RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA
[Candidatus Liberibacter asiaticus str. psy62]
         (382 letters)



>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli}
           PDB: 3fi1_A
          Length = 388

 Score =  289 bits (740), Expect = 9e-79
 Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 15/385 (3%)

Query: 7   FLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVNDI 58
           F   D   GI+LI    + MI+AN   +S +Y D LE  +         N  +  W+ND 
Sbjct: 7   FFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNMLLWINDA 66

Query: 59  LMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGW 118
           LM ++F ++GLE+K EL+ G L+S  + + P++ AIGG+  PA +Y+  N    I  +GW
Sbjct: 67  LMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGW 126

Query: 119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQV 178
           AIP ATDIAF LG+L+ +G  +P +LKIF  AL +IDD  AI I+A+FYT  L++ +L V
Sbjct: 127 AIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLSMASLGV 186

Query: 179 AITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNY-HS 237
           A   I +L +LN CG     +Y  +G  LW ++ KSG+H T+ GVI+   +P  + +  S
Sbjct: 187 AAVAIAVLAVLNLCGARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRS 246

Query: 238 PSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQ 297
           P+ R     L   L  WV  L+LP F F N G+++  +    ++  +  G++ GL +GK 
Sbjct: 247 PAKR-----LEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKP 301

Query: 298 SGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNAN-NLQEKA 356
            GI LF +  +++    LP+ T +  +    ILCGIGFTMS+F+   AF + +  L   A
Sbjct: 302 LGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWA 361

Query: 357 KIGIILSSVISIIYAYLVFKIPLRK 381
           K+GI++ S+ S +  Y   ++ LR 
Sbjct: 362 KLGILVGSISSAVIGYSWLRVRLRP 386


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 59/316 (18%), Positives = 98/316 (31%), Gaps = 128/316 (40%)

Query: 38  YFDALE--YKIANLTLRDWVNDIL----MIL-----------YFFMIGLELKHELIHGE- 79
           YF+ L   Y+    T    V D++      L             F  GL +   L +   
Sbjct: 169 YFEELRDLYQ----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224

Query: 80  ------LSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGIL 133
                 L S    S PL   IG I      Y++                       LG  
Sbjct: 225 TPDKDYLLS-IPISCPL---IGVIQL--AHYVVT-AKL------------------LG-F 258

Query: 134 SWIGPNIPSSLKIFFTALT-----MIDDFSAIAI-MAI----FYTQSLNLFALQVAITLI 183
           +      P  L+ +    T     ++   +A+AI        F+           AIT++
Sbjct: 259 T------PGELRSYLKGATGHSQGLV---TAVAIAETDSWESFFVSVRK------AITVL 303

Query: 184 FLLFLLNRC--GFTNLFIYGFLGFFLWHSIFKS------GIHT---TVFGVIMALLLPDI 232
           F  F+  RC   + N          L  SI +       G+ +   ++  +    +   +
Sbjct: 304 F--FIGVRCYEAYPNTS--------LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353

Query: 233 K--NYHSPSNR---ISFYLLGDGLKSWVM---PLVLPAF------VFVNTGLTISTIPYT 278
              N H P+ +   IS   L +G K+ V+   P  L             +GL  S IP++
Sbjct: 354 NKTNSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410

Query: 279 D-----------ISDP 283
           +           ++ P
Sbjct: 411 ERKLKFSNRFLPVASP 426



 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 60/399 (15%), Positives = 103/399 (25%), Gaps = 155/399 (38%)

Query: 19  ISTTFITMILANISFS----SAYYFDALEYKIANLTLRDWVNDILMILYFFMIGL-ELKH 73
            ST  +T+   ++       +A +F A         L++           F   L E   
Sbjct: 4   YSTRPLTLSHGSLEHVLLVPTASFFIAS-------QLQE----------QFNKILPEPTE 46

Query: 74  ELIHG-ELSSWTKRSLPLLGA-IGGI----------TFPACIYMIINCHTEIYLKGWAIP 121
                 E ++       L+G  +G +           F   + + +      YL+G    
Sbjct: 47  GFAADDEPTT----PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---- 98

