Query gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str. psy62] Match_columns 149 No_of_seqs 109 out of 4406 Neff 6.6 Searched_HMMs 13730 Date Wed Jun 1 05:12:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764464.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wwra1 c.97.1.2 (A:1-151) tRN 100.0 0 0 319.5 15.6 146 3-149 2-147 (151) 2 d2b3ja1 c.97.1.2 (A:1-151) tRN 100.0 0 0 318.4 15.2 149 1-149 1-149 (151) 3 d1z3aa1 c.97.1.2 (A:13-168) tR 100.0 0 0 314.7 15.5 147 3-149 6-152 (156) 4 d2g84a1 c.97.1.2 (A:1-189) Put 100.0 2.8E-45 0 290.7 12.5 147 2-148 24-181 (189) 5 d2a8na1 c.97.1.2 (A:2-131) Cyt 100.0 1.5E-43 0 279.9 14.8 129 3-131 2-130 (130) 6 d1wkqa_ c.97.1.2 (A:) Guanine 100.0 6.4E-44 0 282.1 9.3 145 1-147 3-152 (158) 7 d1p6oa_ c.97.1.2 (A:) Cytosine 100.0 7.2E-43 0 275.7 12.9 139 2-149 7-147 (156) 8 d2hxva2 c.97.1.2 (A:1-147) Rib 100.0 1.1E-39 7.8E-44 256.7 14.0 133 4-147 2-142 (147) 9 d2b3za2 c.97.1.2 (A:1-145) Rib 100.0 8.6E-39 6.3E-43 251.2 12.7 133 4-149 2-142 (145) 10 d1vq2a_ c.97.1.2 (A:) Deoxycyt 100.0 3.7E-30 2.7E-34 199.3 8.3 137 3-149 2-191 (193) 11 d2d30a1 c.97.1.1 (A:1-124) mon 98.0 3.2E-05 2.3E-09 49.6 10.1 91 1-94 1-97 (124) 12 d1alna2 c.97.1.1 (A:151-294) T 97.9 1.7E-05 1.3E-09 51.1 6.5 87 3-92 37-132 (144) 13 d1r5ta_ c.97.1.1 (A:) mono-dom 97.9 0.00024 1.7E-08 44.3 12.2 90 6-96 8-108 (141) 14 d2fr5a1 c.97.1.1 (A:11-146) mo 97.8 0.00013 9.1E-09 46.0 9.6 93 8-102 5-108 (136) 15 d1uwza_ c.97.1.1 (A:) mono-dom 97.7 0.00013 9.8E-09 45.8 9.4 91 1-94 1-97 (130) 16 d1alna1 c.97.1.1 (A:1-150) Two 97.2 0.00079 5.8E-08 41.1 8.0 67 23-93 70-139 (150) 17 d2z3ga1 c.97.1.1 (A:2-124) Bla 96.9 0.0089 6.5E-07 34.8 10.6 86 4-94 6-98 (123) 18 d1zbfa1 c.55.3.1 (A:62-193) BH 59.3 1.1 7.9E-05 22.3 0.4 58 20-81 13-73 (132) 19 d2hi7b1 a.29.15.1 (B:14-162) D 45.7 2.5 0.00018 20.1 0.4 10 79-88 24-33 (149) 20 d1nuia2 g.41.3.2 (A:10-63) Zin 22.3 5.6 0.00041 18.0 -1.0 12 76-87 1-12 (54) No 1 >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=0 Score=319.47 Aligned_cols=146 Identities=39% Similarity=0.604 Sum_probs=141.7 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC Q ss_conf 56999999999999887579980899998389099987347354488642511344566664148854541168861677 Q gi|255764464|r 3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEP 82 (149) Q Consensus 3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEP 82 (149) +||+||++||++|++|+..|++|||||||++|+||+.|+|++.+..||++|||++||++|+++++..+|+++|||||+|| T Consensus 2 ~~e~fM~~Ai~~A~~a~~~~~~pVGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~tlY~TlEP 81 (151) T d1wwra1 2 GKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEP 81 (151) T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSCC T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC T ss_conf 88999999999999875269999999999799566630332224675011389999999987538565578676500268 Q ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 6889899986088859997117988501741344431689999879928218999999899988409 Q gi|255764464|r 83 CTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149) Q Consensus 83 C~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149) |+||++||+|+||+|||||+.||+.|+.++..+++..+.++|+++|.+|++ +||.+||++||++|| T Consensus 82 C~mC~~ai~~~~I~rVvyg~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-ee~~~Ll~~Ff~~~R 147 (151) T d1wwra1 82 CIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL-EEASELLSEFFKKLR 147 (151) T ss_dssp BHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEECCC-HHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECH-HHHHHHHHHHHHHHH T ss_conf 827888999855885899845699875343888876421589988996039-999999999999972 No 2 >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Probab=100.00 E-value=0 Score=318.43 Aligned_cols=149 Identities=37% Similarity=0.615 Sum_probs=146.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 98569999999999998875799808999983890999873473544886425113445666641488545411688616 Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL 80 (149) Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTl 80 (149) |++|++||++||++|++|...