~ 102 (141) T 3cu5_A 36 DDGINAIQIAL---KHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIR 102 (141) T ss_dssp SSHHHHHHHHT---TSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCE T ss_pred CCHHHHHHHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE T ss_conf 99999999998---67999899736899999999999999758799399997879999999999869998 No 202 >2rdx_A Mandelate racemase/muconate lactonizing enzyme, putative; enolase, structural genomics, PSI, protein structure initiative, nysgrc; 2.00A {Roseovarius nubinhibens ism} Probab=28.82 E-value=28 Score=14.82 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=47.4 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 11666758988110488878632889999999999998889367633025633455445421576537999999999730 Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337) .|++--=|...++.|+.-.-....+.+.+.++++...+.|.+.+-+-.+.+. .--.+.++++++.+ T Consensus 121 ~pl~~lLgg~~~~~i~~~~~~~~~~~~e~~~~~~~~~~~G~~~~K~k~~~~~--------------~~d~~~i~~ir~~~ 186 (379) T 2rdx_A 121 QPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADW--------------QSDIDRIRACLPLL 186 (379) T ss_dssp CBHHHHTTSCCCSSEEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCSCH--------------HHHHHHHHHHGGGS T ss_pred CCHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCH--------------HHHHHHHHHHHHHC T ss_conf 8624315986455553010467799899989999987438622432047871--------------88999999976302 Q ss_pred C-CCEEEECC Q ss_conf 1-44798613 Q gi|255764463|r 122 P-NIGIITDV 130 (337) Q Consensus 122 p-dl~vi~DV 130 (337) + +..++.|. T Consensus 187 g~~~~l~vDa 196 (379) T 2rdx_A 187 EPGEKAMADA 196 (379) T ss_dssp CTTCEEEEEC T ss_pred CCCCEEECCC T ss_conf 8730353245 No 203 >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2, protein structure initiative; HET: MSE; 1.72A {Roseovarius SP} Probab=28.76 E-value=29 Score=14.82 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=16.7 Q ss_pred CCCCEEEECCC----HHHHHHHHHHHHHCCCCEEEEE Q ss_conf 08987995531----1458999999962499899993 Q gi|255764463|r 252 ESADMLLVKPG----LPYLDVCFRIKEKFGLPTFAYQ 284 (337) Q Consensus 252 EGAD~lMVKPa----~~yLDii~~~k~~~~~P~~aYq 284 (337) ..+|++.+||. +.-.=-|..+.+..++|+..-. T Consensus 259 ~~~d~~~~d~~~~GGit~~~~i~~~a~~~gi~~~~~~ 295 (377) T 2pmq_A 259 SLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCDD 295 (377) T ss_dssp TCCSEECCBHHHHTSHHHHHHHHHHHHHHTCCEECBC T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECC T ss_conf 7878740345433761699999999998599887678 No 204 >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 Probab=28.61 E-value=29 Score=14.80 Aligned_cols=213 Identities=16% Similarity=0.196 Sum_probs=100.8 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHCCCEEEECCCCCHHHCCCCC Q ss_conf 889999999999998889367633025633455445421576537999---99999973014479861332710011431 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINE---GICAIKKNIPNIGIITDVALDPFTIHGHD 141 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~r---AIr~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337) ++.+.+++.+++..+.|..-|=+ |+- + +--|+.-..++-=+.| .++.++.. ++.| -+|.|.. T Consensus 26 ~~~~~a~~~a~~~i~~GAdiIDI-G~e--S--TrPg~~~i~~eeE~~Rl~p~i~~~~~~--~~~i----SvDT~~~---- 90 (280) T 1eye_A 26 LDLDDAVKHGLAMAAAGAGIVDV-GGE--S--SRPGATRVDPAVETSRVIPVVKELAAQ--GITV----SIDTMRA---- 90 (280) T ss_dssp CSHHHHHHHHHHHHHTTCSEEEE-ECC------------------HHHHHHHHHHHHHT--TCCE----EEECSCH---- T ss_pred CCHHHHHHHHHHHHHCCCCEEEE-CCE--E--CCCCCCCCCHHHHHHCCCCEEEEECCC--CCEE----EEEECCH---- T ss_conf 89999999999999889949998-962--0--799895269999863246513321135--8447----6852768---- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-CCCCC-CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHH Q ss_conf 001365446289999999999999962897352-46676-7799999999987788577300336664354301016753 Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA-PSEMM-DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI 219 (337) Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-PSdMM-DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~ 219 (337) ..++.| .++|||+|- -|... |.....+- .+.+.. +.+| ++- | T Consensus 91 ---------------~Va~~a---l~~Ga~iINDvsg~~~d~~m~~~~---a~~~~~-~ilm-H~~-------g------ 134 (280) T 1eye_A 91 ---------------DVARAA---LQNGAQMVNDVSGGRADPAMGPLL---AEADVP-WVLM-HWR-------A------ 134 (280) T ss_dssp ---------------HHHHHH---HHTTCCEEEETTTTSSCTTHHHHH---HHHTCC-EEEE-CCC-------C------ T ss_pred ---------------HHHHHH---HHCCCEEEEECCCCCCCHHHHHHH---HHCCCC-EEEE-ECC-------C------ T ss_conf ---------------999999---973983897304354661677776---404787-6998-315-------6------ Q ss_pred HCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH-HHCCC--CEEEECCCHHH-------HHHHHHHHHH--CCCCEEEEECC Q ss_conf 102446777-744315721147889888876-64089--87995531145-------8999999962--49989999346 Q gi|255764463|r 220 STRDLLKGD-KKTYYLDPANVQEAIREASID-IQESA--DMLLVKPGLPY-------LDVCFRIKEK--FGLPTFAYQVS 286 (337) Q Consensus 220 ~S~p~~~gd-r~sYQmd~~n~~eA~~e~~~D-~~EGA--D~lMVKPa~~y-------LDii~~~k~~--~~~P~~aYqVS 286 (337) .|....+ ...|.-.......-+.+.... ..-|- +=+++-||+-| +.+++.++.. ++.|+.+ .+| T Consensus 135 --~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~Gi~~~~IilDPG~GFgKt~~~n~~ll~~l~~~~~~~~PiLv-G~S 211 (280) T 1eye_A 135 --VSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLV-GAS 211 (280) T ss_dssp --SCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEE-CCT T ss_pred --CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEH T ss_conf --65332223554553055579999999999998798644499808867775762589999888786148983698-613 Q ss_pred HHHHHHHHHHHCC---C--CCH---HHHHHHHHHHHHHHCCCEEEECHHHHHHHHH Q ss_conf 1899999999888---9--788---9999999999977269999820189999998 Q gi|255764463|r 287 GEYAMIKAASLQG---W--INK---NDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337) Q Consensus 287 GEYami~~a~~~g---~--~d~---~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337) =- ++|..-.... . .++ -.+..+++... -||++|=+==-++..+-| T Consensus 212 RK-sfig~~l~~~~~~~~~~~~R~~~T~a~~~~a~~--~Ga~iiRVHDV~e~~~al 264 (280) T 1eye_A 212 RK-RFLGALLAGPDGVMRPTDGRDTATAVISALAAL--HGAWGVRVHDVRASVDAI 264 (280) T ss_dssp TC-HHHHHHTCCSSSCCCCGGGGHHHHHHHHHHHHH--TTCSEEEESCHHHHHHHH T ss_pred HH-HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCCEEEECCHHHHHHHH T ss_conf 77-899987558765558867631899999999998--799999979989999999 No 205 >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A* Probab=28.59 E-value=29 Score=14.80 Aligned_cols=38 Identities=24% Similarity=0.094 Sum_probs=29.1 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 46777744315721147889888876640898799553 Q gi|255764463|r 224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP 261 (337) Q Consensus 224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP 261 (337) .+.-||..|..|+-+.---+-|+.+-|.|||.|+=-|- T Consensus 116 ~~HI~K~~f~vPFVCGarnLgEALRRI~EGAaMIRTKG 153 (297) T 2zbt_A 116 EHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKG 153 (297) T ss_dssp SCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECC T ss_pred CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 13454214777744588872899998860022311568 No 206 >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A Probab=28.21 E-value=29 Score=14.75 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=40.2 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH--------HHHHHHHHHHHHC--CCEEEECCCCC Q ss_conf 89999999999998889367633025633455445421576537--------9999999997301--44798613327 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL--------INEGICAIKKNIP--NIGIITDVALD 133 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl--------v~rAIr~IK~~fp--dl~vi~DVcLc 133 (337) ....+.+.+..+.++||++|-|-|+.+... +..| |++-++ -....+++-++.- .|.||.|+.+- T Consensus 38 d~~gi~~~LdyLk~LGv~~I~l~Pi~~~~~-~~~G---Y~~~dy~~vd~~~Gt~~dfk~Lv~~aH~~GI~VilDvV~N 111 (589) T 3aj7_A 38 DMKGIASKLEYIKELGADAIWISPFYDSPQ-DDMG---YDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVIN 111 (589) T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCEECCC-TTTT---SSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCS T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 999999722899875998899697756999-8989---4853678757001999999999999998889899997867 No 207 >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, structural genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima MSB8} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A Probab=27.95 E-value=29 Score=14.72 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=39.4 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 1104888786328899999999999988893676330256334554454215765379999999997301447986133 Q gi|255764463|r 53 VESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA 131 (337) Q Consensus 53 k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc 131 (337) +.+|+.---+...+.+...+++++..+.|.+.+-+=. .... + --...+++|++.+|++.++.|.. T Consensus 126 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv--~~~~-----------~-~d~~~~~~i~~~~~~~~l~lDaN 190 (345) T 2zad_A 126 RDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKV--GENL-----------K-EDIEAVEEIAKVTRGAKYIVDAN 190 (345) T ss_dssp CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEEC--CSCH-----------H-HHHHHHHHHHHHSTTCEEEEECT T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC--CCCC-----------H-HHHHHHHHHHHHHCCCCEEEECC T ss_conf 3320231025779999999999999975887013466--8770-----------8-89999999997514766177607 No 208 >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} Probab=27.86 E-value=30 Score=14.71 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=50.8 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 11666758988110488878632889999999999998889367633025633455445421576537999999999730 Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337) +|++---|...+..++.--.....+.+....++.+..+.|.+.+-+-.+..+. .-..+.++.+++.+ T Consensus 122 ~pl~~lLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kiKv~~~~~-------------~~d~~~i~~i~~~~ 188 (377) T 3my9_A 122 LSVADLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVKPH-------------AEELRILETMRGEF 188 (377) T ss_dssp CBTTGGGTCCSCSEEEBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSSCH-------------HHHHHHHHHHHHHH T ss_pred CCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-------------HHHHHHHHHHHHHC T ss_conf 71354046775531255420257737788999999875055200134567660-------------89999999999862 Q ss_pred -CCCEEEECCCCCHHH Q ss_conf -144798613327100 Q gi|255764463|r 122 -PNIGIITDVALDPFT 136 (337) Q Consensus 122 -pdl~vi~DVcLc~YT 136 (337) |++.++.|. -+.|| T Consensus 189 ~~~~~l~vDa-N~~~~ 203 (377) T 3my9_A 189 GERIDLRLDF-NQALT 203 (377) T ss_dssp GGGSEEEEEC-TTCCC T ss_pred CCCEEEEECC-CCCCC T ss_conf 8853377064-55899 No 209 >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrolase, (beta/alpha)8-barrel; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* Probab=27.81 E-value=30 Score=14.71 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=21.