RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
(337 letters)
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A
{Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A*
1b4e_A
Length = 323
Score = 423 bits (1088), Expect = e-119
Identities = 136/318 (42%), Positives = 198/318 (62%), Gaps = 4/318 (1%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
+R RR RKS +R M E LS++DL+LPIF+ +++ +MP VMR+ +I
Sbjct: 5 QRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREI 64
Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134
+++A+ GI ++ F + TGS D L+ K+ +P + +++D
Sbjct: 65 ERIANAGIRSVMTFGISHH--TDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCE 122
Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194
+T HGH G+LC+ + ND T+E + AV+ A AGAD IAPS MDG+VQ IR+ LD+ G
Sbjct: 123 YTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAG 182
Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254
+ IM Y KF SSFYGP+R+A + LKGD+K+Y ++P N +EAIRE+ +D + A
Sbjct: 183 FKDTAIMSYSTKFASSFYGPFREAAGSA--LKGDRKSYQMNPMNRREAIRESLLDEAQGA 240
Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314
D L+VKP YLD+ ++E+ LP AYQVSGEYAMIK A+L G I++ ++ESL +
Sbjct: 241 DCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSI 300
Query: 315 KRAGCDGIFTYFAMEAAR 332
KRAG D IF+YFA++ A
Sbjct: 301 KRAGADLIFSYFALDLAE 318
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Length = 360
Score = 421 bits (1084), Expect = e-119
Identities = 144/323 (44%), Positives = 214/323 (66%), Gaps = 3/323 (0%)
Query: 14 HRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73
R RRNRK+ +R++V+E+ + S LI P+F+ E +V I SMP R+S++ +++
Sbjct: 24 QARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVP-IPSMPGQSRLSMEDLLKE 82
Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133
+ + GI A +FP + +L++ +PD L+ I A+K+ P++ ++ DVALD
Sbjct: 83 VGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALD 142
Query: 134 PFTIHGHDGIL--CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLD 191
P++ GHDG++ G+IVND T+ + A+ A AGAD++ PS+MMDGRV IR+ LD
Sbjct: 143 PYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESLD 202
Query: 192 SHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251
G + I+ Y K+ SSFYGP+RDA+ + + DKKTY +DP+N +EA REA D
Sbjct: 203 MEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREAEADAS 262
Query: 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESL 311
E ADML+VKPGLPYLDV +I+EK LP AY VSGEYAM+KAA+ +G+I++ D ++E L
Sbjct: 263 EGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVL 322
Query: 312 LAFKRAGCDGIFTYFAMEAARIL 334
+F+RAG D + TY+A EAA+ +
Sbjct: 323 KSFRRAGADAVATYYAKEAAKWM 345
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
tetrapyrrole biosynthesis, reaction intermediate, lyase;
HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
1e51_A* 2z0i_A 2z1b_A
Length = 330
Score = 406 bits (1044), Expect = e-114
Identities = 113/324 (34%), Positives = 177/324 (54%), Gaps = 5/324 (1%)
Query: 15 RRMRRNRKSNWIREM-VREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73
+ +R L+ S+LI PIF+T ++ I S+P V R + E
Sbjct: 5 SVLHSGYLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEM 64
Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133
++ + + G+ + IF ++ GS ++ E I ++K PN+ + DV L
Sbjct: 65 LRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLC 124
Query: 134 PFTIHGHDGILCDGEIV-NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192
P+T HGH G+L + +E+ + ++ A+ A AG ++APS+MMDGRV+ I++ L +
Sbjct: 125 PYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMA 184
Query: 193 HGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251
HG N V +M Y AKF S FYGP+RDA + GD++ Y L P A+R D++
Sbjct: 185 HGLGNRVSVMSYSAKFASCFYGPFRDAAKSS-PAFGDRRCYQLPPGARGLALRAVDRDVR 243
Query: 252 ESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310
E ADML+VKPG+PYLD+ +K+K LP Y VSGE+AM+ + G + A++E+
Sbjct: 244 EGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEA 303
Query: 311 LLAFKRAGCDGIFTYFAMEAARIL 334
+ AF+RAG D I TY+ + + L
Sbjct: 304 MTAFRRAGADIIITYYTPQLLQWL 327
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 404 bits (1040), Expect = e-113
Identities = 105/324 (32%), Positives = 170/324 (52%), Gaps = 5/324 (1%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
