Query gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 382 No_of_seqs 122 out of 896 Neff 4.8 Searched_HMMs 39220 Date Sun May 29 15:44:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764465.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK09561 nhaA pH-dependent sod 100.0 0 0 974.3 39.2 377 1-381 1-386 (388) 2 TIGR00773 NhaA Na+/H+ antiport 100.0 0 0 983.1 28.5 369 7-375 1-415 (415) 3 PRK09560 nhaA pH-dependent sod 100.0 0 0 972.2 37.8 377 2-382 3-380 (382) 4 pfam06965 Na_H_antiport_1 Na+/ 100.0 0 0 966.0 35.7 367 9-375 1-374 (374) 5 COG3004 NhaA Na+/H+ antiporter 100.0 0 0 928.7 30.2 378 1-382 5-389 (390) 6 pfam00999 Na_H_Exchanger Sodiu 99.4 2.9E-09 7.5E-14 74.3 25.1 296 52-376 48-371 (371) 7 COG0475 KefB Kef-type K+ trans 99.4 1.2E-09 3E-14 76.6 21.5 272 50-347 56-354 (397) 8 PRK03659 glutathione-regulated 98.4 0.00015 3.9E-09 45.9 19.8 263 15-306 10-315 (602) 9 PRK03562 glutathione-regulated 98.0 0.0012 3E-08 40.6 19.3 300 15-347 9-348 (615) 10 KOG1650 consensus 98.0 0.0012 3.1E-08 40.5 18.7 308 46-380 78-423 (769) 11 PRK10669 putative cation:proto 97.2 0.015 3.9E-07 33.9 28.9 261 50-347 55-357 (558) 12 TIGR00932 2a37 transporter, mo 96.3 0.078 2E-06 29.6 11.6 205 48-273 56-314 (314) 13 KOG1291 consensus 92.1 0.74 1.9E-05 23.7 6.7 172 122-301 116-321 (503) 14 COG0025 NhaP NhaP-type Na+/H+ 88.5 1.6 4.1E-05 21.7 22.3 277 49-346 51-368 (429) 15 PRK05326 potassium/proton anti 84.2 2.7 6.9E-05 20.3 21.2 264 48-345 55-352 (563) 16 PRK03854 mdoC glucans biosynth 78.1 4.5 0.00011 19.0 7.1 99 4-108 8-112 (374) 17 TIGR00827 EIIC-GAT PTS system, 71.0 6.8 0.00017 17.9 4.4 105 192-299 113-232 (407) 18 TIGR02660 nifV_homocitr homoci 63.8 1.3 3.4E-05 22.2 -0.8 12 208-219 279-290 (369) 19 KOG4505 consensus 62.4 10 0.00026 16.9 7.3 108 53-161 72-182 (467) 20 TIGR00831 a_cpa1 Na+/H+ antipo 60.5 11 0.00028 16.7 4.0 248 91-347 81-376 (541) 21 pfam11833 DUF3353 Protein of u 52.4 15 0.00038 15.9 5.8 40 159-199 102-141 (193) 22 PRK09867 hypothetical protein; 51.1 16 0.0004 15.8 4.8 68 182-255 44-111 (209) 23 TIGR02123 TRAP_fused TRAP tran 46.8 18 0.00047 15.4 2.9 145 88-233 65-250 (681) 24 TIGR03368 cellulose_yhjU cellu 45.5 19 0.00049 15.2 3.2 24 169-192 91-114 (518) 25 pfam11658 DUF3260 Protein of u 45.2 19 0.00049 15.2 3.3 24 169-192 90-113 (516) 26 pfam12046 DUF3529 Protein of u 41.7 22 0.00056 14.9 6.4 54 141-194 79-132 (173) 27 cd06855 GT_GPT_euk UDP-GlcNAc: 41.4 22 0.00057 14.8 2.5 16 79-94 83-98 (283) 28 COG3696 Putative silver efflux 41.3 22 0.00057 14.8 7.2 56 260-323 453-508 (1027) 29 pfam11922 DUF3440 Domain of un 41.0 22 0.00057 14.9 2.4 46 279-325 25-71 (157) 30 TIGR01415 trpB_rel pyridoxal-p 39.5 24 0.00061 14.7 2.7 42 50-93 219-272 (426) 31 COG3775 GatC Phosphotransferas 39.2 24 0.00061 14.6 6.0 103 126-229 47-159 (446) 32 TIGR02831 spo_II_M stage II sp 38.6 25 0.00063 14.6 4.9 50 333-382 104-160 (201) 33 TIGR01833 HMG-CoA-S_euk hydrox 37.7 25 0.00065 14.5 2.3 43 100-142 121-175 (461) 34 pfam01350 Flavi_NS4A Flaviviru 37.1 26 0.00066 14.4 7.5 63 177-239 58-127 (145) 35 TIGR01948 rnfE electron transp 36.4 26 0.00067 14.4 2.1 48 285-341 93-140 (204) 36 PRK00665 petG cytochrome b6-f 35.4 28 0.00071 14.3 3.8 32 281-312 2-33 (38) 37 pfam03956 DUF340 Membrane prot 35.0 28 0.00072 14.2 4.5 61 49-109 19-82 (191) 38 TIGR01829 AcAcCoA_reduct aceto 33.1 19 0.00048 15.3 1.0 19 327-346 153-171 (244) 39 pfam04346 EutH Ethanolamine ut 32.7 31 0.00078 14.0 2.2 33 341-375 316-348 (354) 40 COG1113 AnsP Gamma-aminobutyra 31.9 32 0.00081 13.9 14.9 202 48-273 199-425 (462) 41 PRK09597 lipid A 1-phosphatase 31.6 32 0.00081 13.9 3.7 29 221-249 28-56 (190) 42 pfam09997 DUF2238 Predicted me 31.6 32 0.00082 13.9 2.6 66 184-255 6-71 (143) 43 PRK03735 cytochrome b6; Provis 28.9 36 0.00091 13.6 5.4 138 42-197 75-215 (216) 44 pfam09512 ThiW Thiamine-precur 28.9 36 0.00091 13.6 7.5 121 247-381 30-150 (150) 45 PRK09921 permease DsdX; Provis 27.3 38 0.00097 13.4 4.9 50 131-180 92-147 (445) 46 PRK00523 hypothetical protein; 25.7 41 0.001 13.3 3.8 40 283-324 6-45 (73) 47 pfam04796 RepA_C Plasmid encod 23.1 32 0.00083 13.9 0.7 59 265-323 101-161 (161) 48 pfam02529 PetG Cytochrome B6-F 21.0 50 0.0013 12.7 2.9 30 282-311 3-32 (37) No 1 >PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Probab=100.00 E-value=0 Score=974.28 Aligned_cols=377 Identities=37% Similarity=0.708 Sum_probs=360.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--HH--CCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 951478985321557999999999999833871243334--31--124335----6769999876799999999999999 Q gi|255764465|r 1 MTKNKFFLYRDNFTGILLISTTFITMILANISFSSAYYF--DA--LEYKIA----NLTLRDWVNDILMILYFFMIGLELK 72 (382) Q Consensus 1 ~~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~--~~--~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiK 72 (382) |++.|+|+|+|++||++|+.+|++|++||||||++.||+ ++ .+.+++ ++|++||||||||++|||+|||||| T Consensus 1 ~~~l~~fl~~e~~~GilLl~at~~Ali~ANsp~~~~~y~~~~~~~~~~~~g~~~l~~~l~~wiNDgLMaiFFf~vGLEiK 80 (388) T PRK09561 1 MKHLHRFFSSDASGGIILIIAAALAMLMANSGATSGWYHDFLETPVQLRVGALEINKNMLLWINDALMAVFFLLVGLEVK 80 (388) T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 93489988433248999999999999998597136689999727202331642056649999865799999999999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 99864867899998999999877889999998982379800035045533773789999999842788899999999999 Q gi|255764465|r 73 HELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALT 152 (382) Q Consensus 73 rE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLA 152 (382) ||++.|||||+||+++|++||+|||++||+||+.+|.++|++.+|||||||||||||+|+++++|+|+|+++|+||++|| T Consensus 81 rE~~~GeLs~~r~a~lPi~AAlGGm~vPAlIY~~~n~~~~~~~~GW~IP~ATDIAFAlgvLallg~rvP~~lrvFLlaLA 160 (388) T PRK09561 81 RELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA 160 (388) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99873877987898878999980550989989741058854235634235205999999999955668879999999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC Q ss_conf 87544799888864177666799999999999999986259861237899999999999712865678988886317678 Q gi|255764465|r 153 MIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDI 232 (382) Q Consensus 153 IvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~ 232 (382) |+||+|||+|||+|||+++++.||..+.+++.+++.+||+++++.++|.++|+++|+++|+||||||+|||++|+++|.+ T Consensus 161 IvDDlgAIlVIAiFYt~~i~~~~L~~a~~~~~~l~~ln~~~v~~~~~Y~~lG~~lW~~~~~SGvHaTiAGV~la~~iP~~ 240 (388) T PRK09561 161 IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK 240 (388) T ss_pred HHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC T ss_conf 98631112466753078866999999999999999999849961479999999999999850451899989999503666 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 77789400003788763420443247879998851263246764787310269999999864455899999999996175 Q gi|255764465|r 233 KNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGW 312 (382) Q Consensus 233 ~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~ 312 (382) +++ .++|.+|+||.+||||+|+|+|+|||+||||++++.+.+++++|+++||++||++|||+||++++|+++|+++ T Consensus 241 ~~~----~~sp~~rleh~l~p~v~~~ilPlFAfaNAGV~l~~~~~~~l~~~v~lGI~~GL~iGK~lGI~~~~~la~kl~~ 316 (388) T PRK09561 241 EKH----GRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKL 316 (388) T ss_pred CCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC T ss_conf 556----7896999998751047889889999850475646663776417489999999981642879999999998276 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 438999899999999998755899999986640687-257887655999999999999999999414778 Q gi|255764465|r 313 GKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPN-ANNLQEKAKIGIILSSVISIIYAYLVFKIPLRK 381 (382) Q Consensus 313 ~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~~-~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~k 381 (382) +++|++++|+|++++|+||||||||||||++|||++ +++.+|++|+|||++|++|+++|+.++|++.|. T Consensus 317 a~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aK~giL~~S~~sai~G~~~Lri~~r~ 386 (388) T PRK09561 317 AHLPEGTTYQQIMAVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSILSAVIGYSWLRVRLRP 386 (388) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 7799999888999999998888999999998526899977886689999999999999999999864168 No 2 >TIGR00773 NhaA Na+/H+ antiporter NhaA; InterPro: IPR004670 The Escherichia coli NhaA Na+:H+ Antiporter (NhaA) protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. ; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane. Probab=100.00 E-value=0 Score=983.12 Aligned_cols=369 Identities=40% Similarity=0.752 Sum_probs=353.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHH---HHHCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9853215579999999999998338-7124333---431124335----6769999876799999999999999998648 Q gi|255764465|r 7 FLYRDNFTGILLISTTFITMILANI-SFSSAYY---FDALEYKIA----NLTLRDWVNDILMILYFFMIGLELKHELIHG 78 (382) Q Consensus 7 F~~~e~~~gilLl~aa~~Al~~ANs-~~~~~y~---~~~~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~G 78 (382) |++.|++|||+|++++++|++.||| +.++.|+ +++.+.+++ +++++|||||+|||+||++||||+|||+..| T Consensus 1 Ffk~es~GGIlL~~~A~~AM~~ANsG~l~~~Y~~~l~tp~~~~ig~~~~g~~~~~WInD~LMAvFFlLiGLEvKrELl~G 80 (415) T TIGR00773 1 FFKSESAGGILLVIAAVLAMVIANSGALSESYQDFLHTPVSLQIGSFVIGKSLLHWINDGLMAVFFLLIGLEVKRELLEG 80 (415) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 95552142299999999999985462011468898608610355003344422546757899999999988998988521 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67899998999999877889999998982379800035045533773789999999842788899999999999875447 Q gi|255764465|r 79 ELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFS 158 (382) Q Consensus 79 eLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlg 158 (382) +|++.|||++|.+||+|||++||+||+.+|..||.+.+|||||||||||||+||++++|||||.+||+||+||||+|||| T Consensus 81 ~L~s~~~A~FP~IAAiGGM~~PaliY~~~n~~dP~~~~GwaIP~ATDIAFALGv~aLLgkrVP~~LKvFLlaLAiiDDLG 160 (415) T TIGR00773 81 ALSSLKQAIFPVIAAIGGMIAPALIYLAFNANDPSAREGWAIPAATDIAFALGVLALLGKRVPLALKVFLLALAIIDDLG 160 (415) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC T ss_conf 05532010351577763568999999997037841005766760778999999999835889736899999999985178 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99888864177666799999999999999986259861237899999999999712865678988886317678777894 Q gi|255764465|r 159 AIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSP 238 (382) Q Consensus 159 aIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~ 238 (382) +|+|||+|||++++..+|..+...+.++.++||+++++..+|+++|+++|.|++|||||||+|||++||.||.|.++.+. T Consensus 161 aiViIALFYt~~Ls~~~L~~a~~~~~VL~~LN~~~v~~l~~Y~~vG~~LW~aVlkSGvHATlAgVi~gF~IPlK~~~g~~ 240 (415) T TIGR00773 161 AIVIIALFYTSDLSVAALLVAAVAILVLALLNRLNVRKLIVYLLVGVILWFAVLKSGVHATLAGVIIGFAIPLKGKKGEK 240 (415) T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 05887430036367999999999999999984542677889999999999999730178999999998632567888740 Q ss_pred C------------------------------------CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 0------------------------------------0003788763420443247879998851263246764787310 Q gi|255764465|r 239 S------------------------------------NRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISD 282 (382) Q Consensus 239 ~------------------------------------~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~ 282 (382) + -++|++|+||.|||||+|.|||+||||||||+++|.+.+..+| T Consensus 241 ~vellelGkryaetssGallske~~eilhsieekasal~sPl~~lEH~L~p~~ay~ILPLFAFANAGvSl~G~~~~~~~s 320 (415) T TIGR00773 241 SVELLELGKRYAETSSGALLSKEQQEILHSIEEKASALQSPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSINGLTS 320 (415) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEHHHHH T ss_conf 36787753355432112455467789999888666775063676345550588999978888640570231203023563 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHHH Q ss_conf 26999999986445589999999999617543899989999999999875589999998664068-7-257887655999 Q gi|255764465|r 283 PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFP-N-ANNLQEKAKIGI 360 (382) Q Consensus 283 pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~-~-~~~~~~~aKlgI 360 (382) ++.+||+.||++|||+|||.|||+++|+|++++|+|+||+|++++|+|||||||||+||++|||+ + +++..+.||+|| T Consensus 321 ~l~Lgi~~GL~~GKPlGIf~f~~~a~kL~~a~lP~Gi~f~~I~av~~LcGIGFTMS~FissLAF~a~~~~~~~~~A~lgI 400 (415) T TIGR00773 321 MLLLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKHIFAVGVLCGIGFTMSIFISSLAFGANVDEELDTYAKLGI 400 (415) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 56799999886036146889999999712003889862888899999950047899999876316665644899999999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|255764465|r 361 ILSSVISIIYAYLVF 375 (382) Q Consensus 361 L~~S~~aailG~~~l 375 (382) |+||..