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 99999999999988893676330256 Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIP 92 (337) Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~ 92 (337) -..+.+.+..+.++||++|-|=|+.. T Consensus 27 ~~~i~~kLdyL~~LGvtaIwl~Pv~~ 52 (435) T 1mxg_A 27 WDHIRSKIPEWYEAGISAIWLPPPSK 52 (435) T ss_dssp HHHHHHHHHHHHHHTCCEEECCCCSE T ss_pred HHHHHHHHHHHHHCCCCEEEECCCEE T ss_conf 99999968999962999899596700 No 210 >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A Probab=27.80 E-value=30 Score=14.71 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=71.5 Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHH---HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 11666758988110488878632889999---999999998889367633025633455445421576537999999999 Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVA---VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK 118 (337) Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L---~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK 118 (337) .|++|.=.+ =+|-|-||-+++ .+.++.+.++|+..| .||...++ |+ .| ..+.+.+- T Consensus 52 ipv~vMIRP--------R~GdF~Ys~~E~~~M~~dI~~~k~~G~dGv-VfG~L~~d-----g~--iD-----~~~~~~Li 110 (256) T 1twd_A 52 IPVHPIIRP--------RGGDFCYSDGEFAAILEDVRTVRELGFPGL-VTGVLDVD-----GN--VD-----MPRMEKIM 110 (256) T ss_dssp SCEEEBCCS--------SSSCSCCCHHHHHHHHHHHHHHHHTTCSEE-EECCBCTT-----SS--BC-----HHHHHHHH T ss_pred CCEEEEEEC--------CCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEEEECCC-----CC--CC-----HHHHHHHH T ss_conf 974999845--------899888899999999999999998599967-88668899-----98--49-----99999999 Q ss_pred HHHCCCEEEE----CCCCCHHH------CCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH Q ss_conf 7301447986----13327100------11431001365----4462899999999999999628973524667677999 Q gi|255764463|r 119 KNIPNIGIIT----DVALDPFT------IHGHDGILCDG----EIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ 184 (337) Q Consensus 119 ~~fpdl~vi~----DVcLc~YT------~hGHcGi~~~g----~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~ 184 (337) +..+.+-+.- |.|-||+. ..|-+.|+.-| -.+.-+.|..|.++ + .|--|++-+.--..-+. T Consensus 111 ~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSG~~~~a~~G~~~L~~L~~~----a-~~~iIm~GgGI~~~Ni~ 185 (256) T 1twd_A 111 AAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAH----R-DAPIIMAGAGVRAENLH 185 (256) T ss_dssp HHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTS----S-SCCEEEEESSCCTTTHH T ss_pred HHHCCCCEEEECCHHHHCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH----C-CCCEEEEECCCCHHHHH T ss_conf 985768647744256528999999999975989786578967777769999999985----6-99389972777999999 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999998778857 Q gi|255764463|r 185 EIRKKLDSHGHIN 197 (337) Q Consensus 185 aIR~~Ld~~g~~~ 197 (337) .|. + .|+.. T Consensus 186 ~l~---~-tG~~e 194 (256) T 1twd_A 186 HFL---D-AGVLE 194 (256) T ss_dssp HHH---H-HTCSE T ss_pred HHH---H-CCCCE T ss_conf 999---7-79887 No 211 >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} Probab=27.63 E-value=30 Score=14.69 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=11.5 Q ss_pred CCCEEECCCCCCCHHHHHHHHHHH Q ss_conf 897352466767799999999987 Q gi|255764463|r 169 GADIIAPSEMMDGRVQEIRKKLDS 192 (337) Q Consensus 169 GaDivAPSdMMDGrV~aIR~~Ld~ 192 (337) |-+.-.-+...|-.|..+|+.|+. T Consensus 174 ~~~~~~~~~tld~~I~rLRkKL~~ 197 (223) T 2hqr_A 174 EEPEMVTPNVIEVAINQIRQKMDK 197 (223) T ss_dssp CSSCSCGGGTHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 887788867799999999998527 No 212 >1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination, DNA repair, spine, structural genomics, structural proteomics in europe, hydrolase; 2.57A {Bacillus anthracis} SCOP: c.1.15.1 Probab=27.11 E-value=30 Score=14.63 Aligned_cols=58 Identities=16% Similarity=0.352 Sum_probs=33.5 Q ss_pred HHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCC--CCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEC Q ss_conf 8999863477888773311666758988110488--878632889999999999998889-36763302 Q gi|255764463|r 25 WIREMVREHRLSVSDLILPIFLTSGEKTVESINS--MPDVMRMSIDVAVEKIKQVADLGI-PAIAIFPN 90 (337) Q Consensus 25 ~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~S--MPGv~R~Sid~L~~eie~~~~lGI-~av~LFp~ 90 (337) ..|.++.|+.+ -|+||+--=-. -..| =|.+.+.|++.+.++++.+.++|+ +.+.+-|+ T Consensus 62 ~~~~~~~~~~~------~~i~vHapYli--NLas~~~~~~r~~Si~~l~~~l~~a~~Lg~a~~vV~HpG 122 (307) T 1xp3_A 62 AGRKHMEQNGI------EEIIIHAPYII--NVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLHPG 122 (307) T ss_dssp HHHHHHHHTTC------CCEEEECCTTC--CTTCCSCHHHHHHHHHHHHHHHHHHHHSSSCCEEEECCE T ss_pred HHHHHHHHCCC------CCEEEECCEEE--CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 99999997389------85697145022--556654089999999999999999998488987998997 No 213 >2pcq_A Putative dihidrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8} Probab=27.10 E-value=30 Score=14.63 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=21.4 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 4888786328899999999999988893676330 Q gi|255764463|r 56 INSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFP 89 (337) Q Consensus 56 I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp 89 (337) ++-+-|+...|....++.++++.++|+.+++++| T Consensus 63 ~pvi~gv~~~s~~~~i~~a~~a~~~G~d~v~~~p 96 (283) T 2pcq_A 63 KPFLVGLMEETLPQAEGALLEAKAAGAMALLATP 96 (283) T ss_dssp SCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECC T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECC T ss_conf 9879996787568899998888864998799558 No 214 >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, alpha-1,4-glucan-4-glucanohydrolase, thermostability, calcium, sodium; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Probab=26.71 E-value=31 Score=14.58 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=40.3 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC--------------CC-CHHHHHHHHHHHHH-C-CCEEEE Q ss_conf 8999999999999888936763302563345544542157--------------65-37999999999730-1-447986 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIID--------------PD-NLINEGICAIKKNI-P-NIGIIT 128 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n--------------~d-glv~rAIr~IK~~f-p-dl~vi~ 128 (337) .-..|.+.+..+.++|+.+|-|=|..+.......|-..++ +. |=. ...+++-+++ - .|-||. T Consensus 22 ~w~~i~~kLdyL~~lGv~aI~l~Pi~~~~~~~~~GY~~~~~y~~~~~~~~~~vd~~~Gt~-~dfk~LV~~aH~~Gi~Vil 100 (515) T 1hvx_A 22 LWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTK-AQYLQAIQAAHAAGMQVYA 100 (515) T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCH-HHHHHHHHHHHHTTCEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCEEEE T ss_conf 099999978999974998899697852889899897756674555455566557889999-9999999999988898999 Q ss_pred CCCC Q ss_conf 1332 Q gi|255764463|r 129 DVAL 132 (337) Q Consensus 129 DVcL 132 (337) |+-+ T Consensus 101 D~V~ 104 (515) T 1hvx_A 101 DVVF 104 (515) T ss_dssp EECC T ss_pred EECC T ss_conf 9785 No 215 >3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae} Probab=26.57 E-value=31 Score=14.56 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=37.7 Q ss_pred CCCCCCCHHHHHHHHHHH----HH--CCCEEEECCCCCHHHCCCCCCC--C--CCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 215765379999999997----30--1447986133271001143100--1--365446289999999999999962897 Q gi|255764463|r 102 HIIDPDNLINEGICAIKK----NI--PNIGIITDVALDPFTIHGHDGI--L--CDGEIVNDETIELISHAAVIQADAGAD 171 (337) Q Consensus 102 eA~n~dglv~rAIr~IK~----~f--pdl~vi~DVcLc~YT~hGHcGi--~--~~g~IdND~Tl~~L~k~Al~~A~AGaD 171 (337) -|+|-++-+-+|.+.++- .. |+++|=. |-|..|---+ + .+| |.--.|+--=..||+.-|+||+. T Consensus 113 la~dt~~ti~~A~~l~~~~~~~~i~~~nv~IKI-----PaT~eGi~A~~~L~~~eG-I~vNvTLiFS~~Qa~aaa~Ag~~ 186 (339) T 3cq0_A 113 LSFDKKATVKKALHIIKLYKDAGVPKERVLIKI-----ASTWEGIQAARELEVKHG-IHCNMTLLFSFTQAVACAEANVT 186 (339) T ss_dssp GTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEE-----ECSHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHTTCS T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-----CCCHHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHHCCCC T ss_conf 357778999999999999885278876468837-----998799999999998559-70436774379999999975955 Q ss_pred EEEC Q ss_conf 3524 Q gi|255764463|r 172 IIAP 175 (337) Q Consensus 172 ivAP 175 (337) .|+| T Consensus 187 ~iSp 190 (339) T 3cq0_A 187 LISP 190 (339) T ss_dssp EEEE T ss_pred EEEH T ss_conf 7736 No 216 >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Probab=26.18 E-value=32 Score=14.52 Aligned_cols=164 Identities=13% Similarity=0.207 Sum_probs=90.3 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001 Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337) Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337) +|+..+-+.++-+- +.|+ -.|=..|+.++-|+..+.+-|...|+. ++.+.++=-|-+|- + T Consensus 23 lgl~~leD~Le~ag----------~yID-~~K~g~GTs~l~~~~~L~eKI~l~~~~--~V~v~~GGtlfE~a-------~ 82 (251) T 1qwg_A 23 LPPKFVEDYLKVCG----------DYID-FVKFGWGTSAVIDRDVVKEKINYYKDW--GIKVYPGGTLFEYA-------Y 82 (251) T ss_dssp CCHHHHHHHHHHHG----------GGCS-EEEECTTGGGGSCHHHHHHHHHHHHTT--TCEEEECHHHHHHH-------H T ss_pred CCHHHHHHHHHHHH----------HHEE-EEEECCCEEEECCHHHHHHHHHHHHHC--CCEEECCCHHHHHH-------H T ss_conf 99899999999735----------4435-898557565005889999999999986--98275795799999-------9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC----C-CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHH Q ss_conf 3654462899999999999999628973524667----6-7799999999987788577300336664354301016753 Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEM----M-DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI 219 (337) Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM----M-DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~ 219 (337) ..|+ ++.+.+.+ .+-|.|+|-=||= = |-+...|+.+ -++||.=.+= ...|+.+. T Consensus 83 ~q~~------~~~y~~~~---~~lGf~~IEiSdG~i~i~~~~~~~~I~~a-~~~G~~V~~E--vG~K~~~~--------- 141 (251) T 1qwg_A 83 SKGK------FDEFLNEC---EKLGFEAVEISDGSSDISLEERNNAIKRA-KDNGFMVLTE--VGKKMPDK--------- 141 (251) T ss_dssp HTTC------HHHHHHHH---HHHTCCEEEECCSSSCCCHHHHHHHHHHH-HHTTCEEEEE--ECCSSHHH--------- T ss_pred HCCC------HHHHHHHH---HHCCCCEEEECCCCCCCCHHHHHHHHHHH-HHCCCEEEEC--CCCCCCCC--------- T ss_conf 7496------89999999---98599889973984468989999999999-8589989505--45788886--------- Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------CCHH------HHHHHHHHHHHCCCCEEEE Q ss_conf 10244677774431572114788988887664089879955-------3114------5899999996249989999 Q gi|255764463|r 220 STRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK-------PGLP------YLDVCFRIKEKFGLPTFAY 283 (337) Q Consensus 220 ~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-------Pa~~------yLDii~~~k~~~~~P~~aY 283 (337) ..++ ...+-++.+..|.+-||++||+. .|+. --|++..+-+.+.+--..