|++|||||||++|++|+.|+|++....|||.|||+++++++++.++..++++++||||+ T Consensus 1 m~~D~~fM~~Ai~~A~~a~~~g~~PVGaViV~~~~ii~~g~~~~~~~~~~~~HAe~~a~~~~~~~~~~~~~~~~~ly~t~ 80 (151) T d2b3ja1 1 MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTL 80 (151) T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC T ss_conf 96189999999999998453698989999973664101331000136761100256664799997288777787688743 Q ss_pred CCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 776889899986088859997117988501741344431689999879928218999999899988409 Q gi|255764464|r 81 EPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149) Q Consensus 81 EPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149) |||+||++||+|+||+|||||+.||+.++.++..+++..+.++|+++|++|||++||.+|+++||++|| T Consensus 81 ePC~mC~~aii~~gI~~Vv~g~~d~~~~~~g~~~~~l~~~~i~~~~~v~~Gvl~~e~~~L~~~Ff~~~r 149 (151) T d2b3ja1 81 EPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLR 149 (151) T ss_dssp CCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHH T ss_pred CCHHHHHCHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHH T ss_conf 643533120665135568997406998746765445664578999879769189999999999999985 No 3 >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=314.66 Aligned_cols=147 Identities=39% Similarity=0.566 Sum_probs=143.0 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC Q ss_conf 56999999999999887579980899998389099987347354488642511344566664148854541168861677 Q gi|255764464|r 3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEP 82 (149) Q Consensus 3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEP 82 (149) +|++||++||++|++|+..|++|||||||++|+||++|+|++....|||.|||++||+++..+.++.+|.+++||||+|| T Consensus 6 ~~e~~M~~Ai~~A~~a~~~~~~pvGaViv~~g~Iia~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~~lytT~eP 85 (156) T d1z3aa1 6 SHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEP 85 (156) T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEEECC T ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC T ss_conf 89999999999999854589898999999899089996011145575405677776777775313655457446402566 Q ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 6889899986088859997117988501741344431689999879928218999999899988409 Q gi|255764464|r 83 CTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149) Q Consensus 83 C~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149) |+||++||+|+||+|||||+.||+.|+.++..+.+..+..+++++|++||+++||.+|+++||++|| T Consensus 86 C~mC~~aii~~gI~rVvyg~~d~~~~~~g~~~~~l~~~~~~~~ieV~~gvl~ee~~~ll~~Ff~~~r 152 (156) T d1z3aa1 86 CVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRR 152 (156) T ss_dssp CHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHH T ss_conf 5432658987377657997523887655718899871788999689908589999999999999998 No 4 >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Probab=100.00 E-value=2.8e-45 Score=290.66 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=128.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE--CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-----CCE Q ss_conf 8569999999999998875799808999983--890999873473544886425113445666641488545-----411 Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEIL-----PEV 74 (149) Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~--~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l-----~~~ 74 (149) ..++.+|++||++|+++.+.|+.|||||||+ +|+||++|+|++.+.+|||+||||+||++|++++++.++ .+| T Consensus 24 ~~~e~~M~~ai~lAr~a~~~g~~P~GaviV~~~~g~Iia~g~N~~~~~~dpt~HAEi~AI~~A~~~~~~~~l~~~~l~~~ 103 (189) T d2g84a1 24 AAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPAC 103 (189) T ss_dssp CSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCCE T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 88599999999999999876999889999978999899987087676899863499999999999863011122123685 Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHH----HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHH Q ss_conf 6886167768898999860888599971179885017413----4443168999987992821899999989998840 Q gi|255764464|r 75 DLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGT----QFYTLATCHHSPEIYPGISEQRSRQIIQDFFKER 148 (149) Q Consensus 75 tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~----~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~k 148 (149) |||||+|||+||++||+|+||+|||||+.