Query gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 149
No_of_seqs 109 out of 4406
Neff 6.6
Searched_HMMs 33803
Date Wed Jun 1 12:19:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764464.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2b3j_A TRNA adenosine deamina 100.0 0 0 297.2 15.2 149 1-149 4-152 (159)
2 >2nx8_A TRNA-specific adenosin 100.0 7.3E-44 0 284.1 14.8 148 2-149 14-161 (179)
3 >1z3a_A TRNA-specific adenosin 100.0 1.6E-43 0 282.1 15.7 148 2-149 7-154 (168)
4 >2a8n_A Cytidine and deoxycyti 100.0 1.7E-42 0 275.9 14.9 144 1-144 1-144 (144)
5 >1wwr_A TRNA adenosine deamina 100.0 2.4E-42 0 275.0 15.4 147 2-149 21-167 (171)
6 >3dh1_A TRNA-specific adenosin 100.0 1.5E-41 0 270.2 11.6 148 2-149 24-179 (189)
7 >2g84_A Cytidine and deoxycyti 100.0 7.4E-41 2.8E-45 266.0 12.2 149 1-149 25-184 (197)
8 >2hxv_A Diaminohydroxyphosphor 100.0 8.9E-40 2.7E-44 259.5 10.8 140 2-146 12-153 (154)
9 >1p6o_A Cytosine deaminase; hy 100.0 4.8E-38 1.4E-42 249.1 9.5 140 1-149 11-152 (161)
10 >2g6v_A Riboflavin biosynthesi 100.0 8.1E-38 2.4E-42 247.8 6.8 133 2-141 28-162 (162)
11 >2w4l_A DCMP deaminse, deoxycy 100.0 7.2E-39 2.1E-43 254.1 -1.0 143 1-149 10-168 (178)
12 >2b3z_A Riboflavin biosynthesi 100.0 8.6E-36 2.5E-40 235.6 9.4 134 1-141 11-146 (146)
13 >1vq2_A DCMP deaminase, deoxyc 100.0 2.4E-35 7.2E-40 232.8 7.6 134 3-149 2-135 (137)
14 >1wkq_A Guanine deaminase; dom 100.0 9.7E-32 2.9E-36 211.2 12.0 102 1-102 8-110 (110)
15 >2hvw_A Deoxycytidylate deamin 100.0 2.2E-32 6.4E-37 215.1 8.0 127 2-138 40-181 (184)
16 >1ctt_A Cytidine deaminase; hy 97.8 0.00013 3.9E-09 48.2 8.6 100 1-104 47-151 (173)
17 >1uwz_A Cytidine deaminase; CD 97.8 0.00051 1.5E-08 44.7 10.8 97 1-100 1-104 (136)
18 >3dmo_A Cytidine deaminase; st 97.8 0.00049 1.4E-08 44.8 10.7 90 3-94 10-107 (138)
19 >1r5t_A Cytidine deaminase; zi 97.6 0.00063 1.9E-08 44.1 9.8 86 7-94 14-107 (142)
20 >3b8f_A Putative blasticidin S 97.6 0.00072 2.1E-08 43.7 9.6 97 1-100 1-106 (119)
21 >2fr5_A Cytidine deaminase; zi 97.6 0.0013 3.9E-08 42.2 10.8 95 6-102 17-118 (146)
22 >2d30_A Cytidine deaminase; pu 97.6 0.0016 4.8E-08 41.6 11.0 96 4-101 12-114 (141)
23 >1ctt_A Cytidine deaminase; hy 97.6 0.00065 1.9E-08 44.0 9.0 90 4-94 15-111 (121)
24 >3g8q_A Predicted RNA-binding 97.3 0.00087 2.6E-08 43.3 7.1 65 25-103 23-87 (114)
25 >2z3g_A Blasticidin-S deaminas 97.2 0.0099 2.9E-07 36.9 11.7 85 12-100 11-105 (130)
26 >2nyt_A Probable C->U-editing 95.4 0.015 4.5E-07 35.8 3.5 64 36-102 50-118 (190)
27 >2bl9_A Dihydrofolate reductas 95.1 0.00076 2.2E-08 43.6 -3.8 48 91-147 13-60 (238)
28 >3ir2_A DNA DC->DU-editing enz 93.5 0.12 3.6E-06 30.4 4.6 53 50-102 77-135 (207)
29 >2ehg_A Ribonuclease HI; RNAse 43.4 25 0.00073 16.5 4.4 56 26-81 21-78 (149)
30 >2qkb_A Ribonuclease H1, HS-RN 34.4 14 0.00041 18.0 0.8 60 24-87 23-86 (154)
31 >2fb5_A Hypothetical membrane 33.0 27 0.0008 16.3 2.1 16 27-42 63-78 (132)
32 >3g4p_A Beta-lactamase OXA-24; 31.7 33 0.00097 15.8 2.3 41 10-50 5-48 (244)
33 >2ood_A BLR3880 protein; PSI-I 30.3 40 0.0012 15.2 2.9 19 24-42 33-51 (153)
34 >1zy7_A RNA-specific adenosine 29.5 42 0.0012 15.1 9.5 55 34-88 68-158 (280)
35 >2zuq_A Disulfide bond formati 27.2 17 0.00051 17.4 0.3 10 79-88 37-46 (176)
36 >1k3i_A Galactose oxidase prec 25.9 48 0.0014 14.8 2.6 35 28-62 5-41 (55)
37 >2wem_A Glutaredoxin-related p 23.5 43 0.0013 15.1 1.7 29 72-100 20-55 (118)
38 >2vun_A Enamidase; nicotinate 23.5 40 0.0012 15.2 1.6 19 25-43 23-41 (124)
39 >3icj_A Uncharacterized metal- 23.3 54 0.0016 14.5 2.3 16 26-41 55-70 (144)
40 >3bk3_C Crossveinless 2, bone 21.4 9.4 0.00028 19.0 -2.0 11 77-87 21-31 (47)
No 1
>>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} (A:)
Probab=100.00 E-value=0 Score=297.16 Aligned_cols=149 Identities=37% Similarity=0.615 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 98569999999999998875799808999983890999873473544886425113445666641488545411688616
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL 80 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTl 80 (149)
|++|++||++|+++|+++...|+.|||||||++|+||+.|+|++....||+.|||+++++++....+..++++||||||+
T Consensus 4 ~~~de~~M~~a~~~A~~~~~~g~~pvGaviv~~g~ii~~g~N~~~~~~~~~~Hae~~a~~~a~~~~~~~~l~~~tly~T~ 83 (159)
T 2b3j_A 4 MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTL 83 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 76799999999999998541699988999984663100120210026874211467777899997288777786676524
Q ss_pred CCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 776889899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r 81 EPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 81 EPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
|||+||++||+|+||+||||+..+++.+..++...++....++|+++|++|++++||.+|+++||+++|
T Consensus 84 EPC~mC~~ai~~agI~rVvy~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~gvl~~e~~~l~~~f~~~~~ 152 (159)
T 2b3j_A 84 EPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLR 152 (159)
T ss_dssp CCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 751667889986145648997227998755738899885799999679868199999999999999998
No 2
>>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} (A:)
Probab=100.00 E-value=7.3e-44 Score=284.05 Aligned_cols=148 Identities=36% Similarity=0.563 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 85699999999999988757998089999838909998734735448864251134456666414885454116886167
Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLE 81 (149)
Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE 81 (149)
++|++||++|+++|+++.+.|+.|||||||++|+||+.|+|++....|++.|||+.+++.+.++.+..+|.+||||||+|
T Consensus 14 ~~d~~~m~~Ai~lA~~s~~~g~~pvGaViv~~~~Ii~~g~N~~~~~~~~~~hae~~a~~~a~~~~~~~~l~~~tlY~T~E 93 (179)
T 2nx8_A 14 EEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIE 93 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 89999999999999985136999889999989989998546554434310021556668899860787666650112556
Q ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 76889899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r 82 PCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 82 PC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
||+||++||+|+||+|||||..+++.+..++...++.....+++++|++|++++||.+||+.||+.+|
T Consensus 94 PC~mC~~ai~~agI~rVvyg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~gil~~e~~~ll~~f~~~~~ 161 (179)
T 2nx8_A 94 PCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGR 161 (179)
T ss_dssp CBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 78177778998357716444789988746638898651312899789918689999999999999998
No 3
>>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} (A:)
Probab=100.00 E-value=1.6e-43 Score=282.07 Aligned_cols=148 Identities=39% Similarity=0.555 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 85699999999999988757998089999838909998734735448864251134456666414885454116886167
Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLE 81 (149)
Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE 81 (149)
