Query gi|255764466|ref|YP_003064779.2| hypothetical protein CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 174
No_of_seqs 110 out of 666
Neff 6.7
Searched_HMMs 33803
Date Wed Jun 1 12:22:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764466.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zuq_A Disulfide bond formati 100.0 2.9E-36 8.7E-41 236.4 9.5 168 1-174 1-168 (176)
2 >3kp9_A Vkorc1/thioredoxin dom 93.5 0.12 3.6E-06 28.8 4.5 22 142-163 66-87 (185)
3 >1wwr_A TRNA adenosine deamina 57.3 3.5 0.0001 20.0 0.7 11 36-46 97-107 (171)
4 >2b3j_A TRNA adenosine deamina 53.1 3.8 0.00011 19.8 0.3 12 35-46 80-91 (159)
5 >1vq2_A DCMP deaminase, deoxyc 52.8 3.8 0.00011 19.8 0.3 10 36-45 71-80 (137)
6 >3dh1_A TRNA-specific adenosin 48.7 4.9 0.00015 19.1 0.3 10 36-45 106-115 (189)
7 >2w4l_A DCMP deaminse, deoxycy 48.4 4.9 0.00015 19.1 0.3 11 36-46 102-112 (178)
8 >2nx8_A TRNA-specific adenosin 48.2 5.1 0.00015 19.0 0.3 12 35-46 89-100 (179)
9 >2g84_A Cytidine and deoxycyti 47.0 5.3 0.00016 18.9 0.3 12 35-46 108-119 (197)
10 >1z3a_A TRNA-specific adenosin 45.2 5.9 0.00018 18.6 0.3 11 35-45 82-92 (168)
11 >1p6o_A Cytosine deaminase; hy 43.5 6.5 0.00019 18.4 0.3 12 35-46 88-99 (161)
12 >2hxv_A Diaminohydroxyphosphor 41.9 6.8 0.0002 18.2 0.2 10 36-45 90-99 (154)
13 >2b3z_A Riboflavin biosynthesi 35.3 10 0.0003 17.2 0.2 10 37-46 88-97 (146)
No 1
>>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A 2k74_A* (A:)
Probab=100.00 E-value=2.9e-36 Score=236.37 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 96899999642169999999999999999999995278870557998999999999999999972011111012259999
Q gi|255764466|r 1 MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLSTRNHNSYWSTRLLLMT 80 (174)
Q Consensus 1 m~~~~~~~~~~~~l~li~~l~~~~ll~~A~~~qy~~gl~PC~LCi~QR~py~~~i~i~l~~~l~~~~~~~~~~~~~~~~~ 80 (174)
|++++++....+....+..+.+.++++.|+|+||++|++|||||++||+||+.++++++++.+.++ +...+.....
T Consensus 1 m~~~l~~~~~~r~~~~l~~l~~~~~l~~A~~~q~~~~~~PC~LCi~QR~~~~~~~~~~ll~~~~~~----~~~~~~~~~l 76 (176)
T 2zuq_A 1 MLRFLNQASQGRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGAIAPK----TPLRYVAMVI 76 (176)
T ss_dssp ---------CCSHHHHHHHHHTHHHHHHHHHHHHTSCCCCCTTHHHHHHHHHHHHHHHHHHHSSCC----SSTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHH
T ss_conf 978999889886999999999999999999999981898747599999999999999999998121----0389999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999998658875000101122223431000265889999842899984710033210146889999999999
Q gi|255764466|r 81 LGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSCNKTTLYVLGLSLAFWNIIVSFFLS 160 (174)
Q Consensus 81 ~~l~~~~g~~ia~yH~giE~~~~~~~~~C~~~~~~~~~~~~~~l~~~l~~~~~~~C~ev~w~flGlSma~wn~i~~~~l~ 160 (174)
..+.++.|+++|.||+|+|+++|+++..| +.....+..+.+++.+. ...+.++|||++|+|+|+|||+||+++|++++
T Consensus 77 ~~~~a~~G~~~a~~h~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~C~~~~~~~lGlsm~~ws~i~f~~~~ 154 (176)
T 2zuq_A 77 WLYSAFRGVQLTYEHTMLQLYPSPFATCD-FMVRFPEWLPLDKWVPQ-VFVASGDCAERQWDFLGLEMPQWLLGIFIAYL 154 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSSCCCC-CCC-----CCSSTTCST-TTCCCCCCCSCCCCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHH-HHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999983235566676-21134332779999888-30689885544536445579999999999999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999420379