|++.++.+... ........+++++|++|++++||.+|+++||++. T Consensus 104 tlY~TlEPC~MC~~Ai~~a~I~rVvyga~~~d~~~~g~~~~~~~~~~~~~~~~~~ieV~~gvl~dE~~~Llk~f~~~~ 181 (189) T d2g84a1 104 ELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 181 (189) T ss_dssp EEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHHC T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCC T ss_conf 788205777178778888517989998618985446765430067776788759998987876999999999999808 No 5 >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Probab=100.00 E-value=1.5e-43 Score=279.92 Aligned_cols=129 Identities=63% Similarity=1.101 Sum_probs=126.4 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC Q ss_conf 56999999999999887579980899998389099987347354488642511344566664148854541168861677 Q gi|255764464|r 3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEP 82 (149) Q Consensus 3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEP 82 (149) +|++||++||++|++|...|++|||||||++|+||+.|+|++.+..||+.|||++||++|.++++.++|+++|||||+|| T Consensus 2 ~~~~fM~~Al~~A~~a~~~~~~PVGavIV~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly~T~EP 81 (130) T d2a8na1 2 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLEP 81 (130) T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEECC T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCC T ss_conf 57999999999999862359997999999899199862331012466521059899999999838767889788225666 Q ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEEC Q ss_conf 6889899986088859997117988501741344431689999879928 Q gi|255764464|r 83 CTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPG 131 (149) Q Consensus 83 C~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~g 131 (149) |+||++||+|+||+|||||+.||+.|+.++..+++..+.+||+++|++| T Consensus 82 C~mC~~ai~~~gI~rVvyg~~d~~~g~~gs~~~l~~~~~lnh~~eV~~G 130 (130) T d2a8na1 82 CTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSG 130 (130) T ss_dssp BHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEC T ss_conf 8789999998556979999738999875642034107788998488719 No 6 >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Probab=100.00 E-value=6.4e-44 Score=282.06 Aligned_cols=145 Identities=27% Similarity=0.373 Sum_probs=125.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 9856999999999999887579-980899998389099987347354488642511344566664148854541168861 Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALRN-EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT 79 (149) Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~g-~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT 79 (149) |+ |+.||++|+++|+++...| ++|||||||++|+||+.|+|++...+|||+|||++||++|+++++..+|+||||||| T Consensus 3 m~-~~~~M~~Ai~~A~~~~~~g~~~PvGaviv~~~~ii~~g~n~~~~~~~~t~HAE~~ai~~a~~~~~~~~l~~~tlyvT 81 (158) T d1wkqa_ 3 MN-HETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 81 (158) T ss_dssp CC-HHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE T ss_pred CC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEE T ss_conf 88-89999999999998644689998899999566101430330204677762178999999987427641479789997 Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHH----HCCCCCCCCEEEECCCHHHHHHHHHHHHHH Q ss_conf 67768898999860888599971179885017413444----316899998799282189999998999884 Q gi|255764464|r 80 LEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFY----TLATCHHSPEIYPGISEQRSRQIIQDFFKE 147 (149) Q Consensus 80 lEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~----~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~ 147 (149) +|||+||++||+|+||+|||||+.|++.+..++..... ..+..++...+ .+++.+|+.++++.|++. T Consensus 82 lEPC~mC~~ai~~agi~~Vvy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v-~~~~~~e~~~~f~~~~~~ 152 (158) T d1wkqa_ 82 CEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNF 152 (158) T ss_dssp ECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHC T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCE-EHHHHHHHHHHHHHHHHH T ss_conf 47776579999963579899987589853367606776888836866266127-317789997999999886 No 7 >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=100.00 E-value=7.2e-43 Score=275.73 Aligned_cols=139 Identities=25% Similarity=0.408 Sum_probs=119.