..|++||++|+++|+++.+.|+.|||||||++|+||+.|+|.+...+|++.|||+.||+++..+.+...+.+||||||+|
T Consensus 7 ~~d~~~m~~A~~~A~~a~~~~~~pVGavIv~~g~Ii~~g~N~~~~~~~~~~hae~~ai~~~~~~~~~~~~~~~tly~T~E 86 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLE 86 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 68999999999999985338999899999989908999601001457530467877777777632464444632530466
Q ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 76889899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r 82 PCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 82 PC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
||+||++||+|+||++||||..+++.+..++...++.....+++++|++|++++||.+|+++||+++|
T Consensus 87 PC~mC~~ai~~sgI~~Vvy~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~vl~~e~~~l~~~f~~~~~ 154 (168)
T 1z3a_A 87 PCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRR 154 (168)
T ss_dssp CCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 62567768987477768985313787756736888871678999689908289999999999999997
No 4
>>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} (A:)
Probab=100.00 E-value=1.7e-42 Score=275.90 Aligned_cols=144 Identities=60% Similarity=1.059 Sum_probs=141.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 98569999999999998875799808999983890999873473544886425113445666641488545411688616
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL 80 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTl 80 (149)
|++|++||++|+++|+++.+.++.|||||||++|+||+.|+|.+....|++.|+|+.+++++..+.+..+++|+|||||+
T Consensus 1 l~~d~~~m~~A~~~a~~~~~~~~~~vGaViv~~~~ii~~g~n~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~tlY~T~ 80 (144)
T 2a8n_A 1 MAERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTL 80 (144)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEEEEECCCCCEECCHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 96169999999999998620599989999998998999765444203552211227799999997276667774541254
Q ss_pred CCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 7768898999860888599971179885017413444316899998799282189999998999
Q gi|255764464|r 81 EPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDF 144 (149)
Q Consensus 81 EPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~f 144 (149)
|||+||++||+|+||+|||||..+++.|+.++..+++....++++++|++|++++||.+|+++|
T Consensus 81 ePC~mC~~ai~~agI~rVvy~~~~~~~~~~~~~~~~l~~~~i~~~~~v~~~vl~~~~~~l~~~f 144 (144)
T 2a8n_A 81 EPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred CCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCC
T ss_conf 5415799999996178699982189987656287887605899998899296899999998578
No 5
>>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} (A:)
Probab=100.00 E-value=2.4e-42 Score=274.98 Aligned_cols=147 Identities=39% Similarity=0.595 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 85699999999999988757998089999838909998734735448864251134456666414885454116886167
Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLE 81 (149)
Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE 81 (149)
.+|++||++|+++|+++.+.|+.|||||||++|+||+.|+|++....|++.|+|+.++++|....+...++|+|||||+|
T Consensus 21 ~~d~~~m~~ai~~A~~~~~~g~~~vGAViv~~~~ii~~g~n~~~~~~~~~~h~e~~a~~~a~~~~~~~~l~g~tlYtT~E 100 (171)
T 1wwr_A 21 MGKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLE 100 (171)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 59999999999999986336999899999989916855435203478764305889999998763002336767750357
Q ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 76889899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r 82 PCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 82 PC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
||+||++||+|+||+||||+..+++.++.++..++......++.++|++|+ .+|+.+|+++||+++|
T Consensus 101 PC~mC~~ai~~agi~rVvy~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~e~~~ll~~f~~~~~ 167 (171)
T 1wwr_A 101 PCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYP-LEEASELLSEFFKKLR 167 (171)
T ss_dssp CBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEC-HHHHHHHHHHHHHHHH
T ss_conf 880788889986478589984679998344488887643248998899733-9999999999999974
No 6
>>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens} (A:)
Probab=100.00 E-value=1.5e-41 Score=270.19 Aligned_cols=148 Identities=29% Similarity=0.505 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHC------CCCCCCCEE
Q ss_conf 85699999999999988757998089999838909998734735448864251134456666414------885454116
Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL------SQEILPEVD 75 (149)
Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~------~~~~l~~~t 75 (149)
..|++||++|+++|+++.+.|+.|||||||++|+||+.|+|.+....|++.|+|+.+++.+.... ++.+++|||
T Consensus 24 ~~~~~~m~~Ai~~A~~~~~~~~~~vGAVIv~~~~ii~~g~n~~~~~~~~~~h~e~~~i~~a~~~~~~~~~~~~~~l~g~t 103 (189)
T 3dh1_A 24 EETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTV 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88999999999999986316999889999989989999721345445453406999999999752010245542036873
Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCC--CCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 886167768898999860888599971179885017413444316--89999879928218999999899988409
Q gi|255764464|r 76 LYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA--TCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 76 lYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~--~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
||||+|||+||++||+|+||+|||||..+|+.+..++...+.... ..++.+++++|++++||.+|++.||+++|
T Consensus 104 lYtT~EPC~mCa~ai~~agi~rVvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~e~~~l~~~f~~~~~ 179 (189)
T 3dh1_A 104 LYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQEN 179 (189)
T ss_dssp EEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC--
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 0116677768999999868885899720799876573257666554223999189889579999999999999857
No 7
>>2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region; structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea atcc 19718} (A:)
Probab=100.00 E-value=7.4e-41 Score=266.00 Aligned_cols=149 Identities=20% Similarity=0.257 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE--CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC-----CCCCC
Q ss_conf 98569999999999998875799808999983--890999873473544886425113445666641488-----54541
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQ-----EILPE 73 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~--~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~-----~~l~~ 73 (149)
++.|++||++|+++|+++...|+.|||||||+ +|+||+.|+|++....|++.|+|+.+|+++...+.. ..++|
T Consensus 25 ~~~d~~~m~~A~~~A~~s~~~~~~pvGAViV~~~~g~Ii~~g~N~~~~~~~~~~h~e~~ai~~~~~~~~~~~~~~~~~~~ 104 (197)
T 2g84_A 25 LAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPA 104 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 78879999999999999987699988999998899989998718667689997459999999999985353211223358
