RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate
deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str.
psy62]
(149 letters)
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A
{Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A
1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Length = 161
Score = 123 bits (309), Expect = 2e-29
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 11/145 (7%)
Query: 7 FMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
M A EEA +P+G + + ++ R N + T H EI + C
Sbjct: 17 GMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLEN-CG 75
Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
L ++ + LY TL PC MC AI + I R G + G ++
Sbjct: 76 RLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSK---GEKYL-----QT 127
Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149
+ ++R ++I++ F ER
Sbjct: 128 RGHEVVVVDDERCKKIMKQFIDERP 152
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP:
c.97.1.2
Length = 171
Score = 121 bits (304), Expect = 7e-29
Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
F+ AL EA+ A + E+PVGA+ V +IIS+A N ELKD TAHAE+LAI+ CR L
Sbjct: 26 FLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL 85
Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
+ + L +LYVTLEPC MC+ A+ L+RI ++ + A + K GG+ + T +H
Sbjct: 86 NTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRV 145
Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
+ E+ + +++ +FFK+ R
Sbjct: 146 KWEYYPLEE-ASELLSEFFKKLR 167
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein,
translation, tRNA processing, hydrolase, structural
genomics; 2.80A {Homo sapiens}
Length = 189
Score = 116 bits (291), Expect = 2e-27
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR------ 60
+M A+ A+ A E+PVG + V NN+++ + N + K+ T HAE++AI
Sbjct: 29 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88
Query: 61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
E+ LYVT+EPC MCAAA+ L +I + YG N + GG + +
Sbjct: 89 RQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 148
Query: 121 --TCHHSPEIYPGISEQRSRQIIQDFFKERR 149
+ PG + + ++++ F+K+
Sbjct: 149 LPNTGRPFQCIPGYRAEEAVEMLKTFYKQEN 179
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding
protein; 1.60A {Agrobacterium tumefaciens} SCOP:
c.97.1.2
Length = 144
Score = 111 bits (279), Expect = 5e-26
Identities = 86/144 (59%), Positives = 111/144 (77%)
Query: 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60
M + FM AL EA++A R+E+P+GAV VL+ ++I+R+GNR REL DVTAHAEI IR
Sbjct: 1 MAERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIR 60
Query: 61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
M C L QE LP DLYVTLEPCTMCAAAIS ARIRRLYYGA +PKGG +E+G +F++
Sbjct: 61 MACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQP 120
Query: 121 TCHHSPEIYPGISEQRSRQIIQDF 144
TCHH+P++Y G++E S +I++ F
Sbjct: 121 TCHHAPDVYSGLAESESAEILRQF 144
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex,
RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A
{Staphylococcus aureus subsp} SCOP: c.97.1.2
Length = 159
Score = 109 bits (273), Expect = 3e-25
Identities = 55/149 (36%), Positives = 83/149 (55%)
Query: 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60
M FM+ A+EEA+ AA E+P+GA+ ++++I+RA N L+ TAHAE +AI
Sbjct: 4 MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIE 63
Query: 61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
++L L LYVTLEPC MCA I ++RI R+ YGA +PKGG + +
Sbjct: 64 RAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQS 123
Query: 121 TCHHSPEIYPGISEQRSRQIIQDFFKERR 149
+H + G+ ++ ++ FFK R
Sbjct: 124 NFNHRAIVDKGVLKEACSTLLTTFFKNLR 152
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 107 bits (267), Expect = 1e-24
Identities = 53/149 (35%), Positives = 81/149 (54%)
Query: 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60
+++ FM AL+E++ + + EIP+G V V + +II R N E HAE++AI
Sbjct: 13 LEEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAIN 72
Query: 61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
L + L+VT+EPC MC+ AI LARI + YGASN K GG+++ Q T
Sbjct: 73 EANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDE 132
Query: 121 TCHHSPEIYPGISEQRSRQIIQDFFKERR 149
+H ++ G+ I+Q FF++ R
Sbjct: 133 RLNHRVQVERGLLAADCANIMQTFFRQGR 161
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily,
substrate specificity, structural plasticity, hydrolase;
1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Length = 164
Score = 104 bits (261), Expect = 6e-24
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 1/144 (0%)
Query: 7 FMSCALEEAQNAALRN-EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRI 65
F+ A+ A P GAV V + II+ N D TAHAE+ AIR C++
Sbjct: 14 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 73
Query: 66 LSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHS 125
L L + LY + EPC MC AI AR + ++Y A + F +
Sbjct: 74 LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPA 133