Query: 122 TATDI-AFTLGILSWIGPNIPSS---LKIFFTALTMIDD----------FSAIA-----I 162
              DI A    +L      +  +   +K + TA  M             F A+      +
Sbjct: 99  --NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156

Query: 163 MAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLF-IY----GFLGFFLWHSIFKSGIH 217
           +AIF  Q                    +   F  L  +Y      +G           I 
Sbjct: 157 VAIFGGQGNT-----------------DDY-FEELRDLYQTYHVLVGDL---------IK 189

Query: 218 TTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPY 277
                   A  L ++    +  +    +  G  +  W   L  P           S  P 
Sbjct: 190 F------SAETLSEL--IRTTLDAEKVFTQGLNILEW---LENP-----------SNTPD 227

Query: 278 TD------ISDPI--------------VWGV----MLGLFLG----KQSGIFLFAFSTVK 309
            D      IS P+              + G     +     G     Q G+         
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAET 286

Query: 310 IGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPN 348
             W          +    ++L  IG         +A+PN
Sbjct: 287 DSWESFFVSVRKAI----TVLFFIGVR-----CYEAYPN 316


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 9/27 (33%)

Query: 140 IPSSLKIFFTALTMIDDFS--AIAIMA 164
           + +SLK++  A     D S  A+AI A
Sbjct: 25  LQASLKLY--A-----DDSAPALAIKA 44


>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage
           sensor, voltage dependent, ION channel, shaker, membrane
           protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
           2a79_B*
          Length = 514

 Score = 28.3 bits (62), Expect = 3.1
 Identities = 32/255 (12%), Positives = 76/255 (29%), Gaps = 20/255 (7%)

Query: 104 YMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIM 163
            +     +    +  AI +   I  +  I+S+    +P               F   +  
Sbjct: 170 LLFEYPESSGPARIIAIVSVMVILIS--IVSFCLETLPIFRDENEDMHGGGVTFHTYSQS 227

Query: 164 AIFYTQSLN----LFALQVAITLIF-------LLFLLNRCGF----TNLF-IYGFLGFFL 207
            I Y QS +     F ++    + F            ++ GF     N+  I   + +++
Sbjct: 228 TIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYV 287

Query: 208 WHSIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVN 267
              + +S      F  +  ++            ++S +  G  +    +   +     + 
Sbjct: 288 TIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLI 347

Query: 268 TGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGG 327
             L I  I ++              F       +    S   +G+G +   T    + G 
Sbjct: 348 FFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGS 407

Query: 328 -SILCGIGFTMSLFL 341
              + G+   ++L +
Sbjct: 408 LCAIAGVLT-IALPV 421


>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
           crystallography, sulfhydrylase; HET: LLP; 1.55A
           {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 1fcj_A*
           1oas_A* 1d6s_A*
          Length = 316

 Score = 27.6 bits (60), Expect = 5.6
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 51  LRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCH 110
           ++      +  +    +   +  + + GE        +     IG    P  + + I   
Sbjct: 189 IKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQ---GIGAGFIPKNLDLSIIDR 245

Query: 111 TEIYLKGWAIPTATDIAFTLGIL 133
            E      A+ TA  +    GIL
Sbjct: 246 VETVDSDTALATARRLMAEEGIL 268


>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex,
           designed ankyrin repeat protein, multidrug resistance
           protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB:
           2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A
           2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A
           2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ...
          Length = 1055

 Score = 26.7 bits (58), Expect = 8.9
 Identities = 13/160 (8%), Positives = 42/160 (26%), Gaps = 1/160 (0%)

Query: 70  ELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFT 129
           ++ +          +   +        I     +Y+ +       +   A+P      F 
Sbjct: 322 KIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFA 381

Query: 130 LGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLL 189
           +        N   ++     A+ ++ D + + +  +    +      + A          
Sbjct: 382 VLAAFGFSINTL-TMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQG 440

Query: 190 NRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLL 229
              G   +    F+    +     +        ++ A+ L
Sbjct: 441 ALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,305,613
Number of extensions: 149332
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 35
Length of query: 382
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 288
Effective length of database: 3,414,294
Effective search space: 983316672
Effective search space used: 983316672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.1 bits)