RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] (337 letters) >d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 329 Score = 364 bits (936), Expect = e-102 Identities = 159/323 (49%), Positives = 227/323 (70%), Gaps = 3/323 (0%) Query: 14 HRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73 + R+RRNR+ ++ R +VRE+ L+V DLILP+F+ G ESI SMP V R+SID + + Sbjct: 6 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIE 65 Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133 ++ LGIPA+A+FP P++ ++ + +P+ + A+++ P +GIITDVALD Sbjct: 66 AEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALD 125 Query: 134 PFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192 PFT HG +GIL DG ++ND +I+++ A+ A+AGA ++APS+MMDGR+ IR+ L+S Sbjct: 126 PFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALES 185 Query: 193 HGHINVGIMPYVAKFNSSFYGPYRDAI-STRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 GH NV +M Y AK+ S++YGP+RDA+ S +L KG+K TY +DPAN EA+ E + D+ Sbjct: 186 AGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADLA 245 Query: 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESL 311 E ADM++VKPG+PYLD+ R+K++F PTF YQVSGEYAM A GW+ + ++ESL Sbjct: 246 EGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE-SVILESL 304 Query: 312 LAFKRAGCDGIFTYFAMEAARIL 334 AFKRAG DGI TYFA +AA L Sbjct: 305 TAFKRAGADGILTYFAKQAAEQL 327 >d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Length = 323 Score = 351 bits (903), Expect = 4e-98 Identities = 136/318 (42%), Positives = 198/318 (62%), Gaps = 4/318 (1%) Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74 +R RR RKS +R M E LS++DL+LPIF+ +++ +MP VMR+ +I Sbjct: 5 QRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREI 64 Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 +++A+ GI ++ F + TGS D L+ K+ +P + +++D Sbjct: 65 ERIANAGIRSVMTFGISHH--TDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCE 122 Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194 +T HGH G+LC+ + ND T+E + AV+ A AGAD IAPS MDG+VQ IR+ LD+ G Sbjct: 123 YTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAG 182 Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 + IM Y KF SSFYGP+R+A + LKGD+K+Y ++P N +EAIRE+ +D + A Sbjct: 183 FKDTAIMSYSTKFASSFYGPFREAAGSA--LKGDRKSYQMNPMNRREAIRESLLDEAQGA 240 Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314 D L+VKP YLD+ ++E+ LP AYQVSGEYAMIK A+L G I++ ++ESL + Sbjct: 241 DCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSI 300 Query: 315 KRAGCDGIFTYFAMEAAR 332 KRAG D IF+YFA++ A Sbjct: 301 KRAGADLIFSYFALDLAE 318 >d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Length = 319 Score = 347 bits (892), Expect = 7e-97 Identities = 159/320 (49%), Positives = 226/320 (70%), Gaps = 3/320 (0%) Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74 R RR R++ +R +V+E+ L+V+DL+ P+F+ G VE ++SMP R +ID AVE+ Sbjct: 2 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEEC 61 Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 K++ DLGI I +F + + GS + + ++ + I AIKK +P + I+TDVALDP Sbjct: 62 KELYDLGIQGIDLFG--IPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDP 119 Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194 FT GHDG++ DG I+NDET+E++ AV A+AGAD ++PS+MMDGR+ IR+ LD Sbjct: 120 FTPFGHDGLVKDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETD 179 Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 H +VGI+ Y AK+ SSFYGP+RDA+ + GDK TY ++PAN +EA++E +DI E A Sbjct: 180 HSDVGILSYAAKYASSFYGPFRDALHSAPQF-GDKSTYQMNPANTEEAMKEVELDIVEGA 238 Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314 D+++VKPGL YLD+ +R KE+F +P Y VSGEYAM+KAA+ +GWI+++ MMESLL Sbjct: 239 DIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCM 298 Query: 315 KRAGCDGIFTYFAMEAARIL 334 KRAG D IFTY+A EAA+ L Sbjct: 299 KRAGADIIFTYYAKEAAKKL 318 >d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 340 Score = 320 bits (822), Expect = 8e-89 Identities = 104/324 (32%), Positives = 169/324 (52%), Gaps = 5/324 (1%) Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74 + +R+ E +L+ + LI P+F++ I+S+P++ R+ ++ + + Sbjct: 16 SVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYL 75 Query: 75 KQVADLGIPAIAIFPN-IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133 K + G+ ++ +F + ++ G+ DP + +GI I++ P + II DV L Sbjct: 76 KPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLC 135 Query: 134 PFTIHGHDGILCDGEIV-NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192 +T HGH G+L D + + ++ ++ AV A AGA +APS+M+DGR+++I++ L + Sbjct: 136 EYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLIN 195 Query: 193 H-GHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 ++ Y AKF+ + YGP+RDA + GD+K Y L PA A R D+ Sbjct: 196 ANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPS-NGDRKCYQLPPAGRGLARRALERDMS 254 Query: 252 ESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310 E AD ++VKP YLD+ E LP AY VSGEYAM+ AA+ +G ++ ES Sbjct: 255 EGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFES 314 Query: 311 LLAFKRAGCDGIFTYFAMEAARIL 334 F RAG I TY A E L Sbjct: 315 HQGFLRAGARLIITYLAPEFLDWL 338 >d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Length = 320 Score = 318 bits (817), Expect = 3e-88 Identities = 114/314 (36%), Positives = 177/314 (56%), Gaps = 5/314 (1%) Query: 25 WIREM-VREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIP 83 +R L+ S+LI PIF+T ++ I S+P V R + E ++ + + G+ Sbjct: 5 LLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLR 64 Query: 84 AIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 + IF ++ GS ++ E I ++K PN+ + DV L P+T HGH G+ Sbjct: 65 CVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGL 124 Query: 144 LC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHIN-VGIM 201 L +G +E+ + ++ A+ A AG ++APS+MMDGRV+ I++ L +HG N V +M Sbjct: 125 LSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVM 184 Query: 202 PYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP 261 Y AKF S FYGP+RDA + GD++ Y L P A+R D++E ADML+VKP Sbjct: 185 SYSAKFASCFYGPFRDAAKSS-PAFGDRRCYQLPPGARGLALRAVDRDVREGADMLMVKP 243 Query: 262 GLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD 320 G+PYLD+ +K+K LP Y VSGE+AM+ + G + A++E++ AF+RAG D Sbjct: 244 GMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGAD 303 Query: 321 GIFTYFAMEAARIL 334 I TY+ + + L Sbjct: 304 IIITYYTPQLLQWL 317 >d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} Length = 412 Score = 29.0 bits (64), Expect = 0.57 Identities = 26/210 (12%), Positives = 61/210 (29%), Gaps = 26/210 (12%) Query: 11 ICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVA 70 + R +++ + + H + + + S DVM + V Sbjct: 172 LNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVV 231 Query: 71 V---------EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKN 120 + + I QVA A I L + + +D + + + + Sbjct: 232 LIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPE 291 Query: 121 IPNIGIITDVALDPFTIHGHDGILCDG-------EIVNDETIELIS------HAAVIQAD 167 + + + DP + +G + + E + + + ++ A Q D Sbjct: 292 VVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWD 351 Query: 168 AGADIIAPSE---MMDGRVQEIRKKLDSHG 194 G +++ + R L G Sbjct: 352 DGNNVVCLEPGVVVGYDRNTYTNTLLRKAG 381 >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 Score = 28.2 bits (61), Expect = 0.99 Identities = 24/225 (10%), Positives = 63/225 (28%), Gaps = 25/225 (11%) Query: 121 IPNIGIITDVALDPFTIHGHDGILC--------DGEIVNDETIELISHAAVIQADAGADI 172 + + G + + + D + + D Sbjct: 117 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDK 176 Query: 173 IAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY 232 + ++ I+ +L+ + + ++ +A + + + D + Sbjct: 177 VYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQP-----DGSWVNYNYD 231 Query: 233 YLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSGEY 289 ++ + + E + I ML+ + P + + + L Y V + Sbjct: 232 WMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDK 291 Query: 290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 D + +AG +G+FT F +A + L Sbjct: 292 LPEYTP---------DVNQLYDALYNKAGVNGLFTDFPDKAVKFL 327 >d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Score = 27.0 bits (60), Expect = 2.5 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKR 316 + +PGLPY V + +K L ++S + + ++ M+ + Sbjct: 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLS-----YRPRDSNELVPLSEDSMKDAWGQVK 72 Query: 317 AGC 319 C Sbjct: 73 NYC 75 >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 Score = 26.3 bits (56), Expect = 3.4 Identities = 17/156 (10%), Positives = 35/156 (22%), Gaps = 4/156 (2%) Query: 1 MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP 60 + N + + + +S S Sbjct: 116 YYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPY 175 Query: 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN 120 ++ + + + + + F + G H +LI + + + Sbjct: 176 GESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD 235 Query: 121 IPNIGIITDVAL----DPFTIHGHDGILCDGEIVND 152 I +T I G D DG V D Sbjct: 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRD 271 >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} Length = 251 Score = 26.5 bits (58), Expect = 3.6 Identities = 10/28 (35%), Positives = 19/28 (67%) Query: 146 DGEIVNDETIELISHAAVIQADAGADII 173 G++VN+ E++++AA I + GAD + Sbjct: 147 GGKVVNETAPEIVAYAARIALELGADAM 174 >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420 Score = 25.9 bits (55), Expect = 5.0 Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 72 EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIID 105 EK+ + +LG+ AI + P D + G Sbjct: 38 EKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAA 71 >d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 310 Score = 25.7 bits (56), Expect = 6.0 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 72 EKIKQVADLGIPAIAI-FPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI 124 K +++ LG+ + A+ F +I + N + N I+E +K +I + Sbjct: 98 AKFEKMYQLGVRSFAVFFDDISGEGTNPQKQAEL--LNYIDEKFAQVKPDINQL 149 >d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 157 Score = 25.4 bits (55), Expect = 7.6 Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 205 AKFNSSFYGPYRDAISTRDLLKGDKKTYYLDP 236 AK + F P ++ +T D GD Y + Sbjct: 112 AKAAADFSSPVKNFKATYDYEVGDLIKAYDNQ 143 >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Score = 25.0 bits (53), Expect = 8.4 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 148 EIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKF 207 N +T + AG++ I S+++ R++E + S + I Sbjct: 224 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 283 Query: 208 NSSFYGPYRDAISTR---DLLKGDKKT 231 ++ + P+R++ T L GD KT Sbjct: 284 STKRHIPFRNSKLTYLLQYSLTGDSKT 310 >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Score = 24.9 bits (53), Expect = 9.1 Identities = 7/31 (22%), Positives = 14/31 (45%) Query: 279 PTFAYQVSGEYAMIKAASLQGWINKNDAMME 309 P+F+ + MI A +G + ++E Sbjct: 36 PSFSVKCRIGANMIWDAEKRGVLKPGVELVE 66 >d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 61 Score = 24.9 bits (54), Expect = 9.6 Identities = 6/23 (26%), Positives = 12/23 (52%) Query: 54 ESINSMPDVMRMSIDVAVEKIKQ 76 +S MP V +S E++++ Sbjct: 2 QSPYPMPSVKDISPGDLAEELRR 24 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0605 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,307,363 Number of extensions: 63141 Number of successful extensions: 267 Number of sequences better than 10.0: 1 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 33 Length of query: 337 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,226,816 Effective search space: 307930816 Effective search space used: 307930816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.5 bits)