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEE--ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 856999999999999887579980899998--389099987347354488642511344566664148854541168861 Q gi|255764464|r 2 KKGNVFMSCALEEAQNAALRNEIPVGAVAV--LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT 79 (149) Q Consensus 2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv--~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT 79 (149) +.|++||++|+++|+++...|++||||||| ++|+||+.|+|++.+.+|||+|||++||+++ .+++..+|+++||||| T Consensus 7 ~~D~~~M~~A~~~A~~a~~~g~~PvGaviV~~~~g~Iia~g~N~~~~~~~~~~HAE~~Ai~~a-~~~~~~~l~~~tlyvT 85 (156) T d1p6oa_ 7 KWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENC-GRLEGKVYKDTTLYTT 85 (156) T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHH-CSCCHHHHTTEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCEEEEEE T ss_conf 999999999999999887769998899999917998999970566545665433288999887-3036543223378850 Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 6776889899986088859997117988501741344431689999879928218999999899988409 Q gi|255764464|r 80 LEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149) Q Consensus 80 lEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149) +|||+||++||+|+||+|||||+.++..+ .+...+.... .+| .+|+++||.+||++||++|| T Consensus 86 lEPC~mC~~ai~~~gI~rVv~G~~~~~~~---~g~~~L~~~~----~~v-~~v~~~ec~~Ll~~Ff~~rr 147 (156) T d1p6oa_ 86 LSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEKYLQTRG----HEV-VVVDDERCKKIMKQFIDERP 147 (156) T ss_dssp ECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHHHHHHTT----CEE-EECCCHHHHHHHHHHHHHCH T ss_pred CCCCHHHHHHHHHHCCCEEEECCCCCCCC---CHHHHHHCCC----EEE-EEECHHHHHHHHHHHHHHCC T ss_conf 56877899999980999899917999886---5589861488----278-54579999999999999721 No 8 >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=1.1e-39 Score=256.69 Aligned_cols=133 Identities=29% Similarity=0.397 Sum_probs=116.0 Q ss_pred HHHHHHHHHHHHHHHHH--CCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 69999999999998875--7998089999838909998734735448864251134456666414885454116886167 Q gi|255764464|r 4 GNVFMSCALEEAQNAAL--RNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLE 81 (149) Q Consensus 4 d~~~M~~A~~~A~~a~~--~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE 81 (149) |+.||++|+++|+++.. .|++|||||||++|+||+.|+|+. +++.|||++||.+|.+. .+++.|+|||||+| T Consensus 2 he~~M~~Al~~A~~~~~~~~~~~pVGaViV~~g~IIa~g~n~~----~~~~hae~~ai~~a~~~--~~~l~~~~lYvTlE 75 (147) T d2hxva2 2 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIESARKK--GEDLRGATLIVTLE 75 (147) T ss_dssp HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHHHHHHT--TCCCTTCEEEEEEC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECEEC----CCCCHHHHHHHHHHHHH--CCCCCCCEEEECCC T ss_conf 6999999999998605667999948999998994777611003----68834899989999981--78877988852045 Q ss_pred CC------HHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHH Q ss_conf 76------8898999860888599971179885017413444316899998799282189999998999884 Q gi|255764464|r 82 PC------TMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKE 147 (149) Q Consensus 82 PC------~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~ 147 (149) || +||++||+|+||+|||||+.||+.+ .++..+.+. ++.++|++|||++||.+|++.||+. T Consensus 76 PC~~~~~~p~C~~ai~~agi~rVv~g~~dp~~~-~~~~~~~l~----~~~i~V~~gvl~~e~~~l~~~F~~~ 142 (147) T d2hxva2 76 PCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPV-SGNGVEKFR----NHGIEVIEGVLEEEVKKLCEFFITY 142 (147) T ss_dssp CCCSCSSSCCHHHHHHHHTCCEEEEEECCCCGG-GCCHHHHHH----TTTCEEEECTTHHHHHHHTHHHHHH T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHH----CCCCEEEECCCHHHHHHHHHHHHHH T ss_conf 555569972355777753865245642446541-002335655----5997899385799999999999999 No 9 >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Probab=100.00 E-value=8.6e-39 Score=251.24 Aligned_cols=133 Identities=29% Similarity=0.409 Sum_probs=120.