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHH----HHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 1688616776889899986088859997117988501741344----431689999879928218999999899988409
Q gi|255764464|r 74 VDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQF----YTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 74 ~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~----~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
+|||||+|||+||++||+|+||++|||+..+++.++.+..... ......++.++|++|++++||.+|++.||+++|
T Consensus 105 ~tlY~T~EPC~mC~~ai~~~gi~~Vvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~~~vl~~e~~~l~~~~~~~~~ 184 (197)
T 2g84_A 105 CELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACNG 184 (197)
T ss_dssp EEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHHCS
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 46882057864676666543589899986089754467653302777755876599989888779999999999998089
No 8
>>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} (A:1-154)
Probab=100.00 E-value=8.9e-40 Score=259.52 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 85699999999999988757--9980899998389099987347354488642511344566664148854541168861
Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALR--NEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT 79 (149)
Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~--g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT 79 (149)
..|++||++|+++|+++... +++|||||||++|+||+.|+|++....+++.|+|+.++.++..+++...+.+||||||
T Consensus 12 ~~d~~~m~~A~~~A~~a~~~~~~~~~VGAViV~~~~vi~~g~n~~~~~~~~~~~~e~~a~~~~~~~~~~~~~~~~tly~T 91 (154)
T 2hxv_A 12 HXYETFXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGEDLRGATLIVTLEPCDH 91 (154)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 48999999999999753776689998899999899899998289999868999999999874767678789997786443
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 6776889899986088859997117988501741344431689999879928218999999899988
Q gi|255764464|r 80 LEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFK 146 (149)
Q Consensus 80 lEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~ 146 (149)
+|||+||++||+|+||+|||||+.||+.++.++...+. ++.++|+.|++++||++|+++||+
T Consensus 92 ~ePC~mCa~ai~~agI~rVv~~~~~~~~~~~~~~~~l~-----~~gi~V~~~~~~~e~~~l~~~f~~ 153 (154)
T 2hxv_A 92 HGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFR-----NHGIEVIEGVLEEEVKKLCEFFIT 153 (154)
T ss_dssp CSSSCCHHHHHHHHTCCEEEEEECCCCGGGCCHHHHHH-----TTTCEEEECTTHHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHC-----CCCCEEEEECCCCCCCCCCCCCHH
T ss_conf 55652066678861799999995336445646621100-----357325410122332122232033
No 9
>>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} (A:)
Probab=100.00 E-value=4.8e-38 Score=249.10 Aligned_cols=140 Identities=24% Similarity=0.358 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE--ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 9856999999999999887579980899998--38909998734735448864251134456666414885454116886
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAV--LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV 78 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv--~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt 78 (149)
+++|++||++|+++|+++...|+.||||||| ++|+||+.|+|++....+++.|+|+.++..+. .++..++++|||||
T Consensus 11 ~~~d~~~m~~a~~~A~~~~~~~~~~vGAviv~~~dg~ii~~g~n~~~~~~~~~~h~~~~~~~~a~-~~~~~~l~~~tly~ 89 (161)
T 1p6o_A 11 SKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCG-RLEGKVYKDTTLYT 89 (161)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHC-SCCHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH-HCCCCCCCCCEEEE
T ss_conf 79999999999999999877699998999998499959999705543379997579899998764-12797677836896
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 16776889899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r 79 TLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 79 TlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
|+|||+||++||+|+||+|||||..||+.|... ..+. +...++.|++++||.+|+++||+.+|
T Consensus 90 t~EPC~mC~~ai~~agI~rVvy~~~~~~~g~~~---~~l~-----~~~~~v~~v~~~e~~~l~~~f~~~~~ 152 (161)
T 1p6o_A 90 TLSPCDMCTGAIIMYGIPRCVVGENVNFKSKGE---KYLQ-----TRGHEVVVVDDERCKKIMKQFIDERP 152 (161)
T ss_dssp EECCCHHHHHHHHHHTCCEEEEEESSSCCCTHH---HHHH-----HTTCEEEECCCHHHHHHHHHHHHHCH
T ss_pred ECCCCHHHHHHHHHHCCCEEEECCCCCCCCCHH---HHHH-----HCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 068879999999997929899927998786349---9998-----68977976189999999999999811
No 10
>>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* (A:1-162)
Probab=100.00 E-value=8.1e-38 Score=247.75 Aligned_cols=133 Identities=16% Similarity=0.156 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 85699999999999988757--9980899998389099987347354488642511344566664148854541168861
Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALR--NEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT 79 (149)
Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~--g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT 79 (149)
++|++||++|+++|+++... |+.|||||||++|+||+.|+|++....|++.|||+.++.++.. ...+.++|||||
T Consensus 28 ~~d~~~m~~A~~~A~~~~~~~~~~~~vGAViv~~g~ii~~g~N~~~~~~~~~~~a~~~a~~~~~~---~~~~~~~tlYtT 104 (162)
T 2g6v_A 28 GQDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGEKAKG---ATAYVTLEPCSH 104 (162)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHHGGGGGS---SCEEESSCCC--
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC---CEEEEECCCCCC
T ss_conf 47999999999999856888899998899999899999998689999989999999985287459---889995686146
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 67768898999860888599971179885017413444316899998799282189999998
Q gi|255764464|r 80 LEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQII 141 (149)
Q Consensus 80 lEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll 141 (149)
+|||+||++||+|+||+|||||..||+.+..++...++...+ ++|++||+++||.+|+
T Consensus 105 ~ePC~mCa~ai~~~gi~rVvyg~~~~~~~~~~~~~~~l~~~g----ieV~~gvl~~e~~~L~ 162 (162)
T 2g6v_A 105 HGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAG----IDVSHGLXXSEAEQLN 162 (162)
T ss_dssp -----CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTT----CCEEECTTTTHHHHHT
T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCHHHCCCCHHHHCCCC----CEECCCCCCHHHHHHH
T ss_conf 787534787876434143765446888121685045433487----1012364310168888
No 11
>>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} (A:)
Probab=100.00 E-value=7.2e-39 Score=254.07 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCC---------------CCHHHHHHHHHHH
Q ss_conf 9856999999999999887579980899998389099987347354488642---------------5113445666641
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTA---------------HAEILAIRMGCRI 65 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~---------------HAEi~ai~~a~~~ 65 (149)
++.|++||++|+++|+++...|+.|+|+|++++|+||+.|+|++....|++. |+|+.|+++|.+.