+ T Consensus 142 -----------~~~~---~~~~~i~~~~~~LeaGA~~ViiEarEsG~~~Gi~~~~g~~r~~~i~~i~~~~~~~~iif 204 (251) T 1qwg_A 142 -----------DKQL---TIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIF 204 (251) T ss_dssp -----------HTTC---CHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEE T ss_pred -----------CCCC---CHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCCEEE T ss_conf -----------6666---99999999999996688178862232077601346888701889999998589202799 No 217 >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Probab=26.08 E-value=32 Score=14.51 Aligned_cols=156 Identities=16% Similarity=0.179 Sum_probs=88.9 Q ss_pred CCHHHCCCCEEEE---CCCCCEEECCCCCCCC-------CC--CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC Q ss_conf 8887733116667---5898811048887863-------28--8999999999999888936763302563345544542 Q gi|255764463|r 35 LSVSDLILPIFLT---SGEKTVESINSMPDVM-------RM--SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSH 102 (337) Q Consensus 35 Ls~~dLI~PiFV~---eg~~~k~~I~SMPGv~-------R~--Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gse 102 (337) .+.++.||=||+. +|......+..++... ++ .+..+.+.+..+.+|||++|-|=|..+...++ .+-+ T Consensus 103 ~~~~~viY~I~pdRF~ngd~~nd~~~~~~~~~~~~~~~~~~gGDl~GI~~~LdYLk~LGvtaIwL~Pi~e~~~~~-~syh 181 (601) T 3edf_A 103 FGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAA-YSYH 181 (601) T ss_dssp CCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSS-SGGG T ss_pred CCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCC T ss_conf 176887999544650479976576766655666655688777379999985199997699889969985788888-8899 Q ss_pred CCCCCCH------------HHHHHHHHHHHHCCCEEEECCCCCHHH---------------------------------- Q ss_conf 1576537------------999999999730144798613327100---------------------------------- Q gi|255764463|r 103 IIDPDNL------------INEGICAIKKNIPNIGIITDVALDPFT---------------------------------- 136 (337) Q Consensus 103 A~n~dgl------------v~rAIr~IK~~fpdl~vi~DVcLc~YT---------------------------------- 136 (337) .|+..++ ..+-|.+.+++ .|-||.|+-+-.-. T Consensus 182 GY~~~Dy~~VDp~fGt~edf~~Lv~~aH~~--GikVIlD~V~NH~~~~h~w~~d~~~~d~~~~~~~~~~~~~~~~~~~~~ 259 (601) T 3edf_A 182 GYAATDHYRIDPRYGSNEDFVRLSTEARKR--GMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDP 259 (601) T ss_dssp CCSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECCSBCCTTSGGGGSCSSTTSBGGGGSCCBCCCCGGGGGCT T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 957557786284559999999999999878--998999860566646764120278876544466668755555567886 Q ss_pred --CCC-------CCCCCC--CCCCCHHHHHHHHHHHHHHHHH-CCCCEE---ECCCCCCCHHHHHHHHHHHC Q ss_conf --114-------310013--6544628999999999999996-289735---24667677999999999877 Q gi|255764463|r 137 --IHG-------HDGILC--DGEIVNDETIELISHAAVIQAD-AGADII---APSEMMDGRVQEIRKKLDSH 193 (337) Q Consensus 137 --~hG-------HcGi~~--~g~IdND~Tl~~L~k~Al~~A~-AGaDiv---APSdMMDGrV~aIR~~Ld~~ 193 (337) .++ |++.-. |=.-.|.+..+.|.+.+.-..+ .|+|-. +...+-..-....++++.+. T Consensus 260 ~~~~~~~~~~~~~~~~~~~pDLn~~np~v~~~l~~~~~~Wi~~~giDGfR~D~~~~~~~~f~~~~~~~i~~~ 331 (601) T 3edf_A 260 YAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAE 331 (601) T ss_dssp TCCHHHHHHHHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEESSGGGSCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 536676765313567788653265999999999888777776158655875255655567799999877765 No 218 >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Probab=25.78 E-value=32 Score=14.47 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=88.8 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH--------HHHHHHHHHHH-C-CCEEEECCCCCHH Q ss_conf 899999999999988893676330256334554454215765379--------99999999730-1-4479861332710 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLI--------NEGICAIKKNI-P-NIGIITDVALDPF 135 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv--------~rAIr~IK~~f-p-dl~vi~DVcLc~Y 135 (337) .+..+.+.+..+.+|||++|-|-|+.+.. +.+-|++-++. ....|.+-++. . .|.||.|+.+-.. T Consensus 174 dl~Gi~~kLdyLk~LGvt~I~L~Pi~~~~-----~~~GY~~~dy~~vd~~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~ 248 (588) T 1j0h_A 174 DLQGIIDHLDYLVDLGITGIYLTPIFRSP-----SNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHC 248 (588) T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECS-----SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 89999985589986899889969987798-----8789986666776845599999999999999879989998634565 Q ss_pred HCC------------------------------CC------CCCC--CCCCCCHHHHHHHHHHHHHHHH-HCCCCEE--- Q ss_conf 011------------------------------43------1001--3654462899999999999999-6289735--- Q gi|255764463|r 136 TIH------------------------------GH------DGIL--CDGEIVNDETIELISHAAVIQA-DAGADII--- 173 (337) Q Consensus 136 T~h------------------------------GH------cGi~--~~g~IdND~Tl~~L~k~Al~~A-~AGaDiv--- 173 (337) ... ++ .+.- .+-.-.|.+..+.+...+.-.. +-|+|-. T Consensus 249 ~~~~~~f~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~vr~~~~~~~~~w~~e~giDGfR~D 328 (588) T 1j0h_A 249 GYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLD 328 (588) T ss_dssp CTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEET T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEC T ss_conf 22245422332158876557732003677666776643211467654434559999999999999989997378603653 Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCEECH----------HHHHHHHHHCCHHHHHHC Q ss_conf 246676779999999998778857730033----------666435430101675310 Q gi|255764463|r 174 APSEMMDGRVQEIRKKLDSHGHINVGIMPY----------VAKFNSSFYGPYRDAIST 221 (337) Q Consensus 174 APSdMMDGrV~aIR~~Ld~~g~~~~~ImsY----------saKfaS~fYgPFRdA~~S 221 (337) +...|.......+++++.+.. .++.++.. ...|.+.+-.+|++++-. T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~-pd~~~ige~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 385 (588) T 1j0h_A 329 VANEIDHEFWREFRQEVKALK-PDVYILGEIWHDAMPWLRGDQFDAVMNYPFTDGVLR 385 (588) T ss_dssp TGGGSCHHHHHHHHHHHHHHC-TTCEEEECCSSCCGGGCSSSSCSEEBCHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCHHHH T ss_conf 512266455444443232007-983899975145636554764332236543310222 No 219 >3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae} Probab=25.68 E-value=32 Score=14.46 Aligned_cols=49 Identities=22% Similarity=0.118 Sum_probs=32.2 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH Q ss_conf 6777744315721147889888876640898799553114589999999 Q gi|255764463|r 225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIK 273 (337) Q Consensus 225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k 273 (337) +.-||..|..|+-..---+-|+.+-|.|||.|+=-|----.=||+..+| T Consensus 113 ~HI~K~~F~vPFVCGarnLGEAlRRI~EGAaMIRTKGEAGTGnVveAVr 161 (297) T 3fem_A 113 HHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVK 161 (297) T ss_dssp CCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTTTCHHHHHH T ss_pred CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH T ss_conf 2553103777744168973999998862153224679899856999999 No 220 >3cyj_A Mandelate racemase/muconate lactonizing enzyme- like protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} Probab=25.57 E-value=32 Score=14.44 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=51.2 Q ss_pred CCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH Q ss_conf 47788877331166675898811048887863288999999999999888936763302563345544542157653799 Q gi|255764463|r 32 EHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLIN 111 (337) Q Consensus 32 Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~ 111 (337) ...+...+|+ -|...+.++....+....+.+.+.+.++...+.|.+.+-+-.+.. ++ --. T Consensus 116 ~~~~Pv~~LL------Gg~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~Gf~~~K~k~g~~-------------~~-~d~ 175 (372) T 3cyj_A 116 LLGLPLADAL------PRFHAEVPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGRE-------------PE-KDP 175 (372) T ss_dssp HTTCBHHHHS------CCCCSSEEEEEECCCTTSCHHHHHHHHHHHHHTTCCEEEEECCSS-------------GG-GHH T ss_pred HCCCCHHHHC------CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-------------CH-HHH T ss_conf 6599725415------764442221013566787678999999999972666423444678-------------06-789 Q ss_pred HHHHHHHHHHC-CCEEEECCC Q ss_conf 99999997301-447986133 Q gi|255764463|r 112 EGICAIKKNIP-NIGIITDVA 131 (337) Q Consensus 112 rAIr~IK~~fp-dl~vi~DVc 131 (337) ..|+++++.+| ++.++.|.. T Consensus 176 ~~i~~ir~~~g~~~~l~vDaN 196 (372) T 3cyj_A 176 ERVRAAREAIGESVELMVDAN 196 (372) T ss_dssp HHHHHHHHHHCTTSEEEEECT T ss_pred HHHHHHHHHHCCCCEEEEECC T ss_conf 999999998298946986053 No 221 >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytoplasmid or periplasmic), drug target functions, structural genomics; 1.40A {Yersinia pestis} PDB: 1igw_A Probab=25.47 E-value=33 Score=14.43 Aligned_cols=193 Identities=18% Similarity=0.205 Sum_probs=101.8 Q ss_pred HHHHHHCCCCEEEEEECCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHC---------------------CCEEEE Q ss_conf 999998889367633025633455----4454215765379999999997301---------------------447986 Q gi|255764463|r 74 IKQVADLGIPAIAIFPNIPMDLRN----NTGSHIIDPDNLINEGICAIKKNIP---------------------NIGIIT 128 (337) Q Consensus 74 ie~~~~lGI~av~LFp~I~~~~Kd----~~GseA~n~dglv~rAIr~IK~~fp---------------------dl~vi~ 128 (337) +....+.|.+++-|=|.--...-. ..-..++-+-+=|+..++.|-+..- .+-||+ T Consensus 78 A~~~~kaGf~aiYlSG~~vaa~~~~a~~~~PD~~l~~~~~v~~~v~~I~~a~~~~d~~~~~~~~~~~~~~~~d~~~PIIA 157 (435) T 3lg3_A 78 ALQQAKAGVEAIYMSGWQVAADANTASSMYPDQSLYPVDSVPAVVKRINNSFRRADQIQWSNNIEPGSKGYTDYFLPIVA 157 (435) T ss_dssp HHHHHHHTCCSEEECHHHHHHHCCTTCSCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTSTTCCCCCCCEEE T ss_pred HHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE T ss_conf 99999839977985336552213567888887366728889999999999999999998630334455556456687688 Q ss_pred CCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--------------------CCCCCCCHHHHHHH Q ss_conf 1332710011431001365446289999999999999962897352--------------------46676779999999 Q gi|255764463|r 129 DVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA--------------------PSEMMDGRVQEIRK 188 (337) Q Consensus 129 DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA--------------------PSdMMDGrV~aIR~ 188 (337) |. +.||.|.+ .+-.+ .-.+.+|||-.|- |.+-|=.|+.|.|. T Consensus 158 Da------DtGfGg~~---------nv~r~---vk~~i~aGaAgiHiEDQ~~~~KkCGH~~GK~lVp~~E~i~kl~AAr~ 219 (435) T 3lg3_A 158 DA------EAGFGGVL---------NAFEL---MKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARL 219 (435) T ss_dssp EC------TTCSSSHH---------HHHHH---HHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHH T ss_pred EC------CCCCCCHH---------HHHHH---HHHHHHCCCEEEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHH T ss_conf 77------78898479---------99999---99999769809997156641244667788763279999999999997 Q ss_pred HHHHCCCCCCCEECHHHHHHHHHHCC---HHHHHHCCCCCCCCC--CC-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 99877885773003366643543010---167531024467777--44-3157211478898888766408987995531 Q gi|255764463|r 189 KLDSHGHINVGIMPYVAKFNSSFYGP---YRDAISTRDLLKGDK--KT-YYLDPANVQEAIREASIDIQESADMLLVKPG 262 (337) Q Consensus 189 ~Ld~~g~~~~~ImsYsaKfaS~fYgP---FRdA~~S~p~~~gdr--~s-YQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa 262 (337) +-|..