HHSEARCH alignment of GI: 255764463 and SCOP domain: d2d69a1

Alignment
>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=92.80  E-value=0.16  Score=28.42  Aligned_cols=136  Identities=18%  Similarity=0.229  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEE--------CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf             9999999999999962897352--------46676779999999998778857730033666435430101675310244
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIA--------PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL  224 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivA--------PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~  224 (337)
                      -|-+.+++++-.++..|+|+|-        |-.=..-||.++.++.++.                             ..
T Consensus        32 ls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~~eRv~~~~~a~~~a-----------------------------~~   82 (291)
T d2d69a1          32 WSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRV-----------------------------EA   82 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHH-----------------------------HH
T ss_pred             CCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHH-----------------------------HH
T ss_conf             9989999999999744876302775577888777899999999999999-----------------------------99


Q ss_pred             CCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf             677774431572114-788988887664089879955311458999999962---4998999934618999999998889
Q gi|255764463|r  225 LKGDKKTYYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK---FGLPTFAYQVSGEYAMIKAASLQGW  300 (337)
Q Consensus       225 ~~gdr~sYQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~---~~~P~~aYqVSGEYami~~a~~~g~  300 (337)
                      -.|.++-|-.+.... .|-++.+..=.+.|++.+||-|...=++.++.+++.   ..+|+ -+|-+|-=++. ..-..| 
T Consensus        83 ~tG~~~~Ya~Nit~~~~~m~~ra~~~~~~G~~~vmi~~~~~G~~al~~l~~~~~~~~l~i-h~Hra~~g~~~-r~~~~G-  159 (291)
T d2d69a1          83 ETGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAI-HAHRAMHAAFT-RNPRHG-  159 (291)
T ss_dssp             HHSSCCEEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHHHHHTCEE-EEECTTTHHHH-SCTTSE-
T ss_pred             HHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEE-EECCCCCCEEC-CCCCCC-
T ss_conf             868830799762687778778999999829977974464551589999998641255156-52245432121-587776-


Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             788999999999997726999982
Q gi|255764463|r  301 INKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       301 ~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      ++.  .++-.  -.+-||||.|++
T Consensus       160 is~--~v~~k--L~RLaGaD~ih~  179 (291)
T d2d69a1         160 ITM--LALAK--AARMIGVDQIHT  179 (291)
T ss_dssp             ECH--HHHHH--HHHHHTCSEEEC
T ss_pred             CCH--HHHHH--HHHHCCCCEEEC
T ss_conf             069--99999--999728884343


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]