Query         gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 382
No_of_seqs    122 out of 896
Neff          4.8 
Searched_HMMs 39220
Date          Sun May 29 15:44:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764465.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK09561 nhaA pH-dependent sod 100.0       0       0  974.3  39.2  377    1-381     1-386 (388)
  2 TIGR00773 NhaA Na+/H+ antiport 100.0       0       0  983.1  28.5  369    7-375     1-415 (415)
  3 PRK09560 nhaA pH-dependent sod 100.0       0       0  972.2  37.8  377    2-382     3-380 (382)
  4 pfam06965 Na_H_antiport_1 Na+/ 100.0       0       0  966.0  35.7  367    9-375     1-374 (374)
  5 COG3004 NhaA Na+/H+ antiporter 100.0       0       0  928.7  30.2  378    1-382     5-389 (390)
  6 pfam00999 Na_H_Exchanger Sodiu  99.4 2.9E-09 7.5E-14   74.3  25.1  296   52-376    48-371 (371)
  7 COG0475 KefB Kef-type K+ trans  99.4 1.2E-09   3E-14   76.6  21.5  272   50-347    56-354 (397)
  8 PRK03659 glutathione-regulated  98.4 0.00015 3.9E-09   45.9  19.8  263   15-306    10-315 (602)
  9 PRK03562 glutathione-regulated  98.0  0.0012   3E-08   40.6  19.3  300   15-347     9-348 (615)
 10 KOG1650 consensus               98.0  0.0012 3.1E-08   40.5  18.7  308   46-380    78-423 (769)
 11 PRK10669 putative cation:proto  97.2   0.015 3.9E-07   33.9  28.9  261   50-347    55-357 (558)
 12 TIGR00932 2a37 transporter, mo  96.3   0.078   2E-06   29.6  11.6  205   48-273    56-314 (314)
 13 KOG1291 consensus               92.1    0.74 1.9E-05   23.7   6.7  172  122-301   116-321 (503)
 14 COG0025 NhaP NhaP-type Na+/H+   88.5     1.6 4.1E-05   21.7  22.3  277   49-346    51-368 (429)
 15 PRK05326 potassium/proton anti  84.2     2.7 6.9E-05   20.3  21.2  264   48-345    55-352 (563)
 16 PRK03854 mdoC glucans biosynth  78.1     4.5 0.00011   19.0   7.1   99    4-108     8-112 (374)
 17 TIGR00827 EIIC-GAT PTS system,  71.0     6.8 0.00017   17.9   4.4  105  192-299   113-232 (407)
 18 TIGR02660 nifV_homocitr homoci  63.8     1.3 3.4E-05   22.2  -0.8   12  208-219   279-290 (369)
 19 KOG4505 consensus               62.4      10 0.00026   16.9   7.3  108   53-161    72-182 (467)
 20 TIGR00831 a_cpa1 Na+/H+ antipo  60.5      11 0.00028   16.7   4.0  248   91-347    81-376 (541)
 21 pfam11833 DUF3353 Protein of u  52.4      15 0.00038   15.9   5.8   40  159-199   102-141 (193)
 22 PRK09867 hypothetical protein;  51.1      16  0.0004   15.8   4.8   68  182-255    44-111 (209)
 23 TIGR02123 TRAP_fused TRAP tran  46.8      18 0.00047   15.4   2.9  145   88-233    65-250 (681)
 24 TIGR03368 cellulose_yhjU cellu  45.5      19 0.00049   15.2   3.2   24  169-192    91-114 (518)
 25 pfam11658 DUF3260 Protein of u  45.2      19 0.00049   15.2   3.3   24  169-192    90-113 (516)
 26 pfam12046 DUF3529 Protein of u  41.7      22 0.00056   14.9   6.4   54  141-194    79-132 (173)
 27 cd06855 GT_GPT_euk UDP-GlcNAc:  41.4      22 0.00057   14.8   2.5   16   79-94     83-98  (283)
 28 COG3696 Putative silver efflux  41.3      22 0.00057   14.8   7.2   56  260-323   453-508 (1027)
 29 pfam11922 DUF3440 Domain of un  41.0      22 0.00057   14.9   2.4   46  279-325    25-71  (157)
 30 TIGR01415 trpB_rel pyridoxal-p  39.5      24 0.00061   14.7   2.7   42   50-93    219-272 (426)
 31 COG3775 GatC Phosphotransferas  39.2      24 0.00061   14.6   6.0  103  126-229    47-159 (446)
 32 TIGR02831 spo_II_M stage II sp  38.6      25 0.00063   14.6   4.9   50  333-382   104-160 (201)
 33 TIGR01833 HMG-CoA-S_euk hydrox  37.7      25 0.00065   14.5   2.3   43  100-142   121-175 (461)
 34 pfam01350 Flavi_NS4A Flaviviru  37.1      26 0.00066   14.4   7.5   63  177-239    58-127 (145)
 35 TIGR01948 rnfE electron transp  36.4      26 0.00067   14.4   2.1   48  285-341    93-140 (204)
 36 PRK00665 petG cytochrome b6-f   35.4      28 0.00071   14.3   3.8   32  281-312     2-33  (38)
 37 pfam03956 DUF340 Membrane prot  35.0      28 0.00072   14.2   4.5   61   49-109    19-82  (191)
 38 TIGR01829 AcAcCoA_reduct aceto  33.1      19 0.00048   15.3   1.0   19  327-346   153-171 (244)
 39 pfam04346 EutH Ethanolamine ut  32.7      31 0.00078   14.0   2.2   33  341-375   316-348 (354)
 40 COG1113 AnsP Gamma-aminobutyra  31.9      32 0.00081   13.9  14.9  202   48-273   199-425 (462)
 41 PRK09597 lipid A 1-phosphatase  31.6      32 0.00081   13.9   3.7   29  221-249    28-56  (190)
 42 pfam09997 DUF2238 Predicted me  31.6      32 0.00082   13.9   2.6   66  184-255     6-71  (143)
 43 PRK03735 cytochrome b6; Provis  28.9      36 0.00091   13.6   5.4  138   42-197    75-215 (216)
 44 pfam09512 ThiW Thiamine-precur  28.9      36 0.00091   13.6   7.5  121  247-381    30-150 (150)
 45 PRK09921 permease DsdX; Provis  27.3      38 0.00097   13.4   4.9   50  131-180    92-147 (445)
 46 PRK00523 hypothetical protein;  25.7      41   0.001   13.3   3.8   40  283-324     6-45  (73)
 47 pfam04796 RepA_C Plasmid encod  23.1      32 0.00083   13.9   0.7   59  265-323   101-161 (161)
 48 pfam02529 PetG Cytochrome B6-F  21.0      50  0.0013   12.7   2.9   30  282-311     3-32  (37)

No 1  
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=100.00  E-value=0  Score=974.28  Aligned_cols=377  Identities=37%  Similarity=0.708  Sum_probs=360.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--HH--CCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             951478985321557999999999999833871243334--31--124335----6769999876799999999999999
Q gi|255764465|r    1 MTKNKFFLYRDNFTGILLISTTFITMILANISFSSAYYF--DA--LEYKIA----NLTLRDWVNDILMILYFFMIGLELK   72 (382)
Q Consensus         1 ~~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~--~~--~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiK   72 (382)
                      |++.|+|+|+|++||++|+.+|++|++||||||++.||+  ++  .+.+++    ++|++||||||||++|||+||||||
T Consensus         1 ~~~l~~fl~~e~~~GilLl~at~~Ali~ANsp~~~~~y~~~~~~~~~~~~g~~~l~~~l~~wiNDgLMaiFFf~vGLEiK   80 (388)
T PRK09561          1 MKHLHRFFSSDASGGIILIIAAALAMLMANSGATSGWYHDFLETPVQLRVGALEINKNMLLWINDALMAVFFLLVGLEVK   80 (388)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             93489988433248999999999999998597136689999727202331642056649999865799999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99864867899998999999877889999998982379800035045533773789999999842788899999999999
Q gi|255764465|r   73 HELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALT  152 (382)
Q Consensus        73 rE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLA  152 (382)
                      ||++.|||||+||+++|++||+|||++||+||+.+|.++|++.+|||||||||||||+|+++++|+|+|+++|+||++||
T Consensus        81 rE~~~GeLs~~r~a~lPi~AAlGGm~vPAlIY~~~n~~~~~~~~GW~IP~ATDIAFAlgvLallg~rvP~~lrvFLlaLA  160 (388)
T PRK09561         81 RELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA  160 (388)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99873877987898878999980550989989741058854235634235205999999999955668879999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             87544799888864177666799999999999999986259861237899999999999712865678988886317678
Q gi|255764465|r  153 MIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDI  232 (382)
Q Consensus       153 IvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~  232 (382)
                      |+||+|||+|||+|||+++++.||..+.+++.+++.+||+++++.++|.++|+++|+++|+||||||+|||++|+++|.+
T Consensus       161 IvDDlgAIlVIAiFYt~~i~~~~L~~a~~~~~~l~~ln~~~v~~~~~Y~~lG~~lW~~~~~SGvHaTiAGV~la~~iP~~  240 (388)
T PRK09561        161 IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK  240 (388)
T ss_pred             HHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf             98631112466753078866999999999999999999849961479999999999999850451899989999503666


Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77789400003788763420443247879998851263246764787310269999999864455899999999996175
Q gi|255764465|r  233 KNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGW  312 (382)
Q Consensus       233 ~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~  312 (382)
                      +++    .++|.+|+||.+||||+|+|+|+|||+||||++++.+.+++++|+++||++||++|||+||++++|+++|+++
T Consensus       241 ~~~----~~sp~~rleh~l~p~v~~~ilPlFAfaNAGV~l~~~~~~~l~~~v~lGI~~GL~iGK~lGI~~~~~la~kl~~  316 (388)
T PRK09561        241 EKH----GRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKL  316 (388)
T ss_pred             CCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             556----7896999998751047889889999850475646663776417489999999981642879999999998276


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             438999899999999998755899999986640687-257887655999999999999999999414778
Q gi|255764465|r  313 GKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPN-ANNLQEKAKIGIILSSVISIIYAYLVFKIPLRK  381 (382)
Q Consensus       313 ~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~~-~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~k  381 (382)
                      +++|++++|+|++++|+||||||||||||++|||++ +++.+|++|+|||++|++|+++|+.++|++.|.
T Consensus       317 a~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aK~giL~~S~~sai~G~~~Lri~~r~  386 (388)
T PRK09561        317 AHLPEGTTYQQIMAVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSILSAVIGYSWLRVRLRP  386 (388)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7799999888999999998888999999998526899977886689999999999999999999864168


No 2  
>TIGR00773 NhaA Na+/H+ antiporter NhaA; InterPro: IPR004670   The Escherichia coli NhaA Na+:H+ Antiporter (NhaA) protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. ; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=983.12  Aligned_cols=369  Identities=40%  Similarity=0.752  Sum_probs=353.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHH---HHHCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9853215579999999999998338-7124333---431124335----6769999876799999999999999998648
Q gi|255764465|r    7 FLYRDNFTGILLISTTFITMILANI-SFSSAYY---FDALEYKIA----NLTLRDWVNDILMILYFFMIGLELKHELIHG   78 (382)
Q Consensus         7 F~~~e~~~gilLl~aa~~Al~~ANs-~~~~~y~---~~~~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~G   78 (382)
                      |++.|++|||+|++++++|++.||| +.++.|+   +++.+.+++    +++++|||||+|||+||++||||+|||+..|
T Consensus         1 Ffk~es~GGIlL~~~A~~AM~~ANsG~l~~~Y~~~l~tp~~~~ig~~~~g~~~~~WInD~LMAvFFlLiGLEvKrELl~G   80 (415)
T TIGR00773         1 FFKSESAGGILLVIAAVLAMVIANSGALSESYQDFLHTPVSLQIGSFVIGKSLLHWINDGLMAVFFLLIGLEVKRELLEG   80 (415)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95552142299999999999985462011468898608610355003344422546757899999999988998988521


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67899998999999877889999998982379800035045533773789999999842788899999999999875447
Q gi|255764465|r   79 ELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFS  158 (382)
Q Consensus        79 eLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlg  158 (382)
                      +|++.|||++|.+||+|||++||+||+.+|..||.+.+|||||||||||||+||++++|||||.+||+||+||||+||||
T Consensus        81 ~L~s~~~A~FP~IAAiGGM~~PaliY~~~n~~dP~~~~GwaIP~ATDIAFALGv~aLLgkrVP~~LKvFLlaLAiiDDLG  160 (415)
T TIGR00773        81 ALSSLKQAIFPVIAAIGGMIAPALIYLAFNANDPSAREGWAIPAATDIAFALGVLALLGKRVPLALKVFLLALAIIDDLG  160 (415)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             05532010351577763568999999997037841005766760778999999999835889736899999999985178


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99888864177666799999999999999986259861237899999999999712865678988886317678777894
Q gi|255764465|r  159 AIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSP  238 (382)
Q Consensus       159 aIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~  238 (382)
                      +|+|||+|||++++..+|..+...+.++.++||+++++..+|+++|+++|.|++|||||||+|||++||.||.|.++.+.
T Consensus       161 aiViIALFYt~~Ls~~~L~~a~~~~~VL~~LN~~~v~~l~~Y~~vG~~LW~aVlkSGvHATlAgVi~gF~IPlK~~~g~~  240 (415)
T TIGR00773       161 AIVIIALFYTSDLSVAALLVAAVAILVLALLNRLNVRKLIVYLLVGVILWFAVLKSGVHATLAGVIIGFAIPLKGKKGEK  240 (415)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             05887430036367999999999999999984542677889999999999999730178999999998632567888740


Q ss_pred             C------------------------------------CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             0------------------------------------0003788763420443247879998851263246764787310
Q gi|255764465|r  239 S------------------------------------NRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISD  282 (382)
Q Consensus       239 ~------------------------------------~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~  282 (382)
                      +                                    -++|++|+||.|||||+|.|||+||||||||+++|.+.+..+|
T Consensus       241 ~vellelGkryaetssGallske~~eilhsieekasal~sPl~~lEH~L~p~~ay~ILPLFAFANAGvSl~G~~~~~~~s  320 (415)
T TIGR00773       241 SVELLELGKRYAETSSGALLSKEQQEILHSIEEKASALQSPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSINGLTS  320 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEHHHHH
T ss_conf             36787753355432112455467789999888666775063676345550588999978888640570231203023563