|- ++.|++-.=-.+..+.-- .||. |-..|+| .. |... .....||.-+...+. |||+|-+.-. T Consensus 220 a~d~~~~-~~vIiARTDA~aa~li~s~~d~~D~----~fi~~~Rt~eG~yr~~-~G~~~aI~Ra~ay~~-~ADliw~Et~ 292 (435) T 3lg3_A 220 AADVLGV-PTLLIARTDADAADLLTSDCDPYDR----EFITGDRTAEGFFRTR-AGIEQAISRGLAYAP-YADLVWCETS 292 (435) T ss_dssp HHHHHTC-CCEEEEEECTTTCCEESCCCCGGGG----GGEEEEECTTCCEEEC-CSHHHHHHHHHHHGG-GCSEEEECCS T ss_pred HHHCCCC-CEEEEEEECHHHHHCCCCCCCCCCC----CCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHH-HCCEEEECCC T ss_conf 4651799-8699983044654212255521340----1027876867615426-874899999997133-2478863278 Q ss_pred HHHHHHHHHHH----HHCCCCEEEEECCHHHHH Q ss_conf 14589999999----624998999934618999 Q gi|255764463|r 263 LPYLDVCFRIK----EKFGLPTFAYQVSGEYAM 291 (337) Q Consensus 263 ~~yLDii~~~k----~~~~~P~~aYqVSGEYam 291 (337) .|-+..++... ..+.--+.+|+-|.-+.- T Consensus 293 ~p~~e~~~~fa~~v~~~~p~~~l~yn~SPsfnw 325 (435) T 3lg3_A 293 TPDLALAKRFADAVHAQFPGKLLAYNCSPSFNW 325 (435) T ss_dssp SCCHHHHHHHHHHHHHHSTTCEEEEECCSSSCH T ss_pred CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC T ss_conf 998999999987638965787614589999882 No 222 >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Probab=25.37 E-value=33 Score=14.42 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=38.8 Q ss_pred CCHHHHHHHHHHHHH-------HCCCCEEEEC---CCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHCCCC Q ss_conf 211478898888766-------4089879955---3114589999999624---9989999346189999999988897 Q gi|255764463|r 236 PANVQEAIREASIDI-------QESADMLLVK---PGLPYLDVCFRIKEKF---GLPTFAYQVSGEYAMIKAASLQGWI 301 (337) Q Consensus 236 ~~n~~eA~~e~~~D~-------~EGAD~lMVK---Pa~~yLDii~~~k~~~---~~P~~aYqVSGEYami~~a~~~g~~ 301 (337) ..|+.||+.-..... .+--|+++.- |+|.=+++++.+|+.. ++|+...--++.-.-...+-+.|.- T Consensus 38 a~~g~eAl~~l~~~~~~~~~~~~~~pdlvllD~~mP~~dG~el~~~ir~~~~~~~iPvI~lT~~~~~~~~~~~~~~Ga~ 116 (149) T 1k66_A 38 CITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSIS 116 (149) T ss_dssp ECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCS T ss_pred ECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCC T ss_conf 8999999999985011111122689998998088999985899999985866699958999789999999999987997 No 223 >3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} Probab=25.24 E-value=33 Score=14.40 Aligned_cols=69 Identities=23% Similarity=0.184 Sum_probs=38.1 Q ss_pred CCCCCCCHHHHHHHHHHH----HH--CCCEEEECCCCCHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 215765379999999997----30--1447986133271001143100--136544628999999999999996289735 Q gi|255764463|r 102 HIIDPDNLINEGICAIKK----NI--PNIGIITDVALDPFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADII 173 (337) Q Consensus 102 eA~n~dglv~rAIr~IK~----~f--pdl~vi~DVcLc~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv 173 (337) -++|-++.+-+|.|.++- .+ |+++|=. |-|.-|-.-+ +...-|.--.|+--=..||+.-|+|||.+| T Consensus 109 ls~dt~~~i~~A~~l~~l~~~~~i~~~nv~IKI-----PaT~eGi~A~~~L~~~GI~vN~TLiFS~~Qa~~aa~Aga~~i 183 (329) T 3m16_A 109 LSFDTQATVAKARKLIRLYQDAGIDSDRILIKI-----ASTWEGIQAAKILEAEGIHCNLTLLFHFAQAQACAEAGTTLI 183 (329) T ss_dssp GTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEE-----ECSHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEE T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-----CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHE T ss_conf 216888999999999999986178877368857-----887268999999998598122242257999998998084130 Q ss_pred EC Q ss_conf 24 Q gi|255764463|r 174 AP 175 (337) Q Consensus 174 AP 175 (337) +| T Consensus 184 Sp 185 (329) T 3m16_A 184 SP 185 (329) T ss_dssp EE T ss_pred EH T ss_conf 11 No 224 >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis, hydrolase; 1.91A {Thermoanaerobacter tengcongensis MB4} Probab=25.10 E-value=33 Score=14.39 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=74.3 Q ss_pred CCCCCCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHC Q ss_conf 6676779999999998778857-73003366643543010167531024467777443157--21147889888876640 Q gi|255764463|r 176 SEMMDGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLD--PANVQEAIREASIDIQE 252 (337) Q Consensus 176 SdMMDGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd--~~n~~eA~~e~~~D~~E 252 (337) ......-+..+-+.+.+.+..+ +.+.|++..+...+ |.. .|.. +..|... +....+ .-..- T Consensus 124 ~~~~~~~~~~v~~~l~~~~~~~~vi~~sf~~~~l~~~----~~~---~p~~---~~~~~~~~~~~~~~~------~~~~~ 187 (252) T 2pz0_A 124 IVLYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDV----KKM---APHL---KIGLLYQCGLVEPWH------MALRM 187 (252) T ss_dssp SCCCTTHHHHHHHHHHHTTCTTTEEEEESBHHHHHHH----HHH---CTTS---EEEEEECSBCSSTHH------HHHHT T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH----HHH---CCCC---EEEEEECCCCCCHHH------HHHCC T ss_conf 5557248999999999729988789995898999999----985---8885---289984156665355------54303 Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHH Q ss_conf 89879955311458999999962499899993461899999999888978899999999999772699998201899999 Q gi|255764463|r 253 SADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAAR 332 (337) Q Consensus 253 GAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~ 332 (337) +.+.+...-....-++|..+++. +++|.+|-|- .. +.+.-+.+.|+|.|+|=+-..+.+ T Consensus 188 ~~~~i~~~~~~~~~~~i~~~~~~-g~~v~~wTvn----------------~~----~~~~~l~~~GvdgI~TD~P~~l~~ 246 (252) T 2pz0_A 188 EAYSLHPFYFNIIPELVEGCKKN-GVKLFPWTVD----------------RK----EDMERMIKAGVDGIITDDPETLIN 246 (252) T ss_dssp TCSEEEEBGGGCCHHHHHHHHHT-TCEECCBCCC----------------SH----HHHHHHHHHTCSEEEESCHHHHHH T ss_pred CCCEECCCHHCCCHHHHHHHHHC-CCEEEEEECC----------------CH----HHHHHHHHCCCCEEEECCHHHHHH T ss_conf 54121320300469999999987-9999998089----------------99----999999985999999794999999 Q ss_pred HHHC Q ss_conf 9850 Q gi|255764463|r 333 ILTH 336 (337) Q Consensus 333 ~L~~ 336 (337) +|++ T Consensus 247 ~l~~ 250 (252) T 2pz0_A 247 LVRK 250 (252) T ss_dssp HHC- T ss_pred HHHH T ss_conf 9985 No 225 >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, cytoplasm, thiolase fold; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Probab=24.97 E-value=14 Score=16.84 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=38.4 Q ss_pred HCCCCCCCCCCC----CCCHHHHHHHHHHHH----HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC Q ss_conf 011431001365----446289999999999----9999628973524667677999999999877885 Q gi|255764463|r 136 TIHGHDGILCDG----EIVNDETIELISHAA----VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI 196 (337) Q Consensus 136 T~hGHcGi~~~g----~IdND~Tl~~L~k~A----l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~ 196 (337) .+-|+|.-+.|| .|-..+..+.+...- +.++.+|+| |..|.-|-+.+++++|+.+|.. T Consensus 241 ~T~~n~s~~sDGAAAvvl~S~~~a~~~g~~p~a~i~~~~~~~~d---p~~~~~~p~~A~~~al~~agl~ 306 (392) T 2vu1_A 241 VTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVD---PKVMGTGPIPASRKALERAGWK 306 (392) T ss_dssp CCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECC---GGGGGGTHHHHHHHHHHHHTCC T ss_pred EECCCCCCCCCCCEEEEEECHHHHHHCCCCCEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHHCCC T ss_conf 65466577677742899944999997699850999989998628---3650643999999999984989 No 226 >2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Probab=24.94 E-value=33 Score=14.37 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCEEECC Q ss_conf 999999997301447986133271001143100136-544628999999999999996289735246 Q gi|255764463|r 111 NEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD-GEIVNDETIELISHAAVIQADAGADIIAPS 176 (337) Q Consensus 111 ~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~-g~IdND~Tl~~L~k~Al~~A~AGaDivAPS 176 (337) .+.|++.++.=.|++|+-..|+.+|.. ..+.+ ..-..+++++.|.+.|. +.|..+|..| T Consensus 25 ~~~i~~A~~~gadlvvfPE~~l~gy~~----~~~~~~~~~~~~~~~~~l~~~A~---~~~i~iv~G~ 84 (276) T 2w1v_A 25 CSLVREAAKQGANIVSLPECFNSPYGT----TYFPDYAEKIPGESTQKLSEVAK---ESSIYLIGGS 84 (276) T ss_dssp HHHHHHHHHTTCSEEECCTTTTSCCST----TTHHHHCBCSSSHHHHHHHHHHH---HHTSEEECCC T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCH----HHHHHHHHHCCCHHHHHHHHHHH---HCCCEEEEEE T ss_conf 999999998839699988786468987----89998777678999999999998---6698799965 No 227 >2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli} Probab=24.91 E-value=20 Score=15.80 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=29.5 Q ss_pred ECCCCCCCHHHHHHHHHH----HCCCCCCCEECHHHHHHHHHHCCHHHHH Q ss_conf 246676779999999998----7788577300336664354301016753 Q gi|255764463|r 174 APSEMMDGRVQEIRKKLD----SHGHINVGIMPYVAKFNSSFYGPYRDAI 219 (337) Q Consensus 174 APSdMMDGrV~aIR~~Ld----~~g~~~~~ImsYsaKfaS~fYgPFRdA~ 219 (337) .|..--|-|..++-+-+. .+-|.+|.|= -|-|-|+.|||-|.|. T Consensus 23 q~~g~~d~rL~~LAer~GGvlLseiYdDI~ie--DApYfsAlyGpar~AI 70 (162) T 2wmm_A 23 QPGGSEDQRLNALAERFGGVLLSEIYDDVSLE--DAPYFSALYGPSRHAI 70 (162) T ss_dssp CSCCCCCTHHHHHHHHHTCEEHHHHGGGCCTT--THHHHHHHTGGGGGCE T ss_pred CCCCCCCHHHHHHHHHHCCEEHHHHHCCCCCC--HHHHHHHHHCCCCCEE T ss_conf 78998779999999984888487652456730--3577998746300025 No 228 >3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A Probab=24.70 E-value=22 Score=15.65 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=40.5 Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9999999998778857730033666435430101675310244677774431572114788988887664089879955 Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK 260 (337) Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK 260 (337) ||.|+++.|-+.|...-.=+---...-.+=.||..-|-=-+.+- -|-.--|.=..|...|++|.-.+-.+|-+++.|. T Consensus 28 rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~~GArvVARAW-~Dp~Fk~rLL~D~~aA~~e~g~~g~~~~~l~vve 105 (216) T 3hht_A 28 RAKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAW-TDPAFKQRLLEDSETVLRELGYYGLQGEHIRVVE 105 (216) T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHH-HCHHHHHHHHHCHHHHHHHHTCCSTTCSSEEEEE T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 99999999998599999999999999876349852267889875-8999999999778999998499888867089981 No 229 >1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3ij8_A* 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* ... Probab=24.62 E-value=34 Score=14.33 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=41.6 Q ss_pred CCCCCHHHHHHHHHH-HHHCCCCEEEEEECCCCCCCCCCCC---CCCCCC--------CH---HHHHHHHHHHHHCCCEE Q ss_conf 632889999999999-9988893676330256334554454---215765--------37---99999999973014479 Q gi|255764463|r 62 VMRMSIDVAVEKIKQ-VADLGIPAIAIFPNIPMDLRNNTGS---HIIDPD--------NL---INEGICAIKKNIPNIGI 126 (337) Q Consensus 62 v~R~Sid~L~~eie~-~~~lGI~av~LFp~I~~~~Kd~~Gs---eA~n~d--------gl---v~rAIr~IK~~fpdl~v 126 (337) -|-|+-..+.+++.+ +.++|+.+|=|.|+...-.-...+. +.|.+- |- ..+.|.+.++. .|.