+ +R+ E +L+ + LI P+F++ I+S+P++ R+ ++ + +
Sbjct: 16 SVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYL 75
Query: 75 KQVADLGIPAIAIFPN-IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133
K + G+ ++ +F + ++ G+ DP + +GI I++ P + II DV L
Sbjct: 76 KPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLC 135
Query: 134 PFTIHGHDGILCDGEIVND-ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192
+T HGH G+L D +N ++ ++ AV A AGA +APS+M+DGR+++I++ L +
Sbjct: 136 EYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLIN 195
Query: 193 -HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251
+ ++ Y AKF+ + YGP+RDA + GD+K Y L PA A R D+
Sbjct: 196 ANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPS-NGDRKCYQLPPAGRGLARRALERDMS 254
Query: 252 ESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310
E AD ++VKP YLD+ E LP AY VSGEYAM+ AA+ +G ++ ES
Sbjct: 255 EGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFES 314
Query: 311 LLAFKRAGCDGIFTYFAMEAARIL 334
F RAG I TY A E L
Sbjct: 315 HQGFLRAGARLIITYLAPEFLDWL 338
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution,
metalloenzyme, porphobilinogen synthase, protein
engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A*
1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A
2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Length = 337
Score = 359 bits (923), Expect = e-100
Identities = 155/323 (47%), Positives = 223/323 (69%), Gaps = 3/323 (0%)
Query: 14 HRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73
+ R+RRNR+ ++ R +VRE+ L+V DLILP+F+ G ESI SMP V R+SID + +
Sbjct: 12 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIE 71
Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133
++ LGIPA+A+FP P++ ++ + +P+ + A+++ P +GIITDV L
Sbjct: 72 AEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLC 131
Query: 134 PFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192
FT HG GIL DG ++ND +I+++ A+ A+AGA ++APS+MMDGR+ IR+ L+S
Sbjct: 132 EFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALES 191
Query: 193 HGHINVGIMPYVAKFNSSFYGPYRDAI-STRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251
GH NV +M Y AK+ S++YGP+RDA+ S +L KG++ TY +DPAN EA+ E + D+
Sbjct: 192 AGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDEALHEVAADLA 251
Query: 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESL 311
E ADM++VKPG+PYLD+ R+K++F PTF YQVSGEYAM A GW+ + ++ESL
Sbjct: 252 EGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE-SVILESL 310
Query: 312 LAFKRAGCDGIFTYFAMEAARIL 334
AFKRAG DGI TYFA +AA L
Sbjct: 311 TAFKRAGADGILTYFAKQAAEQL 333
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole
biosynthesis, ALAD, porphyrin biosynthesis, heme
biosynthesis, lyase; 2.6A {Prosthecochloris
vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Length = 328
Score = 346 bits (889), Expect = 4e-96
Identities = 159/320 (49%), Positives = 226/320 (70%), Gaps = 3/320 (0%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
R RR R++ +R +V+E+ L+V+DL+ P+F+ G VE ++SMP R +ID AVE+
Sbjct: 11 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEEC 70
Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134
K++ DLGI I +F + + GS + + ++ + I AIKK +P + I+TDVALDP
Sbjct: 71 KELYDLGIQGIDLFG--IPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDP 128
Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194
FT GHDG++ DG I+NDET+E++ AV A+AGAD ++PS+MMDGR+ IR+ LD
Sbjct: 129 FTPFGHDGLVKDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETD 188
Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254
H +VGI+ Y AK+ SSFYGP+RDA+ + GDK TY ++PAN +EA++E +DI E A
Sbjct: 189 HSDVGILSYAAKYASSFYGPFRDALHSAPQ-FGDKSTYQMNPANTEEAMKEVELDIVEGA 247
Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314
D+++VKPGL YLD+ +R KE+F +P Y VSGEYAM+KAA+ +GWI+++ MMESLL
Sbjct: 248 DIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCM 307
Query: 315 KRAGCDGIFTYFAMEAARIL 334
KRAG D IFTY+A EAA+ L
Sbjct: 308 KRAGADIIFTYYAKEAAKKL 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.2 bits (91), Expect = 0.001
Identities = 58/312 (18%), Positives = 87/312 (27%), Gaps = 152/312 (48%)
Query: 35 LSVSDLILPIFLTSGEKTVESINS-MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPM 93
LS+S+L + + V NS +P KQV I+