Q gi|255764466|r 161 FITSIAMLKISRKK 174 (174)
Q Consensus 161 ~i~~~~~~~~~kkk 174 (174)
+++....+|..|++
T Consensus 155 ~~~~~~~~~~~~~~ 168 (176)
T 2zuq_A 155 IVAVLVVISQPFKA 168 (176)
T ss_dssp HHHTTTTC------
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999987533
No 2
>>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreductase, blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} (A:1-185)
Probab=93.48 E-value=0.12 Score=28.76 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=10.2
Q ss_pred HHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 3210146889999999999999
Q gi|255764466|r 142 YVLGLSLAFWNIIVSFFLSFIT 163 (174)
Q Consensus 142 ~flGlSma~wn~i~~~~l~~i~ 163 (174)
+++|+..+.+.++.+.....+.
T Consensus 66 ~~fGiP~s~~G~~~y~~~l~l~ 87 (185)
T 3kp9_A 66 EFLGIPTAAVGLLGFLGVLALA 87 (185)
T ss_dssp EETTEEHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHH
T ss_conf 7549973899999999999999
No 3
>>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} (A:)
Probab=57.35 E-value=3.5 Score=19.95 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=8.0
Q ss_pred HCCCCHHHHHH
Q ss_conf 27887055799
Q gi|255764466|r 36 GGYPPCDLCIQ 46 (174)
Q Consensus 36 ~gl~PC~LCi~ 46 (174)
--+|||++|..
T Consensus 97 tT~EPC~mC~~ 107 (171)
T 1wwr_A 97 VTLEPCIMCSY 107 (171)
T ss_dssp ESSCCBHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 03578807888
No 4
>>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} (A:)
Probab=53.06 E-value=3.8 Score=19.80 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.5
Q ss_pred HHCCCCHHHHHH
Q ss_conf 527887055799
Q gi|255764466|r 35 VGGYPPCDLCIQ 46 (174)
Q Consensus 35 ~~gl~PC~LCi~ 46 (174)
+--+|||++|..
T Consensus 80 y~T~EPC~mC~~ 91 (159)
T 2b3j_A 80 YVTLEPCVMCAG 91 (159)
T ss_dssp EEEECCCHHHHH
T ss_pred EEECCCHHHHHH
T ss_conf 652475166788
No 5
>>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} (A:1-45,A:102-193)
Probab=52.83 E-value=3.8 Score=19.76 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=7.7
Q ss_pred HCCCCHHHHH
Q ss_conf 2788705579
Q gi|255764466|r 36 GGYPPCDLCI 45 (174)
Q Consensus 36 ~gl~PC~LCi 45 (174)
-.+|||++|.
T Consensus 71 vTlEPC~mCa 80 (137)
T 1vq2_A 71 VTLSPCPDCA 80 (137)
T ss_dssp EEECCCHHHH
T ss_pred ECCCCCHHHH
T ss_conf 0679967899
No 6
>>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens} (A:)
Probab=48.72 E-value=4.9 Score=19.09 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=7.3
Q ss_pred HCCCCHHHHH
Q ss_conf 2788705579
Q gi|255764466|r 36 GGYPPCDLCI 45 (174)
Q Consensus 36 ~gl~PC~LCi 45 (174)
--+|||++|-
T Consensus 106 tT~EPC~mCa 115 (189)
T 3dh1_A 106 VTVEPCIMCA 115 (189)
T ss_dssp EEECCBHHHH
T ss_pred CCCCCCHHHH
T ss_conf 1667776899
No 7
>>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} (A:)
Probab=48.44 E-value=4.9 Score=19.10 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=8.2
Q ss_pred HCCCCHHHHHH
Q ss_conf 27887055799
Q gi|255764466|r 36 GGYPPCDLCIQ 46 (174)
Q Consensus 36 ~gl~PC~LCi~ 46 (174)
-.+|||++|..
