HHsearch alignment for GI: 255764464 and conserved domain: pfam08210
>pfam08210 APOBEC_N APOBEC-like N-terminal domain. A mechanism of generating protein diversity is mRNA editing. Members of this family are C-to-U editing enzymes. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination.APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerization and this complex interacts with RNA binding proteins to from the editosome (and references therein).
Probab=93.21 E-value=0.14 Score=30.42 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=37.5
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHH-H-CCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 99987347354488642511344566664-1-488545411688616776889899986
Q gi|255764464|r 36 IISRAGNRNRELKDVTAHAEILAIRMGCR-I-LSQEILPEVDLYVTLEPCTMCAAAISL 92 (149)
Q Consensus 36 ii~~g~N~~~~~~d~t~HAEi~ai~~a~~-~-~~~~~l~~~tlYtTlEPC~MC~~Ai~~ 92 (149)
T Consensus 40 ~~~~G~l~-n~~~~~~~HaE~~Fl~~~~~~~~~~~~~~y~VTwy~SWSPC~~Ca~~v~~ 97 (116)
T pfam08210 40 SLDRGILR-NEVANTGCHAELCFLEWFGSLRLLPADQRYSVTWYVSWSPCANCAQKVAE 97 (116)
T ss_pred CEECCEEC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf 21002674-67788775289999999744346897776999999653876999999999