Query: 126 PEIYPGISEQRSRQIIQDFFKERR 149
E + + + F R
Sbjct: 134 EERTIPFYQVTLTEHLSPFQAWRN 157
>2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region;
structural genomics, PSI, protein structure initiative;
1.40A {Nitrosomonas europaea atcc 19718} SCOP: c.97.1.2
Length = 197
Score = 100 bits (251), Expect = 1e-22
Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNN--KIISRAGNRNRELKDVTAHAEILAIRMGCR 64
M LE + + P A + +I+ NR + AHAEILA+ +
Sbjct: 31 RMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQA 90
Query: 65 ILS-----QEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQF--- 116
L + LP +L + EPC MC A+ + +R L A + I
Sbjct: 91 KLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPE 150
Query: 117 -YTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149
+ + G+ + +++++
Sbjct: 151 NWMGGLEARGITVTTGLLRDAACALLREYNACNG 184
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer,
zinc, metalloenzyme, structural genomics, PSI, protein
structure initiative; 2.03A {Escherichia coli} SCOP:
c.97.1.2
Length = 168
Score = 99 bits (248), Expect = 2e-22
Identities = 57/143 (39%), Positives = 77/143 (53%)
Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
+M AL A+ A E+PVGAV V NN++I NR D TAHAEI+A+R G ++
Sbjct: 12 WMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71
Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
L + LYVTLEPC MCA A+ +RI R+ +GA + K G + +H
Sbjct: 72 QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRV 131
Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
EI GI ++ DFF+ RR
Sbjct: 132 EITEGILADECAALLSDFFRMRR 154
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino)uracil...; TM1828,
structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga
maritima} SCOP: c.71.1.2 c.97.1.2
Length = 360
Score = 76.1 bits (186), Expect = 3e-15
Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 14/148 (9%)
Query: 7 FMSCALEEAQNAALR--NEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
FM A+E A+ R PVGAV V + +II+ + HAE +AI +
Sbjct: 17 FMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHP----YFGGPHAERMAIESARK 72
Query: 65 ILSQEILPEVDLYVTLEPC------TMCAAAISLARIRRLYYGASNPKGGGIENGTQFYT 118
E L L VTLEPC C I + I+ + G +P +F
Sbjct: 73 KG--EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRN 130
Query: 119 LATCHHSPEIYPGISEQRSRQIIQDFFK 146
+ + + I K
Sbjct: 131 HGIEVIEGVLEEEVKKLCEFFITYVTKK 158
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
domain and reductase domain, hydrolase, oxidoreductase;
2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
2d5n_A* 3ex8_A*
Length = 373
Score = 74.2 bits (181), Expect = 1e-14
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 7 FMSCALEEAQNAALRNEI--PVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
+M AL+ A+ + E VGAV V + +I+ + K AHAE+ AI M
Sbjct: 17 YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHL----KYGEAHAEVHAIHMAG- 71
Query: 65 ILSQEILPEVDLYVTLEPC------TMCAAAISLARIRRLYYGASNPK----GGGIE 111
D+YVTLEPC CA I + I+R++ +P G GI
Sbjct: 72 ----AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGIS 124
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich,
protein-liand complex, hydrolase; HET: DCP DDN; 1.67A
{Streptococcus mutans} PDB: 2hvv_A*
Length = 184
Score = 72.5 bits (177), Expect = 4e-14
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDV---------------T 51
FM+ A ++ + VGAV V NN+II+ N D T
Sbjct: 45 FMANAELISKRSTCNR-AYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRT 103
Query: 52 AHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPK-GGGI 110
HAE+ A+ + ++YVT PC C A+ A ++++ Y + I
Sbjct: 104 VHAEMNALIQCAKE--GISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAI 161
Query: 111 E 111
E
Sbjct: 162 E 162
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A*
2o7p_A*
Length = 402
Score = 70.7 bits (172), Expect = 1e-13
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 21/157 (13%)
Query: 1 MKKGNVFMSCALEEAQNAALRN--EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILA 58
+ +M+ AL+ AQ VG V V + +I+ ++ + HAE+ A
Sbjct: 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ----RAGEPHAEVHA 82
Query: 59 IRMGCRILSQEILPEVDLYVTLEPC------TMCAAAISLARIRRLYYGASNPKGGGIEN 112
+RM YVTLEPC C A+ A + R+ +P
Sbjct: 83 LRMAGEKAKG-----ATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPN--PQVA 135
Query: 113 GTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149
G Y L ++ G+ + Q+ + F K R
Sbjct: 136 GRGLYRL--QQAGIDVSHGLMMSEAEQLNKGFLKRMR 170
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism,
nucleotide biosynthesis, zinc, hexamer, hydrolase,
metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Length = 178
Score = 62.1 bits (150), Expect = 4e-11
Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 25/120 (20%)
Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAG--------------------NRNRE 46
FM+ A AQ + N VGA V + I G N+
