RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
(337 letters)
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 364 bits (936), Expect = e-102
Identities = 159/323 (49%), Positives = 227/323 (70%), Gaps = 3/323 (0%)
Query: 14 HRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73
+ R+RRNR+ ++ R +VRE+ L+V DLILP+F+ G ESI SMP V R+SID + +
Sbjct: 6 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIE 65
Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133
++ LGIPA+A+FP P++ ++ + +P+ + A+++ P +GIITDVALD
Sbjct: 66 AEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALD 125
Query: 134 PFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192
PFT HG +GIL DG ++ND +I+++ A+ A+AGA ++APS+MMDGR+ IR+ L+S
Sbjct: 126 PFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALES 185
Query: 193 HGHINVGIMPYVAKFNSSFYGPYRDAI-STRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251
GH NV +M Y AK+ S++YGP+RDA+ S +L KG+K TY +DPAN EA+ E + D+
Sbjct: 186 AGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLA 245
Query: 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESL 311
E ADM++VKPG+PYLD+ R+K++F PTF YQVSGEYAM A GW+ + ++ESL
Sbjct: 246 EGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE-SVILESL 304
Query: 312 LAFKRAGCDGIFTYFAMEAARIL 334
AFKRAG DGI TYFA +AA L
Sbjct: 305 TAFKRAGADGILTYFAKQAAEQL 327
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Escherichia coli [TaxId:
562]}
Length = 323
Score = 351 bits (903), Expect = 4e-98
Identities = 136/318 (42%), Positives = 198/318 (62%), Gaps = 4/318 (1%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
+R RR RKS +R M E LS++DL+LPIF+ +++ +MP VMR+ +I
Sbjct: 5 QRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREI 64
Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134
+++A+ GI ++ F + TGS D L+ K+ +P + +++D
Sbjct: 65 ERIANAGIRSVMTFGISHH--TDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCE 122
Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194
+T HGH G+LC+ + ND T+E + AV+ A AGAD IAPS MDG+VQ IR+ LD+ G
Sbjct: 123 YTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAG 182
Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254
+ IM Y KF SSFYGP+R+A + LKGD+K+Y ++P N +EAIRE+ +D + A
Sbjct: 183 FKDTAIMSYSTKFASSFYGPFREAAGSA--LKGDRKSYQMNPMNRREAIRESLLDEAQGA 240
Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314
D L+VKP YLD+ ++E+ LP AYQVSGEYAMIK A+L G I++ ++ESL +
Sbjct: 241 DCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSI 300
Query: 315 KRAGCDGIFTYFAMEAAR 332
KRAG D IF+YFA++ A
Sbjct: 301 KRAGADLIFSYFALDLAE 318
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 347 bits (892), Expect = 7e-97
Identities = 159/320 (49%), Positives = 226/320 (70%), Gaps = 3/320 (0%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
R RR R++ +R +V+E+ L+V+DL+ P+F+ G VE ++SMP R +ID AVE+
Sbjct: 2 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEEC 61
Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134
K++ DLGI I +F + + GS + + ++ + I AIKK +P + I+TDVALDP
Sbjct: 62 KELYDLGIQGIDLFG--IPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDP 119
Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194
FT GHDG++ DG I+NDET+E++ AV A+AGAD ++PS+MMDGR+ IR+ LD
Sbjct: 120 FTPFGHDGLVKDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETD 179
Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254
H +VGI+ Y AK+ SSFYGP+RDA+ + GDK TY ++PAN +EA++E +DI E A
Sbjct: 180 HSDVGILSYAAKYASSFYGPFRDALHSAPQF-GDKSTYQMNPANTEEAMKEVELDIVEGA 238
Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314
D+++VKPGL YLD+ +R KE+F +P Y VSGEYAM+KAA+ +GWI+++ MMESLL
Sbjct: 239 DIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCM 298
Query: 315 KRAGCDGIFTYFAMEAARIL 334
KRAG D IFTY+A EAA+ L
Sbjct: 299 KRAGADIIFTYYAKEAAKKL 318
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 320 bits (822), Expect = 8e-89
Identities = 104/324 (32%), Positives = 169/324 (52%), Gaps = 5/324 (1%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
+ +R+ E +L+ + LI P+F++ I+S+P++ R+ ++ + +
Sbjct: 16 SVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYL 75
Query: 75 KQVADLGIPAIAIFPN-IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133
K + G+ ++ +F + ++ G+ DP + +GI I++ P + II DV L
Sbjct: 76 KPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLC 135
Query: 134 PFTIHGHDGILCDGEIV-NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192
+T HGH G+L D + + ++ ++ AV A AGA +APS+M+DGR+++I++ L +
Sbjct: 136 EYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLIN 195
Query: 193 H-GHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251
++ Y AKF+ + YGP+RDA + GD+K Y L PA A R D+
Sbjct: 196 ANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPS-NGDRKCYQLPPAGRGLARRALERDMS 254
Query: 252 ESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310
E AD ++VKP YLD+ E LP AY VSGEYAM+ AA+ +G ++ ES
Sbjct: 255 EGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFES 314
Query: 311 LLAFKRAGCDGIFTYFAMEAARIL 334
F RAG I TY A E L
Sbjct: 315 HQGFLRAGARLIITYLAPEFLDWL 338
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 318 bits (817), Expect = 3e-88
Identities = 114/314 (36%), Positives = 177/314 (56%), Gaps = 5/314 (1%)
Query: 25 WIREM-VREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIP 83
+R L+ S+LI PIF+T ++ I S+P V R + E ++ + + G+
Sbjct: 5 LLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLR 64
Query: 84 AIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143
+ IF ++ GS ++ E I ++K PN+ + DV L P+T HGH G+
Sbjct: 65 CVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGL 124
Query: 144 LC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHIN-VGIM 201
L +G +E+ + ++ A+ A AG ++APS+MMDGRV+ I++ L +HG N V +M
