RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate
deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str.
psy62]
         (149 letters)



>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, hydrolase; 1.80A {Aquifex aeolicus} (A:)
          Length = 171

 Score =  113 bits (282), Expect = 1e-26
 Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 1/143 (0%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           F+  AL EA+ A  + E+PVGA+ V   +IIS+A N   ELKD TAHAE+LAI+  CR L
Sbjct: 26  FLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL 85

Query: 67  SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
           + + L   +LYVTLEPC MC+ A+ L+RI ++ + A + K GG+ +        T +H  
Sbjct: 86  NTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRV 145

Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
           +      E+ + +++ +FFK+ R
Sbjct: 146 KWEYYPLEE-ASELLSEFFKKLR 167


>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase,
           dimer, zinc, metalloenzyme, structural genomics, PSI,
           protein structure initiative; 2.03A {Escherichia coli}
           (A:)
          Length = 168

 Score =  111 bits (278), Expect = 4e-26
 Identities = 57/143 (39%), Positives = 77/143 (53%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           +M  AL  A+ A    E+PVGAV V NN++I    NR     D TAHAEI+A+R G  ++
Sbjct: 12  WMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71

Query: 67  SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
               L +  LYVTLEPC MCA A+  +RI R+ +GA + K G   +          +H  
Sbjct: 72  QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRV 131

Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
           EI  GI       ++ DFF+ RR
Sbjct: 132 EITEGILADECAALLSDFFRMRR 154


>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA
           complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P;
           2.00A {Staphylococcus aureus subsp} (A:)
          Length = 159

 Score =  109 bits (273), Expect = 2e-25
 Identities = 54/143 (37%), Positives = 82/143 (57%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           FM+ A+EEA+ AA   E+P+GA+   ++++I+RA N    L+  TAHAE +AI    ++L
Sbjct: 10  FMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVL 69

Query: 67  SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
               L    LYVTLEPC MCA  I ++RI R+ YGA +PKGG   +       +  +H  
Sbjct: 70  GSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRA 129

Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
            +  G+ ++    ++  FFK  R
Sbjct: 130 IVDKGVLKEACSTLLTTFFKNLR 152


>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein,
           translation, tRNA processing, hydrolase, structural
           genomics; 2.80A {Homo sapiens} (A:)
          Length = 189

 Score =  106 bits (264), Expect = 2e-24
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 8/151 (5%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           +M  A+  A+ A    E+PVG + V NN+++ +  N   + K+ T HAE++AI       
Sbjct: 29  WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88

Query: 67  SQ------EILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
            Q      E+     LYVT+EPC MCAAA+ L +I  + YG  N + GG  +     +  
Sbjct: 89  RQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 148

Query: 121 --TCHHSPEIYPGISEQRSRQIIQDFFKERR 149
                   +  PG   + + ++++ F+K+  
Sbjct: 149 LPNTGRPFQCIPGYRAEEAVEMLKTFYKQEN 179


>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA
           binding protein; 1.60A {Agrobacterium tumefaciens} (A:)
          Length = 144

 Score =  103 bits (257), Expect = 1e-23
 Identities = 86/144 (59%), Positives = 111/144 (77%)

Query: 1   MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60
           M +   FM  AL EA++A  R+E+P+GAV VL+ ++I+R+GNR REL DVTAHAEI  IR
Sbjct: 1   MAERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIR 60

Query: 61  MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
           M C  L QE LP  DLYVTLEPCTMCAAAIS ARIRRLYYGA +PKGG +E+G +F++  
Sbjct: 61  MACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQP 120

Query: 121 TCHHSPEIYPGISEQRSRQIIQDF 144
           TCHH+P++Y G++E  S +I++ F
Sbjct: 121 TCHHAPDVYSGLAESESAEILRQF 144


>2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region;
           structural genomics, PSI, protein structure initiative;
           1.40A {Nitrosomonas europaea atcc 19718} (A:)
          Length = 197

 Score =  100 bits (250), Expect = 8e-23
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAV--LNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
            M   LE  +     +  P  A      +  +I+   NR    +   AHAEILA+ +   
Sbjct: 31  RMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQA 90

Query: 65  IL-----SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPK----GGGIENGTQ 115
            L     S + LP  +L  + EPC MC  A+  + +R L   A +      G       +
Sbjct: 91  KLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPE 150

Query: 116 FYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149
            +          +  G+    +  +++++     
Sbjct: 151 NWMGGLEARGITVTTGLLRDAACALLREYNACNG 184


>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
           {Streptococcus pyogenes serotype M6} (A:)
          Length = 179