Sbjct: 339 LSISNLTQE-QV---QDYVNKTNSHLPA------G------KQV------EIS------- 369
Query: 94 DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDE 153
L N NL+ V+ P +++G
Sbjct: 370 -LVNG-------AKNLV-------------------VSGPPQSLYG-------------- 388
Query: 154 TIELISHAAVIQADAGAD---IIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209
L +A +G D I P SE RK S+ +P + F+S
Sbjct: 389 ---LNLTLRKAKAPSGLDQSRI--PFSE---------RKLKFSN-----RFLPVASPFHS 429
Query: 210 SFYGPY-RDAISTRDLLKGD--KKTYYLDPANVQ---------EAIREASIDIQESA-DM 256
A DL+ D K + ++Q +R S I E D
Sbjct: 430 ----HLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 257 LLVKP-------GLPY---LDVCF-------------RIKEKFGLPTFAYQVSGEYAMIK 293
++ P LD F R K+ G+ +V I
Sbjct: 483 IIRLPVKWETTTQFKATHILD--FGPGGASGLGVLTHRNKDGTGV-----RV------IV 529
Query: 294 AASLQGWINKND 305
A +L IN +D
Sbjct: 530 AGTLD--INPDD 539
Score = 36.8 bits (85), Expect = 0.006
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 42/130 (32%)
Query: 27 REMVREH------RLSVSDLILPIFLT-SGE---KTVESINSMPDVMRMSIDVAVEKIKQ 76
+++ + + D+ +P++ T G SI ++ + +K
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI--SERIVDC---IIRLPVKW 490
Query: 77 VADLGIPAIAIFPNIPMDLRNNTGSHIID--PDNLINEGICAI-KKNIPNIG--IITDVA 131
A +HI+D P G+ + +N G +I
Sbjct: 491 ETTTQFKA----------------THILDFGPGGA--SGLGVLTHRNKDGTGVRVIVAGT 532
Query: 132 LDPFTIHGHD 141
LD D
Sbjct: 533 LDI----NPD 538
Score = 33.4 bits (76), Expect = 0.080
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 60/159 (37%)
Query: 185 EIRKKLD-SHGHINVGIMPYVAKFNS------SFYGPYRDA------ISTRDLLKGDKKT 231
E+R L + GH + G++ A + SF+ R A I R
Sbjct: 262 ELRSYLKGATGH-SQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE-----A 313
Query: 232 Y---YLDPANVQEAIREASIDIQESAD--MLLVKPGLP------YLDVCFRIKEKFGLPT 280
Y L P+ +++ S++ E ML + L Y++ LP
Sbjct: 314 YPNTSLPPSILED-----SLENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSH-----LP- 361
Query: 281 FAYQVSGEYAMIKAASLQGWINKNDAMM-----ESLLAF 314
+ SL +N ++ +SL
Sbjct: 362 -------AGKQV-EISL---VNGAKNLVVSGPPQSLYGL 389
Score = 32.2 bits (73), Expect = 0.15
Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 57/211 (27%)
Query: 127 ITDVALD-P--FTIH--GHDG-------------ILCDGEIVNDETI-ELISHAA--VIQ 165
I D+ ++ P TIH G G + DG++ ++ E+ H+ +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 166 ADAG----ADIIAPS-EMMD-GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI 219
++ G P+ +M+ ++++ K G++P A F G Y
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSK---------GLIPADATFAGHSLGEYAALA 1771
Query: 220 STRDLLKGDK--KTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG 277
S D++ + + + +Q A+ + + + M+ + PG R+ F
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELG-RSNYGMIAINPG--------RVAASFS 1822
Query: 278 LPTFAYQVSGEYAMIKAASLQGW----INKN 304
Q + +Y + + GW +N N
Sbjct: 1823 ------QEALQYVVERVGKRTGWLVEIVNYN 1847
Score = 31.5 bits (71), Expect = 0.27
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 68/183 (37%)
Query: 148 EIVNDETIELISH-----AAVIQADAGADIIAPSEMMDGRV--QEIRKKLDSHGHINVGI 200
+IV + + L H I+ + A I ++DG++ ++I K+++ H
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMIF--ETIVDGKLKTEKIFKEINEH------- 1713
Query: 201 MPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK 260
S+ Y +R S + LL T + PA + + E A
Sbjct: 1714 --------STSY-TFR---SEKGLLSA---TQFTQPA----------LTLMEKA------ 1742
Query: 261 PGLPYLDVCFRIKEKFGLP---TFAYQVSGEYAMIKAASLQGWINKNDAM-MESL--LAF 314
+ D +K K +P TFA GEYA + ASL D M +ESL + F
Sbjct: 1743 ---AFED----LKSKGLIPADATFAGHSLGEYAAL--ASLA------DVMSIESLVEVVF 1787
Query: 315 KRA 317
R
Sbjct: 1788 YRG 1790
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.1 bits (74), Expect = 0.086
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 70 AVEKI----KQVADLGIPAIAI 87
A++K+ K AD PA+AI
Sbjct: 21 ALKKLQASLKLYADDSAPALAI 42
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum.,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Corynebacterium glutamicum}
Length = 307
Score = 29.9 bits (67), Expect = 0.77
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 146 DGEIVNDETIELISHAAVIQADAGADII 173
+G++VND + + + + I A G D
Sbjct: 190 NGKVVNDLSTDAVIQSVAIAAGLGNDSS 217
>3hyn_A Putative signal transduction protein; YP_002936568.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Length = 189