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHHH
Q ss_conf             26999999986445589999999999617543899989999999999875589999998664068-7-257887655999
Q gi|255764465|r  283 PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFP-N-ANNLQEKAKIGI  360 (382)
Q Consensus       283 pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~-~-~~~~~~~aKlgI  360 (382)
                      ++.+||+.||++|||+|||.|||+++|+|++++|+|+||+|++++|+|||||||||+||++|||+ + +++..+.||+||
T Consensus       321 ~l~Lgi~~GL~~GKPlGIf~f~~~a~kL~~a~lP~Gi~f~~I~av~~LcGIGFTMS~FissLAF~a~~~~~~~~~A~lgI  400 (415)
T TIGR00773       321 MLLLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKHIFAVGVLCGIGFTMSIFISSLAFGANVDEELDTYAKLGI  400 (415)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             56799999886036146889999999712003889862888899999950047899999876316665644899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|255764465|r  361 ILSSVISIIYAYLVF  375 (382)
Q Consensus       361 L~~S~~aailG~~~l  375 (382)
                      |+||..|+++||.+|
T Consensus       401 L~GS~~sa~~Gy~~L  415 (415)
T TIGR00773       401 LLGSLISAILGYLYL  415 (415)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999998509


No 3  
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=100.00  E-value=0  Score=972.16  Aligned_cols=377  Identities=36%  Similarity=0.693  Sum_probs=363.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             51478985321557999999999999833871243334311243356769999876799999999999999998648678
Q gi|255764465|r    2 TKNKFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIANLTLRDWVNDILMILYFFMIGLELKHELIHGELS   81 (382)
Q Consensus         2 ~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~~~~~~~~~~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs   81 (382)
                      ...|+|+|+|++||++|+.+|++|++||||||++.|+.. ++..++++|++|||||+||++|||+||||||||++.||||
T Consensus         3 ~~~~~fl~~e~~~GilLl~a~~~Ali~ANs~~~~~Y~~~-~~~~~~~~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~   81 (382)
T PRK09560          3 DVIRDFFKMESAGGILLVIAAAIAMVIANSPLGEMYQAF-LHTYVFGMSVSHWINDGLMAVFFLLIGLEVKRELLEGALK   81 (382)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             699999871325799999999999999868448999999-8522036669999977899999999999999998548679


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998999999877889999998982379800035045533773789999999842788899999999999875447998
Q gi|255764465|r   82 SWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIA  161 (382)
Q Consensus        82 ~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIl  161 (382)
                      |+||+++|++||+|||++||+||+.+|+++|++.||||||||||||||+|+++++|+|+|+++|+||++|||+||+|||+
T Consensus        82 ~~~~a~lPi~AA~GGm~~PAlIY~~~n~~~~~~~~GW~IP~ATDIAFalgvlallg~rvP~~lr~FLlaLAIvDDlgaI~  161 (382)
T PRK09560         82 SKETAIFPAIAAVGGMLAPALIYVAFNFNDPEAISGWAIPAATDIAFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVV  161 (382)
T ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCE
T ss_conf             87888888999980440988888113158831026513246017999999999965768879999999999986200215


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             88864177666799999999999999986259861237899999999999712865678988886317678777894000
Q gi|255764465|r  162 IMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNR  241 (382)
Q Consensus       162 VIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~  241 (382)
                      |||+|||+++++.||..+.+++..++.+||++++++++|.++|+++|+|+|+||||||+|||++|+++|.++++.   ++
T Consensus       162 VIA~FYt~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~G~~lW~~~~~SGiHaTiAGV~la~~iP~~~~~~---~~  238 (382)
T PRK09560        162 IIALFYSSDLSTLALTVGFAMTGVLFMLNAKHVTKLSWYLIVGFILWVAVLKSGVHATLAGVVIGFAIPLKGKKG---EH  238 (382)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC---CC
T ss_conf             888750898779999999999999999985388621799999999999999705429999999995067777778---88


Q ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             03788763420443247879998851263246764787310269999999864455899999999996175438999899
Q gi|255764465|r  242 ISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNW  321 (382)
Q Consensus       242 ~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w  321 (382)
                      +|++|+||.+||||+|+|+|+|||+||||++++.+.+++++|+++||++||++|||+||++++|+++|+|++++|++++|
T Consensus       239 spl~rleh~l~p~v~~~IlPlFAfaNAGV~l~~~~~~~l~~~v~~gI~~GL~vGK~lGI~~~s~la~kl~~~~lP~g~~w  318 (382)
T PRK09560        239 SPLKHMEHALHPYVAFAILPVFAFANAGISLEGVSLSGLTSMLPLGIALGLFLGKPLGIFSFSWAAVKLGVAKLPEGVNF  318 (382)
T ss_pred             CHHHHHHHHHCCCCCEEHHHHHHHHCCCEEECCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             98999999835231032477788741561005776787636689999999983333769999999999386779999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999998755899999986640687-2578876559999999999999999994147789
Q gi|255764465|r  322 CLLYGGSILCGIGFTMSLFLTLQAFPN-ANNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK  382 (382)
Q Consensus       322 ~~l~~v~~LaGIGFTmSLfIa~LAF~~-~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk  382 (382)
                      +|++++|+||||||||||||++|||++ +++.+++||+|||++|++|+++|++++|+..+||
T Consensus       319 ~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigiL~~S~~sai~G~~~L~~~~~kk  380 (382)
T PRK09560        319 KHIFAVSVLCGIGFTMSIFISSLAFGGANPEFDTYARLGILMGSTTAAVLGYFLLHISLPKK  380 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999988889999999985168998677610688999999999999999999863655


No 4  
>pfam06965 Na_H_antiport_1 Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyse the exchange of H+ for Na+ in a manner that is highly dependent on the pH.
Probab=100.00  E-value=0  Score=966.03  Aligned_cols=367  Identities=43%  Similarity=0.789  Sum_probs=354.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HH--CCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             5321557999999999999833871243334-31--124335----6769999876799999999999999998648678
Q gi|255764465|r    9 YRDNFTGILLISTTFITMILANISFSSAYYF-DA--LEYKIA----NLTLRDWVNDILMILYFFMIGLELKHELIHGELS   81 (382)
Q Consensus         9 ~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~-~~--~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs   81 (382)
                      |+|++||++|+.||++|++||||||++.|++ ++  .+.+++    ++|+|||||||||++|||+||||||||++.||||
T Consensus         1 r~E~~~GilLl~at~~Ali~ANsp~~~~Y~~~~~~~~~~~~g~~~l~~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs   80 (374)
T pfam06965         1 KSESAGGILLLAAAALALIVANSPLSESYFAFLHTPFGVGVGDLGINLSLHHWINDGLMALFFLLVGLEIKRELLEGELR   80 (374)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             97216899999999999999868629999999648243222632367729999875699999999999999764178679


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998999999877889999998982379800035045533773789999999842788899999999999875447998
Q gi|255764465|r   82 SWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIA  161 (382)
Q Consensus        82 ~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIl  161 (382)
                      |+||+++|++||+|||++||+||+.+|.++|++.+|||||||||||||+|+++++|+|+|+++|+||++|||+||+|||+
T Consensus        81 ~~r~a~lPi~AA~GGm~vPAliY~~~n~~~~~~~~GW~IP~ATDIAFAlgvlallG~rvP~~lr~FLlaLAIvDDlgaI~  160 (374)
T pfam06965        81 SPRQAALPGIAALGGMIVPALIYLLLNYGDPETVSGWAIPMATDIAFALGVLALLGSRVPASLKIFLLALAIVDDLGAIL  160 (374)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCE
T ss_conf             87888888999981440989988102258951014635444547999999999965768879999999999986211225


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             88864177666799999999999999986259861237899999999999712865678988886317678777894000
Q gi|255764465|r  162 IMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNR  241 (382)
Q Consensus       162 VIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~  241 (382)
                      |||+|||+++++.||..+.+++.+++.+||++++++++|.++|+++|+|+|+||||||+|||++|+++|+++++.+++.+
T Consensus       161 VIA~FYt~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~~W~~~~~SGvHaTiAGV~la~~iP~~~~~~~~~~~  240 (374)
T pfam06965       161 IIALFYSEELSLAALLGAALGIAVLALLNRLGVRSLLPYLVLGVILWFAVLKSGVHATLAGVILGLLIPLKKRKGEPAAH  240 (374)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             78886189754999999999999999999749852149999999999999751441888988888404566544576558


Q ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             03788763420443247879998851263246764787310269999999864455899999999996175438999899
Q gi|255764465|r  242 ISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNW  321 (382)
Q Consensus       242 ~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w  321 (382)
                      +|++|+||.+||||+|+|+|+|||+||||++++.+++.++||+++||++||++|||+||++++|+++|++++++|++++|
T Consensus       241 spl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lGI~lGL~vGK~lGI~~~s~lavkl~~~~lP~g~~w  320 (374)
T pfam06965       241 SPLERLEHALHPWVAFAILPLFAFANAGVSLAGMTLDDLTSPLTLGIALGLVVGKPIGIFGFSWLAVKLGLAKLPEGISW  320 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             98999999754237989999999850686546775353117699999999980643889999999999465779999989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999998755899999986640687257887655999999999999999999
Q gi|255764465|r  322 CLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVF  375 (382)
Q Consensus       322 ~~l~~v~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l  375 (382)
                      +|++++|+||||||||||||++|||+|+++.+|++|+|||.+|++|+++|+.+|
T Consensus       321 ~~i~gv~~LaGIGFTmSLfIa~LAF~~~~~~~~~aK~gIL~aS~~aai~G~~~L  374 (374)
T pfam06965       321 GQIFGVAILCGIGFTMSLFIGSLAFPGAPALIDEAKLGILIGSLVSALIGYLLL  374 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999986699655563589999999999999999979


No 5  
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=928.73  Aligned_cols=378  Identities=42%  Similarity=0.782  Sum_probs=363.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             95147898532155799999999999983387124333---4311243356----7699998767999999999999999
Q gi|255764465|r    1 MTKNKFFLYRDNFTGILLISTTFITMILANISFSSAYY---FDALEYKIAN----LTLRDWVNDILMILYFFMIGLELKH   73 (382)
Q Consensus         1 ~~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~---~~~~~~~~~~----~~l~~wvNDgLMaiFFf~vGLEiKr   73 (382)
                      +++.|+|+++|+++|++|+.+|++|++.||||+++.|+   +...++++++    +|+++|||||||++||+.||||+||
T Consensus         5 ~~~~r~fl~~EaagGIlL~~~a~LAl~~aNs~ls~~Y~~fl~~pv~~~vg~~~i~~~l~~WINDgLMAvFFl~iGLEvKr   84 (390)
T COG3004           5 VHLIRRFLKSEAAGGILLIIAAALALLVANSALSESYFDFLHTPVGVRVGDLSINKSLLLWINDGLMAVFFLLIGLEVKR   84 (390)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCEECCCCHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             79999998603444389999999999980866679999998285542651555054088785106999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             98648678999989999998778899999989823798000350455337737899999998427888999999999998
Q gi|255764465|r   74 ELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTM  153 (382)
Q Consensus        74 E~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAI  153 (382)
                      |+.+||||++|++.+|.+||+|||++||+||..+|.++|++.+|||||||||||||+|+++++|+|+|.+||+||++|||
T Consensus        85 Ell~G~L~s~~~a~~P~iAA~GGmi~PAliy~~~n~~~p~~~~GWaIP~ATDiAFALGvlaLLG~rVP~sLKiFLlaLAI  164 (390)
T COG3004          85 ELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLALNAGDPATLEGWAIPMATDIAFALGVLALLGSRVPLSLKIFLLALAI  164 (390)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99716003704545578998616415556641032598466247676507889999999999537797059999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             75447998888641776667999999999999999862598612378999999999997128656789888863176787
Q gi|255764465|r  154 IDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIK  233 (382)
Q Consensus       154 vDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~  233 (382)
                      +||+|||+|||+|||+++|+.++..+..++.++..+||+++++..+|.+.|+++|.+++|||||+|+|||++++++|.+.
T Consensus       165 ~DDLGAIvIIAlFYt~~Ls~~al~~a~~~i~vL~~lN~~~i~~l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~  244 (390)
T COG3004         165 IDDLGAIVIIALFYTTDLSMAALGIAALAIAVLAVLNRLGVRRLSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKT  244 (390)
T ss_pred             HHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC
T ss_conf             83155127986400788669999999999999999988365011299999999999999722079999889970653147


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             77894000037887634204432478799988512632467647873102699999998644558999999999961754
Q gi|255764465|r  234 NYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWG  313 (382)
Q Consensus       234 ~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~  313 (382)
                      ++    .++|+||+||.+||||+|+|+|+|||+||||++++.+.+.++||+++||++||++|||+|||+|||+++|+|++
T Consensus       245 k~----~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA  320 (390)
T COG3004         245 KE----GESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLA  320 (390)
T ss_pred             CC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             77----88958999987531288999999987257863025554221111499999999835722103338999985011


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             389998999999999987558999999866406872578876559999999999999999994147789
Q gi|255764465|r  314 KLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK  382 (382)
Q Consensus       314 ~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk  382 (382)
                      ++|++.+|+|++++++|||||||||+||++|||++++++++.+|+|||.||.+|+++|+.++|...+|+
T Consensus       321 ~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~~~~~~~  389 (390)
T COG3004         321 KLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSEDELQTAAKLGILVGSFISAILGYSYLRLLLPRS  389 (390)
T ss_pred             CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             388888799999999996011989999998743872667778999999989999999999998335477