|+++||.+| T Consensus 401 L~GS~~sa~~Gy~~L 415 (415) T TIGR00773 401 LLGSLISAILGYLYL 415 (415) T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999998509 No 3 >PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Probab=100.00 E-value=0 Score=972.16 Aligned_cols=377 Identities=36% Similarity=0.693 Sum_probs=363.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 51478985321557999999999999833871243334311243356769999876799999999999999998648678 Q gi|255764465|r 2 TKNKFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIANLTLRDWVNDILMILYFFMIGLELKHELIHGELS 81 (382) Q Consensus 2 ~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~~~~~~~~~~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs 81 (382) ...|+|+|+|++||++|+.+|++|++||||||++.|+.. ++..++++|++|||||+||++|||+||||||||++.|||| T Consensus 3 ~~~~~fl~~e~~~GilLl~a~~~Ali~ANs~~~~~Y~~~-~~~~~~~~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~ 81 (382) T PRK09560 3 DVIRDFFKMESAGGILLVIAAAIAMVIANSPLGEMYQAF-LHTYVFGMSVSHWINDGLMAVFFLLIGLEVKRELLEGALK 81 (382) T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 699999871325799999999999999868448999999-8522036669999977899999999999999998548679 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998999999877889999998982379800035045533773789999999842788899999999999875447998 Q gi|255764465|r 82 SWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIA 161 (382) Q Consensus 82 ~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIl 161 (382) |+||+++|++||+|||++||+||+.+|+++|++.||||||||||||||+|+++++|+|+|+++|+||++|||+||+|||+ T Consensus 82 ~~~~a~lPi~AA~GGm~~PAlIY~~~n~~~~~~~~GW~IP~ATDIAFalgvlallg~rvP~~lr~FLlaLAIvDDlgaI~ 161 (382) T PRK09560 82 SKETAIFPAIAAVGGMLAPALIYVAFNFNDPEAISGWAIPAATDIAFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVV 161 (382) T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCE T ss_conf 87888888999980440988888113158831026513246017999999999965768879999999999986200215 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 88864177666799999999999999986259861237899999999999712865678988886317678777894000 Q gi|255764465|r 162 IMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNR 241 (382) Q Consensus 162 VIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~ 241 (382) |||+|||+++++.||..+.+++..++.+||++++++++|.++|+++|+|+|+||||||+|||++|+++|.++++. ++ T Consensus 162 VIA~FYt~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~G~~lW~~~~~SGiHaTiAGV~la~~iP~~~~~~---~~ 238 (382) T PRK09560 162 IIALFYSSDLSTLALTVGFAMTGVLFMLNAKHVTKLSWYLIVGFILWVAVLKSGVHATLAGVVIGFAIPLKGKKG---EH 238 (382) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC---CC T ss_conf 888750898779999999999999999985388621799999999999999705429999999995067777778---88 Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 03788763420443247879998851263246764787310269999999864455899999999996175438999899 Q gi|255764465|r 242 ISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNW 321 (382) Q Consensus 242 ~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w 321 (382) +|++|+||.+||||+|+|+|+|||+||||++++.+.+++++|+++||++||++|||+||++++|+++|+|++++|++++| T Consensus 239 spl~rleh~l~p~v~~~IlPlFAfaNAGV~l~~~~~~~l~~~v~~gI~~GL~vGK~lGI~~~s~la~kl~~~~lP~g~~w 318 (382) T PRK09560 239 SPLKHMEHALHPYVAFAILPVFAFANAGISLEGVSLSGLTSMLPLGIALGLFLGKPLGIFSFSWAAVKLGVAKLPEGVNF 318 (382) T ss_pred CHHHHHHHHHCCCCCEEHHHHHHHHCCCEEECCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 98999999835231032477788741561005776787636689999999983333769999999999386779999988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999998755899999986640687-2578876559999999999999999994147789 Q gi|255764465|r 322 CLLYGGSILCGIGFTMSLFLTLQAFPN-ANNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK 382 (382) Q Consensus 322 ~~l~~v~~LaGIGFTmSLfIa~LAF~~-~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk 382 (382) +|++++|+||||||||||||++|||++ +++.+++||+|||++|++|+++|++++|+..+|| T Consensus 319 ~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigiL~~S~~sai~G~~~L~~~~~kk 380 (382) T PRK09560 319 KHIFAVSVLCGIGFTMSIFISSLAFGGANPEFDTYARLGILMGSTTAAVLGYFLLHISLPKK 380 (382) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999988889999999985168998677610688999999999999999999863655 No 4 >pfam06965 Na_H_antiport_1 Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyse the exchange of H+ for Na+ in a manner that is highly dependent on the pH. Probab=100.00 E-value=0 Score=966.03 Aligned_cols=367 Identities=43% Similarity=0.789 Sum_probs=354.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HH--CCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 5321557999999999999833871243334-31--124335----6769999876799999999999999998648678 Q gi|255764465|r 9 YRDNFTGILLISTTFITMILANISFSSAYYF-DA--LEYKIA----NLTLRDWVNDILMILYFFMIGLELKHELIHGELS 81 (382) Q Consensus 9 ~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~-~~--~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs 81 (382) |+|++||++|+.||++|++||||||++.|++ ++ .+.+++ ++|+|||||||||++|||+||||||||++.|||| T Consensus 1 r~E~~~GilLl~at~~Ali~ANsp~~~~Y~~~~~~~~~~~~g~~~l~~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs 80 (374) T pfam06965 1 KSESAGGILLLAAAALALIVANSPLSESYFAFLHTPFGVGVGDLGINLSLHHWINDGLMALFFLLVGLEIKRELLEGELR 80 (374) T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 97216899999999999999868629999999648243222632367729999875699999999999999764178679 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998999999877889999998982379800035045533773789999999842788899999999999875447998 Q gi|255764465|r 82 SWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIA 161 (382) Q Consensus 82 ~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIl 161 (382) |+||+++|++||+|||++||+||+.+|.++|++.+|||||||||||||+|+++++|+|+|+++|+||++|||+||+|||+ T Consensus 81 ~~r~a~lPi~AA~GGm~vPAliY~~~n~~~~~~~~GW~IP~ATDIAFAlgvlallG~rvP~~lr~FLlaLAIvDDlgaI~ 160 (374) T pfam06965 81 SPRQAALPGIAALGGMIVPALIYLLLNYGDPETVSGWAIPMATDIAFALGVLALLGSRVPASLKIFLLALAIVDDLGAIL 160 (374) T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCE T ss_conf 87888888999981440989988102258951014635444547999999999965768879999999999986211225 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 88864177666799999999999999986259861237899999999999712865678988886317678777894000 Q gi|255764465|r 162 IMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNR 241 (382) Q Consensus 162 VIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~ 241 (382) |||+|||+++++.||..+.+++.+++.+||++++++++|.++|+++|+|+|+||||||+|||++|+++|+++++.+++.+ T Consensus 161 VIA~FYt~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~~W~~~~~SGvHaTiAGV~la~~iP~~~~~~~~~~~ 240 (374) T pfam06965 161 IIALFYSEELSLAALLGAALGIAVLALLNRLGVRSLLPYLVLGVILWFAVLKSGVHATLAGVILGLLIPLKKRKGEPAAH 240 (374) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 78886189754999999999999999999749852149999999999999751441888988888404566544576558 Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 03788763420443247879998851263246764787310269999999864455899999999996175438999899 Q gi|255764465|r 242 ISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNW 321 (382) Q Consensus 242 ~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w 321 (382) +|++|+||.+||||+|+|+|+|||+||||++++.+++.++||+++||++||++|||+||++++|+++|++++++|++++| T Consensus 241 spl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lGI~lGL~vGK~lGI~~~s~lavkl~~~~lP~g~~w 320 (374) T pfam06965 241 SPLERLEHALHPWVAFAILPLFAFANAGVSLAGMTLDDLTSPLTLGIALGLVVGKPIGIFGFSWLAVKLGLAKLPEGISW 320 (374) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 98999999754237989999999850686546775353117699999999980643889999999999465779999989 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998755899999986640687257887655999999999999999999 Q gi|255764465|r 322 CLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVF 375 (382) Q Consensus 322 ~~l~~v~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l 375 (382) +|++++|+||||||||||||++|||+|+++.+|++|+|||.+|++|+++|+.+| T Consensus 321 ~~i~gv~~LaGIGFTmSLfIa~LAF~~~~~~~~~aK~gIL~aS~~aai~G~~~L 374 (374) T pfam06965 321 GQIFGVAILCGIGFTMSLFIGSLAFPGAPALIDEAKLGILIGSLVSALIGYLLL 374 (374) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999986699655563589999999999999999979 No 5 >COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Probab=100.00 E-value=0 Score=928.73 Aligned_cols=378 Identities=42% Similarity=0.782 Sum_probs=363.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 95147898532155799999999999983387124333---4311243356----7699998767999999999999999 Q gi|255764465|r 1 MTKNKFFLYRDNFTGILLISTTFITMILANISFSSAYY---FDALEYKIAN----LTLRDWVNDILMILYFFMIGLELKH 73 (382) Q Consensus 1 ~~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~---~~~~~~~~~~----~~l~~wvNDgLMaiFFf~vGLEiKr 73 (382) +++.|+|+++|+++|++|+.+|++|++.||||+++.|+ +...++++++ +|+++|||||||++||+.||||+|| T Consensus 5 ~~~~r~fl~~EaagGIlL~~~a~LAl~~aNs~ls~~Y~~fl~~pv~~~vg~~~i~~~l~~WINDgLMAvFFl~iGLEvKr 84 (390) T COG3004 5 VHLIRRFLKSEAAGGILLIIAAALALLVANSALSESYFDFLHTPVGVRVGDLSINKSLLLWINDGLMAVFFLLIGLEVKR 84 (390) T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCEECCCCHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 79999998603444389999999999980866679999998285542651555054088785106999999999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 98648678999989999998778899999989823798000350455337737899999998427888999999999998 Q gi|255764465|r 74 ELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTM 153 (382) Q Consensus 74 E~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAI 153 (382) |+.+||||++|++.+|.+||+|||++||+||..+|.++|++.+|||||||||||||+|+++++|+|+|.+||+||++||| T Consensus 85 Ell~G~L~s~~~a~~P~iAA~GGmi~PAliy~~~n~~~p~~~~GWaIP~ATDiAFALGvlaLLG~rVP~sLKiFLlaLAI 164 (390) T COG3004 85 ELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLALNAGDPATLEGWAIPMATDIAFALGVLALLGSRVPLSLKIFLLALAI 164 (390) T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 99716003704545578998616415556641032598466247676507889999999999537797059999999999 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC Q ss_conf 75447998888641776667999999999999999862598612378999999999997128656789888863176787 Q gi|255764465|r 154 IDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIK 233 (382) Q Consensus 154 vDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~ 233 (382) +||+|||+|||+|||+++|+.++..+..++.++..+||+++++..+|.+.|+++|.+++|||||+|+|||++++++|.+. T Consensus 165 ~DDLGAIvIIAlFYt~~Ls~~al~~a~~~i~vL~~lN~~~i~~l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~ 244 (390) T COG3004 165 IDDLGAIVIIALFYTTDLSMAALGIAALAIAVLAVLNRLGVRRLSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKT 244 (390) T ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC T ss_conf 83155127986400788669999999999999999988365011299999999999999722079999889970653147 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 77894000037887634204432478799988512632467647873102699999998644558999999999961754 Q gi|255764465|r 234 NYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWG 313 (382) Q Consensus 234 ~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~ 313 (382) ++ .++|+||+||.+||||+|+|+|+|||+||||++++.+.+.++||+++||++||++|||+|||+|||+++|+|++ T Consensus 245 k~----~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA 320 (390) T COG3004 245 KE----GESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLA 320 (390) T ss_pred CC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 77----88958999987531288999999987257863025554221111499999999835722103338999985011 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 389998999999999987558999999866406872578876559999999999999999994147789 Q gi|255764465|r 314 KLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK 382 (382) Q Consensus 314 ~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk 382 (382) ++|++.+|+|++++++|||||||||+||++|||++++++++.+|+|||.||.+|+++|+.++|...+|+ T Consensus 321 ~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~~~~~~~ 389 (390) T COG3004 321 KLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSEDELQTAAKLGILVGSFISAILGYSYLRLLLPRS 389 (390) T ss_pred CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 388888799999999996011989999998743872667778999999989999999999998335477 No 6 >pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Probab=99.39 E-value=2.9e-09 Score=74.27 Aligned_cols=296 Identities=19% Similarity=0.186 Sum_probs=169.