RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str. psy62] (149 letters) >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Score = 116 bits (290), Expect = 1e-27 Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 1/143 (0%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 F+ AL EA+ A + E+PVGA+ V +IIS+A N ELKD TAHAE+LAI+ CR L Sbjct: 6 FLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL 65 Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126 + + L +LYVTLEPC MC+ A+ L+RI ++ + A + K GG+ + T +H Sbjct: 66 NTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRV 125 Query: 127 EIYPGISEQRSRQIIQDFFKERR 149 + E+ + +++ +FFK+ R Sbjct: 126 KWEYYPLEE-ASELLSEFFKKLR 147 >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Score = 107 bits (267), Expect = 5e-25 Identities = 81/125 (64%), Positives = 100/125 (80%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 FM AL EA++A R+E+P+GAV VL+ ++I+R+GNR REL DVTAHAEI IRM C L Sbjct: 6 FMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL 65 Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126 QE LP DLYVTLEPCTMCAAAIS ARIRRLYYGA +PKGG +E+G +F++ TCHH+P Sbjct: 66 GQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAP 125 Query: 127 EIYPG 131 ++Y G Sbjct: 126 DVYSG 130 >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 Score = 101 bits (253), Expect = 2e-23 Identities = 55/149 (36%), Positives = 83/149 (55%) Query: 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60 M FM+ A+EEA+ AA E+P+GA+ ++++I+RA N L+ TAHAE +AI Sbjct: 1 MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIE 60 Query: 61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120 ++L L LYVTLEPC MCA I ++RI R+ YGA +PKGG + + Sbjct: 61 RAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQS 120 Query: 121 TCHHSPEIYPGISEQRSRQIIQDFFKERR 149 +H + G+ ++ ++ FFK R Sbjct: 121 NFNHRAIVDKGVLKEACSTLLTTFFKNLR 149 >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Score = 101 bits (253), Expect = 2e-23 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 11/154 (7%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNN--KIISRAGNRNRELKDVTAHAEILAIRMGCR 64 M LE + + P A + +I+ NR + AHAEILA+ + Sbjct: 29 RMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQA 88 Query: 65 ILS-----QEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQF--- 116 L + LP +L + EPC MC A+ + +R L A + I Sbjct: 89 KLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPE 148 Query: 117 -YTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 + + G+ + +++++ Sbjct: 149 NWMGGLEARGITVTTGLLRDAACALLREYNACNG 182 >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Score = 101 bits (252), Expect = 3e-23 Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 1/144 (0%) Query: 7 FMSCALEEAQNAALRN-EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRI 65 F+ A+ A P GAV V + II+ N D TAHAE+ AIR C++ Sbjct: 8 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 67 Query: 66 LSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHS 125 L L + LY + EPC MC AI AR + ++Y A + F + Sbjct: 68 LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPA 127 Query: 126 PEIYPGISEQRSRQIIQDFFKERR 149 E + + + F R Sbjct: 128 EERTIPFYQVTLTEHLSPFQAWRN 151 >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Score = 99.6 bits (247), Expect = 1e-22 Identities = 57/143 (39%), Positives = 77/143 (53%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 +M AL A+ A E+PVGAV V NN++I NR D TAHAEI+A+R G ++ Sbjct: 10 WMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 69 Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126 L + LYVTLEPC MCA A+ +RI R+ +GA + K G + +H Sbjct: 70 QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRV 129 Query: 127 EIYPGISEQRSRQIIQDFFKERR 149 EI GI ++ DFF+ RR Sbjct: 130 EITEGILADECAALLSDFFRMRR 152 >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Score = 93.0 bits (230), Expect = 9e-21 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 11/145 (7%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 M A EEA +P+G + + ++ R N + T H EI + R Sbjct: 12 GMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 71 Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124 + ++ + LY TL PC MC AI + I R G + E Sbjct: 72 L-EGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKGE--------KYLQT 122 Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149 + ++R ++I++ F ER Sbjct: 123 RGHEVVVVDDERCKKIMKQFIDERP 147 >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Score = 70.3 bits (171), Expect = 7e-14 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 9/145 (6%) Query: 7 FMSCALEEAQNAALRNEI--PVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 +M AL+ A+ + E VGAV V + +I+ + HA +A Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64 Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124 +I ++ CA I + I+R++ +P G Sbjct: 65 ---ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EA 117 Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149 E+ GI ++ ++ + F R Sbjct: 118 GIEVREGILADQAERLNEKFLHFMR 142 >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Score = 63.0 bits (152), Expect = 1e-11 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 7/145 (4%) Query: 7 FMSCALEEAQNAALR--NEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 FM A+E A+ R PVGAV V + +II+ + A A + G Sbjct: 5 FMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGED 64 Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124 + ++ ++ C I + I+ + G +P + +H Sbjct: 65 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPN-----PVSGNGVEKFRNH 119 Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149 E+ G+ E+ +++ + F Sbjct: 120 GIEVIEGVLEEEVKKLCEFFITYVT 144 >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Score = 58.8 bits (141), Expect = 2e-10 Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 64/200 (32%) Query: 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGN------------------ 42 MK + + A +Q + + VGAV N +IIS N Sbjct: 1 MKA-STVLQIAYLVSQESKCCS-WKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGW 58 Query: 43 -----------------------------------RNRELKDVTAHAEILAIRMGCRILS 67 + HAE+ AI S Sbjct: 59 LLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGS 118 Query: 68 QEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPE 127 + +YVTL PC CA AI+ + I++L Y + K A E Sbjct: 119 S--IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP--GWDDILRNAGI----E 170 Query: 128 IYPGISEQRSRQIIQDFFKE 147 ++ + ++ ++ + E Sbjct: 171 VF-NVPKKNLNKLNWENINE 189 >d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 584 Score = 24.7 bits (53), Expect = 3.5 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%) Query: 45 RELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL-------EPCTMCAAAISLARIRR 97 +L LA+ + S+E+ + +AA+ L R+ R Sbjct: 110 NDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR 169 Query: 98 LY 99 Sbjct: 170 TS 171 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.135 0.394 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 569,012 Number of extensions: 25241 Number of successful extensions: 68 Number of sequences better than 10.0: 1 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 14 Length of query: 149 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 72 Effective length of database: 1,350,386 Effective search space: 97227792 Effective search space used: 97227792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.2 bits)