No 6  
>pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
Probab=99.39  E-value=2.9e-09  Score=74.27  Aligned_cols=296  Identities=19%  Similarity=0.186  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCCC--CCCEEEEECCC
Q ss_conf             9998767999999999999999986486789999899999987788999999-----8982379800--03504553377
Q gi|255764465|r   52 RDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACI-----YMIINCHTEI--YLKGWAIPTAT  124 (382)
Q Consensus        52 ~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pali-----y~~~n~~~~~--~~~GWaIP~AT  124 (382)
                      .+-..|.-+.+..|..|+|++-+-..      |...-+..-++.|++.|.++     |.....+.+-  ..-==++-.+|
T Consensus        48 ~~~l~~lgl~~llF~~Gl~l~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ls~t  121 (371)
T pfam00999        48 LEVLAELGLPFLLFLAGLELDLRELR------KNGKSILLLALLGVLLPFLLIGLLLALLGGLGIPLLEALLFGAALSAT  121 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             99999999999999999789999999------855799999999999999999999999998476589999999999702


Q ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CC--CCHHHHHHHHHHH-----H-------HHH
Q ss_conf             37899999998427888999999999998754479988886417---76--6679999999999-----9-------999
Q gi|255764465|r  125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT---QS--LNLFALQVAITLI-----F-------LLF  187 (382)
Q Consensus       125 DiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs---~~--i~~~~L~~a~~~~-----~-------~l~  187 (382)
                      |.+-...++.-. ++.+.....-+++.+++||..+++..++..+   ++  -+...........     .       ...
T Consensus       122 s~~vv~~il~~~-~~~~~~~~~~~l~~~~~~D~~~iil~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T pfam00999       122 SPVVVLAILKER-GRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLR  200 (371)
T ss_pred             CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             288998878751-6677599999999999986999999999999971775157999999999999999999999999999


Q ss_pred             HHHHCCCCC--HHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             986259861--23789--99999999997128656789888863176787778940000378876342044324787999
Q gi|255764465|r  188 LLNRCGFTN--LFIYG--FLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAF  263 (382)
Q Consensus       188 ~l~~~~v~~--~~~y~--~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlF  263 (382)
                      ..+|...++  .....  .......+....-|.|+.++....|+.++..++         .++.++++++....+..|+|
T Consensus       201 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~---------~~~~~~~~~~~~~~~~~p~f  271 (371)
T pfam00999       201 LITRFTSGDRELEVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAF---------ANELSEKLEPFGYGLFLPLF  271 (371)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHHHHHHHH
T ss_conf             999970465079999999999999999863362168999999999647762---------06799999999999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88512632467647873102699999998644558999999999961754389998999999999987558999999866
Q gi|255764465|r  264 VFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTL  343 (382)
Q Consensus       264 AfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~  343 (382)
                       |...|..++-....+. -.....+....+++|++|.+..++..          +.+|++-.-++..----=++++-+++
T Consensus       272 -F~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~l~~g~~l~~rg~~~l~la~  339 (371)
T pfam00999       272 -FVLVGLSLDLSLLLSL-LLLVLLLLVAILLGKLLGVFLLARLL----------GLSLREALIVGFGGLQRGAVSLALAA  339 (371)
T ss_pred             -HHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -9999987268878889-99999999999999999999999990----------99888999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             406872578876559999999999999999994
Q gi|255764465|r  344 QAFPNANNLQEKAKIGIILSSVISIIYAYLVFK  376 (382)
Q Consensus       344 LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~  376 (382)
                      .+.+.+ ...++.--.++..++++.+++-.+.|
T Consensus       340 ~~~~~~-~i~~~~~~~~v~~~l~t~~i~P~l~k  371 (371)
T pfam00999       340 IGLQLG-LIDRELYTLLVAVVLLTTLLKPLLKK  371 (371)
T ss_pred             HHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999879-99988999999999999999998629


No 7  
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.36  E-value=1.2e-09  Score=76.65  Aligned_cols=272  Identities=21%  Similarity=0.207  Sum_probs=174.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCCEEEEECCC
Q ss_conf             699998767999999999999999986486789999899999987788999999898-----237980003504553377
Q gi|255764465|r   50 TLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMI-----INCHTEIYLKGWAIPTAT  124 (382)
Q Consensus        50 ~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~-----~n~~~~~~~~GWaIP~AT  124 (382)
                      +..+...|.=-.+..|.+|+|..-|-...    .|+.. ....+.-+...|-.....     +..+.+++.--=.+-+.|
T Consensus        56 ~~i~~laelGvi~LlF~~GLE~~~~~l~~----~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~s  130 (397)
T COG0475          56 EIIELLAELGVVFLLFLIGLEFDLERLKK----VGRSV-GLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALS  130 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999988079999997----42464-56788999999999999999999753548999999999983


Q ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC---HHHHHHHHHHHHHHHHH--------
Q ss_conf             3789999999842788899999999999875447998888641776----66---79999999999999998--------
Q gi|255764465|r  125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQS----LN---LFALQVAITLIFLLFLL--------  189 (382)
Q Consensus       125 DiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~----i~---~~~L~~a~~~~~~l~~l--------  189 (382)
                      .++..+-++.-.|+--.+.-+ ..+.-+++||+.++.++++...-.    .+   +.++......+..+...        
T Consensus       131 S~~i~~~iL~e~~~~~~~~g~-~~l~~~i~~Di~~i~lLai~~~l~~~~~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~  209 (397)
T COG0475         131 STAIVLKILMELGLLKTREGQ-LILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPP  209 (397)
T ss_pred             HHHHHHHHHHHHCCHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999982511044589-9999999999999999999999815887307689999999999999999999999999


Q ss_pred             --HHC---CCCCHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf             --625---9861237--899999999999712865678988886317678777894000037887634204432478799
Q gi|255764465|r  190 --NRC---GFTNLFI--YGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPA  262 (382)
Q Consensus       190 --~~~---~v~~~~~--y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPl  262 (382)
                        ++.   +.+....  -+...+..=+.+..-|+|+.+..-+.|..++...++        .+++|++++|...-+-+|+
T Consensus       210 ~~r~~~~~~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~--------~~~l~~~i~~~~~~~fipl  281 (397)
T COG0475         210 LFRRVAKTESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYR--------KHELEEKIEPFGDGLFIPL  281 (397)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHHHHHHHH
T ss_conf             99998005750469999999999999999986866999999999987034440--------8999999996784999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98851263246764787310269999999864455899999999996175438999899999999998755899999986
Q gi|255764465|r  263 FVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLT  342 (382)
Q Consensus       263 FAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa  342 (382)
                      | |.+.|..+|-..... .....+......+++|-++....++..-          .+++.-.++|..---+-+.++-+.
T Consensus       282 F-Fi~vG~~~dl~~l~~-~~~~~l~~~~~~i~~K~~~~~~~~~~~g----------~~~~~~~~~g~~~~~~ge~~~v~~  349 (397)
T COG0475         282 F-FISVGMSLDLGVLLE-NLLLILLLVALAILGKILGAYLAARLLG----------FSKRLALGIGLLLRQGGEFAFVLA  349 (397)
T ss_pred             H-HHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             9-999878838988875-5999999999999999999999999975----------346679999976522148999999


Q ss_pred             HHHCC
Q ss_conf             64068
Q gi|255764465|r  343 LQAFP  347 (382)
Q Consensus       343 ~LAF~  347 (382)
                      +.+..
T Consensus       350 ~~~~~  354 (397)
T COG0475         350 GIALG  354 (397)
T ss_pred             HHHHH
T ss_conf             86201


No 8  
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.39  E-value=0.00015  Score=45.89  Aligned_cols=263  Identities=16%  Similarity=0.197  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHC---CCHHHHHHHHHCCCCCCC--------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             7999999999999833---871243334311243356--------7-699998767999999999999999986486789
Q gi|255764465|r   15 GILLISTTFITMILAN---ISFSSAYYFDALEYKIAN--------L-TLRDWVNDILMILYFFMIGLELKHELIHGELSS   82 (382)
Q Consensus        15 gilLl~aa~~Al~~AN---s~~~~~y~~~~~~~~~~~--------~-~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~   82 (382)
                      .++.+.+++++...++   .|.--.|-.  .+.-+|+        - .+.+ ..|.=..+-.|.+|||++-+    +|.+
T Consensus        10 ~~i~L~aa~i~v~l~~Rl~lp~VlGYLl--aGiliGP~glglv~~~~~i~~-laElGVv~LLF~iGLE~s~~----~L~~   82 (602)
T PRK03659         10 GVLFLFAAVVAVPLAQRLGIGAVLGYLL--AGIAIGPWGLGFISDVDEILH-FSELGVVFLMFIIGLELNPS----KLWQ   82 (602)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHCCCHH----HHHH
T ss_conf             9999999999999999859977999999--999866352457778799999-99999999999989778999----9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE---------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             999899999987788999999898237980003504553---------37737899999998427888999999999998
Q gi|255764465|r   83 WTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIP---------TATDIAFTLGILSWIGPNIPSSLKIFFTALTM  153 (382)
Q Consensus        83 ~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP---------~ATDiAFalgvl~llg~rvp~~lrvFLlaLAI  153 (382)
                      .|+..+.  .+...|+.+.++...+...     -||..+         ..+-+|..+-++.--|..-.+.-| --++..+
T Consensus        83 ~r~~v~~--~G~~qv~lt~~~~~~~~~~-----~g~~~~~al~iG~~lalSSTaIv~k~L~e~~~l~t~~G~-~~~giLl  154 (602)
T PRK03659         83 LRRSIFG--VGAAQVLLSAAVLAGLLML-----TDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ-LGFSVLL  154 (602)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHH
T ss_conf             8889999--9999999999999999999-----766677899999999987699999999984200472201-1247999


Q ss_pred             HHHHHHHHHHHHHC----CCCCCHHH--HHHHHHHHHHHHHHHHC------------CCCCHHHHHHHHH--HHHHHHHH
Q ss_conf             75447998888641----77666799--99999999999998625------------9861237899999--99999971
Q gi|255764465|r  154 IDDFSAIAIMAIFY----TQSLNLFA--LQVAITLIFLLFLLNRC------------GFTNLFIYGFLGF--FLWHSIFK  213 (382)
Q Consensus       154 vDDlgaIlVIAifY----s~~i~~~~--L~~a~~~~~~l~~l~~~------------~v~~~~~y~~~g~--~lW~~~~~  213 (382)
                      +||+.+|.++++.-    +++-...|  .......+..+....|.            +.+....-..+.+  ..=+.+..
T Consensus       155 ~QDlavIplL~ll~~la~~~~~~~~~~~~~~~~~~~~~~~~~gr~l~~~l~r~va~~~~~Elf~~~~Lllvlg~A~l~~~  234 (602)
T PRK03659        155 FQDLAVIPALALVPLLAGSADEHFDWLKIGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFMDA  234 (602)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999970687653489999999999999999999999999999887077088999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHH-HH-HHHHHHHHH
Q ss_conf             2865678988886317678777894000037887634204432478799988512632467647873-10-269999999
Q gi|255764465|r  214 SGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDI-SD-PIVWGVMLG  291 (382)
Q Consensus       214 sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~-~~-pv~~gI~~g  291 (382)
                      -|+++.++.-+.|+.+-..         ...+++|+.+.|+...+ +++| |..-|..++   +..+ .+ +...+..++
T Consensus       235 ~GLS~aLGAFlAGvlLa~s---------~~rhele~~I~Pfkdll-l~lF-FisVGm~id---~~~l~~~~~~il~~~~~  300 (602)
T PRK03659        235 LGLSMALGTFIAGVLLAES---------EYRHELEIAIDPFKGLL-LGLF-FISVGMALN---LGVLYTHLLWVLISVVV  300 (602)
T ss_pred             HCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHH-HHHH-HHHHHHHCC---HHHHHHHHHHHHHHHHH
T ss_conf             6637999998864775178---------00899999899999999-9999-999888648---89999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             864455899999999
Q gi|255764465|r  292 LFLGKQSGIFLFAFS  306 (382)
Q Consensus       292 L~iGK~lGI~~~s~l  306 (382)
                      +++.|++-++..+++
T Consensus       301 li~vK~~v~~~l~~~  315 (602)
T PRK03659        301 LVAVKGLVLYLLARL  315 (602)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 9  
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.98  E-value=0.0012  Score=40.61  Aligned_cols=300  Identities=16%  Similarity=0.187  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHHC---CCHHHHHHHH-----HCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             7999999999999833---8712433343-----112433-56-769999876799999999999999998648678999
Q gi|255764465|r   15 GILLISTTFITMILAN---ISFSSAYYFD-----ALEYKI-AN-LTLRDWVNDILMILYFFMIGLELKHELIHGELSSWT   84 (382)
Q Consensus        15 gilLl~aa~~Al~~AN---s~~~~~y~~~-----~~~~~~-~~-~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r   84 (382)
                      .++++.+++++...++   .|.-=.|-..     +...+. .+ -.+.++ .|.=..+..|.+|||+.-+    +|.+.|
T Consensus         9 ~~i~L~aavi~v~la~Rl~lp~VlGYLlaGiliGP~glgli~~~~~i~~~-aE~GVv~LLF~iGLEls~~----rL~~~r   83 (615)
T PRK03562          9 ALIYLGAAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHF-AEIGVVLMLFVIGLELDPQ----RLWKLR   83 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHCCCHH----HHHHHH
T ss_conf             99999999999999999599849999999998674524466888999999-9997999999988578999----999989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----CCCCC-CCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             98999999877889999998982----37980-00350455337737899999998427888999999999998754479
Q gi|255764465|r   85 KRSLPLLGAIGGITFPACIYMII----NCHTE-IYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSA  159 (382)
Q Consensus        85 ~a~lP~~AAlGGmi~Paliy~~~----n~~~~-~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlga  159 (382)
                      +..+-.  +...++..+.+...+    +..-+ +..-|-+ -.-+-+|+++-++.--|.--.+.=| --++..+++|+.+
T Consensus        84 ~~v~~~--G~~Qvl~t~~~~~~~~~~lG~~~~~al~iG~~-lalSSTaIvl~~L~e~~~l~t~~G~-~~~giLlfQDlav  159 (615)
T PRK03562         84 ASVFGG--GALQMVACGGLLGLFCMLLGLRWQVAELIGLT-LALSSTAIAMQAMNERNLMVTQMGR-SAFAVLLFQDIAA  159 (615)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHH
T ss_conf             899999--99999999999999999967878889999999-9862299999999985000484206-7888999999999