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCC--CEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 699999999999988757998--089999838909998734735448864251134456666414885454116886167 Q gi|255764464|r 4 GNVFMSCALEEAQNAALRNEI--PVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLE 81 (149) Q Consensus 4 d~~~M~~A~~~A~~a~~~g~~--PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE 81 (149) |++||++|+++|+++...+++ |||||||++|+||+.|+|+. +++.|||..|+..|..+ +.+++||+|+| T Consensus 2 De~fM~~Al~~A~~a~~~~~~~p~VGaViV~~g~ii~~g~n~~----~~~~hae~~a~~~a~~~-----~~~~~lyvtle 72 (145) T d2b3za2 2 EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLK----YGEAHAEVHAIHMAGAH-----AEGADIYVTLE 72 (145) T ss_dssp HHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCS----TTSCCHHHHHHHHHGGG-----GTTCEEEESSC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEECCCCCCC----CCCCCHHHHHHHHHHHH-----HHCCCCCCCCC T ss_conf 4999999999998614677999988999995572101222233----57773265789998988-----63345333456 Q ss_pred CC------HHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 76------889899986088859997117988501741344431689999879928218999999899988409 Q gi|255764464|r 82 PC------TMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149) Q Consensus 82 PC------~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149) || +||++||+|+||+|||||+.||+.|..++..+++.. +.++|++|++++||.+||++||+++| T Consensus 73 pc~~~~~~~mC~~aIi~agI~rVvyg~~d~~~~~~g~~~~~l~~----~gieV~~gvl~~e~~~ll~~Ff~~~r 142 (145) T d2b3za2 73 PCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKE----AGIEVREGILADQAERLNEKFLHFMR 142 (145) T ss_dssp CCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHT----TTCEEEECTTHHHHHHHTHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHC----CCCEEECCCCHHHHHHHHHHHHHHHH T ss_conf 43456896208899998289957751334676555738899980----99989808479999999999999986 No 10 >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Probab=99.96 E-value=3.7e-30 Score=199.34 Aligned_cols=137 Identities=25% Similarity=0.302 Sum_probs=110.7 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCC---------------------------------- Q ss_conf 5699999999999988757998089999838909998734735448---------------------------------- Q gi|255764464|r 3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELK---------------------------------- 48 (149) Q Consensus 3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~---------------------------------- 48 (149) +++.||++|+.+|+++.. ...|||||||++|+||+.|||..-... T Consensus 2 ~~~~~M~~A~~~A~rS~c-~~~~VGAVIV~~~~IIs~G~Ng~p~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193) T d1vq2a_ 2 KASTVLQIAYLVSQESKC-CSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS 80 (193) T ss_dssp CHHHHHHHHHHHHTTCCC-SSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC------------------ T ss_pred CHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCCCCCCCCC T ss_conf 889999999999976899-8998689999899899986068867887654202443211033100111012221122322 Q ss_pred -------------------CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCE Q ss_conf -------------------8642511344566664148854541168861677688989998608885999711798850 Q gi|255764464|r 49 -------------------DVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGG 109 (149) Q Consensus 49 -------------------d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~ 109 (149) +.+.|||++||.+|.+. ...+.++|||||+|||+||+.+|+++||++|||+..+++.. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~HAE~nai~~a~~~--~~~~~~~~ly~t~~PC~~Ca~~i~~~gI~~V~~~~~~~~~~- 157 (193) T d1vq2a_ 81 TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAEN--GSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK- 157 (193) T ss_dssp --CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHH--TCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC- T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCC- T ss_conf 110000001344321125789868999999987760--77877754772589967899999851578899972799854- Q ss_pred ECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 1741344431689999879928218999999899988409 Q gi|255764464|r 110 IENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 (149) Q Consensus 110 ~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR 149 (149) ....