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCCC--CCCEEEEECCC Q ss_conf 9998767999999999999999986486789999899999987788999999-----8982379800--03504553377 Q gi|255764465|r 52 RDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACI-----YMIINCHTEI--YLKGWAIPTAT 124 (382) Q Consensus 52 ~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pali-----y~~~n~~~~~--~~~GWaIP~AT 124 (382) .+-..|.-+.+..|..|+|++-+-.. |...-+..-++.|++.|.++ |.....+.+- ..-==++-.+| T Consensus 48 ~~~l~~lgl~~llF~~Gl~l~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ls~t 121 (371) T pfam00999 48 LEVLAELGLPFLLFLAGLELDLRELR------KNGKSILLLALLGVLLPFLLIGLLLALLGGLGIPLLEALLFGAALSAT 121 (371) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC T ss_conf 99999999999999999789999999------855799999999999999999999999998476589999999999702 Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CC--CCHHHHHHHHHHH-----H-------HHH Q ss_conf 37899999998427888999999999998754479988886417---76--6679999999999-----9-------999 Q gi|255764465|r 125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT---QS--LNLFALQVAITLI-----F-------LLF 187 (382) Q Consensus 125 DiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs---~~--i~~~~L~~a~~~~-----~-------~l~ 187 (382) |.+-...++.-. ++.+.....-+++.+++||..+++..++..+ ++ -+........... . ... T Consensus 122 s~~vv~~il~~~-~~~~~~~~~~~l~~~~~~D~~~iil~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (371) T pfam00999 122 SPVVVLAILKER-GRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLR 200 (371) T ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 288998878751-6677599999999999986999999999999971775157999999999999999999999999999 Q ss_pred HHHHCCCCC--HHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHH Q ss_conf 986259861--23789--99999999997128656789888863176787778940000378876342044324787999 Q gi|255764465|r 188 LLNRCGFTN--LFIYG--FLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAF 263 (382) Q Consensus 188 ~l~~~~v~~--~~~y~--~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlF 263 (382) ..+|...++ ..... .......+....-|.|+.++....|+.++..++ .++.++++++....+..|+| T Consensus 201 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~---------~~~~~~~~~~~~~~~~~p~f 271 (371) T pfam00999 201 LITRFTSGDRELEVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAF---------ANELSEKLEPFGYGLFLPLF 271 (371) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHHHHHHHH T ss_conf 999970465079999999999999999863362168999999999647762---------06799999999999999999 Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88512632467647873102699999998644558999999999961754389998999999999987558999999866 Q gi|255764465|r 264 VFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTL 343 (382) Q Consensus 264 AfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~ 343 (382) |...|..++-....+. -.....+....+++|++|.+..++.. +.+|++-.-++..----=++++-+++ T Consensus 272 -F~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~l~~g~~l~~rg~~~l~la~ 339 (371) T pfam00999 272 -FVLVGLSLDLSLLLSL-LLLVLLLLVAILLGKLLGVFLLARLL----------GLSLREALIVGFGGLQRGAVSLALAA 339 (371) T ss_pred -HHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf -9999987268878889-99999999999999999999999990----------99888999999999999999999999 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 406872578876559999999999999999994 Q gi|255764465|r 344 QAFPNANNLQEKAKIGIILSSVISIIYAYLVFK 376 (382) Q Consensus 344 LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~ 376 (382) .+.+.+ ...++.--.++..++++.+++-.+.| T Consensus 340 ~~~~~~-~i~~~~~~~~v~~~l~t~~i~P~l~k 371 (371) T pfam00999 340 IGLQLG-LIDRELYTLLVAVVLLTTLLKPLLKK 371 (371) T ss_pred HHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999879-99988999999999999999998629 No 7 >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Probab=99.36 E-value=1.2e-09 Score=76.65 Aligned_cols=272 Identities=21% Similarity=0.207 Sum_probs=174.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCCEEEEECCC Q ss_conf 699998767999999999999999986486789999899999987788999999898-----237980003504553377 Q gi|255764465|r 50 TLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMI-----INCHTEIYLKGWAIPTAT 124 (382) Q Consensus 50 ~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~-----~n~~~~~~~~GWaIP~AT 124 (382) +..+...|.=-.+..|.+|+|..-|-... .|+.. ....+.-+...|-..... +..+.+++.--=.+-+.| T Consensus 56 ~~i~~laelGvi~LlF~~GLE~~~~~l~~----~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~s 130 (397) T COG0475 56 EIIELLAELGVVFLLFLIGLEFDLERLKK----VGRSV-GLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALS 130 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999999999999999988079999997----42464-56788999999999999999999753548999999999983 Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC---HHHHHHHHHHHHHHHHH-------- Q ss_conf 3789999999842788899999999999875447998888641776----66---79999999999999998-------- Q gi|255764465|r 125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQS----LN---LFALQVAITLIFLLFLL-------- 189 (382) Q Consensus 125 DiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~----i~---~~~L~~a~~~~~~l~~l-------- 189 (382) .++..+-++.-.|+--.+.-+ ..+.-+++||+.++.++++...-. .+ +.++......+..+... T Consensus 131 S~~i~~~iL~e~~~~~~~~g~-~~l~~~i~~Di~~i~lLai~~~l~~~~~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~ 209 (397) T COG0475 131 STAIVLKILMELGLLKTREGQ-LILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPP 209 (397) T ss_pred HHHHHHHHHHHHCCHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999982511044589-9999999999999999999999815887307689999999999999999999999999 Q ss_pred --HHC---CCCCHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH Q ss_conf --625---9861237--899999999999712865678988886317678777894000037887634204432478799 Q gi|255764465|r 190 --NRC---GFTNLFI--YGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPA 262 (382) Q Consensus 190 --~~~---~v~~~~~--y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPl 262 (382) ++. +.+.... -+...+..=+.+..-|+|+.+..-+.|..++...++ .+++|++++|...-+-+|+ T Consensus 210 ~~r~~~~~~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~--------~~~l~~~i~~~~~~~fipl 281 (397) T COG0475 210 LFRRVAKTESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYR--------KHELEEKIEPFGDGLFIPL 281 (397) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHHHHHHHH T ss_conf 99998005750469999999999999999986866999999999987034440--------8999999996784999999 Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98851263246764787310269999999864455899999999996175438999899999999998755899999986 Q gi|255764465|r 263 FVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLT 342 (382) Q Consensus 263 FAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa 342 (382) | |.+.|..+|-..... .....+......+++|-++....++..- .+++.-.++|..---+-+.++-+. T Consensus 282 F-Fi~vG~~~dl~~l~~-~~~~~l~~~~~~i~~K~~~~~~~~~~~g----------~~~~~~~~~g~~~~~~ge~~~v~~ 349 (397) T COG0475 282 F-FISVGMSLDLGVLLE-NLLLILLLVALAILGKILGAYLAARLLG----------FSKRLALGIGLLLRQGGEFAFVLA 349 (397) T ss_pred H-HHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCHHHHHHHH T ss_conf 9-999878838988875-5999999999999999999999999975----------346679999976522148999999 Q ss_pred HHHCC Q ss_conf 64068 Q gi|255764465|r 343 LQAFP 347 (382) Q Consensus 343 ~LAF~ 347 (382) +.+.. T Consensus 350 ~~~~~ 354 (397) T COG0475 350 GIALG 354 (397) T ss_pred HHHHH T ss_conf 86201 No 8 >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Probab=98.39 E-value=0.00015 Score=45.89 Aligned_cols=263 Identities=16% Similarity=0.197 Sum_probs=140.2 Q ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHHHCCCCCCC--------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 7999999999999833---871243334311243356--------7-699998767999999999999999986486789 Q gi|255764465|r 15 GILLISTTFITMILAN---ISFSSAYYFDALEYKIAN--------L-TLRDWVNDILMILYFFMIGLELKHELIHGELSS 82 (382) Q Consensus 15 gilLl~aa~~Al~~AN---s~~~~~y~~~~~~~~~~~--------~-~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~ 82 (382) .++.+.+++++...++ .|.--.|-. .+.-+|+ - .+.+ ..|.=..+-.|.+|||++-+ +|.+ T Consensus 10 ~~i~L~aa~i~v~l~~Rl~lp~VlGYLl--aGiliGP~glglv~~~~~i~~-laElGVv~LLF~iGLE~s~~----~L~~ 82 (602) T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLL--AGIAIGPWGLGFISDVDEILH-FSELGVVFLMFIIGLELNPS----KLWQ 82 (602) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHCCCHH----HHHH T ss_conf 9999999999999999859977999999--999866352457778799999-99999999999989778999----9999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE---------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 999899999987788999999898237980003504553---------37737899999998427888999999999998 Q gi|255764465|r 83 WTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIP---------TATDIAFTLGILSWIGPNIPSSLKIFFTALTM 153 (382) Q Consensus 83 ~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP---------~ATDiAFalgvl~llg~rvp~~lrvFLlaLAI 153 (382) .|+..+. .+...|+.+.++...+... -||..+ ..+-+|..+-++.--|..-.+.-| --++..+ T Consensus 83 ~r~~v~~--~G~~qv~lt~~~~~~~~~~-----~g~~~~~al~iG~~lalSSTaIv~k~L~e~~~l~t~~G~-~~~giLl 154 (602) T PRK03659 83 LRRSIFG--VGAAQVLLSAAVLAGLLML-----TDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ-LGFSVLL 154 (602) T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHH T ss_conf 8889999--9999999999999999999-----766677899999999987699999999984200472201-1247999 Q ss_pred HHHHHHHHHHHHHC----CCCCCHHH--HHHHHHHHHHHHHHHHC------------CCCCHHHHHHHHH--HHHHHHHH Q ss_conf 75447998888641----77666799--99999999999998625------------9861237899999--99999971 Q gi|255764465|r 154 IDDFSAIAIMAIFY----TQSLNLFA--LQVAITLIFLLFLLNRC------------GFTNLFIYGFLGF--FLWHSIFK 213 (382) Q Consensus 154 vDDlgaIlVIAifY----s~~i~~~~--L~~a~~~~~~l~~l~~~------------~v~~~~~y~~~g~--~lW~~~~~ 213 (382) +||+.+|.++++.- +++-...| .......+..+....|. +.+....-..+.+ ..=+.+.. T Consensus 155 ~QDlavIplL~ll~~la~~~~~~~~~~~~~~~~~~~~~~~~~gr~l~~~l~r~va~~~~~Elf~~~~Lllvlg~A~l~~~ 234 (602) T PRK03659 155 FQDLAVIPALALVPLLAGSADEHFDWLKIGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFMDA 234 (602) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999970687653489999999999999999999999999999887077088999999999999999999 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHH-HH-HHHHHHHHH Q ss_conf 2865678988886317678777894000037887634204432478799988512632467647873-10-269999999 Q gi|255764465|r 214 SGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDI-SD-PIVWGVMLG 291 (382) Q Consensus 214 sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~-~~-pv~~gI~~g 291 (382) -|+++.++.-+.|+.+-.. ...+++|+.+.|+...+ +++| |..-|..++ +..+ .+ +...+..++ T Consensus 235 ~GLS~aLGAFlAGvlLa~s---------~~rhele~~I~Pfkdll-l~lF-FisVGm~id---~~~l~~~~~~il~~~~~ 300 (602) T PRK03659 235 LGLSMALGTFIAGVLLAES---------EYRHELEIAIDPFKGLL-LGLF-FISVGMALN---LGVLYTHLLWVLISVVV 300 (602) T ss_pred HCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHH-HHHH-HHHHHHHCC---HHHHHHHHHHHHHHHHH T ss_conf 6637999998864775178---------00899999899999999-9999-999888648---89999999999999999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 864455899999999 Q gi|255764465|r 292 LFLGKQSGIFLFAFS 306 (382) Q Consensus 292 L~iGK~lGI~~~s~l 306 (382) +++.|++-++..+++ T Consensus 301 li~vK~~v~~~l~~~ 315 (602) T PRK03659 301 LVAVKGLVLYLLARL 315 (602) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 9 >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Probab=97.98 E-value=0.0012 Score=40.61 Aligned_cols=300 Identities=16% Similarity=0.187 Sum_probs=148.9 Q ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHH-----HCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH Q ss_conf 7999999999999833---8712433343-----112433-56-769999876799999999999999998648678999 Q gi|255764465|r 15 GILLISTTFITMILAN---ISFSSAYYFD-----ALEYKI-AN-LTLRDWVNDILMILYFFMIGLELKHELIHGELSSWT 84 (382) Q Consensus 15 gilLl~aa~~Al~~AN---s~~~~~y~~~-----~~~~~~-~~-~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r 84 (382) .++++.+++++...++ .|.-=.|-.. +...+. .+ -.+.++ .|.=..+..|.+|||+.-+ +|.+.| T Consensus 9 ~~i~L~aavi~v~la~Rl~lp~VlGYLlaGiliGP~glgli~~~~~i~~~-aE~GVv~LLF~iGLEls~~----rL~~~r 83 (615) T PRK03562 9 ALIYLGAAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHF-AEIGVVLMLFVIGLELDPQ----RLWKLR 83 (615) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHCCCHH----HHHHHH T ss_conf 99999999999999999599849999999998674524466888999999-9997999999988578999----999989 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----CCCCC-CCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 98999999877889999998982----37980-00350455337737899999998427888999999999998754479 Q gi|255764465|r 85 KRSLPLLGAIGGITFPACIYMII----NCHTE-IYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSA 159 (382) Q Consensus 85 ~a~lP~~AAlGGmi~Paliy~~~----n~~~~-~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlga 159 (382) +..