Q ss_pred             HHHHHHHC---CC--CCCH--HHH--HHHHHHHHHHHHHHHCCCC------------CHHHHHHHH--HHHHHHHHHCCC
Q ss_conf             98888641---77--6667--999--9999999999998625986------------123789999--999999971286
Q gi|255764465|r  160 IAIMAIFY---TQ--SLNL--FAL--QVAITLIFLLFLLNRCGFT------------NLFIYGFLG--FFLWHSIFKSGI  216 (382)
Q Consensus       160 IlVIAifY---s~--~i~~--~~L--~~a~~~~~~l~~l~~~~v~------------~~~~y~~~g--~~lW~~~~~sGI  216 (382)
                      |.++++.-   ++  +...  .|+  ..+.+.+..+++..|.-.+            ....-..+.  +..=+.+.+.|+
T Consensus       160 IplL~llp~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~ll~~l~~~va~~~~~Elf~~~aL~lvlg~A~l~~~~GL  239 (615)
T PRK03562        160 IPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGL  239 (615)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999861577640267899999999999999999999988999999986378068999999999999999999636


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHH-HH-HHHHHHHHHHHH
Q ss_conf             5678988886317678777894000037887634204432478799988512632467647873-10-269999999864
Q gi|255764465|r  217 HTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDI-SD-PIVWGVMLGLFL  294 (382)
Q Consensus       217 HaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~-~~-pv~~gI~~gL~i  294 (382)
                      ++.++..+.|+.+...         ...+++|+.+.|+...+. .+| |..-|-.++   +..+ .+ ....+..+++++
T Consensus       240 S~aLGAFlAGvlLaes---------~yrh~ie~~I~Pfk~lfl-glF-FisVGm~id---~~~l~~~~~~il~l~~~l~~  305 (615)
T PRK03562        240 SMAMGAFLAGVLLASS---------EYRHALESDIEPFKGLLL-GLF-FIGVGMSID---FGTLLENPLRILILLLGFLA  305 (615)
T ss_pred             HHHHHHHHHCCCCCCC---------HHHHHHHHHHHHHHHHHH-HHH-HHHHHHHCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf             6999999843320276---------558999998898999999-999-999887538---99999879999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             45589999999999617543899989999999999875589999998664068
Q gi|255764465|r  295 GKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFP  347 (382)
Q Consensus       295 GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~  347 (382)
                      +|++-+++.+...          +.+|++-.-.|+.-.=|=-.|.-+...|..
T Consensus       306 ~K~~v~~~~~~~~----------g~~~~~a~~~g~~LaQ~GEFaFVl~~~a~~  348 (615)
T PRK03562        306 IKIAMLWLLARPL----------GVPRKQRRWFAVLLGQGSEFAFVVFGAAQM  348 (615)
T ss_pred             HHHHHHHHHHHHC----------CCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999999999990----------887757999999871465159999998986


No 10 
>KOG1650 consensus
Probab=97.97  E-value=0.0012  Score=40.46  Aligned_cols=308  Identities=15%  Similarity=0.138  Sum_probs=167.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCCEEEE---
Q ss_conf             35676999987679999999999999999864867899998999999877889999998--9823798000350455---
Q gi|255764465|r   46 IANLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIY--MIINCHTEIYLKGWAI---  120 (382)
Q Consensus        46 ~~~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy--~~~n~~~~~~~~GWaI---  120 (382)
                      ..++...+-++..-.-+|.|++|+|+.........   |+   |..=+++++++|...-  ...+..+.-..+.|..   
T Consensus        78 ~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~---kk---a~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~  151 (769)
T KOG1650          78 KSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTG---KK---AIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFL  151 (769)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC---CE---EEEEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             50478999999999999999988520188871057---53---6999888887414543442211003322123542122


Q ss_pred             --------ECCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCC-----HHHHHHHHHHHH
Q ss_conf             --------33773789999999842-788899999999999875447998--88864177666-----799999999999
Q gi|255764465|r  121 --------PTATDIAFTLGILSWIG-PNIPSSLKIFFTALTMIDDFSAIA--IMAIFYTQSLN-----LFALQVAITLIF  184 (382)
Q Consensus       121 --------P~ATDiAFalgvl~llg-~rvp~~lrvFLlaLAIvDDlgaIl--VIAifYs~~i~-----~~~L~~a~~~~~  184 (382)
                              -+..=++|..-.--+-- +=....+-..-++-|++.|..++.  +.++-++++.+     ..|-+.......
T Consensus       152 ~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (769)
T KOG1650         152 PFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFV  231 (769)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             18888899886402149999999986211102305344446766689999999999872367776217799999999988


Q ss_pred             ----------HHHHHHHC--C--CCCHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             ----------99998625--9--86123789999999999---9712865678988886317678777894000037887
Q gi|255764465|r  185 ----------LLFLLNRC--G--FTNLFIYGFLGFFLWHS---IFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLL  247 (382)
Q Consensus       185 ----------~l~~l~~~--~--v~~~~~y~~~g~~lW~~---~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~l  247 (382)
                                ..|..+|.  +  +.+...+..+..++=.+   -.--++|+.....+.|+.+|+.++-.        ..+
T Consensus       232 l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g--------~~L  303 (769)
T KOG1650         232 LFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLG--------SAL  303 (769)
T ss_pred             HEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEECCCCCCHH--------HHH
T ss_conf             636763112678875048678756643216789999999999998540052325260464268899526--------799


Q ss_pred             HHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             63420443247879998851263246764787310269999999864455899999999996175438999899999999
Q gi|255764465|r  248 GDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGG  327 (382)
Q Consensus       248 e~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v  327 (382)
                      +++++..++-+.+|+|--. .|-..+-.....  .-....++.--..+|-+++.+.+. ..|         +.|+|-..+
T Consensus       304 ~ekle~~~~~~llPl~~~~-~G~k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~sl-~~k---------~p~~~~l~l  370 (769)
T KOG1650         304 IEKLEDLVSGLLLPLYFAI-SGLKTDISRINK--WGALIRTILIFGAVKLLSTLGTSL-YCK---------LPLRDSLAL  370 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCCCEEHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHC---------CCHHHHHHH
T ss_conf             9999887888998889654-152122898888--999999999999999999999999-965---------860688999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99875589999998664068725788765599999999999999999941477
Q gi|255764465|r  328 SILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVFKIPLR  380 (382)
Q Consensus       328 ~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~  380 (382)
                      +.+=-.+-.+-+.+-+.+.+..-.-.+.--++++.+-+.+++.--++.....+
T Consensus       371 ~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p  423 (769)
T KOG1650         371 GLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDP  423 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99986554999999888873276563219999999998753299999875640


No 11 
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.20  E-value=0.015  Score=33.90  Aligned_cols=261  Identities=15%  Similarity=0.216  Sum_probs=141.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE--------
Q ss_conf             699998767999999999999999986486789999899999987788999999898237980003504553--------
Q gi|255764465|r   50 TLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIP--------  121 (382)
Q Consensus        50 ~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP--------  121 (382)
                      +..+-..|.=..+-.|.+|+|++-|-    |++.|+.  -..++...++++.++...+..     .-||...        
T Consensus        55 ~~i~~laelGVv~LLF~iGLE~sl~~----L~~~~~~--~~~~g~~qv~~~~~l~~~~~~-----~lG~~~~~ai~lG~~  123 (558)
T PRK10669         55 KLAPELAELGVILLMFGVGLHFSLKD----LMAVKSI--AIPGAIAQIAVATLLGMALSA-----VLGWSLMTGIVFGLC  123 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHH
T ss_conf             89999999979999998786689999----9998989--999999999999999999999-----978668899999999


Q ss_pred             -CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCHHHHHH--------HHHHHHH
Q ss_conf             -3773789999999842788899999999999875447998888641-------77666799999--------9999999
Q gi|255764465|r  122 -TATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFY-------TQSLNLFALQV--------AITLIFL  185 (382)
Q Consensus       122 -~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifY-------s~~i~~~~L~~--------a~~~~~~  185 (382)
                       +.+-+|..+-++.--|.--.+.-| ..+...++||+.++..+++.-       +++.+...+..        ..+....
T Consensus       124 la~SSTaIv~k~L~e~~~l~t~~G~-~~lgill~QDi~~v~~L~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  202 (558)
T PRK10669        124 LSTASTVVLLRALEERQLIDSQRGQ-IAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAI  202 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9862599999999985112385116-788889999999999999999862123578763788999999999999999999


Q ss_pred             HHHHHH------------CCCCCHHHHHHHHH---HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             999862------------59861237899999---999999712865678988886317678777894000037887634
Q gi|255764465|r  186 LFLLNR------------CGFTNLFIYGFLGF---FLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDG  250 (382)
Q Consensus       186 l~~l~~------------~~v~~~~~y~~~g~---~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~  250 (382)
                      .++..|            .+.+....-..+.+   ..|..+..-|+++.++.-+.|+.+-.         ....++.|+.
T Consensus       203 ~~~~gr~ll~~l~~~~a~~~~~Elf~l~~l~~~l~~a~~a~~~~GlS~~lGAFlAGl~la~---------s~~~~~i~~~  273 (558)
T PRK10669        203 MMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE---------SELSHRAAHD  273 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---------CCHHHHHHHH
T ss_conf             9999999999999999870782899999999999999999998374488899997688606---------8058999998


Q ss_pred             HCCCCCHHHHHHHHHHHCCCCCCCCCHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             204432478799988512632467647873-10-2699999998644558999999999961754389998999999999
Q gi|255764465|r  251 LKSWVMPLVLPAFVFVNTGLTISTIPYTDI-SD-PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGS  328 (382)
Q Consensus       251 l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~-~~-pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~  328 (382)
                      +.|+...+ +++| |..-|..++   ...+ .+ +..+.....++++|++..+......          |.+|+.-.-.|
T Consensus       274 i~p~rd~f-l~lF-FvsvGm~~d---~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~----------g~~~~~a~~~g  338 (558)
T PRK10669        274 TLPLRDAF-AVLF-FVSVGMLFD---PLILIQQPLAVLATLAIILFGKSAAAFFLVRLF----------GHSQRTALTIA  338 (558)
T ss_pred             HHHHHHHH-HHHH-HHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHH
T ss_conf             87299999-9999-999988628---999998899999999999999999999999981----------89877899999


Q ss_pred             -HHHHHHHHHHHHHHHHHCC
Q ss_conf             -9875589999998664068
Q gi|255764465|r  329 -ILCGIGFTMSLFLTLQAFP  347 (382)
Q Consensus       329 -~LaGIGFTmSLfIa~LAF~  347 (382)
                       .|+-+| -.|+-++.++..
T Consensus       339 ~~Laq~G-EFsfvl~~~a~~  357 (558)
T PRK10669        339 ASLAQIG-EFAFILAGLGMA  357 (558)
T ss_pred             HHHCCCC-CHHHHHHHHHHH
T ss_conf             8860354-099999999998


No 12 
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family; InterPro: IPR004771   Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport .   The monovalent Cation:Proton antiporter-1 (CPA1) family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.   This family represent the K(+)/H(+) antiporter. ; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016021 integral to membrane.
Probab=96.26  E-value=0.078  Score=29.62  Aligned_cols=205  Identities=19%  Similarity=0.277  Sum_probs=119.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHH-HCCCCCCCCCEEEEE--
Q ss_conf             676999987679999999999999999864867899998999999877889999---99898-237980003504553--
Q gi|255764465|r   48 NLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPA---CIYMI-INCHTEIYLKGWAIP--  121 (382)
Q Consensus        48 ~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pa---liy~~-~n~~~~~~~~GWaIP--  121 (382)
                      +.+.-+-..|.=--++-|.+|||+--|.    |...||..++.  +.=++++|.   ...-. +.     ..-||.-.  
T Consensus        56 siP~~~~laE~GV~lLmF~~GLE~d~~~----L~~~~k~~~~~--g~lq~~~~~GfG~ll~~~~~-----~~~g~~~~Ge  124 (314)
T TIGR00932        56 SIPLVNHLAELGVILLMFLIGLELDLER----LKKLRKAAFGV--GVLQVLVSGGFGVLLGLLLG-----HLLGLALGGE  124 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHCCCCCCC
T ss_conf             3558998988889999999887328899----99999999722--07764222678999999999-----9850357886


Q ss_pred             -------CC---------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--C------------CC
Q ss_conf             -------37---------737899999998427888999999999998754479988886417--7------------66
Q gi|255764465|r  122 -------TA---------TDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT--Q------------SL  171 (382)
Q Consensus       122 -------~A---------TDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs--~------------~i  171 (382)
                             .|         |=+|.++-+|.=.+---.+.=| --+.-+|+||+-.+...++-..  +            +.
T Consensus       125 RHikfsv~a~~~G~~L~~~Stav~~~~L~E~~~~~~~~G~-~~l~~l~~~D~a~v~lL~l~~~l~~~~g~~~~~~~~~~~  203 (314)
T TIGR00932       125 RHIKFSVAAVVIGIILALSSTAVVVQVLKERNLLKTREGQ-TVLGILLFQDIAVVPLLALLPLLATGSGKETVSASTEHV  203 (314)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             0257889999999999999999999998650533346789-999999999999999999999856887664536410457


Q ss_pred             CHHHHHHHHHHHHHHH-HH------------HHCCCCCHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             6799999999999999-98------------6259861237899999999-----9997128656789888863176787
Q gi|255764465|r  172 NLFALQVAITLIFLLF-LL------------NRCGFTNLFIYGFLGFFLW-----HSIFKSGIHTTVFGVIMALLLPDIK  233 (382)
Q Consensus       172 ~~~~L~~a~~~~~~l~-~l------------~~~~v~~~~~y~~~g~~lW-----~~~~~sGIHaTiAGV~l~~~iP~~~  233 (382)
                      ++..+........... +.            .+.+.++...-.....+.|     |.+-.-|+|+-++.-+.|..++...
T Consensus       204 ~~~~~~~~~~~~~~~~~l~g~~l~~~~~~~~~~~~~~~~Se~~t~~~L~~~~g~a~~~~~~Gls~alGAF~AGv~ls~s~  283 (314)
T TIGR00932       204 ALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEARLSKDSELFTAASLLLVLGSAYLADLLGLSMALGAFLAGVLLSESE  283 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999999999998489999998622899845899999999999999998874769999989878740015