+++...+ ++|+ .++++|+.+|+++||.+-| T Consensus 158 -~~~~~~l~~~g----I~v~-~i~~~~~~~l~~~~~~~~~ 191 (193) T d1vq2a_ 158 -PGWDDILRNAG----IEVF-NVPKKNLNKLNWENINEFC 191 (193) T ss_dssp -TTTTHHHHHTT----CEEE-ECCGGGCCSSCGGGCCCBC T ss_pred -HHHHHHHHHCC----CEEE-ECCHHHHHHHHHHHHHHHH T ss_conf -78999999879----9899-5399999999899999985 No 11 >d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Probab=98.02 E-value=3.2e-05 Score=49.57 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=64.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 985699999999999988757-9980899998-38909998734735448864251134456666414885454116886 Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALR-NEIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV 78 (149) Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~-g~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt 78 (149) |++.+ .++.|++..++|+.. .+.||||++. ++|+| -.|.|..+.....+.|||..||-++... +........++. T Consensus 1 m~~~~-L~~~A~~a~~~ayaPyS~f~VGAal~~~~G~i-~~G~NvEn~s~~~~~CAEr~Ai~~a~~~-g~~~~~~i~v~~ 77 (124) T d2d30a1 1 MNSKQ-LIQEAIEARKQAYVPYSKFQVGAALLTQDGKV-YRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVA 77 (124) T ss_dssp CCHHH-HHHHHHHHHTTCBCTTTCCCEEEEEEETTCCE-EEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEE T ss_pred CCHHH-HHHHHHHHHHCCCCCCCCCCEEEEEEECCCCE-EEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCEEEEEEEEC T ss_conf 98899-99999999971838866996899999689999-9998632555776548899998988765-873057999982 Q ss_pred CC----CCCHHHHHHHHHCC Q ss_conf 16----77688989998608 Q gi|255764464|r 79 TL----EPCTMCAAAISLAR 94 (149) Q Consensus 79 Tl----EPC~MC~~Ai~~ag 94 (149) .. -||-+|-..|.... T Consensus 78 ~~~~~~~PCG~CRQ~l~E~~ 97 (124) T d2d30a1 78 DTKRPVPPCGACRQVMVELC 97 (124) T ss_dssp SCSSCCCCCHHHHHHHHHHS T ss_pred CCCCCCCCCHHHHHHHHHHC T ss_conf 78775587357899999856 No 12 >d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Probab=97.86 E-value=1.7e-05 Score=51.13 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=59.5 Q ss_pred CHHHHHHHHHHHHHHHHHCC-CCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf 56999999999999887579-980899998-3890999873473544886425113445666641488545411688616 Q gi|255764464|r 3 KGNVFMSCALEEAQNAALRN-EIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL 80 (149) Q Consensus 3 ~d~~~M~~A~~~A~~a~~~g-~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTl 80 (149) +|+..++.|++.+++|+..- +.||||++. ++|+|. .|.|..+...+++.|||..||.++-.. + .++.+....+.. T Consensus 37 ~~d~L~~~A~~aa~~ayaPYS~~~vGaal~~~~G~i~-~G~nvEnaa~~~slcAE~~Ai~~av~~-G-~~~~~I~~~v~v 113 (144) T d1alna2 37 TGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLK-G-YDYPDIQRAVLA 113 (144) T ss_dssp CSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHT-T-CCGGGEEEEEEE T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEE-EEEEEECCCCCCCCCHHHHHHHHHHHC-C-CCCCCEEEEEEE T ss_conf 8799999999999846298789851589996799999-976311355678855899999999984-9-995687999998 Q ss_pred C----C---CHHHHHHHHH Q ss_conf 7----7---6889899986 Q gi|255764464|r 81 E----P---CTMCAAAISL 92 (149) Q Consensus 81 E----P---C~MC~~Ai~~ 92 (149) | | |.+|-..+.. T Consensus 114 e~~~~~is~~~~~r~~l~~ 132 (144) T d1alna2 114 EKADAPLIQWDATSATLKA 132 (144) T ss_dssp ECTTCSSCCHHHHHHHHHH T ss_pred ECCCCCCCCHHHHHHHHHH T ss_conf 2799987838999999998 No 13 >d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=97.85 E-value=0.00024 Score=44.31 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=60.9 Q ss_pred HHHHHHHHHHHHHHHCC-----CCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE- Q ss_conf 99999999999887579-----980899998-38909998734735448864251134456666414885454116886- Q gi|255764464|r 6 VFMSCALEEAQNAALRN-----EIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV- 78 (149) Q Consensus 6 ~~M~~A~~~A~~a~~~g-----~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt- 78 (149) .-++..++.|.++.+.. +.||||++. ++|+|.. |.|..+.....+.|||..||-++...-......-..