 Score = 99.2 bits (246), Expect = 2e-22
 Identities = 53/143 (37%), Positives = 78/143 (54%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           FM  AL+E++ +  + EIP+G V V + +II R  N   E      HAE++AI       
Sbjct: 19  FMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 78

Query: 67  SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
               L +  L+VT+EPC MC+ AI LARI  + YGASN K GG+++  Q  T    +H  
Sbjct: 79  GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRV 138

Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
           ++  G+       I+Q FF++ R
Sbjct: 139 QVERGLLAADCANIMQTFFRQGR 161


>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine
           metabolism, nucleotide biosynthesis, zinc, hexamer,
           hydrolase, metal-binding, phosphoprotein; 2.10A {Homo
           sapiens} (A:)
          Length = 178

 Score = 97.3 bits (241), Expect = 9e-22
 Identities = 24/158 (15%), Positives = 41/158 (25%), Gaps = 20/158 (12%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHA------------ 54
           FM+ A   AQ +   N      +    NKI+    N                        
Sbjct: 16  FMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTK 75

Query: 55  ---EILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIE 111
                 A        +   +    +YV L PC  CA  I  A I+ + + +         
Sbjct: 76  YPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEA 135

Query: 112 NGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149
              +        +   +       +  +I+ DF     
Sbjct: 136 TAARLL-----FNMAGVTFRKFIPKCSKIVIDFDSINS 168


>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A
           {Saccharomyces cerevisiae} (A:)
          Length = 161

 Score = 94.1 bits (233), Expect = 8e-21
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
            M  A EEA        +P+G   +   +  ++ R  N   +    T H EI  +   C 
Sbjct: 17  GMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLEN-CG 75

Query: 65  ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
            L  ++  +  LY TL PC MC  AI +  I R   G +       E             
Sbjct: 76  RLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKGE--------KYLQT 127

Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149
                  + ++R ++I++ F  ER 
Sbjct: 128 RGHEVVVVDDERCKKIMKQFIDERP 152


>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino)uracil...; TM1828,
           structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga
           maritima} (A:1-154)
          Length = 154

 Score = 91.7 bits (227), Expect = 3e-20
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 7   FMSCALEEAQNAALRN--EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
           F   A+E A+    R     PVGAV V + +II+   +           A   A + G  
Sbjct: 17  FXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGED 76

Query: 65  ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
           +    ++  ++          C   I  + I+ +  G  +P         +F      +H
Sbjct: 77  LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKF-----RNH 131

Query: 125 SPEIYPGISEQRSRQIIQDFFK 146
             E+  G+ E+  +++ + F  
Sbjct: 132 GIEVIEGVLEEEVKKLCEFFIT 153


>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET:
           DDN; 2.20A {Enterobacteria phage T4} (A:1-45,A:102-193)
          Length = 137

 Score = 88.7 bits (220), Expect = 3e-19
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 3   KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMG 62
           K +  +  A   +Q +   +   VGAV   N +IIS   N +        HAE+ AI   
Sbjct: 2   KASTVLQIAYLVSQESKCCSW-KVGAVIEKNGRIISTGYNGSPA---GEIHAELNAILFA 57

Query: 63  CRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATC 122
               S   +    +YVTL PC  CA AI+ + I++L Y  +  K                
Sbjct: 58  AENGSS--IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP--GWDDILR---- 109

Query: 123 HHSPEIYPGISEQRSRQIIQDFFKERR 149
           +   E++  + ++   ++  +   E  
Sbjct: 110 NAGIEVF-NVPKKNLNKLNWENINEFC 135


>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase
           superfamily, substrate specificity, structural
           plasticity, hydrolase; 1.17A {Bacillus subtilis}
           (A:1-110)
          Length = 110

 Score = 87.9 bits (217), Expect = 5e-19
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 7   FMSCALEEAQNAALR-NEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRI 65
           F+  A+  A          P GAV V +  II+   N      D TAHAE+ AIR  C++
Sbjct: 14  FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 73

Query: 66  LSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGA 102
           L    L +  LY + EPC MC  AI  AR + ++Y A
Sbjct: 74  LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAA 110


>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich,
           protein-liand complex, hydrolase; HET: DCP DDN; 1.67A
           {Streptococcus mutans} PDB: 2hvv_A* (A:)
          Length = 184

 Score = 83.3 bits (205), Expect = 1e-17
 Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 25/149 (16%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTA-------------- 52
           FM+ A   ++ +   N   VGAV V NN+II+   N      D                 
Sbjct: 45  FMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRT 103

Query: 53  -HAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIE 111
            HAE+ A+    +          ++YVT  PC  C  A+  A ++++ Y  +        
Sbjct: 104 VHAEMNALIQCAK--EGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAI 161