T Consensus 10 ~~~d~~~m~~A~~~A~~s~~~~~~~gaviv~~dg~Ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~A~~~a~~~ 89 (178)
T 2w4l_A 10 LEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMN 89 (178)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 77999999999999973699999838999988942055032678888766443200002255433332104065999873
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHH-HHHCCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 48854541168861677688989998608885999711798850174134-44316899998799282189999998999
Q gi|255764464|r 66 LSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQ-FYTLATCHHSPEIYPGISEQRSRQIIQDF 144 (149)
Q Consensus 66 ~~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~-~~~~~~~~~~~~v~~gvl~ee~~~Ll~~f 144 (149)
++.++++++|||||+|||+||++||+|+||+|||||..+|+.|++++... +... ..|..+++++||.+||++|
T Consensus 90 ~~~~~~~~~tlYvT~ePC~mCa~ai~~agI~~Vvy~~~~~~~~~~~~~~~~~~~~------~~v~~~~l~~e~~~ll~~f 163 (178)
T 2w4l_A 90 KNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNM------AGVTFRKFIPKCSKIVIDF 163 (178)
T ss_dssp ----CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHH------HTCEEEECCCSCSEEEEEG
T ss_pred HCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH------CCCEEEECCHHHHHHHHHH
T ss_conf 3678878975897589879999999995979899964579982777999999998------8999998875488898749
Q ss_pred HHHHC
Q ss_conf 88409
Q gi|255764464|r 145 FKERR 149 (149)
Q Consensus 145 f~~kR 149 (149)
|+++|
T Consensus 164 ~~~~~ 168 (178)
T 2w4l_A 164 DSINS 168 (178)
T ss_dssp GGC--
T ss_pred HHHCC
T ss_conf 98668
No 12
>>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} (A:1-146)
Probab=100.00 E-value=8.6e-36 Score=235.58 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCC--EEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 9856999999999999887579980--89999838909998734735448864251134456666414885454116886
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIP--VGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV 78 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~P--vGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt 78 (149)
+.+|++||++|+++|+++...|++| ||||||++|+||+.|+|++....+++.|+|+.+++.+.. ...++++||||
T Consensus 11 ~~~d~~~M~~A~~~A~~s~~~~~~~~~vGAViv~~g~ii~~G~N~~~~~~~~~~~a~~~a~~~~~~---~~~~~~~tlY~ 87 (146)
T 2b3z_A 11 GSMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG---ADIYVTLEPCS 87 (146)
T ss_dssp --CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHHGGGGTT---CEEEESSCCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHCHHCCC---CEEEEECCCCC
T ss_conf 529999999999999751667799999899999899999998689999879999999973622159---87999756766
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 167768898999860888599971179885017413444316899998799282189999998
Q gi|255764464|r 79 TLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQII 141 (149)
Q Consensus 79 TlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll 141 (149)
|+|||+||++||+|+||+|||||..+|+.+..++...++.... ++|++|++++||.+|+
T Consensus 88 T~ePC~mCa~ai~~agI~rVv~g~~~~~~~~~~~~~~~l~~~g----i~v~~gv~~~e~~~ln 146 (146)
T 2b3z_A 88 HYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAG----IEVREGILADQAERLN 146 (146)
T ss_dssp CCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTT----CEEEECTTHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCC----CEEEECCCCCCHHHCC
T ss_conf 4677617789998737886999525699665884588876079----5586565322101101
No 13
>>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} (A:1-45,A:102-193)
Probab=100.00 E-value=2.4e-35 Score=232.85 Aligned_cols=134 Identities=26% Similarity=0.299 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 56999999999999887579980899998389099987347354488642511344566664148854541168861677
Q gi|255764464|r 3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEP 82 (149)
Q Consensus 3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEP 82 (149)
+|++||++|+-+|+++... .-|||||||++|+||+.|||.. ...|.|||++||+++++... +++++|||||+||
T Consensus 2 ~~~~~~~~a~~~~~~~~~~-~~~vg~~~~~~~~i~~~g~~~~---p~~t~HAEi~Ai~~a~~~~~--~l~g~tlYvTlEP 75 (137)
T 1vq2_A 2 KASTVLQIAYLVSQESKCC-SWKVGAVIEKNGRIISTGYNGS---PAGEIHAELNAILFAAENGS--SIEGATMYVTLSP 75 (137)
T ss_dssp CHHHHHHHHHHHHTTCCCS-SBCCEEEEEETTEEEEEEECBC---CTTCBCHHHHHHHHHHHHTC--CCTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHCCCC-CCCEEEEEEECCEEEEEECCCC---CCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCC
T ss_conf 8799999999999768999-9985799997998999733788---76775689999999886168--9877568706799
Q ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 6889899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r 83 CTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149)
Q Consensus 83 C~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149)
|+||++||+|+||++||||..||+.++. ....+...+ ++|. +|+++||.+|+++||++.|
T Consensus 76 C~mCa~aii~aGI~rVvyg~~~p~~~~~--~~~~L~~~g----I~V~-~vl~ee~~~l~~~F~~~~~ 135 (137)
T 1vq2_A 76 CPDCAKAIAQSGIKKLVYCETYDKNKPG--WDDILRNAG----IEVF-NVPKKNLNKLNWENINEFC 135 (137)
T ss_dssp CHHHHHHHHHHTCCEEEEEECCTTCCTT--TTHHHHHTT----CEEE-ECCGGGCCSSCGGGCCCBC
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCHH--HHHHHHHCC----CEEE-EECHHHHHHHHHHHHHHHH
T ss_conf 6789999983047789996179995189--999999879----9899-6099999999999999984
No 14
>>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} (A:1-110)
Probab=99.97 E-value=9.7e-32 Score=211.23 Aligned_cols=102 Identities=35% Similarity=0.520 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 98569999999999998875799-80899998389099987347354488642511344566664148854541168861
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNE-IPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT 79 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~-~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT 79 (149)
+.+|+.||++|+++|+++...+. .|||||||++|++|+.|+|+.....|++.|+|+.++.++..+...+++++++||||
T Consensus 8 ~~~~~~~M~~A~~~A~~s~~~~~~~pvGaViv~~~~~i~~~~n~~~~~~~~~~~~e~~a~~~a~~~~~~~~~~~~~ly~T 87 (110)
T 1wkq_A 8 AMNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (110)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 75999999999999998634689998899999799216763112416677644689999999988418643378689996
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 67768898999860888599971
Q gi|255764464|r 80 LEPCTMCAAAISLARIRRLYYGA 102 (149)
Q Consensus 80 lEPC~MC~~Ai~~agI~rVvyg~ 102 (149)
+|||+||++||+|+||+|||||+
T Consensus 88 ~EPC~mCa~ai~~agI~rVv~ga 110 (110)
T 1wkq_A 88 CEPCPMCLGAIYWARPKAVFYAA 110 (110)
T ss_dssp ECCCHHHHHHHHHHCCSEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 57886689999974589899997
No 15
>>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* (A:)
Probab=99.97 E-value=2.2e-32 Score=215.15 Aligned_cols=127 Identities=24% Similarity=0.187 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCC---------------CCCCHHHHHHHHHHHC
Q ss_conf 8569999999999998875799808999983890999873473544886---------------4251134456666414
Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDV---------------TAHAEILAIRMGCRIL 66 (149)
Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~---------------t~HAEi~ai~~a~~~~ 66 (149)
..|++||++|+++|+++ ..++.|||||||+++++|+.|+|++....++ +.|||++||+++.+.
T Consensus 40 ~~d~~~M~~A~~~A~~s-~~~~~~vGaviv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hae~~ai~~~~~~- 117 (184)
T 2hvw_A 40 SWQDYFMANAELISKRS-TCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE- 117 (184)
T ss_dssp CHHHHHHHHHHHHGGGC-CCTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-
T ss_conf 99999999999999854-9999988899998995798842777889985311122012555233314656307776654-
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHH
Q ss_conf 885454116886167768898999860888599971179885017413444316899998799282189999
Q gi|255764464|r 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSR 138 (149)
Q Consensus 67 ~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~ 138 (149)
.+.++|+|||||+|||+||++||+|+||+||||+..||+.|+.++.++.+. ++|+.+++++||.
