RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate
deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str.
psy62]
         (149 letters)



>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 151

 Score =  116 bits (290), Expect = 1e-27
 Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 1/143 (0%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           F+  AL EA+ A  + E+PVGA+ V   +IIS+A N   ELKD TAHAE+LAI+  CR L
Sbjct: 6   FLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL 65

Query: 67  SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
           + + L   +LYVTLEPC MC+ A+ L+RI ++ + A + K GG+ +        T +H  
Sbjct: 66  NTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRV 125

Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
           +      E+ + +++ +FFK+ R
Sbjct: 126 KWEYYPLEE-ASELLSEFFKKLR 147


>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
           CodA {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 130

 Score =  107 bits (267), Expect = 5e-25
 Identities = 81/125 (64%), Positives = 100/125 (80%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           FM  AL EA++A  R+E+P+GAV VL+ ++I+R+GNR REL DVTAHAEI  IRM C  L
Sbjct: 6   FMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL 65

Query: 67  SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
            QE LP  DLYVTLEPCTMCAAAIS ARIRRLYYGA +PKGG +E+G +F++  TCHH+P
Sbjct: 66  GQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAP 125

Query: 127 EIYPG 131
           ++Y G
Sbjct: 126 DVYSG 130


>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 151

 Score =  101 bits (253), Expect = 2e-23
 Identities = 55/149 (36%), Positives = 83/149 (55%)

Query: 1   MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60
           M     FM+ A+EEA+ AA   E+P+GA+   ++++I+RA N    L+  TAHAE +AI 
Sbjct: 1   MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIE 60

Query: 61  MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
              ++L    L    LYVTLEPC MCA  I ++RI R+ YGA +PKGG   +       +
Sbjct: 61  RAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQS 120

Query: 121 TCHHSPEIYPGISEQRSRQIIQDFFKERR 149
             +H   +  G+ ++    ++  FFK  R
Sbjct: 121 NFNHRAIVDKGVLKEACSTLLTTFFKNLR 149


>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas
           europaea [TaxId: 915]}
          Length = 189

 Score =  101 bits (253), Expect = 2e-23
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 11/154 (7%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNN--KIISRAGNRNRELKDVTAHAEILAIRMGCR 64
            M   LE  +     +  P  A     +   +I+   NR    +   AHAEILA+ +   
Sbjct: 29  RMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQA 88

Query: 65  ILS-----QEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQF--- 116
            L       + LP  +L  + EPC MC  A+  + +R L   A +     I         
Sbjct: 89  KLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPE 148

Query: 117 -YTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149
            +          +  G+    +  +++++     
Sbjct: 149 NWMGGLEARGITVTTGLLRDAACALLREYNACNG 182


>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
           [TaxId: 1423]}
          Length = 158

 Score =  101 bits (252), Expect = 3e-23
 Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 1/144 (0%)

Query: 7   FMSCALEEAQNAALRN-EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRI 65
           F+  A+  A          P GAV V +  II+   N      D TAHAE+ AIR  C++
Sbjct: 8   FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 67

Query: 66  LSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHS 125
           L    L +  LY + EPC MC  AI  AR + ++Y A +           F        +
Sbjct: 68  LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPA 127

Query: 126 PEIYPGISEQRSRQIIQDFFKERR 149
            E      +    + +  F   R 
Sbjct: 128 EERTIPFYQVTLTEHLSPFQAWRN 151


>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
           {Escherichia coli [TaxId: 562]}
          Length = 156

 Score = 99.6 bits (247), Expect = 1e-22
 Identities = 57/143 (39%), Positives = 77/143 (53%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66
           +M  AL  A+ A    E+PVGAV V NN++I    NR     D TAHAEI+A+R G  ++
Sbjct: 10  WMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 69

Query: 67  SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126
               L +  LYVTLEPC MCA A+  +RI R+ +GA + K G   +          +H  
Sbjct: 70  QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRV 129

Query: 127 EIYPGISEQRSRQIIQDFFKERR 149
           EI  GI       ++ DFF+ RR
Sbjct: 130 EITEGILADECAALLSDFFRMRR 152


>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 156

 Score = 93.0 bits (230), Expect = 9e-21
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 7   FMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
            M  A EEA        +P+G   +   +  ++ R  N   +    T H EI  +    R
Sbjct: 12  GMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 71

Query: 65  ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
           +   ++  +  LY TL PC MC  AI +  I R   G +       E             
Sbjct: 72  L-EGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKGE--------KYLQT 122

Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149
                  + ++R ++I++ F  ER 
Sbjct: 123 RGHEVVVVDDERCKKIMKQFIDERP 147


>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD
           {Bacillus subtilis [TaxId: 1423]}
          Length = 145

 Score = 70.3 bits (171), Expect = 7e-14
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 7   FMSCALEEAQNAALRNEI--PVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
           +M  AL+ A+    + E    VGAV V + +I+    +          HA  +A      
Sbjct: 5   YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64

Query: 65  ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
               +I   ++          CA  I  + I+R++    +P       G           
Sbjct: 65  ---ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EA 117

Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149
             E+  GI   ++ ++ + F    R
Sbjct: 118 GIEVREGILADQAERLNEKFLHFMR 142


>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD
           {Thermotoga maritima [TaxId: 2336]}
          Length = 147

 Score = 63.0 bits (152), Expect = 1e-11
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 7/145 (4%)

Query: 7   FMSCALEEAQNAALR--NEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
           FM  A+E A+    R     PVGAV V + +II+   +           A   A + G  
Sbjct: 5   FMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGED 64

Query: 65  ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124
           +    ++  ++          C   I  + I+ +  G  +P        +        +H
Sbjct: 65  LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPN-----PVSGNGVEKFRNH 119

Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149
             E+  G+ E+  +++ + F     
Sbjct: 120 GIEVIEGVLEEEVKKLCEFFITYVT 144


>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
           [TaxId: 10665]}
          Length = 193

 Score = 58.8 bits (141), Expect = 2e-10
 Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 64/200 (32%)

Query: 1   MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGN------------------ 42
           MK  +  +  A   +Q +   +   VGAV   N +IIS   N                  
Sbjct: 1   MKA-STVLQIAYLVSQESKCCS-WKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGW 58

Query: 43  -----------------------------------RNRELKDVTAHAEILAIRMGCRILS 67
                                               +        HAE+ AI       S
Sbjct: 59  LLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGS 118

Query: 68  QEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPE 127
              +    +YVTL PC  CA AI+ + I++L Y  +  K             A      E
Sbjct: 119 S--IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP--GWDDILRNAGI----E 170

Query: 128 IYPGISEQRSRQIIQDFFKE 147
           ++  + ++   ++  +   E
Sbjct: 171 VF-NVPKKNLNKLNWENINE 189


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.7 bits (53), Expect = 3.5
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 45  RELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL-------EPCTMCAAAISLARIRR 97
            +L         LA+     + S+E+       +               +AA+ L R+ R
Sbjct: 110 NDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR 169

Query: 98  LY 99
             
Sbjct: 170 TS 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 569,012
Number of extensions: 25241
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)