| T Consensus 16 ~f~w~~~~i~~~~~~yl~~lG~taIwi~P~~e~~~~~~~~~~~~~gY~~~dy~v~~r~Gt~~dfk~LV~~aH~~--GI~V 93 (496) T 1hx0_A 16 LFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNV--GVRI 93 (496) T ss_dssp ETTCCHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHT--TCEE T ss_pred EEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHC--CCEE T ss_conf 43077799999999999971998899394804765688999864002565764689999999999999999987--9989 Q ss_pred EECCCCCH Q ss_conf 86133271 Q gi|255764463|r 127 ITDVALDP 134 (337) Q Consensus 127 i~DVcLc~ 134 (337) |.|+-+=. T Consensus 94 IlDvV~NH 101 (496) T 1hx0_A 94 YVDAVINH 101 (496) T ss_dssp EEEECCSE T ss_pred EEEECCCC T ss_conf 98465687 No 230 >3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A Probab=24.43 E-value=22 Score=15.55 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=8.2 Q ss_pred HHHHHHHCCCCEEEEE Q ss_conf 9999998889367633 Q gi|255764463|r 73 KIKQVADLGIPAIAIF 88 (337) Q Consensus 73 eie~~~~lGI~av~LF 88 (337) .+.-+..+||+.++++ T Consensus 403 HL~La~lLGVk~IIVa 418 (1289) T 3agp_A 403 HILLGRQVGVPYIIVF 418 (1289) T ss_dssp HHHHHHHHTCSEEEEE T ss_pred HHHHHHHHCCCCEEEE T ss_conf 9999998499978999 No 231 >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionine MAD, decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Probab=24.41 E-value=34 Score=14.30 Aligned_cols=131 Identities=12% Similarity=0.201 Sum_probs=54.7 Q ss_pred HHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH Q ss_conf 99999973014479861332710011431001365446289999999999999962897352466767799999999987 Q gi|255764463|r 113 GICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192 (337) Q Consensus 113 AIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~ 192 (337) .|+.|.+. .|-|+.-+-|-|-+.|---|.-..|+ +.+.-..|-+.|..+-+|||..|--..+-.---+.|.+. T Consensus 122 ~I~~L~~~--GIPV~gHiGLtPQ~~~~~GG~k~qGk--t~~ea~~l~~dA~~le~AGaf~ivlE~Vp~~la~~It~~--- 194 (264) T 1m3u_A 122 TVQMLTER--AVPVCGHLGLTPQSVNIFGGYKVQGR--GDEAGDQLLSDALALEAAGAQLLVLECVPVELAKRITEA--- 194 (264) T ss_dssp HHHHHHHT--TCCEEEEEESCGGGHHHHTSSCCCCC--SHHHHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHH--- T ss_pred HHHHHHHC--CCEEEEECCCCCHHHHHCCCCEECCC--CHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHCC--- T ss_conf 99999987--98687632787222011488401474--779999999999999973304677531758899998626--- Q ss_pred CCCCCCCEECH-HHHHHHHHHCCHHHHHHCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 78857730033-66643543010167531024467-777443157211478898888766408 Q gi|255764463|r 193 HGHINVGIMPY-VAKFNSSFYGPYRDAISTRDLLK-GDKKTYYLDPANVQEAIREASIDIQES 253 (337) Q Consensus 193 ~g~~~~~ImsY-saKfaS~fYgPFRdA~~S~p~~~-gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337) .++++.+- |.++++.=+==+-|.+|-.+.+. .=-|.|----....+|+.+-..|+..| T Consensus 195 ---l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~~~Pkf~k~y~~~~~~~~~A~~~y~~dV~~g 254 (264) T 1m3u_A 195 ---LAIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESG 254 (264) T ss_dssp ---CSSCEEEESSCTTSSEEEECHHHHTTCSCSSCCTTCCCSSTTTSSHHHHHHHHHHHHHHT T ss_pred ---CCCEEEEECCCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf ---774189725899875798858865288989898389988613889999999999999659 No 232 >3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A* Probab=24.33 E-value=19 Score=16.04 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=47.3 Q ss_pred CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 67799999999987788577300336664354301016753102446777744315721147889888876640898799 Q gi|255764463|r 179 MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLL 258 (337) Q Consensus 179 MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM 258 (337) +..||+|+...|.+.|+.+-.-+---..+-.+-.||..-|-=-+.+- -|-.--|-=.+|...|++|.-.+..+|-+++. T Consensus 19 ~~~rv~Ale~lL~eKGli~~~~~d~~i~~~~~~~gP~~GArvVArAW-~Dp~FK~rLL~D~~aAi~elG~~g~qg~~l~V 97 (207) T 3a8g_A 19 VSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAW-TDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVA 97 (207) T ss_dssp HHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHH-HCHHHHHHHHHCHHHHHHHTTCCBTTBSEEEE T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-CCHHHHHHHHHCHHHHHHHCCCCCCCCCEEEE T ss_conf 78999999999998699999999999999976338741168999985-89899999998899999984988888753899 Q ss_pred EC Q ss_conf 55 Q gi|255764463|r 259 VK 260 (337) Q Consensus 259 VK 260 (337) |. T Consensus 98 VE 99 (207) T 3a8g_A 98 VE 99 (207) T ss_dssp EE T ss_pred EE T ss_conf 93 No 233 >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Probab=24.26 E-value=34 Score=14.28 Aligned_cols=112 Identities=17% Similarity=0.187 Sum_probs=64.1 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH--------HHHHHHHHHHHH-C-CCEEEECCCCCHH Q ss_conf 89999999999998889367633025633455445421576537--------999999999730-1-4479861332710 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL--------INEGICAIKKNI-P-NIGIITDVALDPF 135 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl--------v~rAIr~IK~~f-p-dl~vi~DVcLc~Y 135 (337) ....+.+.+..+.+|||++|-|-|+-+..... ...|++-++ -....+.+-++. . .|.||-||-+-.. T Consensus 152 ~~~gi~~kLdyLk~LGvt~I~L~Pi~~~~~~~---~~GY~~~d~~~~d~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~ 228 (618) T 3m07_A 152 TFRAAIAKLPYLAELGVTVIEVMPVAQFGGER---GWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHF 228 (618) T ss_dssp SHHHHHTTHHHHHHHTCCEEEECCCEECSSSC---CCSTTCCEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSCC T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 79899986589997599889979865268767---768651014247677899999999999752358799953113666 Q ss_pred HCCCCCCC-------C---------CCCCCCHHHHHHHHHHHHHHHHH-CCCCEE---ECCCCCCC Q ss_conf 01143100-------1---------36544628999999999999996-289735---24667677 Q gi|255764463|r 136 TIHGHDGI-------L---------CDGEIVNDETIELISHAAVIQAD-AGADII---APSEMMDG 181 (337) Q Consensus 136 T~hGHcGi-------~---------~~g~IdND~Tl~~L~k~Al~~A~-AGaDiv---APSdMMDG 181 (337) .. .|... . .+=.-+|.+..+.+.+.+.-..+ -|+|-. +-.-|.++ T Consensus 229 ~~-~~~~~~~~~~~y~~~~~~~~~g~dln~~~p~V~~~i~d~~~~Wl~eygVDGFR~D~~~~l~~~ 293 (618) T 3m07_A 229 GP-EGNYLPLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDS 293 (618) T ss_dssp CS-SSCCHHHHCGGGEEEEEEETTEEEECTTSHHHHHHHHHHHHHHHHHTTCSEEEETTGGGCCCC T ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCC T ss_conf 78-766655568653235566887872245746899989888875565317866999513323543 No 234 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=23.69 E-value=24 Score=15.34 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=12.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCH Q ss_conf 11458999999962499899993461 Q gi|255764463|r 262 GLPYLDVCFRIKEKFGLPTFAYQVSG 287 (337) Q Consensus 262 a~~yLDii~~~k~~~~~P~~aYqVSG 287 (337) ||.=+++++.+++...+|+...-..+ T Consensus 63 g~dG~e~~~~ir~~~~~PvI~lT~~~ 88 (140) T 3h5i_A 63 GMDGVQTALAIQQISELPVVFLTAHT 88 (140) T ss_dssp SCCHHHHHHHHHHHCCCCEEEEESSS T ss_pred CCCHHHHHHHHHHCCCCCEEEEECCC T ss_conf 57899999999856999899998999 No 235 >1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1 Probab=23.67 E-value=35 Score=14.21 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCH Q ss_conf 9999999999988893676330256334554454215765379999999997301447986133271 Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 (337) Q Consensus 68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~ 134 (337) .+++..++.+.+.|.+.|.+.-.+.. +..|+.+.+.|||+-|+|= |+|| T Consensus 137 ~s~~~ai~~Lk~~g~~~I~~v~~ias-----------------~~Gi~~v~~~~P~v~I~ta-~iD~ 185 (208) T 1v9s_A 137 GSASLALSLLKERGATGVKLMAILAA-----------------PEGLERIAKDHPDTEVVVA-AIDE 185 (208) T ss_dssp HHHHHHHHHHHHTTCCSCEEEEEEEC-----------------HHHHHHHHHHCTTCEEEEE-EECS T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECC-----------------HHHHHHHHHHCCCCEEEEE-EECC T ss_conf 77999999998659984699999527-----------------8999999987969789999-9678 No 236 >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Probab=23.66 E-value=35 Score=14.21 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=69.8 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC---CCCCC-CH---HHHHHHHHHHHHCCCEEEECCCCCHHHCC Q ss_conf 8999999999999888936763302563345544542---15765-37---99999999973014479861332710011 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSH---IIDPD-NL---INEGICAIKKNIPNIGIITDVALDPFTIH 138 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gse---A~n~d-gl---v~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337) ....+.+.+..+.+|||++|-|-|+.+.. ++..|-. +.||. |= .-.-|++++++ .|.||.|+-+- T Consensus 34 d~~g~~~kLdyl~~LGv~~i~l~Pi~~~~-~~~y~~~dy~~vd~~~Gt~~dfk~lV~~aH~~--gi~VilDvV~N----- 105 (424) T 2dh2_A 34 NLAGLKGRLDYLSSLKVKGLVLGPIHKNQ-KDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKK--SIRVILDLTPN----- 105 (424) T ss_dssp SHHHHHTTHHHHHHTTCSEEEECCCEEEC-TTCSTTEEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEECCTT----- T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEEEC----- T ss_conf 99999985179987599989989987288-89988768742185569999999999999862--88899988001----- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC--CC---CHHHHHHHHHHHCC Q ss_conf 4310013654462899999999999999628973524667--67---79999999998778 Q gi|255764463|r 139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEM--MD---GRVQEIRKKLDSHG 194 (337) Q Consensus 139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM--MD---GrV~aIR~~Ld~~g 194 (337) |+|--.-....+...-+.......-..+-|+|..=...+ +. .-+..+|+.+++-+ T Consensus 106 -Ht~~~~w~~~~~~~~~~~~~d~~~~~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~ 165 (424) T 2dh2_A 106 -YRGENSWFSTQVDTVATKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAEWQNITKGFS 165 (424) T ss_dssp -TTSSSTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEECCGGGSTTHHHHHHHHHHHHHHHC T ss_pred -CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHC T ss_conf -367776311212223310123766511268874002201111121578999999887208 No 237 >3i6e_A Muconate cycloisomerase I; structural GENOMICS,NYSGXRC,TARGER 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Probab=23.55 E-value=35 Score=14.19 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=28.1 Q ss_pred CCCCEEEECCC----HHHHHHHHHHHHHCCCCEEEEECC----HHHHHHHHHHHCC Q ss_conf 08987995531----145899999996249989999346----1899999999888 Q gi|255764463|r 252 ESADMLLVKPG----LPYLDVCFRIKEKFGLPTFAYQVS----GEYAMIKAASLQG 299 (337) Q Consensus 252 EGAD~lMVKPa----~~yLDii~~~k~~~~~P~~aYqVS----GEYami~~a~~~g 299 (337) ..+|++.+||. ++=.=-|..+.+..++++..-+.. |-.++++.++... T Consensus 265 ~~~d~v~~d~~~~GGit~~~ki~~~A~~~gi~~~~~~~~~~~i~~~a~~hlaaa~~ 320 (385) T 3i6e_A 265 GICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATP 320 (385) T ss_dssp TCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHTCT T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCC T ss_conf 11444224645578889999999999986990887685305999999999998688 No 238 >1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A Probab=23.26 E-value=15 Score=16.79 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=44.9 Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 99999999987788577300336664354301016753102-----4467777443157211478898888766408987 Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR-----DLLKGDKKTYYLDPANVQEAIREASIDIQESADM 256 (337) Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~-----p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~ 256 (337) ||+|+++.