T Consensus 118 -~~~~~~~~lY~T~ePC~mCa~al~~sgI~rVvy~~~~~~~g~~~~~l~~~g-------i~v~~~~~~~e~~ 181 (184)
T 2hvw_A 118 -GISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKE-------VEYVQHDVPRVKL 181 (184)
T ss_dssp -TCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHHHHHHHHHHT-------CEEEECCCCCCCC
T ss_pred -HCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCC-------CEEEECCCCCCCC
T ss_conf -302245555866889789999999849898998446689819999999879-------9899788553425
No 16
>>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} (A:1-173)
Probab=97.83 E-value=0.00013 Score=48.16 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEE-ECCEEEEEEECCCCC--CCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9856999999999999887579-980899998-389099987347354--488642511344566664148854541168
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRN-EIPVGAVAV-LNNKIISRAGNRNRE--LKDVTAHAEILAIRMGCRILSQEILPEVDL 76 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g-~~PvGaviv-~~g~ii~~g~N~~~~--~~d~t~HAEi~ai~~a~~~~~~~~l~~~tl 76 (149)
|+.++..++.|.+.+++++... +.+|||++. ++|+|. .|.|--+- ...++.|||..||-++...... .--.+
T Consensus 47 ~~~~~~L~~~A~~a~~~ay~PyS~~~VgAal~~~dG~i~-~G~nvEna~~~~~~~~cAE~~Ai~~a~~~g~~---~i~~i 122 (173)
T 1ctt_A 47 LDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEK---ALAAI 122 (173)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCC---CEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC---EEEEE
T ss_conf 999999999999999746298679946899994899899-97721247887887430899999999984897---17999
Q ss_pred EECCCCCHHHHHHHHHCCCC-EEEEEECC
Q ss_conf 86167768898999860888-59997117
Q gi|255764464|r 77 YVTLEPCTMCAAAISLARIR-RLYYGASN 104 (149)
Q Consensus 77 YtTlEPC~MC~~Ai~~agI~-rVvyg~~d 104 (149)
++..-||-+|-..|..-+=. .+++-..+
T Consensus 123 ~v~~~PCG~CRQ~L~E~~~~~~~~v~~~~ 151 (173)
T 1ctt_A 123 TVNYTPCGHCRQFMNELNSGLDLRIHLPG 151 (173)
T ss_dssp EESSCCCHHHHHHHTTBTTGGGCEEECTT
T ss_pred EEECCCCCCHHHHHHHHCCCCCEEEEECC
T ss_conf 99779984458999972689856999789
No 17
>>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} (A:)
Probab=97.77 E-value=0.00051 Score=44.65 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 9856999999999999887579-9808999983-8909998734735448864251134456666414885454116886
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRN-EIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV 78 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g-~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt 78 (149)
|+.++ ..+.|.+...+++... +.||||++.. +|+|. .|.|--+....++.|||..||-++...-.. .+....++.
T Consensus 1 me~~~-L~~~a~~a~~~ay~pyS~~~VgAai~~~~G~iy-~G~nvE~a~~~~~~CAE~~Ai~~~~~~g~~-~i~~i~iv~ 77 (136)
T 1uwz_A 1 MNRQE-LITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDT-EFQMLAVAA 77 (136)
T ss_dssp CCHHH-HHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCC-CEEEEEEEE
T ss_pred CCHHH-HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCEEEEEEHHHHHCCCC-CEEEEEEEC
T ss_conf 98899-999999999728397568958999995899999-887212455557634155410121211200-023678862
Q ss_pred C----CCCCHHHHHHHHHCC-CCEEEE
Q ss_conf 1----677688989998608-885999
Q gi|255764464|r 79 T----LEPCTMCAAAISLAR-IRRLYY 100 (149)
Q Consensus 79 T----lEPC~MC~~Ai~~ag-I~rVvy 100 (149)
. +-||-+|-..|...+ -.-.|+
T Consensus 78 ~~~~~~~PCG~CRq~L~e~~~~~~~v~ 104 (136)
T 1uwz_A 78 DTPGPVSPCGACRQVISELCTKDVIVV 104 (136)
T ss_dssp SCSSSCCCCHHHHHHHHHHSCTTCEEE
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 888776656889999998378985899
No 18
>>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} (A:)
Probab=97.77 E-value=0.00049 Score=44.77 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHHHHHC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE--
Q ss_conf 5699999999999988757-99808999983-8909998734735448864251134456666414885454116886--
Q gi|255764464|r 3 KGNVFMSCALEEAQNAALR-NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV-- 78 (149)
Q Consensus 3 ~d~~~M~~A~~~A~~a~~~-g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt-- 78 (149)
+++..++.|.+.+.+++.. .+.+|||++.. +|+|. .|.|--+...+++-|||..||-++...-... ..-..+++
T Consensus 10 ~~~~L~~~A~~a~~~ayaPyS~~~VgAai~~~~G~i~-~G~nvEna~~~~~lcAE~~Ai~~a~~~g~~~-~~~~~~~~~~ 87 (138)
T 3dmo_A 10 THHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRP-GEFAAIAVVG 87 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCT-TCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CCEEEEEEEC
T ss_conf 9999999999999837597568938999993799999-9887305667876479999999999849987-7189999977
Q ss_pred ----CCCCCHHHHHHHHHCC
Q ss_conf ----1677688989998608
Q gi|255764464|r 79 ----TLEPCTMCAAAISLAR 94 (149)
Q Consensus 79 ----TlEPC~MC~~Ai~~ag 94 (149)
..-||-+|-..|...+
T Consensus 88 ~~~~~~~PCG~CRq~l~e~~ 107 (138)
T 3dmo_A 88 ETHGPIAPCGACRQVMIELG 107 (138)
T ss_dssp SCSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHC
T ss_conf 88887486288999999717
No 19
>>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=97.65 E-value=0.00063 Score=44.09 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE------
Q ss_conf 999999999988757-99808999983-8909998734735448864251134456666414885454116886------
Q gi|255764464|r 7 FMSCALEEAQNAALR-NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV------ 78 (149)
Q Consensus 7 ~M~~A~~~A~~a~~~-g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt------ 78 (149)
..+.|.+.+.+++.. .+.||||++.. +|+|. .|.|-.+....++-|||..||-++...-... .....+.+
T Consensus 14 L~~~A~~a~~~ayapyS~~~VgAa~~~~dG~i~-~G~nvEna~~~~slcAE~~Ai~~a~~~g~~~-~~~~~v~~~~~~~~ 91 (142)
T 1r5t_A 14 LKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRS-GWKCMVICGDSEDQ 91 (142)
T ss_dssp HHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCS-CCCEEEEEESCSSS
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHHCCCC-CEEEEEEEECCCCC
T ss_conf 999999999718088669937899997899999-8575225666887499899999999817987-43899999358877
Q ss_pred CCCCCHHHHHHHHHCC
Q ss_conf 1677688989998608
Q gi|255764464|r 79 TLEPCTMCAAAISLAR 94 (149)
Q Consensus 79 TlEPC~MC~~Ai~~ag 94 (149)
..-||-+|-..|...+
T Consensus 92 ~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 92 CVSPCGVCRQFINEFV 107 (142)
T ss_dssp CCCCCHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC
T ss_conf 7798688999999957
No 20
>>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, PSI-2, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} (A:1-119)
Probab=97.61 E-value=0.00072 Score=43.74 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE-
Q ss_conf 98569999999999998875799808999983-8909998734735448864251134456666414885454116886-
Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV- 78 (149)
Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt- 78 (149)
|+.|..+.+.|.+....+.- .+.||||++.. +|+|. .|-|--+....++.|||..||-++...-. ..+....+..
