RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA [Candidatus Liberibacter asiaticus str. psy62] (382 letters) >gnl|CDD|32821 COG3004, NhaA, Na+/H+ antiporter [Inorganic ion transport and metabolism]. Length = 390 Score = 309 bits (792), Expect = 1e-84 Identities = 166/387 (42%), Positives = 235/387 (60%), Gaps = 15/387 (3%) Query: 5 KFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVN 56 + FL + GILLI + +++AN + S +Y FD L + N +L W+N Sbjct: 9 RRFLKSEAAGGILLIIAAALALLVANSALSESY-FDFLHTPVGVRVGDLSINKSLLLWIN 67 Query: 57 DILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLK 116 D LM ++F +IGLE+K EL+ G+LSSW + P++ AIGG+ PA IY+ +N L+ Sbjct: 68 DGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLALNAGDPATLE 127 Query: 117 GWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFAL 176 GWAIP ATDIAF LG+L+ +G +P SLKIF AL +IDD AI I+A+FYT L++ AL Sbjct: 128 GWAIPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTTDLSMAAL 187 Query: 177 QVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLP-DIKNY 235 +A I +L +LNR G L Y +G LW ++ KSG+H T+ GVI+A +P K Sbjct: 188 GIAALAIAVLAVLNRLGVRRLSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEG 247 Query: 236 HSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLG 295 SP R L L WV +LP F F N G+++ + + ++ P+ G++LGLFLG Sbjct: 248 ESPLER-----LEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSPLTLGIILGLFLG 302 Query: 296 KQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEK 355 K GIFLF++ VK+ KLP+ +W +YG SILCGIGFTMSLF+ AF + + LQ Sbjct: 303 KPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSEDELQTA 362 Query: 356 AKIGIILSSVISIIYAYLVFKIPLRKK 382 AK+GI++ S IS I Y ++ L + Sbjct: 363 AKLGILVGSFISAILGYSYLRLLLPRS 389 >gnl|CDD|35424 KOG0203, KOG0203, KOG0203, Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]. Length = 1019 Score = 31.8 bits (72), Expect = 0.35 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 6/48 (12%) Query: 321 WCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISI 368 LL+ G+ILC + + + + + P+ +NL +GI+L++V+ + Sbjct: 97 SILLWIGAILCFVAY--GIQASTEDDPSDDNLY----LGIVLAAVVIV 138 >gnl|CDD|37176 KOG1965, KOG1965, KOG1965, Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]. Length = 575 Score = 30.3 bits (68), Expect = 0.86 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 16/144 (11%) Query: 119 AIPTATDIAFTLGILSWI-GPNIPSSLKIFFTALTMIDDFSA---IAIMAIF--YTQSLN 172 AI A +G ++ G + F L SA + ++AIF Sbjct: 133 AIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGVDPK 192 Query: 173 LFAL---------QVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGV 223 L+ L V+I L + + + +G FL+ G+ G+ Sbjct: 193 LYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGL-GVAIGL 251 Query: 224 IMALLLPDIKNYHSPSNRISFYLL 247 I AL+L + +PS + LL Sbjct: 252 ISALVLKFLYLRRTPSLESALMLL 275 >gnl|CDD|33185 COG3378, COG3378, Predicted ATPase [General function prediction only]. Length = 517 Score = 28.4 bits (63), Expect = 3.6 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 7/58 (12%) Query: 23 FITMILANISFSSAYYFDALEYKIANLTLRDWVNDI-------LMILYFFMIGLELKH 73 F+ + + A EYK N + + +D F I LEL Sbjct: 387 FLDLQREGLDQPQAVLDALEEYKRENDPVFQFCDDECVLGETDGTPTAFDNIVLELYE 444 >gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]. Length = 835 Score = 27.6 bits (61), Expect = 5.2 Identities = 50/316 (15%), Positives = 103/316 (32%), Gaps = 39/316 (12%) Query: 23 FITMILANISFSSAYYFDALEYKIANLTLRDWVNDILMILYFFMIGLELKHELIHGELSS 82 ++ ++ + L +A+ L V L I+ + L L + Sbjct: 361 LRRGLVRSLGAINPLLGAPLVLTVADDGLASDVIGQLGIIAALLAPALLVARLKDAAWRA 420 Query: 83 WTKR-SLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIP 141 + + + +L A A + + + L+ + L IL + + Sbjct: 421 YPRLLLITVLSAAPLALIVAALTGYLYTALFLALRLVVTVAILFTWYVLYILRGLSVSAR 480 Query: 142 SSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYG 201 A + + + + +A+ L +++ + LI + +L G I Sbjct: 481 RLAFARALAGRALAEEAELVEVALDQIGLQLLRLIRLLLLLIAIPLVLYVWGSYLEDITL 540 Query: 202 FLGFFLWHSIFKSGIHT-TVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVL 260 + +L + G+ + T+ ++ A+LL + Y+L L W+ VL Sbjct: 541 W--AYLGTTGGVLGVESITLGALLQAVLL-----------FLITYVLTRNLPGWLEVRVL 587 Query: 261 PAFVF-VNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDT 319 T +I+T+ G +L G L ST+ I L Sbjct: 588 QRLDLDAGTRYSITTLL----------GYLLIAIGG------LVGLSTLGIDLSSLQ--- 628 Query: 320 NWCLLYGGSILCGIGF 335 G++ G+GF Sbjct: 629 ----WLAGALSVGLGF 640 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.146 0.459 Gapped Lambda K H 0.267 0.0653 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,938,802 Number of extensions: 289599 Number of successful extensions: 1240 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1216 Number of HSP's successfully gapped: 179 Length of query: 382 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 286 Effective length of database: 4,189,273 Effective search space: 1198132078 Effective search space used: 1198132078 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 58 (26.3 bits)