Sbjct: 125 LSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVM 184
Query: 202 PYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP 261
Y AKF S FYGP+RDA + GD++ Y L P A+R D++E ADML+VKP
Sbjct: 185 SYSAKFASCFYGPFRDAAKSS-PAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVKP 243
Query: 262 GLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD 320
G+PYLD+ +K+K LP Y VSGE+AM+ + G + A++E++ AF+RAG D
Sbjct: 244 GMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGAD 303
Query: 321 GIFTYFAMEAARIL 334
I TY+ + + L
Sbjct: 304 IIITYYTPQLLQWL 317
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 29.0 bits (64), Expect = 0.57
Identities = 26/210 (12%), Positives = 61/210 (29%), Gaps = 26/210 (12%)
Query: 11 ICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVA 70
+ R +++ + + H + + + S DVM + V
Sbjct: 172 LNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVV 231
Query: 71 V---------EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKN 120
+ + I QVA A I L + + +D + + + +
Sbjct: 232 LIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPE 291
Query: 121 IPNIGIITDVALDPFTIHGHDGILCDG-------EIVNDETIELIS------HAAVIQAD 167
+ + + DP + +G + + E + + + ++ A Q D
Sbjct: 292 VVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWD 351
Query: 168 AGADIIAPSE---MMDGRVQEIRKKLDSHG 194
G +++ + R L G
Sbjct: 352 DGNNVVCLEPGVVVGYDRNTYTNTLLRKAG 381
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase
GlpQ {Escherichia coli [TaxId: 562]}
Length = 328
Score = 28.2 bits (61), Expect = 0.99
Identities = 24/225 (10%), Positives = 63/225 (28%), Gaps = 25/225 (11%)
Query: 121 IPNIGIITDVALDPFTIHGHDGILC--------DGEIVNDETIELISHAAVIQADAGADI 172
+ + G + + + D + + D
Sbjct: 117 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDK 176
Query: 173 IAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY 232
+ ++ I+ +L+ + + ++ +A + + + D +
Sbjct: 177 VYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQP-----DGSWVNYNYD 231
Query: 233 YLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSGEY 289
++ + + E + I ML+ + P + + + L Y V +
Sbjct: 232 WMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDK 291
Query: 290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334
D + +AG +G+FT F +A + L
Sbjct: 292 LPEYTP---------DVNQLYDALYNKAGVNGLFTDFPDKAVKFL 327
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox
component of NADPH oxidase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 82
Score = 27.0 bits (60), Expect = 2.5
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKR 316
+ +PGLPY V + +K L ++S + + ++ M+ +
Sbjct: 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLS-----YRPRDSNELVPLSEDSMKDAWGQVK 72
Query: 317 AGC 319
C
Sbjct: 73 NYC 75
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 26.3 bits (56), Expect = 3.4
Identities = 17/156 (10%), Positives = 35/156 (22%), Gaps = 4/156 (2%)
Query: 1 MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP 60
+ N + + + +S S
Sbjct: 116 YYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPY 175
Query: 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN 120
++ + + + + + F + G H +LI + + +
Sbjct: 176 GESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD 235
Query: 121 IPNIGIITDVAL----DPFTIHGHDGILCDGEIVND 152
I +T I G D DG V D
Sbjct: 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRD 271
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 26.5 bits (58), Expect = 3.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 146 DGEIVNDETIELISHAAVIQADAGADII 173
G++VN+ E++++AA I + GAD +
Sbjct: 147 GGKVVNETAPEIVAYAARIALELGADAM 174
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 25.9 bits (55), Expect = 5.0
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 72 EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIID 105
EK+ + +LG+ AI + P D + G
Sbjct: 38 EKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAA 71
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 310
Score = 25.7 bits (56), Expect = 6.0
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 72 EKIKQVADLGIPAIAI-FPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI 124
K +++ LG+ + A+ F +I + N + N I+E +K +I +
Sbjct: 98 AKFEKMYQLGVRSFAVFFDDISGEGTNPQKQAEL--LNYIDEKFAQVKPDINQL 149
>d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella
pneumophila [TaxId: 446]}
Length = 157
Score = 25.4 bits (55), Expect = 7.6
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 205 AKFNSSFYGPYRDAISTRDLLKGDKKTYYLDP 236
AK + F P ++ +T D GD Y +
Sbjct: 112 AKAAADFSSPVKNFKATYDYEVGDLIKAYDNQ 143
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 25.0 bits (53), Expect = 8.4
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 148 EIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKF 207
N +T + AG++ I S+++ R++E + S + I
Sbjct: 224 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 283
Query: 208 NSSFYGPYRDAISTR---DLLKGDKKT 231
++ + P+R++ T L GD KT
Sbjct: 284 STKRHIPFRNSKLTYLLQYSLTGDSKT 310
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 24.9 bits (53), Expect = 9.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 279 PTFAYQVSGEYAMIKAASLQGWINKNDAMME 309
P+F+ + MI A +G + ++E
Sbjct: 36 PSFSVKCRIGANMIWDAEKRGVLKPGVELVE 66
>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x
(pbp-2x), c-terminal domain {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 61
Score = 24.9 bits (54), Expect = 9.6
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 54 ESINSMPDVMRMSIDVAVEKIKQ 76
+S MP V +S E++++
Sbjct: 2 QSPYPMPSVKDISPGDLAEELRR 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,307,363
Number of extensions: 63141
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 33
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)