RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA
[Candidatus Liberibacter asiaticus str. psy62]
         (382 letters)



>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A
           {Escherichia coli} PDB: 3fi1_A (A:)
          Length = 388

 Score = 69.5 bits (169), Expect = 7e-13
 Identities = 139/379 (36%), Positives = 213/379 (56%), Gaps = 13/379 (3%)

Query: 13  FTGILLISTTFITMILANISFSSAYYFDALEY--------KIANLTLRDWVNDILMILYF 64
             GI+LI    + MI+AN   +S +Y D LE            N  +  W+ND LM ++F
Sbjct: 13  SGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNMLLWINDALMAVFF 72

Query: 65  FMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTAT 124
            ++GLE+K EL+ G L+S  + + P++ AIGG+  PA +Y+  N    I  +GWAIP AT
Sbjct: 73  LLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAIPAAT 132

Query: 125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIF 184
           DIAF LG+L+ +G  +P +LKIF  AL +IDD  AI I+A+FYT  L++ +L VA   I 
Sbjct: 133 DIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLSMASLGVAAVAIA 192

Query: 185 LLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISF 244
           +L +LN CG     +Y  +G  LW ++ KSG+H T+ GVI+   +P  + +     +   
Sbjct: 193 VLAVLNLCGARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKR-- 250

Query: 245 YLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFA 304
             L   L  WV  L+LP F F N G+++  +    ++  +  G++ GL +GK  GI LF 
Sbjct: 251 --LEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFC 308

Query: 305 FSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFL-TLQAFPNANNLQEKAKIGIILS 363
           +  +++    LP+ T +  +    ILCGIGFTMS+F+ +L        L   AK+GI++ 
Sbjct: 309 WLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVG 368

Query: 364 SVISIIYAYLVFKIPLRKK 382
           S+ S +  Y   ++ LR  
Sbjct: 369 SISSAVIGYSWLRVRLRPS 387


>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
           hydroxylase, oxidoreductase; HET: FAD; 1.80A
           {Streptomyces SP} (A:1-47,A:104-181,A:267-353)
          Length = 212

 Score = 33.5 bits (76), Expect = 0.041
 Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 1/58 (1%)

Query: 201 GFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPL 258
           G  G  L   +  +G+   V    +    P            +           V+ L
Sbjct: 20  GPAGMMLAGELRLAGVEVVVL-ERLVERTPQSVTETHLEQWATGLGADIRRGHEVLSL 76


>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
           structural genomics, PSI, protein structure initiative;
           2.20A {Staphylococcus aureus subsp} (A:)
          Length = 265

 Score = 26.5 bits (57), Expect = 5.9
 Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 1/134 (0%)

Query: 44  YKIANLTLRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACI 103
                +  R+   D + IL                            L     +  P   
Sbjct: 122 KLPIIIHNREATQDCIDILLEEHAEEVGGIXHSFSGSPEIADIVTNKLNFYISLGGPVTF 181

Query: 104 YMIINCHTEIYLKGWAIPTATDIAFTLGILSWIG-PNIPSSLKIFFTALTMIDDFSAIAI 162
                                  A  L    + G  N P+ + +    +  +   S   +
Sbjct: 182 KNAKQPKEVAKHVSXERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEEV 241

Query: 163 MAIFYTQSLNLFAL 176
                  +  LF L
Sbjct: 242 CEQTTKNAEKLFNL 255


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,883,111
Number of extensions: 126054
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 21
Length of query: 382
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 292
Effective length of database: 1,913,599
Effective search space: 558770908
Effective search space used: 558770908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.3 bits)