+-. +...++..+.+...+ +..-+ +..-|-+ -.-+-+|+++-++.--|.--.+.=| --++..+++|+.+ T Consensus 84 ~~v~~~--G~~Qvl~t~~~~~~~~~~lG~~~~~al~iG~~-lalSSTaIvl~~L~e~~~l~t~~G~-~~~giLlfQDlav 159 (615) T PRK03562 84 ASVFGG--GALQMVACGGLLGLFCMLLGLRWQVAELIGLT-LALSSTAIAMQAMNERNLMVTQMGR-SAFAVLLFQDIAA 159 (615) T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHH T ss_conf 899999--99999999999999999967878889999999-9862299999999985000484206-7888999999999 Q ss_pred HHHHHHHC---CC--CCCH--HHH--HHHHHHHHHHHHHHHCCCC------------CHHHHHHHH--HHHHHHHHHCCC Q ss_conf 98888641---77--6667--999--9999999999998625986------------123789999--999999971286 Q gi|255764465|r 160 IAIMAIFY---TQ--SLNL--FAL--QVAITLIFLLFLLNRCGFT------------NLFIYGFLG--FFLWHSIFKSGI 216 (382) Q Consensus 160 IlVIAifY---s~--~i~~--~~L--~~a~~~~~~l~~l~~~~v~------------~~~~y~~~g--~~lW~~~~~sGI 216 (382) |.++++.- ++ +... .|+ ..+.+.+..+++..|.-.+ ....-..+. +..=+.+.+.|+ T Consensus 160 IplL~llp~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~ll~~l~~~va~~~~~Elf~~~aL~lvlg~A~l~~~~GL 239 (615) T PRK03562 160 IPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGL 239 (615) T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999861577640267899999999999999999999988999999986378068999999999999999999636 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHH-HH-HHHHHHHHHHHH Q ss_conf 5678988886317678777894000037887634204432478799988512632467647873-10-269999999864 Q gi|255764465|r 217 HTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDI-SD-PIVWGVMLGLFL 294 (382) Q Consensus 217 HaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~-~~-pv~~gI~~gL~i 294 (382) ++.++..+.|+.+... ...+++|+.+.|+...+. .+| |..-|-.++ +..+ .+ ....+..+++++ T Consensus 240 S~aLGAFlAGvlLaes---------~yrh~ie~~I~Pfk~lfl-glF-FisVGm~id---~~~l~~~~~~il~l~~~l~~ 305 (615) T PRK03562 240 SMAMGAFLAGVLLASS---------EYRHALESDIEPFKGLLL-GLF-FIGVGMSID---FGTLLENPLRILILLLGFLA 305 (615) T ss_pred HHHHHHHHHCCCCCCC---------HHHHHHHHHHHHHHHHHH-HHH-HHHHHHHCC---HHHHHHHHHHHHHHHHHHHH T ss_conf 6999999843320276---------558999998898999999-999-999887538---99999879999999999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 45589999999999617543899989999999999875589999998664068 Q gi|255764465|r 295 GKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFP 347 (382) Q Consensus 295 GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~ 347 (382) +|++-+++.+... +.+|++-.-.|+.-.=|=-.|.-+...|.. T Consensus 306 ~K~~v~~~~~~~~----------g~~~~~a~~~g~~LaQ~GEFaFVl~~~a~~ 348 (615) T PRK03562 306 IKIAMLWLLARPL----------GVPRKQRRWFAVLLGQGSEFAFVVFGAAQM 348 (615) T ss_pred HHHHHHHHHHHHC----------CCCHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999999990----------887757999999871465159999998986 No 10 >KOG1650 consensus Probab=97.97 E-value=0.0012 Score=40.46 Aligned_cols=308 Identities=15% Similarity=0.138 Sum_probs=167.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCCEEEE--- Q ss_conf 35676999987679999999999999999864867899998999999877889999998--9823798000350455--- Q gi|255764465|r 46 IANLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIY--MIINCHTEIYLKGWAI--- 120 (382) Q Consensus 46 ~~~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy--~~~n~~~~~~~~GWaI--- 120 (382) ..++...+-++..-.-+|.|++|+|+......... |+ |..=+++++++|...- ...+..+.-..+.|.. T Consensus 78 ~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~---kk---a~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~ 151 (769) T KOG1650 78 KSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTG---KK---AIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFL 151 (769) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC---CE---EEEEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 50478999999999999999988520188871057---53---6999888887414543442211003322123542122 Q ss_pred --------ECCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCC-----HHHHHHHHHHHH Q ss_conf --------33773789999999842-788899999999999875447998--88864177666-----799999999999 Q gi|255764465|r 121 --------PTATDIAFTLGILSWIG-PNIPSSLKIFFTALTMIDDFSAIA--IMAIFYTQSLN-----LFALQVAITLIF 184 (382) Q Consensus 121 --------P~ATDiAFalgvl~llg-~rvp~~lrvFLlaLAIvDDlgaIl--VIAifYs~~i~-----~~~L~~a~~~~~ 184 (382) -+..=++|..-.--+-- +=....+-..-++-|++.|..++. +.++-++++.+ ..|-+....... T Consensus 152 ~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (769) T KOG1650 152 PFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFV 231 (769) T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 18888899886402149999999986211102305344446766689999999999872367776217799999999988 Q ss_pred ----------HHHHHHHC--C--CCCHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH Q ss_conf ----------99998625--9--86123789999999999---9712865678988886317678777894000037887 Q gi|255764465|r 185 ----------LLFLLNRC--G--FTNLFIYGFLGFFLWHS---IFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLL 247 (382) Q Consensus 185 ----------~l~~l~~~--~--v~~~~~y~~~g~~lW~~---~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~l 247 (382) ..|..+|. + +.+...+..+..++=.+ -.--++|+.....+.|+.+|+.++-. ..+ T Consensus 232 l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g--------~~L 303 (769) T KOG1650 232 LFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLG--------SAL 303 (769) T ss_pred HEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEECCCCCCHH--------HHH T ss_conf 636763112678875048678756643216789999999999998540052325260464268899526--------799 Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 63420443247879998851263246764787310269999999864455899999999996175438999899999999 Q gi|255764465|r 248 GDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGG 327 (382) Q Consensus 248 e~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v 327 (382) +++++..++-+.+|+|--. .|-..+-..... .-....++.--..+|-+++.+.+. ..| +.|+|-..+ T Consensus 304 ~ekle~~~~~~llPl~~~~-~G~k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~sl-~~k---------~p~~~~l~l 370 (769) T KOG1650 304 IEKLEDLVSGLLLPLYFAI-SGLKTDISRINK--WGALIRTILIFGAVKLLSTLGTSL-YCK---------LPLRDSLAL 370 (769) T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCEEHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHC---------CCHHHHHHH T ss_conf 9999887888998889654-152122898888--999999999999999999999999-965---------860688999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99875589999998664068725788765599999999999999999941477 Q gi|255764465|r 328 SILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVFKIPLR 380 (382) Q Consensus 328 ~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~ 380 (382) +.+=-.+-.+-+.+-+.+.+..-.-.+.--++++.+-+.+++.--++.....+ T Consensus 371 ~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p 423 (769) T KOG1650 371 GLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDP 423 (769) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99986554999999888873276563219999999998753299999875640 No 11 >PRK10669 putative cation:proton antiport protein; Provisional Probab=97.20 E-value=0.015 Score=33.90 Aligned_cols=261 Identities=15% Similarity=0.216 Sum_probs=141.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-------- Q ss_conf 699998767999999999999999986486789999899999987788999999898237980003504553-------- Q gi|255764465|r 50 TLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIP-------- 121 (382) Q Consensus 50 ~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP-------- 121 (382) +..+-..|.=..+-.|.+|+|++-|- |++.|+. -..++...++++.++...+.. .-||... T Consensus 55 ~~i~~laelGVv~LLF~iGLE~sl~~----L~~~~~~--~~~~g~~qv~~~~~l~~~~~~-----~lG~~~~~ai~lG~~ 123 (558) T PRK10669 55 KLAPELAELGVILLMFGVGLHFSLKD----LMAVKSI--AIPGAIAQIAVATLLGMALSA-----VLGWSLMTGIVFGLC 123 (558) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHH T ss_conf 89999999979999998786689999----9998989--999999999999999999999-----978668899999999 Q ss_pred -CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCHHHHHH--------HHHHHHH Q ss_conf -3773789999999842788899999999999875447998888641-------77666799999--------9999999 Q gi|255764465|r 122 -TATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFY-------TQSLNLFALQV--------AITLIFL 185 (382) Q Consensus 122 -~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifY-------s~~i~~~~L~~--------a~~~~~~ 185 (382) +.+-+|..+-++.--|.--.+.-| ..+...++||+.++..+++.- +++.+...+.. ..+.... T Consensus 124 la~SSTaIv~k~L~e~~~l~t~~G~-~~lgill~QDi~~v~~L~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (558) T PRK10669 124 LSTASTVVLLRALEERQLIDSQRGQ-IAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAI 202 (558) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9862599999999985112385116-788889999999999999999862123578763788999999999999999999 Q ss_pred HHHHHH------------CCCCCHHHHHHHHH---HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 999862------------59861237899999---999999712865678988886317678777894000037887634 Q gi|255764465|r 186 LFLLNR------------CGFTNLFIYGFLGF---FLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDG 250 (382) Q Consensus 186 l~~l~~------------~~v~~~~~y~~~g~---~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~ 250 (382) .++..| .+.+....-..+.+ ..|..+..-|+++.++.-+.|+.+-. ....++.|+. T Consensus 203 ~~~~gr~ll~~l~~~~a~~~~~Elf~l~~l~~~l~~a~~a~~~~GlS~~lGAFlAGl~la~---------s~~~~~i~~~ 273 (558) T PRK10669 203 MMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE---------SELSHRAAHD 273 (558) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---------CCHHHHHHHH T ss_conf 9999999999999999870782899999999999999999998374488899997688606---------8058999998 Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 204432478799988512632467647873-10-2699999998644558999999999961754389998999999999 Q gi|255764465|r 251 LKSWVMPLVLPAFVFVNTGLTISTIPYTDI-SD-PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGS 328 (382) Q Consensus 251 l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~-~~-pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~ 328 (382) +.|+...+ +++| |..-|..++ ...+ .+ +..+.....++++|++..+...... |.+|+.-.-.| T Consensus 274 i~p~rd~f-l~lF-FvsvGm~~d---~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~----------g~~~~~a~~~g 338 (558) T PRK10669 274 TLPLRDAF-AVLF-FVSVGMLFD---PLILIQQPLAVLATLAIILFGKSAAAFFLVRLF----------GHSQRTALTIA 338 (558) T ss_pred HHHHHHHH-HHHH-HHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHH T ss_conf 87299999-9999-999988628---999998899999999999999999999999981----------89877899999 Q ss_pred -HHHHHHHHHHHHHHHHHCC Q ss_conf -9875589999998664068 Q gi|255764465|r 329 -ILCGIGFTMSLFLTLQAFP 347 (382) Q Consensus 329 -~LaGIGFTmSLfIa~LAF~ 347 (382) .|+-+| -.|+-++.++.. T Consensus 339 ~~Laq~G-EFsfvl~~~a~~ 357 (558) T PRK10669 339 ASLAQIG-EFAFILAGLGMA 357 (558) T ss_pred HHHCCCC-CHHHHHHHHHHH T ss_conf 8860354-099999999998 No 12 >TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family; InterPro: IPR004771 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . The monovalent Cation:Proton antiporter-1 (CPA1) family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. This family represent the K(+)/H(+) antiporter. ; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016021 integral to membrane. Probab=96.26 E-value=0.078 Score=29.62 Aligned_cols=205 Identities=19% Similarity=0.277 Sum_probs=119.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHH-HCCCCCCCCCEEEEE-- Q ss_conf 676999987679999999999999999864867899998999999877889999---99898-237980003504553-- Q gi|255764465|r 48 NLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPA---CIYMI-INCHTEIYLKGWAIP-- 121 (382) Q Consensus 48 ~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pa---liy~~-~n~~~~~~~~GWaIP-- 121 (382) +.+.-+-..|.=--++-|.+|||+--|. |...||..++. +.=++++|. ...-. +. ..-||.-. T Consensus 56 siP~~~~laE~GV~lLmF~~GLE~d~~~----L~~~~k~~~~~--g~lq~~~~~GfG~ll~~~~~-----~~~g~~~~Ge 124 (314) T TIGR00932 56 SIPLVNHLAELGVILLMFLIGLELDLER----LKKLRKAAFGV--GVLQVLVSGGFGVLLGLLLG-----HLLGLALGGE 124 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHCCCCCCC T ss_conf 3558998988889999999887328899----99999999722--07764222678999999999-----9850357886 Q ss_pred -------CC---------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--C------------CC Q ss_conf -------37---------737899999998427888999999999998754479988886417--7------------66 Q gi|255764465|r 122 -------TA---------TDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT--Q------------SL 171 (382) Q Consensus 122 -------~A---------TDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs--~------------~i 171 (382) .