Sbjct: 16 FMAVAFLSAQRSKDPNS-QVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDT 74
Query: 47 LKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPK 106
HAE+ AI + +YV L PC CA I A I+ + + +
Sbjct: 75 KYPYVCHAELNAIMNKNLTDVKGC----SMYVALFPCNECAKLIIQAGIKEVIFMSDKYH 130
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN;
2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Length = 193
Score = 47.7 bits (112), Expect = 1e-06
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 12/143 (8%)
Query: 8 MSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRN---RELKDVTAHAEILAIRMGCR 64
L + ++A ++ P ++ + +R+ HAE+ AI
Sbjct: 56 QGWLLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAE 115
Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
S + +YVTL PC CA AI+ + I++L Y + K A
Sbjct: 116 NGSS--IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP--GWDDILRNAGI-- 169
Query: 125 SPEIYPGISEQRSRQIIQDFFKE 147
E++ + ++ ++ + E
Sbjct: 170 --EVF-NVPKKNLNKLNWENINE 189
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION
binding, hydrolase; 2.50A {Homo sapiens}
Length = 190
Score = 29.3 bits (66), Expect = 0.39
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 48 KDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAI 90
+ AHAE + V YV+ PC CA I
Sbjct: 59 EHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRI 101
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2jkr_A 2jkt_A
Length = 621
Score = 27.0 bits (59), Expect = 1.6
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 57 LAIRMGCRILSQEILPEVDLYV-------TLEPCTMCAAAISLARIRRLY 99
LA+ + S+E+ + +AA+ L R+ R
Sbjct: 130 LALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS 179
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 26.3 bits (57), Expect = 2.9
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 7/113 (6%)
Query: 8 MSCALEEAQ-NAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
+ E +E AV N+ + N +++D+T +
Sbjct: 101 IRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAA 160
Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFY 117
++ +PE D+ + PC SLA + + GT F+
Sbjct: 161 EHIRQHIPEHDVLLAGFPCQ----PFSLAGVSKKNSLGRAHGFACDTQGTLFF 209
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta
deaminase motif, zinc coordination, ionsitol
hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo
sapiens}
Length = 403
Score = 25.4 bits (55), Expect = 5.6
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 32 LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEIL 71
+N + +S G L D HAEI++ R R L ++
Sbjct: 80 INGEYMSDRGLA---LND--CHAEIISRRSLLRFLYTQLE 114
>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus
interaction, hydrolase, metal-binding, X-RAY, zinc,
alternative splicing; HET: DNA; 2.25A {Homo sapiens}
PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Length = 207
Score = 25.2 bits (55), Expect = 6.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 53 HAEILAIRMGC-RILSQEILPEVDLYVTLEPCTMCAAAI 90
HAE+ + + L + V + + PC CA +
Sbjct: 80 HAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEM 118
>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP
pathway, oxidoreductase, isoprene biosynthesis,
metal-binding; 1.9A {Mycobacterium tuberculosis} PDB:
2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A*
Length = 413
Score = 25.0 bits (54), Expect = 7.8
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 13 EEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEI-- 70
EEA A L I A+ + ++ A E V ++L + R +Q
Sbjct: 331 EEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATV---DDVLDAQRWARERAQRAVS 387
Query: 71 -LPEVDLYVTLEPCTMCAAAISLAR 94
+ V + T +P A +L R
Sbjct: 388 GMASVAIASTAKPGAAGRHASTLER 412
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 24.7 bits (53), Expect = 8.2
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 45 RELKDVTAHAEILAIRMGCRILSQEILPEVDLYV-----TLEPCTMCAAAISLARIRRLY 99
+L T + LA+ + S E+ ++ V T AA+ + R
Sbjct: 114 NDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV 173
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B.
anthracis, structural genomics, PSI, protein structure
initiative; 1.60A {Bacillus anthracis str} SCOP:
b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Length = 254
Score = 24.7 bits (53), Expect = 8.3
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 95 IRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQ 142
+ ++ + + G Q TL+TC + + R ++
Sbjct: 206 LEKIQEKSLYKTDTTVTAGDQIVTLSTCD------YALDPEAGRLVVH 247
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.135 0.394
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,314,185
Number of extensions: 57809
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 26
Length of query: 149
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 65
Effective length of database: 3,656,734
Effective search space: 237687710
Effective search space used: 237687710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)