+.. T Consensus 8 ~~~~~L~~~a~~a~~~ayaPYS~f~VGAAl~t~~G~I~~-G~NvEnas~~~~lCAEr~Ai~~a~~~g~~~~~~~~vv~~~ 86 (141) T d1r5ta_ 8 RQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFT-GANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGD 86 (141) T ss_dssp HHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEEE-EECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEES T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEE-EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 999999999999998182886699478999968998988-8861245555566777889999887068764068998506 Q ss_pred ----CCCCCHHHHHHHHHCCCC Q ss_conf ----167768898999860888 Q gi|255764464|r 79 ----TLEPCTMCAAAISLARIR 96 (149) Q Consensus 79 ----TlEPC~MC~~Ai~~agI~ 96 (149) ..-||-+|-..|....-+ T Consensus 87 ~~~~~~sPCG~CRQ~l~E~~~~ 108 (141) T d1r5ta_ 87 SEDQCVSPCGVCRQFINEFVVK 108 (141) T ss_dssp CSSSCCCCCHHHHHHHHTTSCT T ss_pred CCCCCCCCHHHHHHHHHHHCCC T ss_conf 7777788228799999996689 No 14 >d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Probab=97.76 E-value=0.00013 Score=45.97 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHHHC-----CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-- Q ss_conf 99999999988757-----99808999983-89099987347354488642511344566664148854541168861-- Q gi|255764464|r 8 MSCALEEAQNAALR-----NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT-- 79 (149) Q Consensus 8 M~~A~~~A~~a~~~-----g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT-- 79 (149) ++..+++|+++.+. -+.||||++.. +|+|. .|.|.-+.....+-|||..||-++...-. ..+......+. T Consensus 5 ~~~l~~~A~~a~~~AyaPYS~f~VGAa~~~~dG~i~-~G~NvEnasy~~~iCAEr~Ai~~a~~~g~-~~~~~~~~~~~~~ 82 (136) T d2fr5a1 5 VQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGY-KDFRAIAISSDLQ 82 (136) T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEEEEEEEESCS T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHEEEEEEECCCC-CCEEEEEEECCCC T ss_conf 999999999999628488669967899995899899-98740356665663522100023101288-5179998311467 Q ss_pred ---CCCCHHHHHHHHHCCCCEEEEEE Q ss_conf ---67768898999860888599971 Q gi|255764464|r 80 ---LEPCTMCAAAISLARIRRLYYGA 102 (149) Q Consensus 80 ---lEPC~MC~~Ai~~agI~rVvyg~ 102 (149) +-||-+|-..|...+-...|+-. T Consensus 83 ~~~~~PCG~CRQ~l~E~~~~~~i~~~ 108 (136) T d2fr5a1 83 EEFISPCGACRQVMREFGTDWAVYMT 108 (136) T ss_dssp SSCCCCCHHHHHHHHHTCSSCEEEEE T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 88878656665899860998569998 No 15 >d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Probab=97.73 E-value=0.00013 Score=45.78 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=62.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 985699999999999988757-99808999983-8909998734735448864251134456666414885454116886 Q gi|255764464|r 1 MKKGNVFMSCALEEAQNAALR-NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV 78 (149) Q Consensus 1 M~~d~~~M~~A~~~A~~a~~~-g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt 78 (149) |++.+. ++.|++..++|+.. -+.+|||++.. +|+|. .|.|..+.....+.+||..||-.+... +...+.-..+++ T Consensus 1 m~~~~L-~~~A~~a~~~ayaPyS~f~VGAa~~~~~G~i~-~G~NvEnas~~~~~CAEr~Ai~~a~~~-g~~~~~~i~v~~ 77 (130) T d1uwza_ 1 MNRQEL-ITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAA 77 (130) T ss_dssp CCHHHH-HHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEE T ss_pred CCHHHH-HHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCCEEHHHHHHHHH-HHCCEEEEEEEC T ss_conf 988999-99999999718287569948899996899999-876003456665532000356788886-420122689972 Q ss_pred C----CCCCHHHHHHHHHCC Q ss_conf 1----677688989998608 Q gi|255764464|r 79 T----LEPCTMCAAAISLAR 94 (149) Q Consensus 79 T----lEPC~MC~~Ai~~ag 94 (149) . .-||-+|-..|.... T Consensus 78 ~~~~~~sPCG~CRQ~l~E~~ 97 (130) T d1uwza_ 78 DTPGPVSPCGACRQVISELC 97 (130) T ss_dssp SCSSSCCCCHHHHHHHHHHS T ss_pred CCCCCCCCCHHHHHHHHHHC T ss_conf 89986676789999999847 No 16 >d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Probab=97.23 E-value=0.00079 Score=41.14 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=47.8 Q ss_pred CCCEEEEEE-ECCEEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC Q ss_conf 980899998-3890999873473--5448864251134456666414885454116886167768898999860 Q gi|255764464|r 23 EIPVGAVAV-LNNKIISRAGNRN--RELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLA 93 (149) Q Consensus 23 ~~PvGaviv-~~g~ii~~g~N~~--~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~a 93 (149) +.