| |=+|.++-+|.=.+---.+.=| --+.-+|+||+-.+...++-.. + +. T Consensus 125 RHikfsv~a~~~G~~L~~~Stav~~~~L~E~~~~~~~~G~-~~l~~l~~~D~a~v~lL~l~~~l~~~~g~~~~~~~~~~~ 203 (314) T TIGR00932 125 RHIKFSVAAVVIGIILALSSTAVVVQVLKERNLLKTREGQ-TVLGILLFQDIAVVPLLALLPLLATGSGKETVSASTEHV 203 (314) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH T ss_conf 0257889999999999999999999998650533346789-999999999999999999999856887664536410457 Q ss_pred CHHHHHHHHHHHHHHH-HH------------HHCCCCCHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHCCCCC Q ss_conf 6799999999999999-98------------6259861237899999999-----9997128656789888863176787 Q gi|255764465|r 172 NLFALQVAITLIFLLF-LL------------NRCGFTNLFIYGFLGFFLW-----HSIFKSGIHTTVFGVIMALLLPDIK 233 (382) Q Consensus 172 ~~~~L~~a~~~~~~l~-~l------------~~~~v~~~~~y~~~g~~lW-----~~~~~sGIHaTiAGV~l~~~iP~~~ 233 (382) ++..+........... +. .+.+.++...-.....+.| |.+-.-|+|+-++.-+.|..++... T Consensus 204 ~~~~~~~~~~~~~~~~~l~g~~l~~~~~~~~~~~~~~~~Se~~t~~~L~~~~g~a~~~~~~Gls~alGAF~AGv~ls~s~ 283 (314) T TIGR00932 204 ALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEARLSKDSELFTAASLLLVLGSAYLADLLGLSMALGAFLAGVLLSESE 283 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999999999998489999998622899845899999999999999998874769999989878740015 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 7789400003788763420443247879998851263246 Q gi|255764465|r 234 NYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTIS 273 (382) Q Consensus 234 ~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~ 273 (382) ...|++|++++|.-+-+-+|+| |...|-++| T Consensus 284 --------~~~~~l~~~~~p~~yg~l~plF-F~svGm~~d 314 (314) T TIGR00932 284 --------YRKHELESDIEPIGYGLLLPLF-FISVGMSLD 314 (314) T ss_pred --------HHHHHHHHHHCCCCCCEEEEHH-HEEECCCCC T ss_conf --------5788999874011450010010-023245679 No 13 >KOG1291 consensus Probab=92.13 E-value=0.74 Score=23.72 Aligned_cols=172 Identities=17% Similarity=0.225 Sum_probs=91.4 Q ss_pred CCCCHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCH Q ss_conf 37737899999---9984278889999999999987544799888864177666799999999999999986-2598612 Q gi|255764465|r 122 TATDIAFTLGI---LSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLN-RCGFTNL 197 (382) Q Consensus 122 ~ATDiAFalgv---l~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~-~~~v~~~ 197 (382) .+||++=.+|. +.++.+ +|-..-|+++.+-. .++=++|+-+++-.-...+........... ...+.++ T Consensus 116 I~sDiqEVIGTAiAlniL~~-IPL~~GVliTilD~-------f~fL~l~kyGiRklE~~~~~Li~~mai~F~~el~~~kp 187 (503) T KOG1291 116 IASDIQEVIGTAIALNILSN-IPLWAGVLITILDT-------FLFLFLDKYGIRKLEAFFAFLIVTMAISFGVELGVSKP 187 (503) T ss_pred HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECC T ss_conf 97148999999999999967-86787789999999-------99999704343999999999999999977504887448 Q ss_pred HH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC---------CCCCCCCCCC------HHHHHHHHHCCCCCHH-- Q ss_conf 37--899999999999712865678988886317678---------7778940000------3788763420443247-- Q gi|255764465|r 198 FI--YGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDI---------KNYHSPSNRI------SFYLLGDGLKSWVMPL-- 258 (382) Q Consensus 198 ~~--y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~---------~~~~~~~~~~------~~~~le~~l~p~v~~~-- 258 (382) .+ -+.-|.+-|.....++---+--|++-+..|||. +|..+++.+. .-...|+...-.++|. T Consensus 188 ~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~ial~vsF~in 267 (503) T KOG1291 188 SGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAIALFVSFSIN 267 (503) T ss_pred CCHHEEEEEECCCCCCCCCCHHHHHHHHHCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 71121451024656688871799998872535236323242244055426876664157765201089899999999999 Q ss_pred --HHHHH---HHHH------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --87999---8851------2632467647873102699999998644558999 Q gi|255764465|r 259 --VLPAF---VFVN------TGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIF 301 (382) Q Consensus 259 --IlPlF---AfaN------aGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~ 301 (382) +.-+| .|.| +|..+.+....+-.+....|..++-..|++.+.. T Consensus 268 ~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~I 321 (503) T KOG1291 268 LFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYI 321 (503) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH T ss_conf 999999988652175136662022058876102206888999887723179999 No 14 >COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Probab=88.46 E-value=1.6 Score=21.69 Aligned_cols=277 Identities=18% Similarity=0.139 Sum_probs=127.9 Q ss_pred CCHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCC--CCCC Q ss_conf 769999876-----799999999999999998648678999989999998778899999-----9898237980--0035 Q gi|255764465|r 49 LTLRDWVND-----ILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPAC-----IYMIINCHTE--IYLK 116 (382) Q Consensus 49 ~~l~~wvND-----gLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pal-----iy~~~n~~~~--~~~~ 116 (382) .+.+.|.|+ ...++=-|..|+|++++-...+-+..- .-+.+|++.-+. .|..++ +-| .+.- T Consensus 51 ~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~------~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l 123 (429) T COG0025 51 ISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSIL------VLALPLVLITALGIGLLAHWLLP-GIPLAAAFL 123 (429) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH T ss_conf 68310147799999999999999885398999987079999------99999999999999999999946-814899999 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHH-----H--------HH Q ss_conf 0455337737899999998427888999999999998754479988886417-----7666799-----9--------99 Q gi|255764465|r 117 GWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT-----QSLNLFA-----L--------QV 178 (382) Q Consensus 117 GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs-----~~i~~~~-----L--------~~ 178 (382) ==++-.+||-+-...+..= .|+|+.++..|.+-...+|--+++.-.+... +..+..+ + .. T Consensus 124 ~gAilspTDPv~v~~i~~~--~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G 201 (429) T COG0025 124 LGAILSPTDPVAVSPIFKR--VRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLG 201 (429) T ss_pred HHHHHCCCCHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 8666168828888999965--79987899999875640006899999999999845676532479999999999999999 Q ss_pred HHHHHHHHHHHHHCCCC---CHHHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC-CCCC-CCCCHHHHHHH Q ss_conf 99999999998625986---12378----9999999999971286567898888631767877-7894-00003788763 Q gi|255764465|r 179 AITLIFLLFLLNRCGFT---NLFIY----GFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKN-YHSP-SNRISFYLLGD 249 (382) Q Consensus 179 a~~~~~~l~~l~~~~v~---~~~~y----~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~-~~~~-~~~~~~~~le~ 249 (382) .+......+.+++.+.+ +.... +......+..--.-|+..-+|-|..|+..-...+ ..++ +.+...+...+ T Consensus 202 ~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe 281 (429) T COG0025 202 LLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWE 281 (429) T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999999999982334067999999999999999998747608999999989877788751342358999999999 Q ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH--HHHH Q ss_conf 42044324787999885126324676478731026999999986445589999999999617543899989999--9999 Q gi|255764465|r 250 GLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCL--LYGG 327 (382) Q Consensus 250 ~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~--l~~v 327 (382) .+.- .+---+|.+--+-++... .....=+-.+-+....++..|++++...+... .+.|+..+|++ +.+- T Consensus 282 ~l~~---~ln~~iFiLlG~~i~~~~--~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~----~~~~~~~~~~~~~~l~w 352 (429) T COG0025 282 VLDF---LLNGLLFVLLGAQLPLSL--LLALGLLGLLVALVAVLLARPLWVFLSLKGSN----LKLRDPLPWRERLFLSW 352 (429) T ss_pred HHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHH T ss_conf 9999---999999999998845889--77757999999999999999999999970121----12567788888999995 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 9987558999999866406 Q gi|255764465|r 328 SILCGIGFTMSLFLTLQAF 346 (382) Q Consensus 328 ~~LaGIGFTmSLfIa~LAF 346 (382) +-.-| ++|+..+.... T Consensus 353 ~G~RG---~vsla~al~~p 368 (429) T COG0025 353 AGPRG---VVSLALALLIP 368 (429) T ss_pred CCCCC---HHHHHHHHHHH T ss_conf 46443---99999999847 No 15 >PRK05326 potassium/proton antiporter; Reviewed Probab=84.24 E-value=2.7 Score=20.34 Aligned_cols=264 Identities=19% Similarity=0.141 Sum_probs=130.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHH-----HHHHCCCCCCCCCEEEEE Q ss_conf 6769999876799999999999999998648678999989999-9987788999999-----898237980003504553 Q gi|255764465|r 48 NLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPL-LGAIGGITFPACI-----YMIINCHTEIYLKGWAIP 121 (382) Q Consensus 48 ~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~-~AAlGGmi~Pali-----y~~~n~~~~~~~~GWaIP 121 (382) +..+.+-+-..-.++=-|-=|++.|-+- .|++.-|. .=+.-|+++-+.+ ++.+...-.+..-=-+|. T Consensus 55 ~~~la~~igs~ALaiILF~GGl~t~~~~-------~r~~~~p~~~LaTlGV~iT~~~~g~~a~~llgl~w~~alLlGAIv 127 (563) T PRK05326 55 NYPLAYLVGNLALAVILFDGGLRTRWSS-------FRPALWPALSLATLGVLITAGLTGLFAHWLLGLSWLEGLLLGAIV 127 (563) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEE T ss_conf 7799999999999999871746798899-------987766668999999999999999999999748799999883443 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCHHHH-------------HHHHHHHH Q ss_conf 37737899999998427888999999999998754479988----88641776667999-------------99999999 Q gi|255764465|r 122 TATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAI----MAIFYTQSLNLFAL-------------QVAITLIF 184 (382) Q Consensus 122 ~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlV----IAifYs~~i~~~~L-------------~~a~~~~~ 184 (382) .+||-|=...++.--+-|++..++.-|-.-...+|--|+.. +++-.+++-+.... ....+... T Consensus 128 ~sTDaAaVfslLR~~~~~lk~rl~~~Le~ESg~NDP~Av~Ltv~li~~~~~~~~~~~~~~~~~~~q~~iG~~iG~~~G~l 207 (563) T PRK05326 128 GSTDAAAVFSLLRSKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGESLSWGFLGLFLQQFGLGALIGLLGGKL 207 (563) T ss_pred ECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 04772676777742678853578989978772235799999999999984788647999999999999999999999999 Q ss_pred HHHHHHHCCCCCH--HHHHHHHHH-HH----HHHHHCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 9999862598612--378999999-99----99971286-5678988886317678777894000037887634204432 Q gi|255764465|r 185 LLFLLNRCGFTNL--FIYGFLGFF-LW----HSIFKSGI-HTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVM 256 (382) Q Consensus 185 ~l~~l~~~~v~~~--~~y~~~g~~-lW----~~~~~sGI-HaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~ 256 (382) ..+.+||.+.... .+-..++.+ += -.++.||. -.+++|+.+|= ++..+ +....+..+.+. - T Consensus 208 ~~~ll~r~~l~~~gL~pvl~la~~l~~fa~a~~l~gSGfLAVyvaGivlGN----~~~~~----~~~i~~F~egla---~ 276 (563) T PRK05326 208 LVKLLNRIALPAEGLYPILVLSGALLIFAATAALGGSGFLAVYLAGLVLGN----RPIRH----RKSILRFFDGLA---W 276 (563) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC----CCCCC----HHHHHHHHHHHH---H T ss_conf 999998466860011689999999999999998663539999999999827----77865----799999999999---9 Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 47879998851263246764787310269999999---864455899999999996175438999899999999998755 Q gi|255764465|r 257 PLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLG---LFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGI 333 (382) Q Consensus 257 ~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~g---L~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGI 333 (382) ....-+|-..-+-++.+ .+.+. ...|+.++ .++-.|+.++... +|-+.+|++-.=++-.+== T Consensus 277 L~qi~mFllLGllv~Ps--~L~~~---~~~al~lal~LifVARPlaV~lsl----------~~f~~~~rEk~fiSWvGlR 341 (563) T PRK05326 277 LAQIGMFLVLGLLVTPS--ELLPI---ALPALLLALFLIFVARPLAVFLSL----------LPFRFNLREKLFISWVGLR 341 (563) T ss_pred HHHHHHHHHHHHHHCHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHCCC T ss_conf 99999999999873999--99998---999999999999999999999996----------4799988888899886355 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999986640 Q gi|255764465|r 334 GFTMSLFLTLQA 345 (382) Q Consensus 334 GFTmSLfIa~LA 345 (382) | -+|+..|... T Consensus 342 G-aVpIvlA~~p 352 (563) T PRK05326 342 G-AVPIILATFP 352 (563) T ss_pred C-HHHHHHHHHH T ss_conf 4-0678988748 No 16 >PRK03854 mdoC glucans biosynthesis protein; Provisional Probab=78.12 E-value=4.5 Score=19.04 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=56.