HHsearch alignment for GI: 255764465 and conserved domain: pfam00999

>pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
Probab=99.39  E-value=2.9e-09  Score=74.27  Aligned_cols=296  Identities=19%  Similarity=0.186  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCCC--CCCEEEEECCC
Q ss_conf             9998767999999999999999986486789999899999987788999999-----8982379800--03504553377
Q gi|255764465|r   52 RDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACI-----YMIINCHTEI--YLKGWAIPTAT  124 (382)
Q Consensus        52 ~~wvNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmi~Pali-----y~~~n~~~~~--~~~GWaIP~AT  124 (382)
T Consensus        48 ~~~l~~lgl~~llF~~Gl~l~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ls~t  121 (371)
T pfam00999        48 LEVLAELGLPFLLFLAGLELDLRELR------KNGKSILLLALLGVLLPFLLIGLLLALLGGLGIPLLEALLFGAALSAT  121 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             99999999999999999789999999------855799999999999999999999999998476589999999999702


Q ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CC--CCHHHHHHHHHHH-----H-------HHH
Q ss_conf             37899999998427888999999999998754479988886417---76--6679999999999-----9-------999
Q gi|255764465|r  125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYT---QS--LNLFALQVAITLI-----F-------LLF  187 (382)
Q Consensus       125 DiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs---~~--i~~~~L~~a~~~~-----~-------~l~  187 (382)
T Consensus       122 s~~vv~~il~~~-~~~~~~~~~~~l~~~~~~D~~~iil~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T pfam00999       122 SPVVVLAILKER-GRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLR  200 (371)
T ss_pred             CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             288998878751-6677599999999999986999999999999971775157999999999999999999999999999


Q ss_pred             HHHHCCCCC--HHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             986259861--23789--99999999997128656789888863176787778940000378876342044324787999
Q gi|255764465|r  188 LLNRCGFTN--LFIYG--FLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAF  263 (382)
Q Consensus       188 ~l~~~~v~~--~~~y~--~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlF  263 (382)
T Consensus       201 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~lgaf~aGl~l~~~~~---------~~~~~~~~~~~~~~~~~p~f  271 (371)
T pfam00999       201 LITRFTSGDRELEVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAF---------ANELSEKLEPFGYGLFLPLF  271 (371)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHHHHHHHH
T ss_conf             999970465079999999999999999863362168999999999647762---------06799999999999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88512632467647873102699999998644558999999999961754389998999999999987558999999866
Q gi|255764465|r  264 VFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTL  343 (382)
Q Consensus       264 AfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~  343 (382)
T Consensus       272 -F~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~l~~g~~l~~rg~~~l~la~  339 (371)
T pfam00999       272 -FVLVGLSLDLSLLLSL-LLLVLLLLVAILLGKLLGVFLLARLL----------GLSLREALIVGFGGLQRGAVSLALAA  339 (371)
T ss_pred             -HHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -9999987268878889-99999999999999999999999990----------99888999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             406872578876559999999999999999994
Q gi|255764465|r  344 QAFPNANNLQEKAKIGIILSSVISIIYAYLVFK  376 (382)
Q Consensus       344 LAF~~~~~~~~~aKlgIL~~S~~aailG~~~l~  376 (382)
T Consensus       340 ~~~~~~-~i~~~~~~~~v~~~l~t~~i~P~l~k  371 (371)
T pfam00999       340 IGLQLG-LIDRELYTLLVAVVLLTTLLKPLLKK  371 (371)
T ss_pred             HHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999879-99988999999999999999998629