T Consensus 1 M~~~~~L~~~A~~a~~~~~y-S~f~VgAal~~~dG~i~-~G~nvE~~~~~~~lCAE~~Ai~~a~~~g~-~~i~~i~v~~~ 77 (119)
T 3b8f_A 1 LNIEQQLYDVVKQLIEQRYP-NDWGGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQK-KVTHSICLARE 77 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHCS-SSCEEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTC-CEEEEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCEE-EEEEECCCCCCCCHHHHHHHHHHHHHCCC-CCEEEEEEEEC
T ss_conf 97799999999999986385-78966999996799799-98710566677423589999999997799-74689999972
Q ss_pred -------CCCCCHHHHHHHHHCCCCEEEE
Q ss_conf -------1677688989998608885999
Q gi|255764464|r 79 -------TLEPCTMCAAAISLARIRRLYY 100 (149)
Q Consensus 79 -------TlEPC~MC~~Ai~~agI~rVvy 100 (149)
-+-||-+|-..|...+=.--|+
T Consensus 78 ~~~~~~~~~~PCG~CRQ~l~e~~~~~~v~ 106 (119)
T 3b8f_A 78 NEHSELKVLSPCGVCQERLFYWGPEVQCA 106 (119)
T ss_dssp STTSCCEECCCCHHHHHHHGGGCTTCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 89886431576477999999868985899
No 21
>>2fr5_A Cytidine deaminase; zinc, tetrahydrouridine, protein- inhibitor complex, alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} (A:)
Probab=97.60 E-value=0.0013 Score=42.20 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC----
Q ss_conf 9999999999988757-99808999983-89099987347354488642511344566664148854541168861----
Q gi|255764464|r 6 VFMSCALEEAQNAALR-NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT---- 79 (149)
Q Consensus 6 ~~M~~A~~~A~~a~~~-g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT---- 79 (149)
..++.|.+...+++.. .+.||||++.. +|+|. .|.|--+...+++-|||..||-++...- ...+....+.+.
T Consensus 17 ~L~~~A~~a~~~ayapyS~~~vgAav~~~~G~iy-~G~nvEna~~~~~lcAEr~Ai~~a~~~g-~~~~~~i~v~~~~~~~ 94 (146)
T 2fr5_A 17 RLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEG-YKDFRAIAISSDLQEE 94 (146)
T ss_dssp HHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCSSS
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCCCC
T ss_conf 9999999999728387669946699995899999-9886125676566306664453232317-8646899863156788
Q ss_pred -CCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf -67768898999860888599971
Q gi|255764464|r 80 -LEPCTMCAAAISLARIRRLYYGA 102 (149)
Q Consensus 80 -lEPC~MC~~Ai~~agI~rVvyg~ 102 (149)
+-||-+|-..|...+=.--|+-.
T Consensus 95 ~~~PCG~CRq~L~e~~~~~~v~~~ 118 (146)
T 2fr5_A 95 FISPCGACRQVMREFGTDWAVYMT 118 (146)
T ss_dssp CCCCCHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 647756566899961999579998
No 22
>>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} (A:)
Probab=97.58 E-value=0.0016 Score=41.64 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC--
Q ss_conf 699999999999988757-99808999983-89099987347354488642511344566664148854541168861--
Q gi|255764464|r 4 GNVFMSCALEEAQNAALR-NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT-- 79 (149)
Q Consensus 4 d~~~M~~A~~~A~~a~~~-g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT-- 79 (149)
++...+.|.+...+++.. .+.||||++.. +|+|. .|.|--+....++-|||..||-++.... ...+....++..
T Consensus 12 ~~~L~~~A~~a~~~ay~pyS~~~VgAal~~~~G~i~-~G~nvEn~~~~~~~cAE~~Ai~~a~~~g-~~~i~~i~vv~~~~ 89 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHCC-CCEEEEEEEECCCC
T ss_conf 999999999999728288568958999996799999-9972023577764288887667875268-63178999983886
Q ss_pred --CCCCHHHHHHHHHCC-CCEEEEE
Q ss_conf --677688989998608-8859997
Q gi|255764464|r 80 --LEPCTMCAAAISLAR-IRRLYYG 101 (149)
Q Consensus 80 --lEPC~MC~~Ai~~ag-I~rVvyg 101 (149)
.-||-||-..|...+ -.-.|+-
T Consensus 90 ~~~sPCG~CRq~l~e~~~~~~~v~i 114 (141)
T 2d30_A 90 RPVPPCGACRQVMVELCKQDTKVYL 114 (141)
T ss_dssp SCCCCCHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 5579988899999996689968999
No 23
>>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} (A:174-294)
Probab=97.57 E-value=0.00065 Score=44.00 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCEEEEEC-
Q ss_conf 6999999999999887579-9808999983-890999873473544886425113445666641488-54541168861-
Q gi|255764464|r 4 GNVFMSCALEEAQNAALRN-EIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQ-EILPEVDLYVT- 79 (149)
Q Consensus 4 d~~~M~~A~~~A~~a~~~g-~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~-~~l~~~tlYtT- 79 (149)
++...+.|++.+++++... +.||||++.. +|+|. .|.|--+...+++.|||..||-++...-.. .+.....+...
T Consensus 15 ~~~L~~~A~~a~~~syaPyS~~~vgaal~~~~G~iy-~G~nvEna~~~~slcaE~~Ai~~a~~~g~~~~~i~~i~~~~~~ 93 (121)
T 1ctt_A 15 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 93 (121)
T ss_dssp SSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 589999999999834598558954368995899999-9887750567887589999999999759984667899999379
Q ss_pred ---CCCCHHHHHHHHHCC
Q ss_conf ---677688989998608
Q gi|255764464|r 80 ---LEPCTMCAAAISLAR 94 (149)
Q Consensus 80 ---lEPC~MC~~Ai~~ag 94 (149)
+-||-||-..|..-+
T Consensus 94 ~~~~sPCG~CRq~L~e~~ 111 (121)
T 1ctt_A 94 DAPLIQWDATSATLKALG 111 (121)
T ss_dssp TCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 998681899999999857
No 24
>>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} (A:1-114)
Probab=97.33 E-value=0.00087 Score=43.25 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=53.8
Q ss_pred CEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899998389099987347354488642511344566664148854541168861677688989998608885999711
Q gi|255764464|r 25 PVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGAS 103 (149)
Q Consensus 25 PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~ 103 (149)
.|-|.+...|+|++... ..|. |||....++ .+..|-.+|+|..||.-|+..+..+|+.-|||--.
T Consensus 23 tvtaalleggeivavee-----adde--haerklvrr-------hdvegkvvfvtarpclycarelaeagvagvvylgr 87 (114)
T 3g8q_A 23 TVTAALLEGGEIVAVEE-----ADDE--HAERKLVRR-------HDVEGKVVFVTARPCLYCARELAEAGVAGVVYLGR 87 (114)
T ss_dssp SCEEEEEETTEEEEEEE-----CSSS--CHHHHHHHH-------SCCTTCEEEESSCCCHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEC-----CCHH--HHHHHHHHH-------HCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECC
T ss_conf 64698755870898850-----4616--777766765-------05663399997651788899987555205899615
No 25
>>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} (A:)
Probab=97.24 E-value=0.0099 Score=36.91 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=53.7
Q ss_pred HHHHHH---HHHC-CCCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-----CC
Q ss_conf 999998---8757-9980899998-389099987347354488642511344566664148854541168861-----67
Q gi|255764464|r 12 LEEAQN---AALR-NEIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT-----LE 81 (149)
Q Consensus 12 ~~~A~~---a~~~-g~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT-----lE 81 (149)
++.|+. ++.. ...||||++. ++|+|.. |-|- +....+.|||..||-++...-.. .+......+. ..