+|||++. .+|+| -.|.|.. +.....+-|||..||-.+... +...+ -+++++.-||-+|-..|... T Consensus 70 ~F~VGAa~~~~~G~i-y~G~NvE~~nas~~~sicAEr~Ai~~a~~~-G~~~i--~~i~v~~sPCG~CRQ~m~E~ 139 (150) T d1alna1 70 NFNVGAIARGVSGTW-YFGANMEFIGATMQQTVHAEQSAISHAWLS-GEKAL--AAITVNYTPCGHCRQFMNEL 139 (150) T ss_dssp CCCCEEEEEETTSCE-EEEECBCCTTSCGGGCBCHHHHHHHHHHHT-TCCCE--EEEEESSCCCHHHHHHHTTB T ss_pred CCCEEEEEEECCCCE-EEEEEECCCCCCCCCCCCHHHHHHHHHHHC-CCCCE--EEEEEECCCCHHHHHHHHHH T ss_conf 985689999289999-998851146775677778999999999864-89834--69999758976688999996 No 17 >d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Probab=96.86 E-value=0.0089 Score=34.85 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=53.3 Q ss_pred HHHHHHHHHHHHHHHHHC-CCCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-- Q ss_conf 699999999999988757-9980899998-389099987347354488642511344566664148854541168861-- Q gi|255764464|r 4 GNVFMSCALEEAQNAALR-NEIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT-- 79 (149) Q Consensus 4 d~~~M~~A~~~A~~a~~~-g~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT-- 79 (149) +...++.|.+. ..++.- .+.+|||++. ++|+|. .|-|..+- ..+.+||..||-++...- ...+....++.. T Consensus 6 ~~~Li~~A~~~-~~~~~~~s~f~VGAa~l~~~G~i~-~G~NvEN~--s~glCAEr~Ai~~a~~~g-~~~i~~i~~v~~~~ 80 (123) T d2z3ga1 6 ESTLIERATAT-INSIPISEDYSVASAALSSDGRIF-TGVNVYHF--TGGPCAELVVLGTAAAAA-AGNLTCIVAIGNEN 80 (123) T ss_dssp HHHHHHHHHHH-HHHSCCCSSSCEEEEEEETTSCEE-EEECCCCT--TTCCCHHHHHHHHHHHTT-CCCEEEEEEEETTT T ss_pred HHHHHHHHHHH-HHCCCCCCCCCEEEEEEECCCCEE-EEECCCCC--CCCCCHHHHHHHHHHHCC-CCCEEEEEEEECCC T ss_conf 99999999999-744798789877999995899999-98711478--886335515765566508-97448999997689 Q ss_pred ---CCCCHHHHHHHHHCC Q ss_conf ---677688989998608 Q gi|255764464|r 80 ---LEPCTMCAAAISLAR 94 (149) Q Consensus 80 ---lEPC~MC~~Ai~~ag 94 (149) +-||-+|-..|.... T Consensus 81 ~~~~sPCG~CRQ~l~Ef~ 98 (123) T d2z3ga1 81 RGILSPCGRCRQVLLDLH 98 (123) T ss_dssp TEEECCCHHHHHHHHHHC T ss_pred CCCCCCCHHHHHHHHHHC T ss_conf 876783088999999968 No 18 >d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} Probab=59.32 E-value=1.1 Score=22.32 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=32.7 Q ss_pred HCCCC-C--EEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 57998-0--89999838909998734735448864251134456666414885454116886167 Q gi|255764464|r 20 LRNEI-P--VGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLE 81 (149) Q Consensus 20 ~~g~~-P--vGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE 81 (149) ..|++ | .|+|+..+++.+..+..-...+.| .||+.|+..|.+.+.... ...++||--+ T Consensus 13 ~~GNPGp~g~g~v~~~~~~~~~~sg~~~~~TNN---~aEl~A~i~aL~~~~~~~-~~i~I~tDS~ 73 (132) T d1zbfa1 13 SQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNN---MGEFLAIVHGLRYLKERN-SRKPIYSNSQ 73 (132) T ss_dssp ECSSSEEEEEEEEETTTCCEEEECCCEEEECHH---HHHHHHHHHHHHHHHHTT-CCCCEEESCH T ss_pred CCCCCCHHEEEEEEECCCEEEEEECCCCCCCHH---HHHHHHHHHHHHHHHCCC-CEEEEEECCH T ss_conf 799995126999997599799997686755459---999999999999863379-6599996539 No 19 >d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]} Probab=45.68 E-value=2.5 Score=20.12 Aligned_cols=10 Identities=40% Similarity=1.142 Sum_probs=7.4 Q ss_pred CCCCCHHHHH Q ss_conf 1677688989 Q gi|255764464|r 79 TLEPCTMCAA 88 (149) Q Consensus 79 TlEPC~MC~~ 88 (149) -++||+||.- T Consensus 24 gl~PC~LCi~ 33 (149) T d2hi7b1 24 LLKPCVLCIY 33 (149) T ss_dssp CCCCCSHHHH T ss_pred CCCCCHHHHH T ss_conf 8887477999 No 20 >d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase {Bacteriophage T7 [TaxId: 10760]} Probab=22.33 E-value=5.6 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=9.6 Q ss_pred EEECCCCCHHHH Q ss_conf 886167768898 Q gi|255764464|r 76 LYVTLEPCTMCA 87 (149) Q Consensus 76 lYtTlEPC~MC~ 87 (149) +|+-++||+.|- T Consensus 1 vFv~H~pCp~Cg 12 (54) T d1nuia2 1 VFLYHIPCDNCG 12 (54) T ss_dssp CEEEEECCSSSC T ss_pred CCCCCCCCCCCC T ss_conf 902156788888 Done!