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             7789400003788763420443247879998851263246
Q gi|255764465|r  234 NYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTIS  273 (382)
Q Consensus       234 ~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~  273 (382)
                              ...|++|++++|.-+-+-+|+| |...|-++|
T Consensus       284 --------~~~~~l~~~~~p~~yg~l~plF-F~svGm~~d  314 (314)
T TIGR00932       284 --------YRKHELESDIEPIGYGLLLPLF-FISVGMSLD  314 (314)
T ss_pred             --------HHHHHHHHHHCCCCCCEEEEHH-HEEECCCCC
T ss_conf             --------5788999874011450010010-023245679


No 13 
>KOG1291 consensus
Probab=92.13  E-value=0.74  Score=23.72  Aligned_cols=172  Identities=17%  Similarity=0.225  Sum_probs=91.4

Q ss_pred             CCCCHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCH
Q ss_conf             37737899999---9984278889999999999987544799888864177666799999999999999986-2598612
Q gi|255764465|r  122 TATDIAFTLGI---LSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLN-RCGFTNL  197 (382)
Q Consensus       122 ~ATDiAFalgv---l~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~-~~~v~~~  197 (382)
                      .+||++=.+|.   +.++.+ +|-..-|+++.+-.       .++=++|+-+++-.-...+........... ...+.++
T Consensus       116 I~sDiqEVIGTAiAlniL~~-IPL~~GVliTilD~-------f~fL~l~kyGiRklE~~~~~Li~~mai~F~~el~~~kp  187 (503)
T KOG1291         116 IASDIQEVIGTAIALNILSN-IPLWAGVLITILDT-------FLFLFLDKYGIRKLEAFFAFLIVTMAISFGVELGVSKP  187 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECC
T ss_conf             97148999999999999967-86787789999999-------99999704343999999999999999977504887448


Q ss_pred             HH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC---------CCCCCCCCCC------HHHHHHHHHCCCCCHH--
Q ss_conf             37--899999999999712865678988886317678---------7778940000------3788763420443247--
Q gi|255764465|r  198 FI--YGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDI---------KNYHSPSNRI------SFYLLGDGLKSWVMPL--  258 (382)
Q Consensus       198 ~~--y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~---------~~~~~~~~~~------~~~~le~~l~p~v~~~--  258 (382)
                      .+  -+.-|.+-|.....++---+--|++-+..|||.         +|..+++.+.      .-...|+...-.++|.  
T Consensus       188 ~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~ial~vsF~in  267 (503)
T KOG1291         188 SGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAIALFVSFSIN  267 (503)
T ss_pred             CCHHEEEEEECCCCCCCCCCHHHHHHHHHCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             71121451024656688871799998872535236323242244055426876664157765201089899999999999


Q ss_pred             --HHHHH---HHHH------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --87999---8851------2632467647873102699999998644558999
Q gi|255764465|r  259 --VLPAF---VFVN------TGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIF  301 (382)
Q Consensus       259 --IlPlF---AfaN------aGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~  301 (382)
                        +.-+|   .|.|      +|..+.+....+-.+....|..++-..|++.+..
T Consensus       268 ~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~I  321 (503)
T KOG1291         268 LFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYI  321 (503)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             999999988652175136662022058876102206888999887723179999


No 14 
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=88.46  E-value=1.6  Score=21.69  Aligned_cols=277  Identities=18%  Similarity=0.139  Sum_probs=127.9

Q ss_pred             CCHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCC--CCCC
Q ss_conf             769999876-----799999999999999998648678999989999998778899999-----9898237980--0035
Q gi|255764465|r   49 LTLRDWVND-----ILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPAC-----IYMIINCHTE--IYLK  116 (382)
Q Consensus        49 ~~l~~wvND-----gLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pal-----iy~~~n~~~~--~~~~  116 (382)
                      .+.+.|.|+     ...++=-|..|+|++++-...+-+..-      .-+.+|++.-+.     .|..++ +-|  .+.-
T Consensus        51 ~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~------~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l  123 (429)
T COG0025          51 ISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSIL------VLALPLVLITALGIGLLAHWLLP-GIPLAAAFL  123 (429)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_conf             68310147799999999999999885398999987079999------99999999999999999999946-814899999


Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHH-----H--------HH
Q ss_conf             0455337737899999998427888999999999998754479988886417-----7666799-----9--------99
Q gi|255764465|r  117 GWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT-----QSLNLFA-----L--------QV  178 (382)
Q Consensus       117 GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs-----~~i~~~~-----L--------~~  178 (382)
                      ==++-.+||-+-...+..=  .|+|+.++..|.+-...+|--+++.-.+...     +..+..+     +        ..
T Consensus       124 ~gAilspTDPv~v~~i~~~--~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G  201 (429)
T COG0025         124 LGAILSPTDPVAVSPIFKR--VRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLG  201 (429)
T ss_pred             HHHHHCCCCHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             8666168828888999965--79987899999875640006899999999999845676532479999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCC---CHHHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC-CCCC-CCCCHHHHHHH
Q ss_conf             99999999998625986---12378----9999999999971286567898888631767877-7894-00003788763
Q gi|255764465|r  179 AITLIFLLFLLNRCGFT---NLFIY----GFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKN-YHSP-SNRISFYLLGD  249 (382)
Q Consensus       179 a~~~~~~l~~l~~~~v~---~~~~y----~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~-~~~~-~~~~~~~~le~  249 (382)
                      .+......+.+++.+.+   +....    +......+..--.-|+..-+|-|..|+..-...+ ..++ +.+...+...+
T Consensus       202 ~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe  281 (429)
T COG0025         202 LLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWE  281 (429)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999999999999982334067999999999999999998747608999999989877788751342358999999999


Q ss_pred             HHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH--HHHH
Q ss_conf             42044324787999885126324676478731026999999986445589999999999617543899989999--9999
Q gi|255764465|r  250 GLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCL--LYGG  327 (382)
Q Consensus       250 ~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~--l~~v  327 (382)
                      .+.-   .+---+|.+--+-++...  .....=+-.+-+....++..|++++...+...    .+.|+..+|++  +.+-
T Consensus       282 ~l~~---~ln~~iFiLlG~~i~~~~--~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~----~~~~~~~~~~~~~~l~w  352 (429)
T COG0025         282 VLDF---LLNGLLFVLLGAQLPLSL--LLALGLLGLLVALVAVLLARPLWVFLSLKGSN----LKLRDPLPWRERLFLSW  352 (429)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCHHHHHHHHH
T ss_conf             9999---999999999998845889--77757999999999999999999999970121----12567788888999995


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             9987558999999866406
Q gi|255764465|r  328 SILCGIGFTMSLFLTLQAF  346 (382)
Q Consensus       328 ~~LaGIGFTmSLfIa~LAF  346 (382)
                      +-.-|   ++|+..+....
T Consensus       353 ~G~RG---~vsla~al~~p  368 (429)
T COG0025         353 AGPRG---VVSLALALLIP  368 (429)
T ss_pred             CCCCC---HHHHHHHHHHH
T ss_conf             46443---99999999847


No 15 
>PRK05326 potassium/proton antiporter; Reviewed
Probab=84.24  E-value=2.7  Score=20.34  Aligned_cols=264  Identities=19%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHH-----HHHHCCCCCCCCCEEEEE
Q ss_conf             6769999876799999999999999998648678999989999-9987788999999-----898237980003504553
Q gi|255764465|r   48 NLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPL-LGAIGGITFPACI-----YMIINCHTEIYLKGWAIP  121 (382)
Q Consensus        48 ~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~-~AAlGGmi~Pali-----y~~~n~~~~~~~~GWaIP  121 (382)
                      +..+.+-+-..-.++=-|-=|++.|-+-       .|++.-|. .=+.-|+++-+.+     ++.+...-.+..-=-+|.
T Consensus        55 ~~~la~~igs~ALaiILF~GGl~t~~~~-------~r~~~~p~~~LaTlGV~iT~~~~g~~a~~llgl~w~~alLlGAIv  127 (563)
T PRK05326         55 NYPLAYLVGNLALAVILFDGGLRTRWSS-------FRPALWPALSLATLGVLITAGLTGLFAHWLLGLSWLEGLLLGAIV  127 (563)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEE
T ss_conf             7799999999999999871746798899-------987766668999999999999999999999748799999883443


Q ss_pred             CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCHHHH-------------HHHHHHHH
Q ss_conf             37737899999998427888999999999998754479988----88641776667999-------------99999999
Q gi|255764465|r  122 TATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAI----MAIFYTQSLNLFAL-------------QVAITLIF  184 (382)
Q Consensus       122 ~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlV----IAifYs~~i~~~~L-------------~~a~~~~~  184 (382)
                      .+||-|=...++.--+-|++..++.-|-.-...+|--|+..    +++-.+++-+....             ....+...
T Consensus       128 ~sTDaAaVfslLR~~~~~lk~rl~~~Le~ESg~NDP~Av~Ltv~li~~~~~~~~~~~~~~~~~~~q~~iG~~iG~~~G~l  207 (563)
T PRK05326        128 GSTDAAAVFSLLRSKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGESLSWGFLGLFLQQFGLGALIGLLGGKL  207 (563)
T ss_pred             ECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             04772676777742678853578989978772235799999999999984788647999999999999999999999999


Q ss_pred             HHHHHHHCCCCCH--HHHHHHHHH-HH----HHHHHCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             9999862598612--378999999-99----99971286-5678988886317678777894000037887634204432
Q gi|255764465|r  185 LLFLLNRCGFTNL--FIYGFLGFF-LW----HSIFKSGI-HTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVM  256 (382)
Q Consensus       185 ~l~~l~~~~v~~~--~~y~~~g~~-lW----~~~~~sGI-HaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~  256 (382)
                      ..+.+||.+....  .+-..++.+ +=    -.++.||. -.+++|+.+|=    ++..+    +....+..+.+.   -
T Consensus       208 ~~~ll~r~~l~~~gL~pvl~la~~l~~fa~a~~l~gSGfLAVyvaGivlGN----~~~~~----~~~i~~F~egla---~  276 (563)
T PRK05326        208 LVKLLNRIALPAEGLYPILVLSGALLIFAATAALGGSGFLAVYLAGLVLGN----RPIRH----RKSILRFFDGLA---W  276 (563)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC----CCCCC----HHHHHHHHHHHH---H
T ss_conf             999998466860011689999999999999998663539999999999827----77865----799999999999---9


Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             47879998851263246764787310269999999---864455899999999996175438999899999999998755
Q gi|255764465|r  257 PLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLG---LFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGI  333 (382)
Q Consensus       257 ~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~g---L~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGI  333 (382)
                      ....-+|-..-+-++.+  .+.+.   ...|+.++   .++-.|+.++...          +|-+.+|++-.=++-.+==
T Consensus       277 L~qi~mFllLGllv~Ps--~L~~~---~~~al~lal~LifVARPlaV~lsl----------~~f~~~~rEk~fiSWvGlR  341 (563)
T PRK05326        277 LAQIGMFLVLGLLVTPS--ELLPI---ALPALLLALFLIFVARPLAVFLSL----------LPFRFNLREKLFISWVGLR  341 (563)
T ss_pred             HHHHHHHHHHHHHHCHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHCCC
T ss_conf             99999999999873999--99998---999999999999999999999996----------4799988888899886355


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999986640
Q gi|255764465|r  334 GFTMSLFLTLQA  345 (382)
Q Consensus       334 GFTmSLfIa~LA  345 (382)
                      | -+|+..|...
T Consensus       342 G-aVpIvlA~~p  352 (563)
T PRK05326        342 G-AVPIILATFP  352 (563)
T ss_pred             C-HHHHHHHHHH
T ss_conf             4-0678988748


No 16 
>PRK03854 mdoC glucans biosynthesis protein; Provisional
Probab=78.12  E-value=4.5  Score=19.04  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----C
Q ss_conf             4789853215579999999999998338712433343112433-5676999987679999999999999999864----8
Q gi|255764465|r    4 NKFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKI-ANLTLRDWVNDILMILYFFMIGLELKHELIH----G   78 (382)
Q Consensus         4 ~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~~~~~~~~-~~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~----G   78 (382)
                      -|+++.+=....++|.+--=.++...+-+     |+..-+... .--.+-.|+|.--|.+||++-|.=....+-.    +
T Consensus         8 R~~~LD~LR~~a~~L~I~~H~~m~y~~~~-----w~v~~~~~s~~l~~~~~~~~~wRMplfFlISG~f~~~~l~rrg~~~   82 (374)
T PRK03854          8 REYFLDSIRAWLMLLGIPFHISLIYSSHT-----WHVNSAEPSLWLTLFNDFIHAFRMQVFFVISGYFSYMLFLRYPLKR   82 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             34438999999999999999611468975-----4636874207999999999988999999999999999998438999


Q ss_pred             CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             67899-9989999998778899999989823
Q gi|255764465|r   79 ELSSW-TKRSLPLLGAIGGITFPACIYMIIN  108 (382)
Q Consensus        79 eLs~~-r~a~lP~~AAlGGmi~Paliy~~~n  108 (382)
                      =+++| ++...|.+.+.= .++|...|..-.
T Consensus        83 f~~~R~~RL~iPll~g~~-~i~p~q~~~~~~  112 (374)
T PRK03854         83 WWKVRVERVGIPMLTAIP-LLTLPQFIMLQY  112 (374)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf             999999998999999999-999999999999