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----C Q ss_conf 4789853215579999999999998338712433343112433-5676999987679999999999999999864----8 Q gi|255764465|r 4 NKFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKI-ANLTLRDWVNDILMILYFFMIGLELKHELIH----G 78 (382) Q Consensus 4 ~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~~~~~~~~-~~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~----G 78 (382) -|+++.+=....++|.+--=.++...+-+ |+..-+... .--.+-.|+|.--|.+||++-|.=....+-. + T Consensus 8 R~~~LD~LR~~a~~L~I~~H~~m~y~~~~-----w~v~~~~~s~~l~~~~~~~~~wRMplfFlISG~f~~~~l~rrg~~~ 82 (374) T PRK03854 8 REYFLDSIRAWLMLLGIPFHISLIYSSHT-----WHVNSAEPSLWLTLFNDFIHAFRMQVFFVISGYFSYMLFLRYPLKR 82 (374) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 34438999999999999999611468975-----4636874207999999999988999999999999999998438999 Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 67899-9989999998778899999989823 Q gi|255764465|r 79 ELSSW-TKRSLPLLGAIGGITFPACIYMIIN 108 (382) Q Consensus 79 eLs~~-r~a~lP~~AAlGGmi~Paliy~~~n 108 (382) =+++| ++...|.+.+.= .++|...|..-. T Consensus 83 f~~~R~~RL~iPll~g~~-~i~p~q~~~~~~ 112 (374) T PRK03854 83 WWKVRVERVGIPMLTAIP-LLTLPQFIMLQY 112 (374) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH T ss_conf 999999998999999999-999999999999 No 17 >TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component; InterPro: IPR013853 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The only characterised member of this family of PTS transporters is the Escherichia coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family. It contains fewer proteins than IPR004703 from INTERPRO.. Probab=70.96 E-value=6.8 Score=17.94 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=57.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--HHCCCCCHHHHHHHHHHHC- Q ss_conf 5986123789999999999971286567898888631767877789400003788763--4204432478799988512- Q gi|255764465|r 192 CGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGD--GLKSWVMPLVLPAFVFVNT- 268 (382) Q Consensus 192 ~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~--~l~p~v~~~IlPlFAfaNa- 268 (382) ..++|.|.|.+.|.++ +.+-.|=+.+-++-|.-+.+.=.-.+=..+..+ +..+||- .=|-..+ --.|+|.+..| T Consensus 113 VDIwN~WHytftgavv-~l~tgS~i~g~~gav~haa~~lK~aDWtA~~v~-nf~eLeGisIp~G~~~-s~~P~~vLvdaI 189 (407) T TIGR00827 113 VDIWNFWHYTFTGAVV-YLVTGSLIIGLLGAVIHAALALKLADWTAKRVR-NFYELEGISIPQGSSA-SSAPLIVLVDAI 189 (407) T ss_pred EEEEHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHCCCCCCCCCCCCH-HHHHHHHHHHHH T ss_conf 4310158899999999-999889999999999999999886203130000-1006886332677522-565899999988 Q ss_pred --------CCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHH Q ss_conf --------632467647----8731026999999986445589 Q gi|255764465|r 269 --------GLTISTIPY----TDISDPIVWGVMLGLFLGKQSG 299 (382) Q Consensus 269 --------GV~l~~~~~----~~~~~pv~~gI~~gL~iGK~lG 299 (382) +.+.|.++. +-+.+|+..|+++|+.+|=--| T Consensus 190 ieKIPg~k~~n~dad~IQrrfG~fGepv~iG~vlGliiGllAG 232 (407) T TIGR00827 190 IEKIPGVKRINIDADEIQRRFGIFGEPVIIGLVLGLIIGLLAG 232 (407) T ss_pred HHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 8517875553588656755227878722788899999998727 No 18 >TIGR02660 nifV_homocitr homocitrate synthase; InterPro: IPR013477 Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation. They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by these enzymes becomes a part of the iron-molybdenum cofactor of nitrogenase.; GO: 0004410 homocitrate synthase activity, 0051188 cofactor biosynthetic process. Probab=63.85 E-value=1.3 Score=22.19 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=9.1 Q ss_pred HHHHHHCCCCHH Q ss_conf 999971286567 Q gi|255764465|r 208 WHSIFKSGIHTT 219 (382) Q Consensus 208 W~~~~~sGIHaT 219 (382) |.|-|+||||.. T Consensus 279 WVF~HESGIHVd 290 (369) T TIGR02660 279 WVFTHESGIHVD 290 (369) T ss_pred HHEECCCHHHHH T ss_conf 010001178788 No 19 >KOG4505 consensus Probab=62.43 E-value=10 Score=16.91 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=74.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEEECCCCHHHHHH Q ss_conf 9987679999999999999999864867899998999999877889999998982-379800035045533773789999 Q gi|255764465|r 53 DWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMII-NCHTEIYLKGWAIPTATDIAFTLG 131 (382) Q Consensus 53 ~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~-n~~~~~~~~GWaIP~ATDiAFalg 131 (382) .=+....+.+=-|.++.|+-|......-+|.--..+|+. +.|=.+---.+|..+ |.+..+...==+--||||--.+-- T Consensus 72 ~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVm-i~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsss 150 (467) T KOG4505 72 YEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVM-IIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSS 150 (467) T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHH T ss_conf 413456575999999985559999998899999999999-9999999989999816621788999987736886257888 Q ss_pred HHH--HHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999--842788899999999999875447998 Q gi|255764465|r 132 ILS--WIGPNIPSSLKIFFTALTMIDDFSAIA 161 (382) Q Consensus 132 vl~--llg~rvp~~lrvFLlaLAIvDDlgaIl 161 (382) +.. .+-+|+|..+|..|.+-.-.+|--||- T Consensus 151 IV~~g~~akrvPeriR~lL~AESGcNDGMaip 182 (467) T KOG4505 151 IVGGGKFAKRVPERIRNLLAAESGCNDGMAIP 182 (467) T ss_pred HHCCCHHHHHCHHHHHHHHHHHCCCCCCCCHH T ss_conf 74676476658199999998860787774136 No 20 >TIGR00831 a_cpa1 Na+/H+ antiporter; InterPro: IPR004705 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . This group is specific for the bacterial members of this family. . Probab=60.52 E-value=11 Score=16.70 Aligned_cols=248 Identities=16% Similarity=0.118 Sum_probs=121.1 Q ss_pred HHHHHHHHHHHHH-HHHHCC---CCCCC--CCEEEEECCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9987788999999-898237---98000--35045533773789999999842-78889999999999987544799888 Q gi|255764465|r 91 LGAIGGITFPACI-YMIINC---HTEIY--LKGWAIPTATDIAFTLGILSWIG-PNIPSSLKIFFTALTMIDDFSAIAIM 163 (382) Q Consensus 91 ~AAlGGmi~Pali-y~~~n~---~~~~~--~~GWaIP~ATDiAFalgvl~llg-~rvp~~lrvFLlaLAIvDDlgaIlVI 163 (382) .=|++++++-+.. =+..|| |.|-. .-==|+-.+||- .++..+++ .|+|+.+-.-|-.-++.+|--|+++. T Consensus 81 ~~a~~lVvvT~v~vgf~~~Wv~lGipl~~A~~lgAvlSpTDa---vav~g~~k~~r~Pkk~~~~l~GEsl~NDg~alV~f 157 (541) T TIGR00831 81 LLALALVVVTVVAVGFSLRWVVLGIPLALALVLGAVLSPTDA---VAVAGLVKEIRLPKKLLIVLEGESLLNDGAALVVF 157 (541) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999988998775466677667417368999999876173208---99999841344237889997222456428999999 Q ss_pred HHHCC--------------CCCCHHHHHHHHHHHHHHHHHHH-------CCCCCHHHHHH-------HHHHHHHHHHHCC Q ss_conf 86417--------------76667999999999999999862-------59861237899-------9999999997128 Q gi|255764465|r 164 AIFYT--------------QSLNLFALQVAITLIFLLFLLNR-------CGFTNLFIYGF-------LGFFLWHSIFKSG 215 (382) Q Consensus 164 AifYs--------------~~i~~~~L~~a~~~~~~l~~l~~-------~~v~~~~~y~~-------~g~~lW~~~~~sG 215 (382) ++--. -+.-..+++.+.+++.+-|+..| ++.....--+. .+.++=-.++.|| T Consensus 158 a~avava~G~~~f~p~~a~~~F~vv~~GGi~aGl~Vg~L~~RslrfllR~~iD~pl~eial~~l~pfa~fllAe~~~~SG 237 (541) T TIGR00831 158 AVAVAVALGKAVFDPAAAVVEFVVVAVGGILAGLVVGYLVTRSLRFLLRAKIDEPLVEIALLLLAPFAAFLLAERLKVSG 237 (541) T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 99999971532110578899899988889999999999999999999861367278999999999999999997808767 Q ss_pred CCHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH---HH Q ss_conf 6567898888631767877789--400003788763420443247879998851263246764787310269999---99 Q gi|255764465|r 216 IHTTVFGVIMALLLPDIKNYHS--PSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGV---ML 290 (382) Q Consensus 216 IHaTiAGV~l~~~iP~~~~~~~--~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI---~~ 290 (382) | +|-|.-|+.+-..-+.+. +..|...+...+.+.-.+|.. +-+|-=.|.-..+++...+....|-.-=- .- T Consensus 238 v---~Avvaagl~lt~~G~~~~~~~~~Rl~a~~fW~~~~Fl~Ng~-~f~l~Gvq~pg~i~~~~~e~~~~p~a~ilal~~~ 313 (541) T TIGR00831 238 V---VAVVAAGLVLTRVGRDFSISAASRLRALDFWSVLVFLVNGI-VFVLVGVQLPGIIESALKEAEVAPAAVILALAVT 313 (541) T ss_pred H---HHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 8---89999989870568730323877887976899999999889-9899860314799998776306707778999998 Q ss_pred HHHHHHHHHHHHH--HHHHHH---CCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9864455899999--999996---17543899989---999999999875589999998664068 Q gi|255764465|r 291 GLFLGKQSGIFLF--AFSTVK---IGWGKLPKDTN---WCLLYGGSILCGIGFTMSLFLTLQAFP 347 (382) Q Consensus 291 gL~iGK~lGI~~~--s~lavk---l~~~~lP~g~~---w~~l~~v~~LaGIGFTmSLfIa~LAF~ 347 (382) +.++=-.+--.=| +|..-| .-+.|.|.+++ .++..-++ -||.==-+|+ =+-|+++ T Consensus 314 ~~viy~~~~~vrfGW~~~l~~~~nR~LKK~~~~~GsWt~r~~~v~s-waG~RGai~l-A~aLs~p 376 (541) T TIGR00831 314 AVVIYAVLAYVRFGWLTVLKKFVNRVLKKKTREVGSWTFREKLVVS-WAGLRGAISL-AAALSVP 376 (541) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHH-HHHHHHC T ss_conf 9999999999986478765455411015777534527887777765-0551028999-9998400 No 21 >pfam11833 DUF3353 Protein of unknown function (DUF3353). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Probab=52.36 E-value=15 Score=15.88 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=26.6 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 99888864177666799999999999999986259861237 Q gi|255764465|r 159 AIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFI 199 (382) Q Consensus 159 aIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~ 199 (382) .+.++.+|.+.+ +-..+.+++.....+|++||++.+-..- T Consensus 102 ~L~~~~l~~~~~-~~~~l~LAls~~~~iyfl~rk~~~~~rA 141 (193) T pfam11833 102 LLALLLLLQGAE-SGPQLQLALSTGACIYFLNRKGRRFGRA 141 (193) T ss_pred HHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCCHHHHH T ss_conf 999999860688-8731899999999999888850317899 No 22 >PRK09867 hypothetical protein; Provisional Probab=51.06 E-value=16 Score=15.76 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=40.7 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 99999998625986123789999999999971286567898888631767877789400003788763420443 Q gi|255764465|r 182 LIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWV 255 (382) Q Consensus 182 ~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v 255 (382) +..+++...|+-.-+...| .-+.+|.++|.-|=|=|-|-|+.+.-+- +.-..+|++-+|+-|..+..+ T Consensus 44 ~~~~L~~tyrkf~ls~l~Y--~li~~~~~ih~iGaHYTYA~VP~g~wl~----d~fg~~RN~YDRlgHF~~Gf~ 111 (209) T PRK09867 44 VVPLLLATARRYPLTPLLY--TLIFFHAIILMVGGQYTYAKVPVGFEVQ----EWLGLSRNPYDKLGHFFQGLV 111 (209) T ss_pred HHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHCCCCCCCCCCCCHHHH----HHHCCCCCCCCHHHHHHHHHH T ss_conf 9999999986078957999--9999999999812310000388406689----985532146411688898987 No 23 >TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein; InterPro: IPR011853 In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This entry describes such transporters, found in the archaea and in bacteria.. Probab=46.83 E-value=18 Score=15.36 Aligned_cols=145 Identities=21% Similarity=0.314 Sum_probs=80.9 Q ss_pred HHHHH-HHHHHHHHHHHHHHHCCCCCCCCCEEEEE--CCCCHHHH-HHHHHHH--CCCCC-HHH---HHHHHHHHHHHH- Q ss_conf 99999-87788999999898237980003504553--37737899-9999984--27888-999---999999998754- Q gi|255764465|r 88 LPLLG-AIGGITFPACIYMIINCHTEIYLKGWAIP--TATDIAFT-LGILSWI--GPNIP-SSL---KIFFTALTMIDD- 156 (382) Q Consensus 88 lP~~A-AlGGmi~Paliy~~~n~~~~~~~~GWaIP--~ATDiAFa-lgvl~ll--g~rvp-~~l---rvFLlaLAIvDD- 156 (382) .|... =++-...=+.+|+.+|..+ -..++|++| +.||+.++ ++++-++ .||.- ..+ -...+.-+-.+| T Consensus 65 ~~~yDwll~~~a~~~~~Yl~~~y~~-l~~~~~~~~~~t~~D~v~g~l~~l~vLEa~RR~~G~~L~~l~~~f~~Y~l~g~~ 143 (681) T TIGR02123 65 VPWYDWLLALLALAAALYLPLNYLE-LLERRGGIPIFTTTDVVVGVLLILLVLEATRRTVGWALPILALVFLLYALFGPI 143 (681) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 5159999999999999979841688-998606677740699999999999999999873206999999999999630433 Q ss_pred -HHHHH-----------HHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHCCCCCHHHHHHHHHHHH-------HHHHH Q ss_conf -47998-----------88864177666799999999999999----986259861237899999999-------99971 Q gi|255764465|r 157 -FSAIA-----------IMAIFYTQSLNLFALQVAITLIFLLF----LLNRCGFTNLFIYGFLGFFLW-------HSIFK 213 (382) Q Consensus 157 -lgaIl-----------VIAifYs~~i~~~~L~~a~~~~~~l~----~l~~~~v~~~~~y~~~g~~lW-------~~~~~ 213 (382) +.+++ =--.+++|++.=.++.++..-+.... ++.|.|+-+...=+..++.-+ .++.. T Consensus 144 ~lPG~l~h~g~~~~~l~~~~~~~teG~fGtp~~vs~~~if~F~LFGafL~~~G~G~fF~D~a~a~~G~~~GGPAKvAV~s 223 (681) T TIGR02123 144 WLPGILRHRGYSLEQLITHLYLTTEGIFGTPIQVSATYIFLFILFGAFLEKSGVGKFFIDLAFALAGKRRGGPAKVAVVS 223 (681) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 47762478998899999887775013578799999999999999999999850789999999998376789950457876 Q ss_pred CCCCHHHHHHHHH-------HHCCCCC Q ss_conf 2865678988886-------3176787 Q gi|255764465|r 214 SGIHTTVFGVIMA-------LLLPDIK 233 (382) Q Consensus 214 sGIHaTiAGV~l~-------~~iP~~~ 233 (382) ||.