|-+.|+....=+---...-.+=.||..-|-=-+ |.|+ +-=..|...|++|.-.+..+|..+ T Consensus 19 Rv~Ale~lLieKGli~~~~i~~~ie~~~~~vgP~~GArvVArAW~Dp~Fk------~~Ll~D~~~A~~e~G~~~~~~~~l 92 (203) T 1ugp_A 19 RVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFK------KRLLADGTEACKELGIGGLQGEDM 92 (203) T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHH------HHHHHCHHHHHHTTTCCCTTCSEE T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHH------HHHHHCHHHHHHHCCCCCCCCCCE T ss_conf 99999999998599999999999999864349865311356864898999------999988899999859988877737 Q ss_pred EEEC Q ss_conf 9955 Q gi|255764463|r 257 LLVK 260 (337) Q Consensus 257 lMVK 260 (337) +.|. T Consensus 93 ~vve 96 (203) T 1ugp_A 93 MWVE 96 (203) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9994 No 239 >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Probab=23.11 E-value=36 Score=14.14 Aligned_cols=13 Identities=54% Similarity=0.567 Sum_probs=5.8 Q ss_pred HHHHHHHCCCCEE Q ss_conf 9999996289735 Q gi|255764463|r 161 AAVIQADAGADII 173 (337) Q Consensus 161 ~Al~~A~AGaDiv 173 (337) +|..+++||||.| T Consensus 297 ~a~~L~~~gad~i 309 (503) T 1me8_A 297 GFRYLADAGADFI 309 (503) T ss_dssp HHHHHHHHTCSEE T ss_pred HHHHHHHHCCCEE T ss_conf 9999998187868 No 240 >3l12_A Putative glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi} Probab=23.04 E-value=36 Score=14.13 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=46.2 Q ss_pred HCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHH Q ss_conf 40898799553114589999999624998999934618999999998889788999999999997726999982018999 Q gi|255764463|r 251 QESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEA 330 (337) Q Consensus 251 ~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~ 330 (337) .-|++.+....-...-..|+.+++ .+++|.+|-|--+ |.+.-+.+.|+|.|||=+---+ T Consensus 243 ~~~~~~~~~~~~~~~~~~v~~~~~-~G~~V~~wTVn~~--------------------~~~~~l~~~GVdgIiTD~P~~~ 301 (313) T 3l12_A 243 SAGGQLWCPYFLDVTPELVAEAHD-LGLIVLTWTVNEP--------------------EDIRRMATTGVDGIVTDYPGRT 301 (313) T ss_dssp HHTCSEEEEBGGGCCHHHHHHHHH-TTCEEEEBCCCSH--------------------HHHHHHHHHTCSEEEESCHHHH T ss_pred HCCCCCCCCCHHCCCHHHHHHHHH-CCCEEEEECCCCH--------------------HHHHHHHHCCCCEEEECCHHHH T ss_conf 517732144241089999999998-7998999889999--------------------9999998659999997949999 Q ss_pred HHHHHC Q ss_conf 999850 Q gi|255764463|r 331 ARILTH 336 (337) Q Consensus 331 a~~L~~ 336 (337) .++|++ T Consensus 302 ~~~l~~ 307 (313) T 3l12_A 302 QRILID 307 (313) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999997 No 241 >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Probab=22.93 E-value=36 Score=14.11 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=40.6 Q ss_pred CCCC-CC-CHHHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 4315-72-11478898888766408987995---53114589999999624-99899993461899999999888978 Q gi|255764463|r 231 TYYL-DP-ANVQEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 231 sYQm-d~-~n~~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) .|+. +. .|..||+.... .....-|++.. =|.+-=+++++.+|+.. +.|+..+...++-.+...+-+.|..+ T Consensus 60 g~~vv~~a~~g~eAl~~~~-~~~p~~dlvilD~~mP~~dG~e~~~~ir~~~~~~piI~lT~~~~~~~~~~a~~~Ga~~ 136 (157) T 3hzh_A 60 GFNIIDTAADGEEAVIKYK-NHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKT 136 (157) T ss_dssp TCEEEEEESSHHHHHHHHH-HHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSE T ss_pred CCEEEEEECCHHHHHHHHH-HCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE T ss_conf 9989999899999999998-4198918999856899997899999999719999768763279999999999859988 No 242 >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Probab=22.88 E-value=36 Score=14.11 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=47.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC--------CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCC Q ss_conf 4431572114788988887664089879955--------3114589999999624-998999934618999999998889 Q gi|255764463|r 230 KTYYLDPANVQEAIREASIDIQESADMLLVK--------PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGW 300 (337) Q Consensus 230 ~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK--------Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~ 300 (337) ..|+...++..+...+... ++--|.+++- +|+.-+++++.+|+.. .+|+...--.++......|-+.|. T Consensus 26 ~g~~v~~a~~~~~al~~l~--~~~~dlillDl~mP~~~~~G~dGl~~l~~ir~~~~~ipvI~lT~~~~~~~~~~a~~~Ga 103 (140) T 2qr3_A 26 HFSKVITLSSPVSLSTVLR--EENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGA 103 (140) T ss_dssp TSSEEEEECCHHHHHHHHH--HSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTC T ss_pred CCCEEEEECCHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC T ss_conf 8999999899999999997--27999999916887777677519999999998689982899978999999999998699 Q ss_pred CC Q ss_conf 78 Q gi|255764463|r 301 IN 302 (337) Q Consensus 301 ~d 302 (337) .| T Consensus 104 ~d 105 (140) T 2qr3_A 104 SD 105 (140) T ss_dssp CE T ss_pred CE T ss_conf 78 No 243 >2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Probab=22.80 E-value=36 Score=14.10 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=46.9 Q ss_pred CCCCCCCCCHHHHHHHHCCC-CCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 58563128988999863477-888773311666758988110488878632889999999999998889367633 Q gi|255764463|r 15 RRMRRNRKSNWIREMVREHR-LSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIF 88 (337) Q Consensus 15 ~R~RRlR~~~~iR~Lv~Et~-Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LF 88 (337) +|==|++-|+++-.-+.... +.....|.|+||-|..-...+- .=+-..+|=.+.|.+.-+++.++|++-+++. T Consensus 36 RrDLRl~DN~AL~~A~~~a~~~~~~~~V~pvfi~dp~~~~~~~-~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~ 109 (543) T 2wq7_A 36 RKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ-VGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 109 (543) T ss_dssp SSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTT-SCHHHHHHHHHHHHHHHHHHHHTTCCCEEEE T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9995363549999999860201589729999998915435799-7899999999999999999997799779997 No 244 >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Probab=22.72 E-value=37 Score=14.09 Aligned_cols=123 Identities=19% Similarity=0.239 Sum_probs=73.4 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH------------HHHHHHHHHHHHCCCEEEECCCCC Q ss_conf 89999999999998889367633025633455445421576537------------999999999730144798613327 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL------------INEGICAIKKNIPNIGIITDVALD 133 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl------------v~rAIr~IK~~fpdl~vi~DVcLc 133 (337) +...+.+.+..+.+|||++|-|-|+-+.... ....|++-++ ..+.|.++.++ .|.||-||-+- T Consensus 142 ~~~g~~~~Ldylk~LGvt~v~L~Pv~~~~~~---~~wGY~~~~y~a~~~~~G~~~efk~lV~~~H~~--Gi~VilDvV~N 216 (602) T 2bhu_A 142 TYRAAAEKLPYLKELGVTAIQVMPLAAFDGQ---RGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRL--GLGVFLDVVYN 216 (602) T ss_dssp SHHHHHHTHHHHHHHTCCEEEECCCEECSSS---CCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEECCS T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCC---CCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCC--CCEEECCCCCC T ss_conf 8878876335797769749998986647666---888876414565788899999999999984616--81896144567 Q ss_pred HHHCC-----------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEE---ECCCCCC----CHHHHHHH Q ss_conf 10011-----------------43100136544628999999999999996-289735---2466767----79999999 Q gi|255764463|r 134 PFTIH-----------------GHDGILCDGEIVNDETIELISHAAVIQAD-AGADII---APSEMMD----GRVQEIRK 188 (337) Q Consensus 134 ~YT~h-----------------GHcGi~~~g~IdND~Tl~~L~k~Al~~A~-AGaDiv---APSdMMD----GrV~aIR~ 188 (337) ..... ..||- +-...|.++.+.+...+.-.++ -|+|-. +-+-|.+ .-...+++ T Consensus 217 H~~~~~~~~~~~~~~~~~~~~~~~~g~--~ln~~~~~vr~~i~d~~~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~l~~ 294 (602) T 2bhu_A 217 HFGPSGNYLSSYAPSYFTDRFSSAWGM--GLDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDDSETHILTELAQ 294 (602) T ss_dssp CCCSSSCCHHHHCGGGEEEEEECSSSE--EECTTSHHHHHHHHHHHHHHHHHHCCSEEEETTGGGCCCCSSSCHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHEEEEECCCEEEECCHHHCCCCCCCCHHHHHHH T ss_conf 688877644457875334566668788--627588899999987774014610454798625653204421101567889 Q ss_pred HHHHCCC Q ss_conf 9987788 Q gi|255764463|r 189 KLDSHGH 195 (337) Q Consensus 189 ~Ld~~g~ 195 (337) .+++.+- T Consensus 295 ~i~~~~~ 301 (602) T 2bhu_A 295 EIHELGG 301 (602) T ss_dssp HHHTTCS T ss_pred HHHHHCC T ss_conf 8875278 No 245 >1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Probab=22.64 E-value=37 Score=14.07 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999730144798613327100114310013654462899999999999999 Q gi|255764463|r 111 NEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQA 166 (337) Q Consensus 111 ~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A 166 (337) .+.++.+-.++|++.|+.. -|...|=+- +++|....+++=...+.+++-..+ T Consensus 22 ~~~~~~~~~~~pnl~vl~~---~~~l~~~lT-iLRd~~T~~~~Fr~~~~ri~~lL~ 73 (243) T 1bd3_D 22 ESILQDIITRFPNVVLMKQ---TAQLRAMMT-IIRDKETPKEEFVFYADRLIRLLI 73 (243) T ss_dssp HHHHHHHHHHCTTEEECCC---CHHHHHHHH-HHHCTTCCHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHCCCEEEECC---CHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 1467767740898799389---989999999-976789987999999999999999 No 246 >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Probab=22.62 E-value=37 Score=14.07 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=29.1 Q ss_pred HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH Q ss_conf 87664089879955311458999999962499899993461899999999888978899999999999772699998201 Q gi|255764463|r 247 SIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF 326 (337) Q Consensus 247 ~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~ 326 (337) ..+..+|||+|+.--.. ...+ ...|.+.|....+ |...-.+++|+.-+|-++ T Consensus 220 l~~~~~~~d~LIhE~t~---------------------~~~~---~~~a~~~~Hst~~----~a~~~a~~~~~k~lvLtH 271 (306) T 2cbn_A 220 ALDLAKGVDVMVHEATL---------------------DITM---EAKANSRGHSSTR----QAATLAREAGVGKLIITH 271 (306) T ss_dssp HHHHHTTCSEEEEECCB---------------------CGGG---HHHHHHTTCCBHH----HHHHHHHHHTCSEEEEEC T ss_pred HHHHHCCCCEEEEECCC---------------------CHHH---HHCCCCCCCCCHH----HHHHHHHHCCCCEEEEEC T ss_conf 65543156457773333---------------------5244---5154678999999----999999984999899989 No 247 >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Probab=21.92 E-value=38 Score=13.98 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=46.2 Q ss_pred CCCCCCCHH-HHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 431572114-78898888766408987995---53114589999999624-99899993461899999999888978 Q gi|255764463|r 231 TYYLDPANV-QEAIREASIDIQESADMLLV---KPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 231 sYQmd~~n~-~eA~~e~~~D~~EGAD~lMV---KPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) .