BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate
deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str.
psy62]
         (149 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 149

 Score =  308 bits (789), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60
           MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR
Sbjct: 1   MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60

Query: 61  MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120
           MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA
Sbjct: 61  MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120

Query: 121 TCHHSPEIYPGISEQRSRQIIQDFFKERR 149
           TCHHSPEIYPGISEQRSRQIIQDFFKERR
Sbjct: 121 TCHHSPEIYPGISEQRSRQIIQDFFKERR 149


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score = 22.3 bits (46), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 98  LYYGASNPKGGGIENGTQFYTLATCHHSPEI 128
           ++ G +  KG     GT  + +A C  +PEI
Sbjct: 287 IFTGKTEKKG--THRGTVEWAIAWCEENPEI 315


>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
          reductase/diaminohydroxyphosphoribosylaminopyrimidine
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 21.6 bits (44), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 77 YVTLEPCT 84
          YVTLEPC+
Sbjct: 73 YVTLEPCS 80


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,535
Number of Sequences: 1233
Number of extensions: 3264
Number of successful extensions: 8
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 149
length of database: 328,796
effective HSP length: 66
effective length of query: 83
effective length of database: 247,418
effective search space: 20535694
effective search space used: 20535694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 34 (17.7 bits)