Query: 112 NGTQFYTLATCHHSPEIYPGISEQRSRQI 140
                          E       +     
Sbjct: 162 ELMT-------QKEVEYVQHDVPRVKLGE 183


>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha,
           deaminase domain and reductase domain, hydrolase,
           oxidoreductase; 2.41A {Bacillus subtilis} (A:1-146)
          Length = 146

 Score = 82.2 bits (202), Expect = 3e-17
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 9/136 (6%)

Query: 7   FMSCALEEAQNAALRNEIP--VGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
           +M  AL+ A+    + E    VGAV V + +I+    +          HA  +A      
Sbjct: 17  YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 76

Query: 65  ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
                    ++          CA  I  + I+R++    +P       G           
Sbjct: 77  ADIYVT---LEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EA 129

Query: 125 SPEIYPGISEQRSRQI 140
             E+  GI   ++ ++
Sbjct: 130 GIEVREGILADQAERL 145


>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
           structural genomics, structural proteomics in europe,
           spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A*
           2o7p_A* (A:1-162)
          Length = 162

 Score = 79.1 bits (194), Expect = 2e-16
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 9/136 (6%)

Query: 7   FMSCALEEAQNAALRN--EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
           + + AL+ AQ           VG V V + +I+    ++         HA   A      
Sbjct: 33  YXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGEKAKG 92

Query: 65  ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
             +      ++          C  A+  A + R+     +P       G           
Sbjct: 93  ATAYV---TLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQ----QA 145

Query: 125 SPEIYPGISEQRSRQI 140
             ++  G+    + Q+
Sbjct: 146 GIDVSHGLXXSEAEQL 161


>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase,
           zinc-ION binding, hydrolase; 2.50A {Homo sapiens} (A:)
          Length = 190

 Score = 27.8 bits (62), Expect = 0.68
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 11/64 (17%)

Query: 48  KDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAIS--LARIR--------- 96
           +   AHAE              +   V  YV+  PC  CA  I   L++ +         
Sbjct: 59  EHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVG 118

Query: 97  RLYY 100
           RL+ 
Sbjct: 119 RLFM 122


>1qht_A Protein (DNA polymerase); archaea, hyperthermostable,
          family B polymerase, POL alpha family polymerase,
          transferase; 2.10A {Thermococcus SP} (A:131-329)
          Length = 199

 Score = 25.2 bits (54), Expect = 3.5
 Identities = 3/38 (7%), Positives = 13/38 (34%)

Query: 24 IPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRM 61
          + +        ++I+        +  V+   E++   +
Sbjct: 28 LMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFL 65


>2ixs_A SDAI restriction endonuclease; hydrolase, domain
          architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
          (A:160-323)
          Length = 164

 Score = 25.4 bits (56), Expect = 3.6
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 48 KDVTAHAEILAIRMGCRILSQEILPEVDLY 77
          K       I    +G        +P++ L+
Sbjct: 49 KHTRFEKRIFEETLGLTFDPHGRMPDLVLH 78


>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity
          clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase;
          HET: ATG ADP; 2.85A {Saccharomyces cerevisiae}
          (A:395-516)
          Length = 122

 Score = 25.1 bits (55), Expect = 3.8
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 38 SRAGNRNRELKDVTAH 53
          S++    R L+++  H
Sbjct: 11 SKSAKYYRLLQEIHYH 26


>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A;
           alpha/beta deaminase motif, zinc coordination, ionsitol
           hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo
           sapiens} (A:1-165,A:237-351)
          Length = 280

 Score = 24.8 bits (54), Expect = 4.9
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 38  SRAGNRNRELKDVTAHAEILAIRMGCRILSQEIL 71
               +R   L D   HAEI++ R   R L  ++ 
Sbjct: 83  EYMSDRGLALND--CHAEIISRRSLLRFLYTQLE 114


>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense,
           HOST-virus interaction, hydrolase, metal-binding, X-RAY,
           zinc, alternative splicing; HET: DNA; 2.25A {Homo
           sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
           (A:)
          Length = 207

 Score = 24.4 bits (53), Expect = 7.0
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 53  HAEILAIRMGC-RILSQEILPEVDLYVTLEPCTMCAAAIS--LAR---------IRRLYY 100
           HAE+  + +     L  +    V  + +  PC  CA  ++  +++           R+Y 
Sbjct: 80  HAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYD 139


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,156,899
Number of extensions: 48623
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 25
Length of query: 149
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 68
Effective length of database: 2,217,844
Effective search space: 150813392
Effective search space used: 150813392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)