-.|+.|=-+| ++||.=| T Consensus 224 Sal~G~~sGSsvANvVttG~fTIPlMK 250 (681) T TIGR02123 224 SALMGMISGSSVANVVTTGSFTIPLMK 250 (681) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 678877899999888852000035676 No 24 >TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PMID:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PMID:11929533). Probab=45.45 E-value=19 Score=15.23 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=16.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 766679999999999999998625 Q gi|255764465|r 169 QSLNLFALQVAITLIFLLFLLNRC 192 (382) Q Consensus 169 ~~i~~~~L~~a~~~~~~l~~l~~~ 192 (382) --+++..++.+.+.++..++++|+ T Consensus 91 Rfi~~~ml~~~~v~lv~y~~ls~w 114 (518) T TIGR03368 91 RFVNWQMLLAIFVVLVAYLLLNQW 114 (518) T ss_pred HCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 407999999999999999885421 No 25 >pfam11658 DUF3260 Protein of unknown function (DUF3260). Some members in this family of proteins are annotated as YhjU however this cannot be confirmed. Currently this family has no known function. Probab=45.15 E-value=19 Score=15.20 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 766679999999999999998625 Q gi|255764465|r 169 QSLNLFALQVAITLIFLLFLLNRC 192 (382) Q Consensus 169 ~~i~~~~L~~a~~~~~~l~~l~~~ 192 (382) --+++..++.+.+.++..++++|+ T Consensus 90 Rfi~~~ml~~~~vllv~y~~ls~w 113 (516) T pfam11658 90 RFINWQMLLALFVLLVAYLLLSRW 113 (516) T ss_pred HCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 407999999999999999986533 No 26 >pfam12046 DUF3529 Protein of unknown function (DUF3529). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length. Probab=41.72 E-value=22 Score=14.88 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=41.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 899999999999875447998888641776667999999999999999862598 Q gi|255764465|r 141 PSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGF 194 (382) Q Consensus 141 p~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v 194 (382) +..+-+||+.++.+--.|-=+|+.+.|++--.+++++..+.-++.+++.+|.+- T Consensus 79 S~~lAifLt~l~~~Gl~clgLVl~~l~P~~g~~~~~L~lLsPlAG~~Yw~kA~R 132 (173) T pfam12046 79 SRFLAVFLTLLAAVGLACLGLVLSQLVPQLGWWPLLLVLLSPLAGLYYWQRASR 132 (173) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 585999999999999999999999976885509999999732244423332787 No 27 >cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities. Probab=41.44 E-value=22 Score=14.85 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=11.3 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 6789999899999987 Q gi|255764465|r 79 ELSSWTKRSLPLLGAI 94 (382) Q Consensus 79 eLs~~r~a~lP~~AAl 94 (382) +|+.+.|..+|.+|++ T Consensus 83 ~L~~r~Kl~l~~~aal 98 (283) T cd06855 83 DLRWRHKLILPTFASL 98 (283) T ss_pred CCCHHHHHHHHHHHHH T ss_conf 2568989899999999 No 28 >COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Probab=41.32 E-value=22 Score=14.84 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=34.6 Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 7999885126324676478731026999999986445589999999999617543899989999 Q gi|255764465|r 260 LPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCL 323 (382) Q Consensus 260 lPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~ 323 (382) +|+|+|. |+. +.+++|..+.+..++...-.+-++..--++.-+-..+.|+.-||.. T Consensus 453 ~PIFtL~--GvE------GklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~ 508 (1027) T COG3696 453 LPIFTLT--GVE------GKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGILPESENPLM 508 (1027) T ss_pred HHHHHCC--CCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 0122002--534------4313407999999999999999979999999995388831116899 No 29 >pfam11922 DUF3440 Domain of unknown function (DUF3440). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with pfam01507. This domain has a conserved KND sequence motif. Probab=40.97 E-value=22 Score=14.85 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCHHHHH Q ss_conf 731026999999986445589-99999999961754389998999999 Q gi|255764465|r 279 DISDPIVWGVMLGLFLGKQSG-IFLFAFSTVKIGWGKLPKDTNWCLLY 325 (382) Q Consensus 279 ~~~~pv~~gI~~gL~iGK~lG-I~~~s~lavkl~~~~lP~g~~w~~l~ 325 (382) ...+|-+|+-+.|.|-|--.| |.+-+-. .-....++|++.+|++.. T Consensus 25 ~viePetW~kmv~RV~Ganfg~iY~~t~~-~G~~~i~lP~~~TWk~Y~ 71 (157) T pfam11922 25 HVIEPETWGKMVGRVNGVNFGAIYGGTSA-MGWRGIKLPEGHTWKSYS 71 (157) T ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCCCHH-HHHCCCCCCCCCCHHHHH T ss_conf 55187689999988714130220035400-101356799998799999 No 30 >TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316 These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process. Probab=39.53 E-value=24 Score=14.67 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=31.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH------------HCCCCCCHHHHHHHHHHH Q ss_conf 69999876799999999999999998------------648678999989999998 Q gi|255764465|r 50 TLRDWVNDILMILYFFMIGLELKHEL------------IHGELSSWTKRSLPLLGA 93 (382) Q Consensus 50 ~l~~wvNDgLMaiFFf~vGLEiKrE~------------~~GeLs~~r~a~lP~~AA 93 (382) ++.-..|..|| |=-++|||.|+.+ .+|--||+--.++|.++. T Consensus 219 ~lGSVLnhvLl--HqTViGLEaKkQlE~~Ge~PD~~~GcVGGGSNFaG~~fPf~~D 272 (426) T TIGR01415 219 SLGSVLNHVLL--HQTVIGLEAKKQLEEAGEKPDVIIGCVGGGSNFAGLAFPFVAD 272 (426) T ss_pred CCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCHHHH T ss_conf 46305666788--7667876455532410799988999733854478775011223 No 31 >COG3775 GatC Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism] Probab=39.20 E-value=24 Score=14.64 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=66.7 Q ss_pred HHHH--HHHHHHHCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CC Q ss_conf 7899--999998427888999999999998---7544799888864177666799999999999999986259-----86 Q gi|255764465|r 126 IAFT--LGILSWIGPNIPSSLKIFFTALTM---IDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCG-----FT 195 (382) Q Consensus 126 iAFa--lgvl~llg~rvp~~lrvFLlaLAI---vDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~-----v~ 195 (382) |+|. -.+..++-+...++++.|.--.-+ +-|+|-=-.=++-+.+++.+..+-....+-+.+...|+.+ .+ T Consensus 47 IgfvGig~Vi~ll~~~~~paaqamve~~ginL~v~DvGW~~~s~itWaS~ia~~~ip~~i~vNv~ML~~k~TkTldVDIw 126 (446) T COG3775 47 IGFVGIGLVIGLLTDNLGPAAQAMVERTGINLHVIDVGWPPLSTITWASPIALFFIPLIILVNVAMLVTKKTKTLDVDIW 126 (446) T ss_pred EEEEEHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHH T ss_conf 45000899999998534899999999719874876158875444002406899999999999999997412340341079 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 1237899999999999712865678988886317 Q gi|255764465|r 196 NLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLL 229 (382) Q Consensus 196 ~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~i 229 (382) +.|.|...|.++.+.. .|=+-++++-++.+... T Consensus 127 N~WH~~~tg~lv~~~t-gS~~~a~l~avi~~v~~ 159 (446) T COG3775 127 NYWHYAFTGALVYLVT-GSLIIALLAAVIHAVLV 159 (446) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH T ss_conf 8779999999999985-31999999999999999 No 32 >TIGR02831 spo_II_M stage II sporulation protein M; InterPro: IPR014196 This entry represents the stage II sporulation protein M, which is encoded in a spore formation operon . SpoIIM is one of the three genes (spoIID, spoIIM and spoIIP, , , ), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers . . Probab=38.62 E-value=25 Score=14.58 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHCCCCH-----H-HHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 589999998664068725-----7-8876-559999999999999999994147789 Q gi|255764465|r 333 IGFTMSLFLTLQAFPNAN-----N-LQEK-AKIGIILSSVISIIYAYLVFKIPLRKK 382 (382) Q Consensus 333 IGFTmSLfIa~LAF~~~~-----~-~~~~-aKlgIL~~S~~aailG~~~l~~~~~kk 382 (382) +|||++.+++++--++=- . -||- -=-++++.|.+|.-...-.+|..-.|| T Consensus 104 ~GFtvgfLv~~~G~~G~~L~~~gvlPQN~i~iP~~l~~sv~A~~FSl~~l~~~~~k~ 160 (201) T TIGR02831 104 VGFTVGFLVNQLGMKGVLLALLGVLPQNLIIIPIILIASVIAISFSLKLLRSGFVKR 160 (201) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 435599999874130999999998789999999999999999999999998656202 No 33 >TIGR01833 HMG-CoA-S_euk hydroxymethylglutaryl-CoA synthase; InterPro: IPR010122 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA . HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , . This entry is specific for eukaryotic HMG-CoA synthase enzymes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process. Probab=37.66 E-value=25 Score=14.49 Aligned_cols=43 Identities=33% Similarity=0.457 Sum_probs=31.6 Q ss_pred HHHHHHHHCCCCCCCCCE-EEEECCCCHHH-----------HHHHHHHHCCCCCH Q ss_conf 999989823798000350-45533773789-----------99999984278889 Q gi|255764465|r 100 PACIYMIINCHTEIYLKG-WAIPTATDIAF-----------TLGILSWIGPNIPS 142 (382) Q Consensus 100 Paliy~~~n~~~~~~~~G-WaIP~ATDiAF-----------algvl~llg~rvp~ 142 (382) -+.+|-++||-.+....| -||.+|+|||. |=+|.++.|+..|- T Consensus 121 TaALFNa~~WiESssWDGRyalVVagDiAvYa~G~ARPTGGAGavAmLiGp~APi 175 (461) T TIGR01833 121 TAALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAGAVAMLIGPNAPI 175 (461) T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCE T ss_conf 7999754543212675303412453211134888988752899999975689888 No 34 >pfam01350 Flavi_NS4A Flavivirus non-structural protein NS4A. Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions. NS4A has only been found in cells infected by Kunjin virus. Probab=37.13 E-value=26 Score=14.44 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=37.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH------CCCCCCCCCCC Q ss_conf 99999999999986259861237899999999999712865-67898888631------76787778940 Q gi|255764465|r 177 QVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIH-TTVFGVIMALL------LPDIKNYHSPS 239 (382) Q Consensus 177 ~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIH-aTiAGV~l~~~------iP~~~~~~~~~ 239 (382) +.....-..+++++|+++.+...=...=.+.=+++..+|+. +.+||+.+-++ +|-..+++++. T Consensus 58 l~~~T~Gv~~~lm~~kgi~rm~lG~~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS~~ 127 (145) T pfam01350 58 LGLATLGVFLLLMARKGIGRMGLGMVVLLVAGGLLWMGGVPPGKIAGVLLIFFLLLVVLIPEPGKQRSQQ 127 (145) T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC T ss_conf 9999999999876277866357999999999999984289678858999999999960446888866754 No 35 >TIGR01948 rnfE electron transport complex, RnfABCDGE type, E subunit; InterPro: IPR010968 The six-subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the E subunit.; GO: 0006118 electron transport, 0019866 organelle inner membrane. Probab=36.36 E-value=26 Score=14.42 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999986445589999999999617543899989999999999875589999998 Q gi|255764465|r 285 VWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFL 341 (382) Q Consensus 285 ~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfI 341 (382) ++||+.-|++=.-+=+-=+--.|.|=+..+ =.-=|+--|.|||.|||+ T Consensus 93 sLG~FIPLIVvNCiilGRAEAfAskn~vl~---------S~lDG~g~GlGFT~~L~v 140 (204) T TIGR01948 93 SLGIFIPLIVVNCIILGRAEAFASKNGVLP---------SILDGLGMGLGFTLVLVV 140 (204) T ss_pred HHCEECCCHHHCCHHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHH T ss_conf 310303114431011131898987157178---------899899999999999999 No 36 >PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed Probab=35.41 E-value=28 Score=14.27 Aligned_cols=32 Identities=28% Similarity=0.595 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 10269999999864455899999999996175 Q gi|255764465|r 281 SDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGW 312 (382) Q Consensus 281 ~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~ 312 (382) -+|+-.||++||+-=...|.|..+|+--|.+- T Consensus 2 iEplL~GiVLGlipvTl~GLfvaAy~QYrRg~ 33 (38) T PRK00665 2 IEPLLCGIVLGLVPVTLAGLFVAAWNQYRRGN 33 (38) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 30699778997389999999999999985056 No 37 >pfam03956 DUF340 Membrane protein of unknown function (DUF340). Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown. Probab=35.02 E-value=28 Score=14.24 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=42.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 76999987679999999999999999-8648678--9999899999987788999999898237 Q gi|255764465|r 49 LTLRDWVNDILMILYFFMIGLELKHE-LIHGELS--SWTKRSLPLLGAIGGITFPACIYMIINC 109 (382) Q Consensus 49 ~~l~~wvNDgLMaiFFf~vGLEiKrE-~~~GeLs--~~r~a~lP~~AAlGGmi~Paliy~~~n~ 109 (382) .+.++.+.+...-+.-|.||++++++ ....+++ ++|-..+|+...+|-.+.-++....