T Consensus 11 ~~~A~~a~~a~~PyS~f~VgAa~~t~~G~i~~-G~nv--En~s~~lCAE~~Ai~~a~~~g~~-~~~~~~~v~~~~~~~~~ 86 (130)
T 2z3g_A 11 IERATATINSIPISEDYSVASAALSSDGRIFT-GVNV--YHFTGGPCAELVVLGTAAAAAAG-NLTCIVAIGNENRGILS 86 (130)
T ss_dssp HHHHHHHHHHSCCCSSSCEEEEEEETTSCEEE-EECC--CCTTTCCCHHHHHHHHHHHTTCC-CEEEEEEEETTTTEEEC
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEECCCCEEE-EEEE--CCCCCCCCHHHHHEEHHCCCCCC-CEEEEEEEECCCCCCCC
T ss_conf 99999998536988898689999948999999-8621--26777751553110011022354-30799999779887678
Q ss_pred CCHHHHHHHHHCCCCEEEE
Q ss_conf 7688989998608885999
Q gi|255764464|r 82 PCTMCAAAISLARIRRLYY 100 (149)
Q Consensus 82 PC~MC~~Ai~~agI~rVvy 100 (149)
||-+|-..|...+=.--|+
T Consensus 87 PCG~CRq~l~e~~~~~~v~ 105 (130)
T 2z3g_A 87 PCGRCRQVLLDLHPGIKAI 105 (130)
T ss_dssp CCHHHHHHHHHHCTTCEEE
T ss_pred CCHHHHHHHHHHCCCCEEE
T ss_conf 8678999999978997799
No 26
>>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} (A:)
Probab=95.38 E-value=0.015 Score=35.78 Aligned_cols=64 Identities=25% Similarity=0.260 Sum_probs=49.3
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH-----CCCCEEEEEE
Q ss_conf 999873473544886425113445666641488545411688616776889899986-----0888599971
Q gi|255764464|r 36 IISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISL-----ARIRRLYYGA 102 (149)
Q Consensus 36 ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~-----agI~rVvyg~ 102 (149)
.+..|+.+ ..++..|||+.-|.+....+.+..-=.-|=|+|=.||+-||..+.. -.++=.||.+
T Consensus 50 ~~~~G~~~---nq~~~~HAE~~Fl~~i~~~l~p~~~y~ITwy~SWSPC~~CA~~ia~FL~~~~~v~L~If~a 118 (190)
T 2nyt_A 50 QASRGYLE---DEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVG 118 (190)
T ss_dssp EEEEEEEE---ESSCSSCHHHHHHHHTSCCCCTTCEEEEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCEEEC---CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 52315856---8888670899999998862297745899999634976999999999997799908998821
No 27
>>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A* (A:)
Probab=95.12 E-value=0.00076 Score=43.62 Aligned_cols=48 Identities=6% Similarity=-0.195 Sum_probs=35.0
Q ss_pred HHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHH
Q ss_conf 860888599971179885017413444316899998799282189999998999884
Q gi|255764464|r 91 SLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKE 147 (149)
Q Consensus 91 ~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~ 147 (149)
+.+||+|||+|+.||+... ..-.++.++|..|+++++|.++++.||..
T Consensus 13 i~agi~~Vvi~~~Dpnp~v---------a~l~~aGI~v~~gi~~~~~~~~~~~f~~~ 60 (238)
T 2bl9_A 13 ICACCKVAPTSAGTKNEPF---------SPRTFRGLGNKGTLPWKCNSVDMKYFSSV 60 (238)
T ss_dssp EEEEEEECCCSSSSCCCTT---------CSCSSCEEEBTTBCSSSCCHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7767504665654313445---------67776567779908899987998999986
No 28
>>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, X-RAY, zinc, alternative splicing; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* (A:)
Probab=93.52 E-value=0.12 Score=30.38 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHH-CCCCCCCCEEEEECCCCCHHHHHHHHH-----CCCCEEEEEE
Q ss_conf 6425113445666641-488545411688616776889899986-----0888599971
Q gi|255764464|r 50 VTAHAEILAIRMGCRI-LSQEILPEVDLYVTLEPCTMCAAAISL-----ARIRRLYYGA 102 (149)
Q Consensus 50 ~t~HAEi~ai~~a~~~-~~~~~l~~~tlYtTlEPC~MC~~Ai~~-----agI~rVvyg~ 102 (149)
...|||+.-|...... +++..--.-|-|+|=.||+-|+..+.. -.++=.||.+
T Consensus 77 ~~~HaE~~Fl~~~~~~~l~~~~~y~ITwy~SWSPC~~CA~kia~FL~~~~~v~L~If~s 135 (207)
T 3ir2_A 77 EGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTA 135 (207)
T ss_dssp CCCCHHHHHHHHGGGGCCCTTSCEEEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 66359999998751415796753789877726884999999999997699907997763
No 29
>>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, double-stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii str} (A:)
Probab=43.40 E-value=25 Score=16.49 Aligned_cols=56 Identities=14% Similarity=-0.040 Sum_probs=34.6
Q ss_pred EEEEEEE-CCEEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 8999983-89099987347354488-64251134456666414885454116886167
Q gi|255764464|r 26 VGAVAVL-NNKIISRAGNRNRELKD-VTAHAEILAIRMGCRILSQEILPEVDLYVTLE 81 (149)
Q Consensus 26 vGaviv~-~g~ii~~g~N~~~~~~d-~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE 81 (149)
+|+|+-. ++.++-.+........+ ...+||+.|+..+.+...........+++.-+
T Consensus 21 ~G~vl~~~~~~~~~~s~~~~~~~~~~tn~~aEl~Ai~~al~~~~~~~~~~~~i~~ds~ 78 (149)
T 2ehg_A 21 FGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQ 78 (149)
T ss_dssp EEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCH
T ss_pred EEEEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCE
T ss_conf 9999998996799888751156777663799999999877610100122103760473
No 30
>>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* (A:)
Probab=34.40 E-value=14 Score=17.99 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCEEEEEEEC-CE-EEE--EEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 8089999838-90-999--8734735448864251134456666414885454116886167768898
Q gi|255764464|r 24 IPVGAVAVLN-NK-IIS--RAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCA 87 (149)
Q Consensus 24 ~PvGaviv~~-g~-ii~--~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~ 87 (149)
...|++++.. +. +.. .+.+. .. ...+||+.||..|.+..........++||--....-+.