No 17 
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component; InterPro: IPR013853 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars.    The only characterised member of this family of PTS transporters is the Escherichia coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC.    This family is specific for the IIC component of the PTS Gat family. It contains fewer proteins than IPR004703 from INTERPRO..
Probab=70.96  E-value=6.8  Score=17.94  Aligned_cols=105  Identities=24%  Similarity=0.339  Sum_probs=57.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--HHCCCCCHHHHHHHHHHHC-
Q ss_conf             5986123789999999999971286567898888631767877789400003788763--4204432478799988512-
Q gi|255764465|r  192 CGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGD--GLKSWVMPLVLPAFVFVNT-  268 (382)
Q Consensus       192 ~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~--~l~p~v~~~IlPlFAfaNa-  268 (382)
                      ..++|.|.|.+.|.++ +.+-.|=+.+-++-|.-+.+.=.-.+=..+..+ +..+||-  .=|-..+ --.|+|.+..| 
T Consensus       113 VDIwN~WHytftgavv-~l~tgS~i~g~~gav~haa~~lK~aDWtA~~v~-nf~eLeGisIp~G~~~-s~~P~~vLvdaI  189 (407)
T TIGR00827       113 VDIWNFWHYTFTGAVV-YLVTGSLIIGLLGAVIHAALALKLADWTAKRVR-NFYELEGISIPQGSSA-SSAPLIVLVDAI  189 (407)
T ss_pred             EEEEHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHCCCCCCCCCCCCH-HHHHHHHHHHHH
T ss_conf             4310158899999999-999889999999999999999886203130000-1006886332677522-565899999988


Q ss_pred             --------CCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------632467647----8731026999999986445589
Q gi|255764465|r  269 --------GLTISTIPY----TDISDPIVWGVMLGLFLGKQSG  299 (382)
Q Consensus       269 --------GV~l~~~~~----~~~~~pv~~gI~~gL~iGK~lG  299 (382)
                              +.+.|.++.    +-+.+|+..|+++|+.+|=--|
T Consensus       190 ieKIPg~k~~n~dad~IQrrfG~fGepv~iG~vlGliiGllAG  232 (407)
T TIGR00827       190 IEKIPGVKRINIDADEIQRRFGIFGEPVIIGLVLGLIIGLLAG  232 (407)
T ss_pred             HHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             8517875553588656755227878722788899999998727


No 18 
>TIGR02660 nifV_homocitr homocitrate synthase; InterPro: IPR013477    Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation. They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by these enzymes becomes a part of the iron-molybdenum cofactor of nitrogenase.; GO: 0004410 homocitrate synthase activity, 0051188 cofactor biosynthetic process.
Probab=63.85  E-value=1.3  Score=22.19  Aligned_cols=12  Identities=42%  Similarity=0.797  Sum_probs=9.1

Q ss_pred             HHHHHHCCCCHH
Q ss_conf             999971286567
Q gi|255764465|r  208 WHSIFKSGIHTT  219 (382)
Q Consensus       208 W~~~~~sGIHaT  219 (382)
                      |.|-|+||||..
T Consensus       279 WVF~HESGIHVd  290 (369)
T TIGR02660       279 WVFTHESGIHVD  290 (369)
T ss_pred             HHEECCCHHHHH
T ss_conf             010001178788


No 19 
>KOG4505 consensus
Probab=62.43  E-value=10  Score=16.91  Aligned_cols=108  Identities=21%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf             9987679999999999999999864867899998999999877889999998982-379800035045533773789999
Q gi|255764465|r   53 DWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMII-NCHTEIYLKGWAIPTATDIAFTLG  131 (382)
Q Consensus        53 ~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~-n~~~~~~~~GWaIP~ATDiAFalg  131 (382)
                      .=+....+.+=-|.++.|+-|......-+|.--..+|+. +.|=.+---.+|..+ |.+..+...==+--||||--.+--
T Consensus        72 ~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVm-i~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsss  150 (467)
T KOG4505          72 YEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVM-IIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSS  150 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf             413456575999999985559999998899999999999-9999999989999816621788999987736886257888


Q ss_pred             HHH--HHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999--842788899999999999875447998
Q gi|255764465|r  132 ILS--WIGPNIPSSLKIFFTALTMIDDFSAIA  161 (382)
Q Consensus       132 vl~--llg~rvp~~lrvFLlaLAIvDDlgaIl  161 (382)
                      +..  .+-+|+|..+|..|.+-.-.+|--||-
T Consensus       151 IV~~g~~akrvPeriR~lL~AESGcNDGMaip  182 (467)
T KOG4505         151 IVGGGKFAKRVPERIRNLLAAESGCNDGMAIP  182 (467)
T ss_pred             HHCCCHHHHHCHHHHHHHHHHHCCCCCCCCHH
T ss_conf             74676476658199999998860787774136


No 20 
>TIGR00831 a_cpa1 Na+/H+ antiporter; InterPro: IPR004705   Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport .    This group is specific for the bacterial members of this family. .
Probab=60.52  E-value=11  Score=16.70  Aligned_cols=248  Identities=16%  Similarity=0.118  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHH-HHHHCC---CCCCC--CCEEEEECCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9987788999999-898237---98000--35045533773789999999842-78889999999999987544799888
Q gi|255764465|r   91 LGAIGGITFPACI-YMIINC---HTEIY--LKGWAIPTATDIAFTLGILSWIG-PNIPSSLKIFFTALTMIDDFSAIAIM  163 (382)
Q Consensus        91 ~AAlGGmi~Pali-y~~~n~---~~~~~--~~GWaIP~ATDiAFalgvl~llg-~rvp~~lrvFLlaLAIvDDlgaIlVI  163 (382)
                      .=|++++++-+.. =+..||   |.|-.  .-==|+-.+||-   .++..+++ .|+|+.+-.-|-.-++.+|--|+++.
T Consensus        81 ~~a~~lVvvT~v~vgf~~~Wv~lGipl~~A~~lgAvlSpTDa---vav~g~~k~~r~Pkk~~~~l~GEsl~NDg~alV~f  157 (541)
T TIGR00831        81 LLALALVVVTVVAVGFSLRWVVLGIPLALALVLGAVLSPTDA---VAVAGLVKEIRLPKKLLIVLEGESLLNDGAALVVF  157 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999988998775466677667417368999999876173208---99999841344237889997222456428999999


Q ss_pred             HHHCC--------------CCCCHHHHHHHHHHHHHHHHHHH-------CCCCCHHHHHH-------HHHHHHHHHHHCC
Q ss_conf             86417--------------76667999999999999999862-------59861237899-------9999999997128
Q gi|255764465|r  164 AIFYT--------------QSLNLFALQVAITLIFLLFLLNR-------CGFTNLFIYGF-------LGFFLWHSIFKSG  215 (382)
Q Consensus       164 AifYs--------------~~i~~~~L~~a~~~~~~l~~l~~-------~~v~~~~~y~~-------~g~~lW~~~~~sG  215 (382)
                      ++--.              -+.-..+++.+.+++.+-|+..|       ++.....--+.       .+.++=-.++.||
T Consensus       158 a~avava~G~~~f~p~~a~~~F~vv~~GGi~aGl~Vg~L~~RslrfllR~~iD~pl~eial~~l~pfa~fllAe~~~~SG  237 (541)
T TIGR00831       158 AVAVAVALGKAVFDPAAAVVEFVVVAVGGILAGLVVGYLVTRSLRFLLRAKIDEPLVEIALLLLAPFAAFLLAERLKVSG  237 (541)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             99999971532110578899899988889999999999999999999861367278999999999999999997808767


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH---HH
Q ss_conf             6567898888631767877789--400003788763420443247879998851263246764787310269999---99
Q gi|255764465|r  216 IHTTVFGVIMALLLPDIKNYHS--PSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGV---ML  290 (382)
Q Consensus       216 IHaTiAGV~l~~~iP~~~~~~~--~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI---~~  290 (382)
                      |   +|-|.-|+.+-..-+.+.  +..|...+...+.+.-.+|.. +-+|-=.|.-..+++...+....|-.-=-   .-
T Consensus       238 v---~Avvaagl~lt~~G~~~~~~~~~Rl~a~~fW~~~~Fl~Ng~-~f~l~Gvq~pg~i~~~~~e~~~~p~a~ilal~~~  313 (541)
T TIGR00831       238 V---VAVVAAGLVLTRVGRDFSISAASRLRALDFWSVLVFLVNGI-VFVLVGVQLPGIIESALKEAEVAPAAVILALAVT  313 (541)
T ss_pred             H---HHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             8---89999989870568730323877887976899999999889-9899860314799998776306707778999998


Q ss_pred             HHHHHHHHHHHHH--HHHHHH---CCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9864455899999--999996---17543899989---999999999875589999998664068
Q gi|255764465|r  291 GLFLGKQSGIFLF--AFSTVK---IGWGKLPKDTN---WCLLYGGSILCGIGFTMSLFLTLQAFP  347 (382)
Q Consensus       291 gL~iGK~lGI~~~--s~lavk---l~~~~lP~g~~---w~~l~~v~~LaGIGFTmSLfIa~LAF~  347 (382)
                      +.++=-.+--.=|  +|..-|   .-+.|.|.+++   .++..-++ -||.==-+|+ =+-|+++
T Consensus       314 ~~viy~~~~~vrfGW~~~l~~~~nR~LKK~~~~~GsWt~r~~~v~s-waG~RGai~l-A~aLs~p  376 (541)
T TIGR00831       314 AVVIYAVLAYVRFGWLTVLKKFVNRVLKKKTREVGSWTFREKLVVS-WAGLRGAISL-AAALSVP  376 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHH-HHHHHHC
T ss_conf             9999999999986478765455411015777534527887777765-0551028999-9998400


No 21 
>pfam11833 DUF3353 Protein of unknown function (DUF3353). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=52.36  E-value=15  Score=15.88  Aligned_cols=40  Identities=20%  Similarity=0.167  Sum_probs=26.6

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             99888864177666799999999999999986259861237
Q gi|255764465|r  159 AIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFI  199 (382)
Q Consensus       159 aIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~  199 (382)
                      .+.++.+|.+.+ +-..+.+++.....+|++||++.+-..-
T Consensus       102 ~L~~~~l~~~~~-~~~~l~LAls~~~~iyfl~rk~~~~~rA  141 (193)
T pfam11833       102 LLALLLLLQGAE-SGPQLQLALSTGACIYFLNRKGRRFGRA  141 (193)
T ss_pred             HHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             999999860688-8731899999999999888850317899


No 22 
>PRK09867 hypothetical protein; Provisional
Probab=51.06  E-value=16  Score=15.76  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             99999998625986123789999999999971286567898888631767877789400003788763420443
Q gi|255764465|r  182 LIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWV  255 (382)
Q Consensus       182 ~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v  255 (382)
                      +..+++...|+-.-+...|  .-+.+|.++|.-|=|=|-|-|+.+.-+-    +.-..+|++-+|+-|..+..+
T Consensus        44 ~~~~L~~tyrkf~ls~l~Y--~li~~~~~ih~iGaHYTYA~VP~g~wl~----d~fg~~RN~YDRlgHF~~Gf~  111 (209)
T PRK09867         44 VVPLLLATARRYPLTPLLY--TLIFFHAIILMVGGQYTYAKVPVGFEVQ----EWLGLSRNPYDKLGHFFQGLV  111 (209)
T ss_pred             HHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHCCCCCCCCCCCCHHHH----HHHCCCCCCCCHHHHHHHHHH
T ss_conf             9999999986078957999--9999999999812310000388406689----985532146411688898987


No 23 
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein; InterPro: IPR011853    In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This entry describes such transporters, found in the archaea and in bacteria..
Probab=46.83  E-value=18  Score=15.36  Aligned_cols=145  Identities=21%  Similarity=0.314  Sum_probs=80.9

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHCCCCCCCCCEEEEE--CCCCHHHH-HHHHHHH--CCCCC-HHH---HHHHHHHHHHHH-
Q ss_conf             99999-87788999999898237980003504553--37737899-9999984--27888-999---999999998754-
Q gi|255764465|r   88 LPLLG-AIGGITFPACIYMIINCHTEIYLKGWAIP--TATDIAFT-LGILSWI--GPNIP-SSL---KIFFTALTMIDD-  156 (382)
Q Consensus        88 lP~~A-AlGGmi~Paliy~~~n~~~~~~~~GWaIP--~ATDiAFa-lgvl~ll--g~rvp-~~l---rvFLlaLAIvDD-  156 (382)
                      .|... =++-...=+.+|+.+|..+ -..++|++|  +.||+.++ ++++-++  .||.- ..+   -...+.-+-.+| 
T Consensus        65 ~~~yDwll~~~a~~~~~Yl~~~y~~-l~~~~~~~~~~t~~D~v~g~l~~l~vLEa~RR~~G~~L~~l~~~f~~Y~l~g~~  143 (681)
T TIGR02123        65 VPWYDWLLALLALAAALYLPLNYLE-LLERRGGIPIFTTTDVVVGVLLILLVLEATRRTVGWALPILALVFLLYALFGPI  143 (681)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             5159999999999999979841688-998606677740699999999999999999873206999999999999630433


Q ss_pred             -HHHHH-----------HHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHCCCCCHHHHHHHHHHHH-------HHHHH
Q ss_conf             -47998-----------88864177666799999999999999----986259861237899999999-------99971
Q gi|255764465|r  157 -FSAIA-----------IMAIFYTQSLNLFALQVAITLIFLLF----LLNRCGFTNLFIYGFLGFFLW-------HSIFK  213 (382)
Q Consensus       157 -lgaIl-----------VIAifYs~~i~~~~L~~a~~~~~~l~----~l~~~~v~~~~~y~~~g~~lW-------~~~~~  213 (382)
                       +.+++           =--.+++|++.=.++.++..-+....    ++.|.|+-+...=+..++.-+       .++..
T Consensus       144 ~lPG~l~h~g~~~~~l~~~~~~~teG~fGtp~~vs~~~if~F~LFGafL~~~G~G~fF~D~a~a~~G~~~GGPAKvAV~s  223 (681)
T TIGR02123       144 WLPGILRHRGYSLEQLITHLYLTTEGIFGTPIQVSATYIFLFILFGAFLEKSGVGKFFIDLAFALAGKRRGGPAKVAVVS  223 (681)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             47762478998899999887775013578799999999999999999999850789999999998376789950457876


Q ss_pred             CCCCHHHHHHHHH-------HHCCCCC
Q ss_conf             2865678988886-------3176787
Q gi|255764465|r  214 SGIHTTVFGVIMA-------LLLPDIK  233 (382)
Q Consensus       214 sGIHaTiAGV~l~-------~~iP~~~  233 (382)
                      ||.-.|+.|=-+|       ++||.=|
T Consensus       224 Sal~G~~sGSsvANvVttG~fTIPlMK  250 (681)
T TIGR02123       224 SALMGMISGSSVANVVTTGSFTIPLMK  250 (681)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             678877899999888852000035676