++. T Consensus 19 ~~~~~~~~~~~L~~Llf~vGi~lg~~~~~~~~i~~~~~~~llip~~~i~gsl~gg~i~s~~l~~ 82 (191) T pfam03956 19 FSLSDNASTYLLYLLLFLIGIQLGNSGISLRQILKLNKKGLLIPLVTILGSLLGGLIAALILGI 82 (191) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 2210058999999999999898167853499999757138899999999999999999999489 No 38 >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm. Probab=33.06 E-value=19 Score=15.27 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=9.7 Q ss_pred HHHHHHHHHHHHHHHHHHHC Q ss_conf 99987558999999866406 Q gi|255764465|r 327 GSILCGIGFTMSLFLTLQAF 346 (382) Q Consensus 327 v~~LaGIGFTmSLfIa~LAF 346 (382) .+==+=|||||+| =.|.|- T Consensus 153 AAKAG~iGFTkAL-A~E~A~ 171 (244) T TIGR01829 153 AAKAGMIGFTKAL-AQEGAR 171 (244) T ss_pred HHHHHHHHHHHHH-HHHCCC T ss_conf 8862156777999-972110 No 39 >pfam04346 EutH Ethanolamine utilisation protein, EutH. EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm. Probab=32.69 E-value=31 Score=14.01 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=13.5 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 86640687257887655999999999999999999 Q gi|255764465|r 341 LTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVF 375 (382) Q Consensus 341 Ia~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l 375 (382) =.+|+|..+ .+.+--.-.+++-+.+++++..+- T Consensus 316 GdhLgFta~--~~p~mI~p~iigKL~~Gi~Ai~~A 348 (354) T pfam04346 316 GDHLGFTAG--FQPSMILPMIIGKLVGGITAIAVA 348 (354) T ss_pred CCCHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 651101013--784410999999999879999999 No 40 >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Probab=31.87 E-value=32 Score=13.92 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=114.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---------CCC---CCC-- Q ss_conf 676999987679999999999999999864867899998999999877889999998982---------379---800-- Q gi|255764465|r 48 NLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMII---------NCH---TEI-- 113 (382) Q Consensus 48 ~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~---------n~~---~~~-- 113 (382) +....-.+.-..|+ +|-..|.|+- -.+.||-+||+|..- -|+-.++.-.++|+.. .++ .++ T Consensus 199 P~G~~g~~~~~~~v-~Faf~GiElv-GitA~Et~dP~k~ip---kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP 273 (462) T COG1113 199 PNGFLGFLSALQIV-MFAFGGIELV-GITAAEAKDPEKAIP---KAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP 273 (462) T ss_pred CCCHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC T ss_conf 87569999999999-9998549999-999886128066778---988423299999999999998613141236878995 Q ss_pred C---CCEEEEECCCCHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 0---350455337737899---9999984278889999999999987544799888864177666799999999999999 Q gi|255764465|r 114 Y---LKGWAIPTATDIAFT---LGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLF 187 (382) Q Consensus 114 ~---~~GWaIP~ATDiAFa---lgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~ 187 (382) . -+.-+||-|.||-=. .+.++-.-+.+...-| .|-+|| +|--|=-..+-.-.+++....++.+..+..+-. T Consensus 274 FV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsR-mL~~la--~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V 350 (462) T COG1113 274 FVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSR-MLYSLA--KQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGV 350 (462) T ss_pred HHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCH-HHHHHH--HCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 89999863994203323689860002002444434305-787776--357654767640646887999999999999999 Q ss_pred HHHHCCCCCHHHHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH Q ss_conf 986259861237899-----999999999712865678988886317678777894000037887634204432478799 Q gi|255764465|r 188 LLNRCGFTNLFIYGF-----LGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPA 262 (382) Q Consensus 188 ~l~~~~v~~~~~y~~-----~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPl 262 (382) .+|+..-.+..-|+. ..+..|....-|-+- -|+.+. ++....+..-.+.||.+|+.+-. T Consensus 351 ~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~-------------~rk~~~---~~~~~~~f~m~~~p~~~~l~l~f 414 (462) T COG1113 351 VLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLK-------------LRKAKP---AEGKKLKFKMPLYPFTNYLTLAF 414 (462) T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCCH---HCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99760624399999999999999999999999999-------------986142---10557654466631788999999 Q ss_pred HHHHHCCCCCC Q ss_conf 98851263246 Q gi|255764465|r 263 FVFVNTGLTIS 273 (382) Q Consensus 263 FAfaNaGV~l~ 273 (382) +++.=.+.-++ T Consensus 415 l~~vlv~m~~~ 425 (462) T COG1113 415 LAFVLVLMLFD 425 (462) T ss_pred HHHHHHHHHCC T ss_conf 99999999748 No 41 >PRK09597 lipid A 1-phosphatase; Reviewed Probab=31.64 E-value=32 Score=13.90 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=14.9 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHH Q ss_conf 98888631767877789400003788763 Q gi|255764465|r 221 FGVIMALLLPDIKNYHSPSNRISFYLLGD 249 (382) Q Consensus 221 AGV~l~~~iP~~~~~~~~~~~~~~~~le~ 249 (382) .-.++|++.|-.+..+.|+.....+-.|| T Consensus 28 ~l~l~~~~~p~~~~~~~~~~p~a~~~~Eh 56 (190) T PRK09597 28 GLILLGIFAPFPKVPKHPSVPLAFHFTEH 56 (190) T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99998630678889899983189999999 No 42 >pfam09997 DUF2238 Predicted membrane protein (DUF2238). This domain, found in various hypothetical bacterial proteins, has no known function. Probab=31.56 E-value=32 Score=13.89 Aligned_cols=66 Identities=23% Similarity=0.020 Sum_probs=40.9 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 999998625986123789999999999971286567898888631767877789400003788763420443 Q gi|255764465|r 184 FLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWV 255 (382) Q Consensus 184 ~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v 255 (382) .++....|+-.-+...| ..+.+|.++|.-|=|=|-|-|+.+.-+- +.-..+|.+-+|+-|..+..+ T Consensus 6 ~~l~~t~rrf~ls~~~y--~li~~~~~lh~iGghYTYa~VP~~~wl~----~~fg~~RN~yDRl~HF~~Gf~ 71 (143) T pfam09997 6 PLLIWTYRRFPLSNLAY--GLIFLHLVLHMIGGHYTYAEVPYGDWLN----DLFGWERNHYDRLGHFAQGLV 71 (143) T ss_pred HHHHHHHCCCCCCHHHH--HHHHHHHHHHHHCCEEHHHCCCHHHHHH----HHHCCCCCCHHHHHHHHHHHH T ss_conf 47998853588857999--9999999999962000031088678999----985864343277999999987 No 43 >PRK03735 cytochrome b6; Provisional Probab=28.92 E-value=36 Score=13.62 Aligned_cols=138 Identities=11% Similarity=0.212 Sum_probs=73.2 Q ss_pred CCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCEE Q ss_conf 1243356--76999987679999999999999999864867899998999999877889999998-98237980003504 Q gi|255764465|r 42 LEYKIAN--LTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIY-MIINCHTEIYLKGW 118 (382) Q Consensus 42 ~~~~~~~--~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy-~~~n~~~~~~~~GW 118 (382) .+...|- -.+|+|-.+. ||+.+-+.+-|.+..|+-+.+|+..==.--.+..+..-...- ..+-++ ...-| T Consensus 75 ~ev~~GwliR~iH~~gAs~----~~~~~~lHm~R~~~~gsyk~pre~~W~~Gv~ll~l~m~~aftGY~Lpw~---q~s~w 147 (216) T PRK03735 75 NEVAFGWLIRSMHRWSASM----MVLMMILHTFRVYLTGGFKKPRELTWVVGVLIAVVTVGFGVTGYSLPWD---QVGYW 147 (216) T ss_pred HCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCH---HHHHH T ss_conf 2361199999999988999----9999999999988277534854312499999999999998504007843---35589 Q ss_pred EEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 5533773789999999842788899999999999875447998888641776667999999999999999862598612 Q gi|255764465|r 119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNL 197 (382) Q Consensus 119 aIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~ 197 (382) |.-..|.++=++-+ +| +.++.++.. ++-.+-.-+.-||+-++-..++...+....=++.++|.|..++ T Consensus 148 a~~V~t~~~~~iP~---iG----~~l~~~~~G----g~~v~~~TL~Rff~lHv~llP~~i~~l~~~Hl~~l~~~G~snP 215 (216) T PRK03735 148 AVKIVSGVPEAIPV---IG----DFIVTLLRG----GESVGQQTLTRFYSIHTFVLPWALAVFMLMHFLMIRKQGISGP 215 (216) T ss_pred HHHHHHHHHHHCCC---CC----HHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999988886160---51----899999607----8867725999999999999999999999999999965389999 No 44 >pfam09512 ThiW Thiamine-precursor transporter protein (ThiW). Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine. Probab=28.90 E-value=36 Score=13.62 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=72.2 Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 76342044324787999885126324676478731026999999986445589999999999617543899989999999 Q gi|255764465|r 247 LGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYG 326 (382) Q Consensus 247 le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~ 326 (382) .||..+-..+-+.=|-++..+|=+. +-+.+-...|-.++. -|--.|-++..++..+.|. +.-.-..++.| T Consensus 30 ~QH~iNviaaV~lGPwya~~~Af~~------sliR~~lg~Gs~lAf-pGsm~GAllaGl~yr~~k~---~~~A~lGEviG 99 (150) T pfam09512 30 VQHAINVLAAVLLGPWYALAVAFVI------SLLRNLLGTGTLLAF-PGSMFGALLAGLLYRYTRK---LYLAALGEVIG 99 (150) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHHCCCCHHHC-CCCHHHHHHHHHHHHHHCC---HHHHHHHHHHH T ss_conf 9999999999870709999999999------999999378854224-7733899999999999285---04677663766 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9998755899999986640687257887655999999999999999999414778 Q gi|255764465|r 327 GSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVFKIPLRK 381 (382) Q Consensus 327 v~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~k 381 (382) .+++++ .+|.-++.+-...+.. .--=-..=+.+|+.-+++|+++++.-+|+ T Consensus 100 TGiiGa---l~syPva~~~~g~~~~-~~~~~~~F~~St~~G~~ia~~~l~~L~k~ 150 (150) T pfam09512 100 TGIIGA---LLAYPVAPLLMGSEVA-LFFYVPPFILSSLIGSIIGYIVLVALKKT 150 (150) T ss_pred HHHHHH---HHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 589899---9999999999188305-67578899999889999999999998269 No 45 >PRK09921 permease DsdX; Provisional Probab=27.29 E-value=38 Score=13.44 Aligned_cols=50 Identities=6% Similarity=0.179 Sum_probs=30.6 Q ss_pred HHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHH Q ss_conf 99998427888999--999999998754479988886417----766679999999 Q gi|255764465|r 131 GILSWIGPNIPSSL--KIFFTALTMIDDFSAIAIMAIFYT----QSLNLFALQVAI 180 (382) Q Consensus 131 gvl~llg~rvp~~l--rvFLlaLAIvDDlgaIlVIAifYs----~~i~~~~L~~a~ 180 (382) .+....++|.|-.+ --|+...-++=|.+=++.+-+-++ .+.+...+..+. T Consensus 92 ~l~~~~~~~~~~a~~~~g~iv~IPvF~dv~fviL~Pl~~~lak~t~~s~~~~~~~l 147 (445) T PRK09921 92 TLQRCRWLSADVIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPL 147 (445) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 99996573626999999999821998873999999999999999699949999999 No 46 >PRK00523 hypothetical protein; Provisional Probab=25.66 E-value=41 Score=13.26 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH Q ss_conf 269999999864455899999999996175438999899999 Q gi|255764465|r 283 PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLL 324 (382) Q Consensus 283 pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l 324 (382) -+.+||+++|++|-.+|.|..-....|--. +-| .++-.++ T Consensus 6 ~iglgiil~li~G~~~Gff~ark~~~k~lk-~NP-PI~E~mi 45 (73) T PRK00523 6 ILGLGIPLSLIVGGIIGYFVSKKYFKKQLR-ENP-PITENQI 45 (73) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-CCCHHHH T ss_conf 659989999999999999999999999886-685-9999999 No 47 >pfam04796 RepA_C Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood. Probab=23.07 E-value=32 Score=13.86 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=41.9 Q ss_pred HHHCCCCCCCCCHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 8512632467647873-10269999999864-45589999999999617543899989999 Q gi|255764465|r 265 FVNTGLTISTIPYTDI-SDPIVWGVMLGLFL-GKQSGIFLFAFSTVKIGWGKLPKDTNWCL 323 (382) Q Consensus 265 faNaGV~l~~~~~~~~-~~pv~~gI~~gL~i-GK~lGI~~~s~lavkl~~~~lP~g~~w~~ 323 (382) +...-|.++..-+..+ .+||++-.-.=--+ |.|.-+=..+|++.|+...+.|.-+.|.| T Consensus 101 lw~s~v~LSe~Ff~~l~~hpVPlD~ralraL~~Sp~ALDiY~WLtyRl~~l~~~~~i~W~q 161 (161) T pfam04796 101 LWESTVTLSEEFFESLVDHPVPLDLRALRALNGSPLALDLYTWLTYRLHYLNRNVTITWDQ 161 (161) T ss_pred CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCCC T ss_conf 6554489789999999858887569999987078077889999999998616981167789 No 48 >pfam02529 PetG Cytochrome B6-F complex subunit 5. This family consists of cytochrome B6-F complex subunit 5 (PetG). The cytochrome bf complex found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase. PetG or subunit 5 is associated with the bf complex and the absence of PetG affects either the assembly or stability of the cytochrome bf complex in Chlamydomonas reinhardtii. Probab=20.95 E-value=50 Score=12.70 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 026999999986445589999999999617 Q gi|255764465|r 282 DPIVWGVMLGLFLGKQSGIFLFAFSTVKIG 311 (382) Q Consensus 282 ~pv~~gI~~gL~iGK~lGI~~~s~lavkl~ 311 (382) +|+--||++||+-=...|.|..+|+--|.+ T Consensus 3 Epll~GIVLGlipvTlaGLfv~Ay~QYrRg 32 (37) T pfam02529 3 EPLLSGIVLGLIPVTLAGLFVAAYLQYRRG 32 (37) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 126530201005788999999999998303 Done!