T Consensus 23 ~g~g~~~~~~~~~~~~~~~~~~~~-~~---tn~~aEl~Ai~~aL~~a~~~~~~~v~i~tDS~~v~~~l 86 (154)
T 2qkb_A 23 RPRAGIGVYWGPGHPLNVGIRLPG-RQ---TNQRAEIHAACKAIEQAKTQNINKLVLYTNSXFTINGI 86 (154)
T ss_dssp SCEEEEEEECSTTCTTCEEEECCS-SC---CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHH
T ss_pred CCEEEEEEEECCCCEEEEECCCCC-CC---CHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEHHH
T ss_conf 970799999569877876104567-65---34689999999999876522765323432402232000
No 31
>>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structure initiative; 1.99A {Bacillus cereus} (A:74-205)
Probab=33.04 E-value=27 Score=16.27 Aligned_cols=16 Identities=56% Similarity=0.613 Sum_probs=12.3
Q ss_pred EEEEEECCEEEEEEEC
Q ss_conf 9999838909998734
Q gi|255764464|r 27 GAVAVLNNKIISRAGN 42 (149)
Q Consensus 27 Gaviv~~g~ii~~g~N 42 (149)
||+|+++|+|++.|.-
T Consensus 63 GAviI~~~~I~~Ag~~ 78 (132)
T 2fb5_A 63 GAVLVKNNHIVSAANI 78 (132)
T ss_dssp SEEEEETTEEEEEEEB
T ss_pred CEEEEECCEEEEEEEE
T ss_conf 4199968908998766
No 32
>>3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism, carbapenem, resistance, hydrolase; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* (A:)
Probab=31.66 E-value=33 Score=15.77 Aligned_cols=41 Identities=12% Similarity=-0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHH-HHCCCCCEEEEEEE--CCEEEEEEECCCCCCCCC
Q ss_conf 999999988-75799808999983--890999873473544886
Q gi|255764464|r 10 CALEEAQNA-ALRNEIPVGAVAVL--NNKIISRAGNRNRELKDV 50 (149)
Q Consensus 10 ~A~~~A~~a-~~~g~~PvGaviv~--~g~ii~~g~N~~~~~~d~ 50 (149)
..++.+.+. ....+...++|+++ +|+|++...|+..+...|
T Consensus 5 ~~~~~~l~~~~~~~~~~ga~vv~d~~tG~vlA~~~n~~~~~~~p 48 (244)
T 3g4p_A 5 QQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVP 48 (244)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETTEEEEEESCGGGGGCCBCC
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 88999999997313768479999489876304644355188799
No 33
>>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum usda 110} (A:1-74,A:397-475)
Probab=30.30 E-value=40 Score=15.22 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=15.8
Q ss_pred CCEEEEEEECCEEEEEEEC
Q ss_conf 8089999838909998734
Q gi|255764464|r 24 IPVGAVAVLNNKIISRAGN 42 (149)
Q Consensus 24 ~PvGaviv~~g~ii~~g~N 42 (149)
.|=|+|+|++|+|++.|.-
T Consensus 33 ~eDGaivvedG~I~avG~~ 51 (153)
T 2ood_A 33 HQDGLXVVTDGVIKAFGPY 51 (153)
T ss_dssp EEEEEEEEESSBEEEEEEH
T ss_pred ECCEEEEEECCEEEEEECC
T ss_conf 8681899989999998075
No 34
>>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens} (A:1-165,A:237-351)
Probab=29.45 E-value=42 Score=15.13 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=30.3
Q ss_pred CEEEEEEE-CC------CCCCCCC--CCCCHHHHHHHHHHH------------------------CCCCCCC---CEEEE
Q ss_conf 90999873-47------3544886--425113445666641------------------------4885454---11688
Q gi|255764464|r 34 NKIISRAG-NR------NRELKDV--TAHAEILAIRMGCRI------------------------LSQEILP---EVDLY 77 (149)
Q Consensus 34 g~ii~~g~-N~------~~~~~d~--t~HAEi~ai~~a~~~------------------------~~~~~l~---~~tlY 77 (149)
.+||+.|- ++ ....++. -.|||++|.+-..+. .+.+.|+ ..-||
T Consensus 68 ~~VVslgTGtKCi~~~~l~~~G~~l~D~HAEVlARR~f~r~Ly~ql~~~~~~~~~~~~sife~~~~~~~~Lk~~v~~hlY 147 (280)
T 1zy7_A 68 AKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQKSERGGFRLKENVQFHLY 147 (280)
T ss_dssp CEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCSEEECTTSSEEECTTEEEEEE
T ss_pred EEEEEEECCCCCCCHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCCEEEEEE
T ss_conf 28999835676168624485879666246999999999999999999986188876660788779997576798089999
Q ss_pred ECCCCCHHHHH
Q ss_conf 61677688989
Q gi|255764464|r 78 VTLEPCTMCAA 88 (149)
Q Consensus 78 tTlEPC~MC~~ 88 (149)
+|.-||-=++.
T Consensus 148 iS~~PCGDAsi 158 (280)
T 1zy7_A 148 ISTSPCGDARI 158 (280)
T ss_dssp ESSCCTTHHHH
T ss_pred ECCCCCCCHHH
T ss_conf 67788864110
No 35
>>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A 2k74_A* (A:)
Probab=27.16 E-value=17 Score=17.44 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=7.4
Q ss_pred CCCCCHHHHH
Q ss_conf 1677688989
Q gi|255764464|r 79 TLEPCTMCAA 88 (149)
Q Consensus 79 TlEPC~MC~~ 88 (149)
-++||++|.-
T Consensus 37 ~~~PC~LCi~ 46 (176)
T 2zuq_A 37 LLKPSVLCIY 46 (176)
T ss_dssp CCCCCTTHHH
T ss_pred CCCCCHHHHH
T ss_conf 8987475999
No 36
>>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} (A:399-453)
Probab=25.92 E-value=48 Score=14.75 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.5
Q ss_pred EEEEEC--CEEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999838--90999873473544886425113445666
Q gi|255764464|r 28 AVAVLN--NKIISRAGNRNRELKDVTAHAEILAIRMG 62 (149)
Q Consensus 28 aviv~~--g~ii~~g~N~~~~~~d~t~HAEi~ai~~a 62 (149)
||..+- |||+..|.-..++..+.|..|-+.-|...
T Consensus 5 aVMyDa~~GKIlt~GGsp~Y~~s~at~~AhiItI~~p 41 (55)
T 1k3i_A 5 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 41 (55)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCC
T ss_conf 6775045886999503467888766662379751358
No 37
>>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A* (A:)
Probab=23.55 E-value=43 Score=15.06 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=20.8
Q ss_pred CCEEEEECCCC----CHHHHHHHHH---CCCCEEEE
Q ss_conf 41168861677----6889899986---08885999
Q gi|255764464|r 72 PEVDLYVTLEP----CTMCAAAISL---ARIRRLYY 100 (149)
Q Consensus 72 ~~~tlYtTlEP----C~MC~~Ai~~---agI~rVvy 100 (149)
...+||++.-| |++|..|.-. .|+.-..+
T Consensus 20 ~~vvif~ks~~~~~~Cp~c~~a~~~L~~~g~~~~~~ 55 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAA 55 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 998999768899998879999999999739853699
No 38
>>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} (A:1-62,A:325-386)
Probab=23.53 E-value=40 Score=15.21 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=15.7
Q ss_pred CEEEEEEECCEEEEEEECC
Q ss_conf 0899998389099987347
Q gi|255764464|r 25 PVGAVAVLNNKIISRAGNR 43 (149)
Q Consensus 25 PvGaviv~~g~ii~~g~N~ 43 (149)
+-|+|++++|+|.+.|.+.
T Consensus 23 ~~g~I~I~dGkIaaVG~~~ 41 (124)
T 2vun_A 23 QADTIVVEDGLIAAIGGEE 41 (124)
T ss_dssp CCSEEEEETTEEEEEESGG
T ss_pred CCCEEEEECCEEEEECCCC
T ss_conf 5889999899999955877
No 39
>>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* (A:1-96,A:487-534)
Probab=23.30 E-value=54 Score=14.45 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=10.3
Q ss_pred EEEEEEECCEEEEEEE
Q ss_conf 8999983890999873
Q gi|255764464|r 26 VGAVAVLNNKIISRAG 41 (149)
Q Consensus 26 vGaviv~~g~ii~~g~ 41 (149)
+.|+.|.+|+|++.|-
T Consensus 55 aeAvaV~~grI~~vGs 70 (144)
T 3icj_A 55 VSGLVISNERVLYAGD 70 (144)
T ss_dssp ESEEEEETTEEEEEEC
T ss_pred EEEEEEECCEEEEECC
T ss_conf 7089999999999888
No 40
>>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio} (C:1-47)
Probab=21.38 E-value=9.4 Score=19.03 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=7.7
Q ss_pred EECCCCCHHHH
Q ss_conf 86167768898
Q gi|255764464|r 77 YVTLEPCTMCA 87 (149)
Q Consensus 77 YtTlEPC~MC~ 87 (149)
++|-.||+||.
T Consensus 21 ~ITdnpCi~Cv 31 (47)
T 3bk3_C 21 NITDNPCISCV 31 (47)
T ss_dssp TTTTSTTEEEE
T ss_pred CCCCCCCCCCE
T ss_conf 87789792688
Done!