||...++. .+|+.... ++--|++.+ =|+|.=+++++.+|+.. ..|+...-..++-.....|.+.|..| T Consensus 27 g~~v~~a~~~~~al~~~~---~~~~dlvi~D~~mP~~~G~~ll~~ir~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~d 100 (126) T 1dbw_A 27 GFAVKMHQSAEAFLAFAP---DVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVD 100 (126) T ss_dssp TCEEEEESCHHHHHHHGG---GCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSE T ss_pred CCEEEEECCHHHHHHHHH---HCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCE T ss_conf 999999899999999976---37998797103688888299999999619998399996889999999999879988 No 248 >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} Probab=21.32 E-value=39 Score=13.90 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=22.5 Q ss_pred CCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 8786328899---999999999988893676330256 Q gi|255764463|r 59 MPDVMRMSID---VAVEKIKQVADLGIPAIAIFPNIP 92 (337) Q Consensus 59 MPGv~R~Sid---~L~~eie~~~~lGI~av~LFp~I~ 92 (337) -.|-|-|+-+ ...+.++.+.++|...| .|+... T Consensus 64 r~g~F~y~~~e~~~m~~dI~~~~~~Gadgi-VfG~L~ 99 (224) T 2bdq_A 64 RGGNFVYNDLELRIMEEDILRAVELESDAL-VLGILT 99 (224) T ss_dssp SSSCSCCCHHHHHHHHHHHHHHHHTTCSEE-EECCBC T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEEEC T ss_conf 899867688999999999999998199802-798776 No 249 >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} PDB: 3o6d_A* Probab=21.25 E-value=39 Score=13.89 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=60.3 Q ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC---CCCCCCCCCCCC Q ss_conf 99999996289735246676779999999998778857730033666435430101675310244---677774431572 Q gi|255764463|r 160 HAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL---LKGDKKTYYLDP 236 (337) Q Consensus 160 k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~---~~gdr~sYQmd~ 236 (337) ..--.+-++|. --|=-||--...|..+.+- |.. .|==|..+||.+|...+.....++-+ +..+++.++-.+ T Consensus 115 ~~i~~lk~~gI---rVSLFIDPd~~~i~~A~~~-Gad--~VElhTG~YA~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (260) T 3o6c_A 115 QSIEKLQNANI---EVSLFINPSLEDIEKSKIL-KAQ--FIELHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQF 188 (260) T ss_dssp HHHHHHHHTTC---EEEEEECSCHHHHHHHHHT-TCS--EEEECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHH T ss_pred HHHHHHHHCCC---EEEEEECCCHHHHHHHHHC-CCC--EEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99998653496---2899968998999998427-989--89983456664420332211001333322212245667799 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 11478898888766408987995531145899999996249989999346189999999988897889999999999977 Q gi|255764463|r 237 ANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKR 316 (337) Q Consensus 237 ~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kR 316 (337) ...-+.+.++..-..+=-=-|=---++.|-.+ ..+. .+|- ...||=-.|.|--|-..| .++++.+-+..+|| T Consensus 189 ~~el~~i~~aa~~A~~~GL~VnAGHgLn~~Nl-~~l~---~ip~-i~EvsIGHaiI~eAl~~G---l~~aV~~~~~ii~r 260 (260) T 3o6c_A 189 EKELQNLELCAKKGLELGLKVAAGHGLNYKNV-KPVV---KIKE-ICELNIGQSIVARSVFTG---LQNAILEMKELIKR 260 (260) T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECTTCCTTTT-HHHH---TCTT-CCEEEECHHHHHHHHHHC---HHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH-HHHH---CCCC-CEEEECCHHHHHHHHHHH---HHHHHHHHHHHHCC T ss_conf 99999999999999876985636899887778-9983---5899-758845699999999973---99999999999659 No 250 >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein structure initiative; 2.70A {Polaromonas SP} Probab=21.16 E-value=39 Score=13.88 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=37.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHC Q ss_conf 786328899999999999988893676330256334554454215765379999999997301-447986133271001 Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTI 137 (337) Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~ 137 (337) ....-.+.+.+.++++++.+.|.+++-+-.+.+. . .=...|+++++.++ ++.++.|. -+.||. T Consensus 179 ~~~~~~~~e~~~~~~~~~~~~Gf~~~KiKvg~~~-~-------------~D~~~v~~iR~~~g~~~~l~vDa-N~~w~~ 242 (428) T 3bjs_A 179 IALGYQPKESLAEEAQEYIARGYKALKLRIGDAA-R-------------VDIERVRHVRKVLGDEVDILTDA-NTAYTM 242 (428) T ss_dssp SCSCSCCHHHHHHHHHHHHHHTCSEEEEECCSCH-H-------------HHHHHHHHHHHHHCTTSEEEEEC-TTCCCH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCH-H-------------HHHHHHHHHHHHCCCCCEEEEEC-CCCCCH T ss_conf 3345589999999999998639974896179871-8-------------89999999999719998299988-998656 No 251 >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Probab=21.10 E-value=39 Score=13.87 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHH-CCCCEEEEEE Q ss_conf 999999999998-8893676330 Q gi|255764463|r 68 DVAVEKIKQVAD-LGIPAIAIFP 89 (337) Q Consensus 68 d~L~~eie~~~~-lGI~av~LFp 89 (337) ..+.+.+++..+ .++. ++++| T Consensus 22 ~~l~~~~~~~~~~~~~~-i~vap 43 (226) T 1w0m_A 22 VELAKAAERAARELGVN-IVVAP 43 (226) T ss_dssp HHHHHHHHHHHHHHTCE-EEEEC T ss_pred HHHHHHHHHHCCCCCCE-EEEEC T ss_conf 99999998623546988-99989 No 252 >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, enolase superfamily, TIM barrel; 1.90A {Polaromonas SP} PDB: 3cb3_A* Probab=20.94 E-value=40 Score=13.85 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=19.1 Q ss_pred HCCCCEEEECCC----HHHHHHHHHHHHHCCCCEEEEECCHHH Q ss_conf 408987995531----145899999996249989999346189 Q gi|255764463|r 251 QESADMLLVKPG----LPYLDVCFRIKEKFGLPTFAYQVSGEY 289 (337) Q Consensus 251 ~EGAD~lMVKPa----~~yLDii~~~k~~~~~P~~aYqVSGEY 289 (337) ...+|++++||. +.-.=-|.++.+..++|+.. +++.+. T Consensus 279 ~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~v~~-h~~~~a 320 (393) T 2og9_A 279 HRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAP-HFAMEL 320 (393) T ss_dssp TTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECC-CSCHHH T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEE-CHHHHH T ss_conf 478765743565568799999999999985998975-649999 No 253 >1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4 Probab=20.85 E-value=40 Score=13.84 Aligned_cols=70 Identities=31% Similarity=0.423 Sum_probs=44.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-----CCCC----C--------------HHHHHHHHHHHCCCC-CC Q ss_conf 0136544628999999999999996289735246-----6767----7--------------999999999877885-77 Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPS-----EMMD----G--------------RVQEIRKKLDSHGHI-NV 198 (337) Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-----dMMD----G--------------rV~aIR~~Ld~~g~~-~~ 198 (337) |+..|.|.-| ..||..-|..|||+||-= .-.| | ++.+.|++||..+-+ .- T Consensus 156 IVAtG~i~eD------i~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT~EG~GGt~aTqenfR~mRkALD~v~~EvGR 229 (516) T 1xrs_A 156 IVATGNIYED------ITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATTEGFGGTYATQENFRLMREALDKVGAEVGK 229 (516) T ss_dssp EECCSCHHHH------HHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCSCCTTSCCCCHHHHHHHHHHHHHHHHHHTS T ss_pred EEECCCHHHH------HHHHHHHHHCCCCEEEEHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9833854878------9999999864897898635123555324767898787678400489999999998889998487 Q ss_pred CEECHHHHHHHHHHCCHHHHHH Q ss_conf 3003366643543010167531 Q gi|255764463|r 199 GIMPYVAKFNSSFYGPYRDAIS 220 (337) Q Consensus 199 ~ImsYsaKfaS~fYgPFRdA~~ 220 (337) .|-= .-|+|.+-+|==-+.+ T Consensus 230 yI~~--~nY~SGlcmPEIA~m~ 249 (516) T 1xrs_A 230 YIRL--CNYCSGLCMPEIAAMG 249 (516) T ss_dssp CCEE--EEECCSTTHHHHHHHH T ss_pred EEEE--ECCCCCCCCHHHHHHH T ss_conf 1344--1213113439999999 No 254 >3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} Probab=20.80 E-value=40 Score=13.83 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH-HCCC Q ss_conf 999999999998889--36763302563345544542157653799999999973014479861332710-0114 Q gi|255764463|r 68 DVAVEKIKQVADLGI--PAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF-TIHG 139 (337) Q Consensus 68 d~L~~eie~~~~lGI--~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y-T~hG 139 (337) .+++..++.+.+.|+ +.|.+.-.+... .+|+.+.++||++-|+|= |+|+- +++| T Consensus 143 ~s~~~ai~~L~~~Gv~~~~I~~v~~iaa~-----------------~Gi~~i~~~~P~v~I~ta-~iD~~Ln~~~ 199 (217) T 3dmp_A 143 YSAAHAIDVLKRRGVPGERLMFLALVAAP-----------------EGVQVFQDAHPDVKLYVA-SLDSHLDDHA 199 (217) T ss_dssp HHHHHHHHHHHTTTCCGGGEEEECSEECH-----------------HHHHHHHHHCTTCEEEES-EECCEECTTS T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEECH-----------------HHHHHHHHHCCCCEEEEE-EECCCCCCCC T ss_conf 57999999999849984528999987547-----------------999999987939789999-7067768997 No 255 >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Probab=20.56 E-value=40 Score=13.80 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=67.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---CCCCCCCCC--------CC-CH---HHHHHHHHHHHHCCCEEEECC Q ss_conf 8999999999999888936763302563345---544542157--------65-37---999999999730144798613 Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLR---NNTGSHIID--------PD-NL---INEGICAIKKNIPNIGIITDV 130 (337) Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~K---d~~GseA~n--------~d-gl---v~rAIr~IK~~fpdl~vi~DV 130 (337) .+..+.+.+..+.+||+++|-|=|+.+.... +..+.+.|+ +. |= ..+.|++++++ .|-||.|+ T Consensus 41 dl~gi~~kLdylk~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~df~~lv~~~h~~--Gi~VilD~ 118 (484) T 2aaa_A 41 SWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHAR--GMYLMVDV 118 (484) T ss_dssp CHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTT--TCEEEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEE T ss_conf 8999998379998689988994987417765677888788867445776184559999999999999647--86899964 Q ss_pred CCCHH-----------------HC----CCCCCCCC--------------------CCCCCHHHHHHHHHHHHHHHH-HC Q ss_conf 32710-----------------01----14310013--------------------654462899999999999999-62 Q gi|255764463|r 131 ALDPF-----------------TI----HGHDGILC--------------------DGEIVNDETIELISHAAVIQA-DA 168 (337) Q Consensus 131 cLc~Y-----------------T~----hGHcGi~~--------------------~g~IdND~Tl~~L~k~Al~~A-~A 168 (337) -+-.- .. |-+|.+.. |=.-.|.+..+.+.+...-.. +. T Consensus 119 V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~lpdln~~n~~v~~~~~~~~~~w~~~~ 198 (484) T 2aaa_A 119 VPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNY 198 (484) T ss_dssp CCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHHHHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 35665455677645511148866555557667766543346777653467566663103485589999987544004301 Q ss_pred CCCEE---ECCCCCCCHHHHHHHHH Q ss_conf 89735---24667677999999999 Q gi|255764463|r 169 GADII---APSEMMDGRVQEIRKKL 190 (337) Q Consensus 169 GaDiv---APSdMMDGrV~aIR~~L 190 (337) |+|-. |.-.|=..-...