Score = 28.8 bits (64), Expect = 1.6
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 27/122 (22%)
Query: 20 NRKSNW---IREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQ 76
S+W ++ + RL S I+ L T S +R ++ +
Sbjct: 60 RDGSDWEKTLKPRLHT-RLDNSKNII---LFLSSITANS-----RALREEMNYGIGT--- 107
Query: 77 VADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136
G+P I I+P+ D + IK + D T
Sbjct: 108 ---KGLPVIVIYPD---------YDKKSDIVDSNGNFKKQIKDLWDKLPAFRDNMSSVAT 155
Query: 137 IH 138
+H
Sbjct: 156 LH 157
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structure initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 27.8 bits (60), Expect = 3.5
Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 17/167 (10%)
Query: 171 DIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKK 230
D + ++ I+ +L+ + + ++ +A + + + S +
Sbjct: 203 DKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMF 262
Query: 231 TYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSG 287
P +++ A I ML+ + P + + + L Y V
Sbjct: 263 K----PGAMKQVAEYADG-IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRS 317
Query: 288 EYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334
+ D + +AG +G+FT F +A + L
Sbjct: 318 DKLPEYTP---------DVNQLYDALYNKAGVNGLFTDFPDKAVKFL 355
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
joint center for structural genomics; HET: MSE PE4;
1.55A {Parabacteroides distasonis}
Length = 292
Score = 27.0 bits (59), Expect = 6.0
Identities = 10/116 (8%), Positives = 26/116 (22%), Gaps = 13/116 (11%)
Query: 209 SSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDV 268
+ A + ++ + + I + K +V
Sbjct: 163 TVHD--GASARFFYEKNPNFMFEAFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPEVREV 220
Query: 269 CFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324
+ E+ G+ + + ++ R G D I +
Sbjct: 221 IDMLHER-GVMCMISTAPSDDKLS-------TPESRAEAYRMII---RQGVDIIES 265
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 26.7 bits (58), Expect = 7.0
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR---DL 224
AG++ I S+++ R++E + S + I ++ + P+R++ T
Sbjct: 246 AGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 305
Query: 225 LKGDKKTY 232
L GD KT
Sbjct: 306 LTGDSKTL 313
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor,
signaling protein; HET: MSE; 2.20A {Arabidopsis
thaliana} PDB: 2nty_A* 2wbl_A
Length = 365
Score = 26.6 bits (59), Expect = 7.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 21 RKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADL 80
R++ W +E+ + LSV+D I+ V S + D + I V +Q DL
Sbjct: 65 RQARWKKEI--DWLLSVTDHIVEF--------VPSQQTSKDGVCTEIMVT----RQRGDL 110
Query: 81 --GIPAI 85
IPA+
Sbjct: 111 LMNIPAL 117
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4
PDB: 1i6n_A
Length = 278
Score = 26.6 bits (58), Expect = 8.1
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 9/67 (13%)
Query: 26 IREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAI 85
+ E + H + L +F + + I ++ LG+ +
Sbjct: 51 LAEYFQTHHIKPLALNALVFFNNRD---------EKGHNEIITEFKGMMETCKTLGVKYV 101
Query: 86 AIFPNIP 92
P +
Sbjct: 102 VAVPLVT 108
>3i10_A Putative glycerophosphoryl diester phosphodiesterase; NP_812074.1,
structural genomics; HET: MSE; 1.35A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 278
Score = 26.5 bits (57), Expect = 8.4
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 300 WINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334
+ + L+ ++ G + T L
Sbjct: 239 ALTDPEKSYGYLI--EQLGARILQTDQPAYLLDYL 271
>2xuc_A Chitinase, chitinase A1; hydrolase, aspergillosis; 2.30A
{Aspergillus fumigatus}
Length = 310
Score = 26.4 bits (57), Expect = 9.5
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI 124
+ D V +K ++ +P + + PD + + + +
Sbjct: 223 FNFDAWVTVLKAS---ASKDAKLYVGLPASETAANQGYYLTPDEVESLVSTYMDRYPDTF 279
Query: 125 G 125
G
Sbjct: 280 G 280
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,032,666
Number of extensions: 145430
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 35
Length of query: 337
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 244
Effective length of database: 3,438,538
Effective search space: 839003272
Effective search space used: 839003272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)