No 24 
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PMID:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PMID:11929533).
Probab=45.45  E-value=19  Score=15.23  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=16.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             766679999999999999998625
Q gi|255764465|r  169 QSLNLFALQVAITLIFLLFLLNRC  192 (382)
Q Consensus       169 ~~i~~~~L~~a~~~~~~l~~l~~~  192 (382)
                      --+++..++.+.+.++..++++|+
T Consensus        91 Rfi~~~ml~~~~v~lv~y~~ls~w  114 (518)
T TIGR03368        91 RFVNWQMLLAIFVVLVAYLLLNQW  114 (518)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             407999999999999999885421


No 25 
>pfam11658 DUF3260 Protein of unknown function (DUF3260). Some members in this family of proteins are annotated as YhjU however this cannot be confirmed. Currently this family has no known function.
Probab=45.15  E-value=19  Score=15.20  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=16.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             766679999999999999998625
Q gi|255764465|r  169 QSLNLFALQVAITLIFLLFLLNRC  192 (382)
Q Consensus       169 ~~i~~~~L~~a~~~~~~l~~l~~~  192 (382)
                      --+++..++.+.+.++..++++|+
T Consensus        90 Rfi~~~ml~~~~vllv~y~~ls~w  113 (516)
T pfam11658        90 RFINWQMLLALFVLLVAYLLLSRW  113 (516)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             407999999999999999986533


No 26 
>pfam12046 DUF3529 Protein of unknown function (DUF3529). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=41.72  E-value=22  Score=14.88  Aligned_cols=54  Identities=17%  Similarity=0.098  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999999999875447998888641776667999999999999999862598
Q gi|255764465|r  141 PSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGF  194 (382)
Q Consensus       141 p~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v  194 (382)
                      +..+-+||+.++.+--.|-=+|+.+.|++--.+++++..+.-++.+++.+|.+-
T Consensus        79 S~~lAifLt~l~~~Gl~clgLVl~~l~P~~g~~~~~L~lLsPlAG~~Yw~kA~R  132 (173)
T pfam12046        79 SRFLAVFLTLLAAVGLACLGLVLSQLVPQLGWWPLLLVLLSPLAGLYYWQRASR  132 (173)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             585999999999999999999999976885509999999732244423332787


No 27 
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=41.44  E-value=22  Score=14.85  Aligned_cols=16  Identities=25%  Similarity=0.360  Sum_probs=11.3

Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             6789999899999987
Q gi|255764465|r   79 ELSSWTKRSLPLLGAI   94 (382)
Q Consensus        79 eLs~~r~a~lP~~AAl   94 (382)
                      +|+.+.|..+|.+|++
T Consensus        83 ~L~~r~Kl~l~~~aal   98 (283)
T cd06855          83 DLRWRHKLILPTFASL   98 (283)
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             2568989899999999


No 28 
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=41.32  E-value=22  Score=14.84  Aligned_cols=56  Identities=20%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             7999885126324676478731026999999986445589999999999617543899989999
Q gi|255764465|r  260 LPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCL  323 (382)
Q Consensus       260 lPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~  323 (382)
                      +|+|+|.  |+.      +.+++|..+.+..++...-.+-++..--++.-+-..+.|+.-||..
T Consensus       453 ~PIFtL~--GvE------GklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~  508 (1027)
T COG3696         453 LPIFTLT--GVE------GKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGILPESENPLM  508 (1027)
T ss_pred             HHHHHCC--CCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             0122002--534------4313407999999999999999979999999995388831116899


No 29 
>pfam11922 DUF3440 Domain of unknown function (DUF3440). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with pfam01507. This domain has a conserved KND sequence motif.
Probab=40.97  E-value=22  Score=14.85  Aligned_cols=46  Identities=26%  Similarity=0.412  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             731026999999986445589-99999999961754389998999999
Q gi|255764465|r  279 DISDPIVWGVMLGLFLGKQSG-IFLFAFSTVKIGWGKLPKDTNWCLLY  325 (382)
Q Consensus       279 ~~~~pv~~gI~~gL~iGK~lG-I~~~s~lavkl~~~~lP~g~~w~~l~  325 (382)
                      ...+|-+|+-+.|.|-|--.| |.+-+-. .-....++|++.+|++..
T Consensus        25 ~viePetW~kmv~RV~Ganfg~iY~~t~~-~G~~~i~lP~~~TWk~Y~   71 (157)
T pfam11922        25 HVIEPETWGKMVGRVNGVNFGAIYGGTSA-MGWRGIKLPEGHTWKSYS   71 (157)
T ss_pred             HHCCHHHHHHHHHHHHCCCCCCCCCCCHH-HHHCCCCCCCCCCHHHHH
T ss_conf             55187689999988714130220035400-101356799998799999


No 30 
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316   These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=39.53  E-value=24  Score=14.67  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH------------HCCCCCCHHHHHHHHHHH
Q ss_conf             69999876799999999999999998------------648678999989999998
Q gi|255764465|r   50 TLRDWVNDILMILYFFMIGLELKHEL------------IHGELSSWTKRSLPLLGA   93 (382)
Q Consensus        50 ~l~~wvNDgLMaiFFf~vGLEiKrE~------------~~GeLs~~r~a~lP~~AA   93 (382)
                      ++.-..|..||  |=-++|||.|+.+            .+|--||+--.++|.++.
T Consensus       219 ~lGSVLnhvLl--HqTViGLEaKkQlE~~Ge~PD~~~GcVGGGSNFaG~~fPf~~D  272 (426)
T TIGR01415       219 SLGSVLNHVLL--HQTVIGLEAKKQLEEAGEKPDVIIGCVGGGSNFAGLAFPFVAD  272 (426)
T ss_pred             CCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCHHHH
T ss_conf             46305666788--7667876455532410799988999733854478775011223


No 31 
>COG3775 GatC Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]
Probab=39.20  E-value=24  Score=14.64  Aligned_cols=103  Identities=17%  Similarity=0.280  Sum_probs=66.7

Q ss_pred             HHHH--HHHHHHHCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CC
Q ss_conf             7899--999998427888999999999998---7544799888864177666799999999999999986259-----86
Q gi|255764465|r  126 IAFT--LGILSWIGPNIPSSLKIFFTALTM---IDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCG-----FT  195 (382)
Q Consensus       126 iAFa--lgvl~llg~rvp~~lrvFLlaLAI---vDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~-----v~  195 (382)
                      |+|.  -.+..++-+...++++.|.--.-+   +-|+|-=-.=++-+.+++.+..+-....+-+.+...|+.+     .+
T Consensus        47 IgfvGig~Vi~ll~~~~~paaqamve~~ginL~v~DvGW~~~s~itWaS~ia~~~ip~~i~vNv~ML~~k~TkTldVDIw  126 (446)
T COG3775          47 IGFVGIGLVIGLLTDNLGPAAQAMVERTGINLHVIDVGWPPLSTITWASPIALFFIPLIILVNVAMLVTKKTKTLDVDIW  126 (446)
T ss_pred             EEEEEHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHH
T ss_conf             45000899999998534899999999719874876158875444002406899999999999999997412340341079


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf             1237899999999999712865678988886317
Q gi|255764465|r  196 NLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLL  229 (382)
Q Consensus       196 ~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~i  229 (382)
                      +.|.|...|.++.+.. .|=+-++++-++.+...
T Consensus       127 N~WH~~~tg~lv~~~t-gS~~~a~l~avi~~v~~  159 (446)
T COG3775         127 NYWHYAFTGALVYLVT-GSLIIALLAAVIHAVLV  159 (446)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf             8779999999999985-31999999999999999


No 32 
>TIGR02831 spo_II_M stage II sporulation protein M; InterPro: IPR014196    This entry represents the stage II sporulation protein M, which is encoded in a spore formation operon . SpoIIM is one of the three genes (spoIID, spoIIM and spoIIP, , , ), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers . .
Probab=38.62  E-value=25  Score=14.58  Aligned_cols=50  Identities=20%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHCCCCH-----H-HHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             589999998664068725-----7-8876-559999999999999999994147789
Q gi|255764465|r  333 IGFTMSLFLTLQAFPNAN-----N-LQEK-AKIGIILSSVISIIYAYLVFKIPLRKK  382 (382)
Q Consensus       333 IGFTmSLfIa~LAF~~~~-----~-~~~~-aKlgIL~~S~~aailG~~~l~~~~~kk  382 (382)
                      +|||++.+++++--++=-     . -||- -=-++++.|.+|.-...-.+|..-.||
T Consensus       104 ~GFtvgfLv~~~G~~G~~L~~~gvlPQN~i~iP~~l~~sv~A~~FSl~~l~~~~~k~  160 (201)
T TIGR02831       104 VGFTVGFLVNQLGMKGVLLALLGVLPQNLIIIPIILIASVIAISFSLKLLRSGFVKR  160 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             435599999874130999999998789999999999999999999999998656202


No 33 
>TIGR01833 HMG-CoA-S_euk hydroxymethylglutaryl-CoA synthase; InterPro: IPR010122   Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase.    Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA .   HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , .   This entry is specific for eukaryotic HMG-CoA synthase enzymes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process.
Probab=37.66  E-value=25  Score=14.49  Aligned_cols=43  Identities=33%  Similarity=0.457  Sum_probs=31.6

Q ss_pred             HHHHHHHHCCCCCCCCCE-EEEECCCCHHH-----------HHHHHHHHCCCCCH
Q ss_conf             999989823798000350-45533773789-----------99999984278889
Q gi|255764465|r  100 PACIYMIINCHTEIYLKG-WAIPTATDIAF-----------TLGILSWIGPNIPS  142 (382)
Q Consensus       100 Paliy~~~n~~~~~~~~G-WaIP~ATDiAF-----------algvl~llg~rvp~  142 (382)
                      -+.+|-++||-.+....| -||.+|+|||.           |=+|.++.|+..|-
T Consensus       121 TaALFNa~~WiESssWDGRyalVVagDiAvYa~G~ARPTGGAGavAmLiGp~APi  175 (461)
T TIGR01833       121 TAALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAGAVAMLIGPNAPI  175 (461)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             7999754543212675303412453211134888988752899999975689888


No 34 
>pfam01350 Flavi_NS4A Flavivirus non-structural protein NS4A. Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions. NS4A has only been found in cells infected by Kunjin virus.
Probab=37.13  E-value=26  Score=14.44  Aligned_cols=63  Identities=17%  Similarity=0.246  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH------CCCCCCCCCCC
Q ss_conf             99999999999986259861237899999999999712865-67898888631------76787778940
Q gi|255764465|r  177 QVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIH-TTVFGVIMALL------LPDIKNYHSPS  239 (382)
Q Consensus       177 ~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIH-aTiAGV~l~~~------iP~~~~~~~~~  239 (382)
                      +.....-..+++++|+++.+...=...=.+.=+++..+|+. +.+||+.+-++      +|-..+++++.
T Consensus        58 l~~~T~Gv~~~lm~~kgi~rm~lG~~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS~~  127 (145)
T pfam01350        58 LGLATLGVFLLLMARKGIGRMGLGMVVLLVAGGLLWMGGVPPGKIAGVLLIFFLLLVVLIPEPGKQRSQQ  127 (145)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC
T ss_conf             9999999999876277866357999999999999984289678858999999999960446888866754


No 35 
>TIGR01948 rnfE electron transport complex, RnfABCDGE type, E subunit; InterPro: IPR010968   The six-subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the E subunit.; GO: 0006118 electron transport, 0019866 organelle inner membrane.
Probab=36.36  E-value=26  Score=14.42  Aligned_cols=48  Identities=19%  Similarity=0.123  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999986445589999999999617543899989999999999875589999998
Q gi|255764465|r  285 VWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFL  341 (382)
Q Consensus       285 ~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfI  341 (382)
                      ++||+.-|++=.-+=+-=+--.|.|=+..+         =.-=|+--|.|||.|||+
T Consensus        93 sLG~FIPLIVvNCiilGRAEAfAskn~vl~---------S~lDG~g~GlGFT~~L~v  140 (204)
T TIGR01948        93 SLGIFIPLIVVNCIILGRAEAFASKNGVLP---------SILDGLGMGLGFTLVLVV  140 (204)
T ss_pred             HHCEECCCHHHCCHHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHH
T ss_conf             310303114431011131898987157178---------899899999999999999


No 36 
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=35.41  E-value=28  Score=14.27  Aligned_cols=32  Identities=28%  Similarity=0.595  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10269999999864455899999999996175
Q gi|255764465|r  281 SDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGW  312 (382)
Q Consensus       281 ~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~  312 (382)
                      -+|+-.||++||+-=...|.|..+|+--|.+-
T Consensus         2 iEplL~GiVLGlipvTl~GLfvaAy~QYrRg~   33 (38)
T PRK00665          2 IEPLLCGIVLGLVPVTLAGLFVAAWNQYRRGN   33 (38)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             30699778997389999999999999985056


No 37 
>pfam03956 DUF340 Membrane protein of unknown function (DUF340). Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=35.02  E-value=28  Score=14.24  Aligned_cols=61  Identities=20%  Similarity=0.357  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             76999987679999999999999999-8648678--9999899999987788999999898237
Q gi|255764465|r   49 LTLRDWVNDILMILYFFMIGLELKHE-LIHGELS--SWTKRSLPLLGAIGGITFPACIYMIINC  109 (382)
Q Consensus        49 ~~l~~wvNDgLMaiFFf~vGLEiKrE-~~~GeLs--~~r~a~lP~~AAlGGmi~Paliy~~~n~  109 (382)
                      .+.++.+.+...-+.-|.||++++++ ....+++  ++|-..+|+...+|-.+.-++....++.
T Consensus        19 ~~~~~~~~~~~L~~Llf~vGi~lg~~~~~~~~i~~~~~~~llip~~~i~gsl~gg~i~s~~l~~   82 (191)
T pfam03956        19 FSLSDNASTYLLYLLLFLIGIQLGNSGISLRQILKLNKKGLLIPLVTILGSLLGGLIAALILGI   82 (191)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             2210058999999999999898167853499999757138899999999999999999999489