++++- T Consensus 199 gvDGfR~Daa~~i~~~f~~~~~~~~ 223 (484) T 2aaa_A 199 SVDGLRIDSVLEVQPDFFPGYNKAS 223 (484) T ss_dssp TCCEEEESCSTTSCGGGHHHHHHHH T ss_pred CCCEEEECCCCCCCHHHHHHHHHCC T ss_conf 5526886100026588887644245 No 256 >3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans} Probab=20.53 E-value=40 Score=13.79 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=37.6 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCC Q ss_conf 999999888936763302563345544542157653--799999999973014479861332710011431001365446 Q gi|255764463|r 73 KIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN--LINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIV 150 (337) Q Consensus 73 eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg--lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~Id 150 (337) .++.+.++|+++|=| |+--...-...+...+|+.+ .+.+.|..+++. .|.||.|+ |.++|-.+...-+ T Consensus 50 dI~~ik~~GfN~vRi-pisW~~~~~~~~~~~in~~~l~~~d~vId~a~~~--Gi~viLdl-------H~~~~w~~~~~~~ 119 (515) T 3icg_A 50 MINKIKEAGFNTLRL-PVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDN--DMYVIINL-------HHENEWLKPFYAN 119 (515) T ss_dssp HHHHHHHHTCCEEEE-CCCCTTSBCCTTTCCBCHHHHHHHHHHHHHHHTT--TCEEEEEC-------CSCTTTCCCSGGG T ss_pred HHHHHHHCCCCEEEE-EEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEC-------CCCCCCCCCCCCC T ss_conf 999999879988997-0128980788888744999999999999999978--99999967-------7788555688889 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 28999999999999996 Q gi|255764463|r 151 NDETIELISHAAVIQAD 167 (337) Q Consensus 151 ND~Tl~~L~k~Al~~A~ 167 (337) .+.+.+.+.+.....|+ T Consensus 120 ~~~~~~~~~~~w~~vA~ 136 (515) T 3icg_A 120 EAQVKAQLTKVWTQIAN 136 (515) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHH T ss_conf 77899999999999999 No 257 >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} Probab=20.49 E-value=41 Score=13.79 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=80.9 Q ss_pred HHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHH---HHHHHHHHHCCCCEEEEEECCCCCCCCCCC Q ss_conf 88999863477888773311666758988110488878632889999---999999998889367633025633455445 Q gi|255764463|r 24 NWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVA---VEKIKQVADLGIPAIAIFPNIPMDLRNNTG 100 (337) Q Consensus 24 ~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L---~~eie~~~~lGI~av~LFp~I~~~~Kd~~G 100 (337) ..++...+... .|++|.=.. =+|-|.||-+++ .+.++.+.++|+..| +||...++. . T Consensus 79 gli~~~~~~~~-------iPV~vMIRP--------R~GdF~Ys~~E~~~M~~dI~~~k~~Ga~Gv-VfG~L~~dg-~--- 138 (287) T 3iwp_A 79 GVLQVVKQSVQ-------IPVFVMIRP--------RGGDFLYSDREIEVMKADIRLAKLYGADGL-VFGALTEDG-H--- 138 (287) T ss_dssp HHHHHHHTTCC-------SCEEEECCS--------SSSCSCCCHHHHHHHHHHHHHHHHTTCSEE-EECCBCTTS-C--- T ss_pred HHHHHHHHHCC-------CCEEEEECC--------CCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEEEECCCC-C--- T ss_conf 99999998679-------975999678--------888888899999999999999998699978-995568999-8--- Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEE----CCCCCHH------HCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHH Q ss_conf 4215765379999999997301447986----1332710------011431001365----4462899999999999999 Q gi|255764463|r 101 SHIIDPDNLINEGICAIKKNIPNIGIIT----DVALDPF------TIHGHDGILCDG----EIVNDETIELISHAAVIQA 166 (337) Q Consensus 101 seA~n~dglv~rAIr~IK~~fpdl~vi~----DVcLc~Y------T~hGHcGi~~~g----~IdND~Tl~~L~k~Al~~A 166 (337) .|. .+++.+-+..+.+-+.- |.|-+|. -..|-..|+.-| -.++-+.|..|.++| T Consensus 139 ---ID~-----~~~~~Lv~~a~~l~vTFHRAfD~~~d~~~ale~Li~lG~~rILTSGg~~~A~~G~~~L~~Lv~~a---- 206 (287) T 3iwp_A 139 ---IDK-----ELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQA---- 206 (287) T ss_dssp ---BCH-----HHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTTSSSTTTTHHHHHHHHHHH---- T ss_pred ---CCH-----HHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC---- T ss_conf ---499-----99999999828985697400564089999999999739885676888566888689999999973---- Q ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 6289735246676779999999998778857 Q gi|255764463|r 167 DAGADIIAPSEMMDGRVQEIRKKLDSHGHIN 197 (337) Q Consensus 167 ~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~ 197 (337) .-.-.|++=+.--...+..|- ...|+.. T Consensus 207 ~~~I~Im~GGGV~~~Ni~~l~---~~~G~~e 234 (287) T 3iwp_A 207 KGRIVVMPGGGITDRNLQRIL---EGSGATE 234 (287) T ss_dssp TTSSEEEECTTCCTTTHHHHH---HHHCCSE T ss_pred CCCCEEEECCCCCHHHHHHHH---HHCCCCE T ss_conf 899469856988989999999---9719918 No 258 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=20.43 E-value=41 Score=13.78 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=48.9 Q ss_pred CCC-C-CCHHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 315-7-2114788988887664089879955---3114589999999624-99899993461899999999888978 Q gi|255764463|r 232 YYL-D-PANVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337) Q Consensus 232 YQm-d-~~n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337) |+. . ..|..||+.... ++--|++.+- |++.=+++++++++.. ..|+...-..++......|.+.|..+ T Consensus 27 ~~v~~~a~~g~~al~~~~---~~~~dlii~D~~mP~~~G~e~~~~ir~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~ 100 (120) T 1tmy_A 27 YEVAGEATNGREAVEKYK---ELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKD 100 (120) T ss_dssp CEEEEEESSHHHHHHHHH---HHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCE T ss_pred CEEEEEECCHHHHHHHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCE T ss_conf 989999899999999998---36999999963689997999999999758799789997428999999999869989 No 259 >1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco/reaction intermediate); HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A Probab=20.36 E-value=41 Score=13.77 Aligned_cols=192 Identities=12% Similarity=0.108 Sum_probs=101.9 Q ss_pred CCCCCHHHHHHHHHHHHHC--CC--EEEECCCCCH-HH------CCCCCCCCC-----CC----CCC---HHHHHHHHHH Q ss_conf 5765379999999997301--44--7986133271-00------114310013-----65----446---2899999999 Q gi|255764463|r 104 IDPDNLINEGICAIKKNIP--NI--GIITDVALDP-FT------IHGHDGILC-----DG----EIV---NDETIELISH 160 (337) Q Consensus 104 ~n~dglv~rAIr~IK~~fp--dl--~vi~DVcLc~-YT------~hGHcGi~~-----~g----~Id---ND~Tl~~L~k 160 (337) |.++++.+-....+-+.|. .+ +-+.|+-|-+ |. .+|-.|+=+ +. .|. --.|-+.+++ T Consensus 117 Fe~gsv~nlltsI~GNvfg~k~l~~lRL~Dl~lP~~~~~~F~GP~fGI~G~R~~lgv~~RPLlgtiiKPklGLsp~~~a~ 196 (493) T 1bwv_A 117 FEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGR 196 (493) T ss_dssp SCTTCHHHHHHHHTSSGGGCTTEEEEEEEEEECCHHHHTTSCCCSSHHHHHHHHHTCCSSCEEECBCSSSSCCCHHHHHH T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHH T ss_conf 57774899999996142564214525898861899999628999987445588747888722431247766789899999 Q ss_pred HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHH- Q ss_conf 9999996289735246676779999999998778857730033666435430101675310244677774431572114- Q gi|255764463|r 161 AAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANV- 239 (337) Q Consensus 161 ~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~- 239 (337) ++..++..|.|+|- |.++..+-+-+.+.-.+.-+ .+|+.-+..-.|-++.|-.|.... T Consensus 197 ~~ye~~~GGlDfIK----------------DDE~l~dqpf~p~~eRv~~~-----~eai~~A~~eTG~~k~ya~NiTa~~ 255 (493) T 1bwv_A 197 VVYEALKGGLDFVK----------------DDENINSQPFMRWRERYLFT-----MEAVNKASAATGEVKGHYLNVTAAT 255 (493) T ss_dssp HHHHHHHHTCSEEE----------------CCTTCSSBTTBCHHHHHHHH-----HHHHHHHHHHHTSCCEEEEECCCSS T ss_pred HHHHHHHCCCCEEE----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCEEEEEECCCCCC T ss_conf 99999726886642----------------67566788788789999999-----9999999997397138983378974 Q ss_pred -HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf -788988887664089879955311458999999962---4998999934618999999998889788999999999997 Q gi|255764463|r 240 -QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK---FGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFK 315 (337) Q Consensus 240 -~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~---~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~k 315 (337) .|-++....-.+.|+.++|+-. ..=++.++.++.. ..+|+. +|-+|--++-. ....| ++.. ++ ..-.+ T Consensus 256 ~eem~~ra~~a~~~G~~~lm~~~-~~G~~al~~La~~~~~~~l~lH-~HrAg~~~~~r-~~~~G-is~~-vl---~Kl~R 327 (493) T 1bwv_A 256 MEEMYARANFAKELGSVIIMIDL-VIGYTAIQTMAKWARDNDMILH-LHRAGNSTYSR-QKNHG-MNFR-VI---CKWMR 327 (493) T ss_dssp HHHHHHHHHHHHHTTCSEEEEEG-GGCHHHHHHHHHHHHHTTCEEE-EECTTTHHHHS-CTTSE-ECHH-HH---HHHHH T ss_pred HHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHHHHCCCEEC-CCCCCCCCCCC-CCCCC-CCHH-HH---HHHHH T ss_conf 99999999999966976999545-3045999999986443485330-24042641138-88887-0699-99---99999 Q ss_pred HHCCCEEEE Q ss_conf 726999982 Q gi|255764463|r 316 RAGCDGIFT 324 (337) Q Consensus 316 RAGAd~Iit 324 (337) -||||.|++ T Consensus 328 LaGaD~ih~ 336 (493) T 1bwv_A 328 MAGVDHIHA 336 (493) T ss_dssp HHTCSEEEC T ss_pred HCCCCCCCC T ss_conf 759870104 No 260 >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa PAO1} Probab=20.03 E-value=41 Score=13.72 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=43.7 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECCCCCHHHCCCCCCCCCCCC Q ss_conf 9999999988893676330256334-554454215765379999999997301447-98613327100114310013654 Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFPNIPMDL-RNNTGSHIIDPDNLINEGICAIKKNIPNIG-IITDVALDPFTIHGHDGILCDGE 148 (337) Q Consensus 71 ~~eie~~~~lGI~av~LFp~I~~~~-Kd~~GseA~n~dglv~rAIr~IK~~fpdl~-vi~DVcLc~YT~hGHcGi~~~g~ 148 (337) .+.++.+...|...+.+|..+.+.. +...+......-......++..++....+. .+.+...|++++. T Consensus 86 ~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~v~~~~~~~~~~~~~~~---------- 155 (302) T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGD---------- 155 (302) T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBC---------- T ss_pred CHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCC---------- T ss_conf 1479999836998899973054999988763008889987889999998620011033310257775553---------- Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC Q ss_conf 46289999999999999962897352466767 Q gi|255764463|r 149 IVNDETIELISHAAVIQADAGADIIAPSEMMD 180 (337) Q Consensus 149 IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD 180 (337) ++ .+.+.+.+....+.|+|.|.-.|++- T Consensus 156 ~~----~~~~~~~~~~~~~~g~d~i~l~Dt~G 183 (302) T 2ftp_A 156 VD----PRQVAWVARELQQMGCYEVSLGDTIG 183 (302) T ss_dssp CC----HHHHHHHHHHHHHTTCSEEEEEESSS T ss_pred EE----HHHHHHHHHHHHHCCCEEECCCCCCC T ss_conf 10----89999999999965973642577446 No 261 >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* Probab=20.00 E-value=41 Score=13.72 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=16.5 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 632889999999999998889367633 Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAIF 88 (337) Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~LF 88 (337) ..-++.+.+.-.++-+.+++-+-|+-+ T Consensus 23 fNv~~~e~~~avi~AAee~~sPvIlq~ 49 (323) T 2isw_A 23 FNVNNMEQIQGIMKAVVQLKSPVILQC 49 (323) T ss_dssp EECCSHHHHHHHHHHHHHTTCCEEEEE T ss_pred EEECCHHHHHHHHHHHHHHCCCEEEEC T ss_conf 753899999999999999499999997 Done!