HHsearch alignment for GI: 255764465 and conserved domain: pfam00999
>pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
Probab=99.39 E-value=2.9e-09 Score=74.27 Aligned_cols=296 Identities=19% Similarity=0.186 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCCC--CCCEEEEECCC
Q ss_conf 9998767999999999999999986486789999899999987788999999-----8982379800--03504553377
Q gi|255764465|r 52 RDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACI-----YMIINCHTEI--YLKGWAIPTAT 124 (382)
Q Consensus 52 ~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pali-----y~~~n~~~~~--~~~GWaIP~AT 124 (382)
T Consensus 48 ~~~l~~lgl~~llF~~Gl~l~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ls~t 121 (371)
T pfam00999 48 LEVLAELGLPFLLFLAGLELDLRELR------KNGKSILLLALLGVLLPFLLIGLLLALLGGLGIPLLEALLFGAALSAT 121 (371)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999999999999999789999999------855799999999999999999999999998476589999999999702
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CC--CCHHHHHHHHHHH-----H-------HHH
Q ss_conf 37899999998427888999999999998754479988886417---76--6679999999999-----9-------999
Q gi|255764465|r 125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT---QS--LNLFALQVAITLI-----F-------LLF 187 (382)
Q Consensus 125 DiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs---~~--i~~~~L~~a~~~~-----~-------~l~ 187 (382)
T Consensus 122 s~~vv~~il~~~-~~~~~~~~~~~l~~~~~~D~~~iil~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (371)
T pfam00999 122 SPVVVLAILKER-GRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLR 200 (371)
T ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 288998878751-6677599999999999986999999999999971775157999999999999999999999999999
Q ss_pred HHHHCCCCC--HHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 986259861--23789--99999999997128656789888863176787778940000378876342044324787999
Q gi|255764465|r 188 LLNRCGFTN--LFIYG--FLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAF 263 (382)
Q Consensus 188 ~l~~~~v~~--~~~y~--~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlF 263 (382)
T Consensus 201 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~---------~~~~~~~~~~~~~~~~~p~f 271 (371)
T pfam00999 201 LITRFTSGDRELEVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAF---------ANELSEKLEPFGYGLFLPLF 271 (371)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHHHHHHHH
T ss_conf 999970465079999999999999999863362168999999999647762---------06799999999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88512632467647873102699999998644558999999999961754389998999999999987558999999866
Q gi|255764465|r 264 VFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTL 343 (382)
Q Consensus 264 AfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~ 343 (382)
T Consensus 272 -F~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~l~~g~~l~~rg~~~l~la~ 339 (371)
T pfam00999 272 -FVLVGLSLDLSLLLSL-LLLVLLLLVAILLGKLLGVFLLARLL----------GLSLREALIVGFGGLQRGAVSLALAA 339 (371)
T ss_pred -HHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999987268878889-99999999999999999999999990----------99888999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 406872578876559999999999999999994
Q gi|255764465|r 344 QAFPNANNLQEKAKIGIILSSVISIIYAYLVFK 376 (382)
Q Consensus 344 LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~ 376 (382)
T Consensus 340 ~~~~~~-~i~~~~~~~~v~~~l~t~~i~P~l~k 371 (371)
T pfam00999 340 IGLQLG-LIDRELYTLLVAVVLLTTLLKPLLKK 371 (371)
T ss_pred HHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999879-99988999999999999999998629