No 38 
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283   This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=33.06  E-value=19  Score=15.27  Aligned_cols=19  Identities=32%  Similarity=0.191  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q ss_conf             99987558999999866406
Q gi|255764465|r  327 GSILCGIGFTMSLFLTLQAF  346 (382)
Q Consensus       327 v~~LaGIGFTmSLfIa~LAF  346 (382)
                      .+==+=|||||+| =.|.|-
T Consensus       153 AAKAG~iGFTkAL-A~E~A~  171 (244)
T TIGR01829       153 AAKAGMIGFTKAL-AQEGAR  171 (244)
T ss_pred             HHHHHHHHHHHHH-HHHCCC
T ss_conf             8862156777999-972110


No 39 
>pfam04346 EutH Ethanolamine utilisation protein, EutH. EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm.
Probab=32.69  E-value=31  Score=14.01  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=13.5

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86640687257887655999999999999999999
Q gi|255764465|r  341 LTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVF  375 (382)
Q Consensus       341 Ia~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l  375 (382)
                      =.+|+|..+  .+.+--.-.+++-+.+++++..+-
T Consensus       316 GdhLgFta~--~~p~mI~p~iigKL~~Gi~Ai~~A  348 (354)
T pfam04346       316 GDHLGFTAG--FQPSMILPMIIGKLVGGITAIAVA  348 (354)
T ss_pred             CCCHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             651101013--784410999999999879999999


No 40 
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=31.87  E-value=32  Score=13.92  Aligned_cols=202  Identities=17%  Similarity=0.152  Sum_probs=114.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---------CCC---CCC--
Q ss_conf             676999987679999999999999999864867899998999999877889999998982---------379---800--
Q gi|255764465|r   48 NLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMII---------NCH---TEI--  113 (382)
Q Consensus        48 ~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~---------n~~---~~~--  113 (382)
                      +....-.+.-..|+ +|-..|.|+- -.+.||-+||+|..-   -|+-.++.-.++|+..         .++   .++  
T Consensus       199 P~G~~g~~~~~~~v-~Faf~GiElv-GitA~Et~dP~k~ip---kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP  273 (462)
T COG1113         199 PNGFLGFLSALQIV-MFAFGGIELV-GITAAEAKDPEKAIP---KAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP  273 (462)
T ss_pred             CCCHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
T ss_conf             87569999999999-9998549999-999886128066778---988423299999999999998613141236878995


Q ss_pred             C---CCEEEEECCCCHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             0---350455337737899---9999984278889999999999987544799888864177666799999999999999
Q gi|255764465|r  114 Y---LKGWAIPTATDIAFT---LGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLF  187 (382)
Q Consensus       114 ~---~~GWaIP~ATDiAFa---lgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~  187 (382)
                      .   -+.-+||-|.||-=.   .+.++-.-+.+...-| .|-+||  +|--|=-..+-.-.+++....++.+..+..+-.
T Consensus       274 FV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsR-mL~~la--~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V  350 (462)
T COG1113         274 FVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSR-MLYSLA--KQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGV  350 (462)
T ss_pred             HHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCH-HHHHHH--HCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             89999863994203323689860002002444434305-787776--357654767640646887999999999999999


Q ss_pred             HHHHCCCCCHHHHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf             986259861237899-----999999999712865678988886317678777894000037887634204432478799
Q gi|255764465|r  188 LLNRCGFTNLFIYGF-----LGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPA  262 (382)
Q Consensus       188 ~l~~~~v~~~~~y~~-----~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPl  262 (382)
                      .+|+..-.+..-|+.     ..+..|....-|-+-             -|+.+.   ++....+..-.+.||.+|+.+-.
T Consensus       351 ~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~-------------~rk~~~---~~~~~~~f~m~~~p~~~~l~l~f  414 (462)
T COG1113         351 VLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLK-------------LRKAKP---AEGKKLKFKMPLYPFTNYLTLAF  414 (462)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCCH---HCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99760624399999999999999999999999999-------------986142---10557654466631788999999


Q ss_pred             HHHHHCCCCCC
Q ss_conf             98851263246
Q gi|255764465|r  263 FVFVNTGLTIS  273 (382)
Q Consensus       263 FAfaNaGV~l~  273 (382)
                      +++.=.+.-++
T Consensus       415 l~~vlv~m~~~  425 (462)
T COG1113         415 LAFVLVLMLFD  425 (462)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999999748


No 41 
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=31.64  E-value=32  Score=13.90  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=14.9

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             98888631767877789400003788763
Q gi|255764465|r  221 FGVIMALLLPDIKNYHSPSNRISFYLLGD  249 (382)
Q Consensus       221 AGV~l~~~iP~~~~~~~~~~~~~~~~le~  249 (382)
                      .-.++|++.|-.+..+.|+.....+-.||
T Consensus        28 ~l~l~~~~~p~~~~~~~~~~p~a~~~~Eh   56 (190)
T PRK09597         28 GLILLGIFAPFPKVPKHPSVPLAFHFTEH   56 (190)
T ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99998630678889899983189999999


No 42 
>pfam09997 DUF2238 Predicted membrane protein (DUF2238). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=31.56  E-value=32  Score=13.89  Aligned_cols=66  Identities=23%  Similarity=0.020  Sum_probs=40.9

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             999998625986123789999999999971286567898888631767877789400003788763420443
Q gi|255764465|r  184 FLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWV  255 (382)
Q Consensus       184 ~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v  255 (382)
                      .++....|+-.-+...|  ..+.+|.++|.-|=|=|-|-|+.+.-+-    +.-..+|.+-+|+-|..+..+
T Consensus         6 ~~l~~t~rrf~ls~~~y--~li~~~~~lh~iGghYTYa~VP~~~wl~----~~fg~~RN~yDRl~HF~~Gf~   71 (143)
T pfam09997         6 PLLIWTYRRFPLSNLAY--GLIFLHLVLHMIGGHYTYAEVPYGDWLN----DLFGWERNHYDRLGHFAQGLV   71 (143)
T ss_pred             HHHHHHHCCCCCCHHHH--HHHHHHHHHHHHCCEEHHHCCCHHHHHH----HHHCCCCCCHHHHHHHHHHHH
T ss_conf             47998853588857999--9999999999962000031088678999----985864343277999999987


No 43 
>PRK03735 cytochrome b6; Provisional
Probab=28.92  E-value=36  Score=13.62  Aligned_cols=138  Identities=11%  Similarity=0.212  Sum_probs=73.2

Q ss_pred             CCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCEE
Q ss_conf             1243356--76999987679999999999999999864867899998999999877889999998-98237980003504
Q gi|255764465|r   42 LEYKIAN--LTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIY-MIINCHTEIYLKGW  118 (382)
Q Consensus        42 ~~~~~~~--~~l~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy-~~~n~~~~~~~~GW  118 (382)
                      .+...|-  -.+|+|-.+.    ||+.+-+.+-|.+..|+-+.+|+..==.--.+..+..-...- ..+-++   ...-|
T Consensus        75 ~ev~~GwliR~iH~~gAs~----~~~~~~lHm~R~~~~gsyk~pre~~W~~Gv~ll~l~m~~aftGY~Lpw~---q~s~w  147 (216)
T PRK03735         75 NEVAFGWLIRSMHRWSASM----MVLMMILHTFRVYLTGGFKKPRELTWVVGVLIAVVTVGFGVTGYSLPWD---QVGYW  147 (216)
T ss_pred             HCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCH---HHHHH
T ss_conf             2361199999999988999----9999999999988277534854312499999999999998504007843---35589


Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             5533773789999999842788899999999999875447998888641776667999999999999999862598612
Q gi|255764465|r  119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNL  197 (382)
Q Consensus       119 aIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~  197 (382)
                      |.-..|.++=++-+   +|    +.++.++..    ++-.+-.-+.-||+-++-..++...+....=++.++|.|..++
T Consensus       148 a~~V~t~~~~~iP~---iG----~~l~~~~~G----g~~v~~~TL~Rff~lHv~llP~~i~~l~~~Hl~~l~~~G~snP  215 (216)
T PRK03735        148 AVKIVSGVPEAIPV---IG----DFIVTLLRG----GESVGQQTLTRFYSIHTFVLPWALAVFMLMHFLMIRKQGISGP  215 (216)
T ss_pred             HHHHHHHHHHHCCC---CC----HHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999988886160---51----899999607----8867725999999999999999999999999999965389999


No 44 
>pfam09512 ThiW Thiamine-precursor transporter protein (ThiW). Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=28.90  E-value=36  Score=13.62  Aligned_cols=121  Identities=14%  Similarity=0.083  Sum_probs=72.2

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             76342044324787999885126324676478731026999999986445589999999999617543899989999999
Q gi|255764465|r  247 LGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYG  326 (382)
Q Consensus       247 le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~  326 (382)
                      .||..+-..+-+.=|-++..+|=+.      +-+.+-...|-.++. -|--.|-++..++..+.|.   +.-.-..++.|
T Consensus        30 ~QH~iNviaaV~lGPwya~~~Af~~------sliR~~lg~Gs~lAf-pGsm~GAllaGl~yr~~k~---~~~A~lGEviG   99 (150)
T pfam09512        30 VQHAINVLAAVLLGPWYALAVAFVI------SLLRNLLGTGTLLAF-PGSMFGALLAGLLYRYTRK---LYLAALGEVIG   99 (150)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHHCCCCHHHC-CCCHHHHHHHHHHHHHHCC---HHHHHHHHHHH
T ss_conf             9999999999870709999999999------999999378854224-7733899999999999285---04677663766


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9998755899999986640687257887655999999999999999999414778
Q gi|255764465|r  327 GSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVFKIPLRK  381 (382)
Q Consensus       327 v~~LaGIGFTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~~~~~k  381 (382)
                      .+++++   .+|.-++.+-...+.. .--=-..=+.+|+.-+++|+++++.-+|+
T Consensus       100 TGiiGa---l~syPva~~~~g~~~~-~~~~~~~F~~St~~G~~ia~~~l~~L~k~  150 (150)
T pfam09512       100 TGIIGA---LLAYPVAPLLMGSEVA-LFFYVPPFILSSLIGSIIGYIVLVALKKT  150 (150)
T ss_pred             HHHHHH---HHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             589899---9999999999188305-67578899999889999999999998269


No 45 
>PRK09921 permease DsdX; Provisional
Probab=27.29  E-value=38  Score=13.44  Aligned_cols=50  Identities=6%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             HHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q ss_conf             99998427888999--999999998754479988886417----766679999999
Q gi|255764465|r  131 GILSWIGPNIPSSL--KIFFTALTMIDDFSAIAIMAIFYT----QSLNLFALQVAI  180 (382)
Q Consensus       131 gvl~llg~rvp~~l--rvFLlaLAIvDDlgaIlVIAifYs----~~i~~~~L~~a~  180 (382)
                      .+....++|.|-.+  --|+...-++=|.+=++.+-+-++    .+.+...+..+.
T Consensus        92 ~l~~~~~~~~~~a~~~~g~iv~IPvF~dv~fviL~Pl~~~lak~t~~s~~~~~~~l  147 (445)
T PRK09921         92 TLQRCRWLSADVIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPL  147 (445)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99996573626999999999821998873999999999999999699949999999


No 46 
>PRK00523 hypothetical protein; Provisional
Probab=25.66  E-value=41  Score=13.26  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             269999999864455899999999996175438999899999
Q gi|255764465|r  283 PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLL  324 (382)
Q Consensus       283 pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l  324 (382)
                      -+.+||+++|++|-.+|.|..-....|--. +-| .++-.++
T Consensus         6 ~iglgiil~li~G~~~Gff~ark~~~k~lk-~NP-PI~E~mi   45 (73)
T PRK00523          6 ILGLGIPLSLIVGGIIGYFVSKKYFKKQLR-ENP-PITENQI   45 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-CCCHHHH
T ss_conf             659989999999999999999999999886-685-9999999


No 47 
>pfam04796 RepA_C Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.
Probab=23.07  E-value=32  Score=13.86  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=41.9

Q ss_pred             HHHCCCCCCCCCHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             8512632467647873-10269999999864-45589999999999617543899989999
Q gi|255764465|r  265 FVNTGLTISTIPYTDI-SDPIVWGVMLGLFL-GKQSGIFLFAFSTVKIGWGKLPKDTNWCL  323 (382)
Q Consensus       265 faNaGV~l~~~~~~~~-~~pv~~gI~~gL~i-GK~lGI~~~s~lavkl~~~~lP~g~~w~~  323 (382)
                      +...-|.++..-+..+ .+||++-.-.=--+ |.|.-+=..+|++.|+...+.|.-+.|.|
T Consensus       101 lw~s~v~LSe~Ff~~l~~hpVPlD~ralraL~~Sp~ALDiY~WLtyRl~~l~~~~~i~W~q  161 (161)
T pfam04796       101 LWESTVTLSEEFFESLVDHPVPLDLRALRALNGSPLALDLYTWLTYRLHYLNRNVTITWDQ  161 (161)
T ss_pred             CCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf             6554489789999999858887569999987078077889999999998616981167789


No 48 
>pfam02529 PetG Cytochrome B6-F complex subunit 5. This family consists of cytochrome B6-F complex subunit 5 (PetG). The cytochrome bf complex found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase. PetG or subunit 5 is associated with the bf complex and the absence of PetG affects either the assembly or stability of the cytochrome bf complex in Chlamydomonas reinhardtii.
Probab=20.95  E-value=50  Score=12.70  Aligned_cols=30  Identities=30%  Similarity=0.662  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             026999999986445589999999999617
Q gi|255764465|r  282 DPIVWGVMLGLFLGKQSGIFLFAFSTVKIG  311 (382)
Q Consensus       282 ~pv~~gI~~gL~iGK~lGI~~~s~lavkl~  311 (382)
                      +|+--||++||+-=...|.|..+|+--|.+
T Consensus         3 Epll~GIVLGlipvTlaGLfv~Ay~QYrRg   32 (37)
T pfam02529         3 EPLLSGIVLGLIPVTLAGLFVAAYLQYRRG   32 (37)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             126530201005788999999999998303


Done!