T Consensus 102 vT~ePC~mCa~ 112 (178)
T 2w4l_A 102 VALFPCNECAK 112 (178)
T ss_dssp EEECCCHHHHH
T ss_pred ECCCCHHHHHH
T ss_conf 75898799999
No 8
>>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} (A:)
Probab=48.24 E-value=5.1 Score=19.02 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=8.5
Q ss_pred HHCCCCHHHHHH
Q ss_conf 527887055799
Q gi|255764466|r 35 VGGYPPCDLCIQ 46 (174)
Q Consensus 35 ~~gl~PC~LCi~ 46 (174)
+..+|||++|..
T Consensus 89 Y~T~EPC~mC~~ 100 (179)
T 2nx8_A 89 FVTIEPCVMCSG 100 (179)
T ss_dssp EEEECCBHHHHH
T ss_pred ECCCCCCHHHHH
T ss_conf 125567817777
No 9
>>2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region; structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea atcc 19718} (A:)
Probab=46.99 E-value=5.3 Score=18.88 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=8.6
Q ss_pred HHCCCCHHHHHH
Q ss_conf 527887055799
Q gi|255764466|r 35 VGGYPPCDLCIQ 46 (174)
Q Consensus 35 ~~gl~PC~LCi~ 46 (174)
+--+|||++|..
T Consensus 108 Y~T~EPC~mC~~ 119 (197)
T 2g84_A 108 VTSAEPCVMCFG 119 (197)
T ss_dssp EEEECCCHHHHH
T ss_pred EECCCCCHHHHH
T ss_conf 820578646766
No 10
>>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} (A:)
Probab=45.16 E-value=5.9 Score=18.61 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.0
Q ss_pred HHCCCCHHHHH
Q ss_conf 52788705579
Q gi|255764466|r 35 VGGYPPCDLCI 45 (174)
Q Consensus 35 ~~gl~PC~LCi 45 (174)
+-.+|||++|.
T Consensus 82 y~T~EPC~mC~ 92 (168)
T 1z3a_A 82 YVTLEPCVMCA 92 (168)
T ss_dssp EEEECCCHHHH
T ss_pred EECCCCCHHHH
T ss_conf 30466625677
No 11
>>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} (A:)
Probab=43.49 E-value=6.5 Score=18.36 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=8.6
Q ss_pred HHCCCCHHHHHH
Q ss_conf 527887055799
Q gi|255764466|r 35 VGGYPPCDLCIQ 46 (174)
Q Consensus 35 ~~gl~PC~LCi~ 46 (174)
+..+|||++|..
T Consensus 88 y~t~EPC~mC~~ 99 (161)
T 1p6o_A 88 YTTLSPCDMCTG 99 (161)
T ss_dssp EEEECCCHHHHH
T ss_pred EEECCCCHHHHH
T ss_conf 960688799999
No 12
>>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} (A:1-154)
Probab=41.87 E-value=6.8 Score=18.24 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=6.7
Q ss_pred HCCCCHHHHH
Q ss_conf 2788705579
Q gi|255764466|r 36 GGYPPCDLCI 45 (174)
Q Consensus 36 ~gl~PC~LCi 45 (174)
--++||++|.
T Consensus 90 ~T~ePC~mCa 99 (154)
T 2hxv_A 90 DHHGKTPPCT 99 (154)
T ss_dssp CSCSSSCCHH
T ss_pred CCCCCCCHHH
T ss_conf 4355652066
No 13
>>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} (A:1-146)
Probab=35.29 E-value=10 Score=17.24 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=6.5
Q ss_pred CCCCHHHHHH
Q ss_conf 7887055799
Q gi|255764466|r 37 GYPPCDLCIQ 46 (174)
Q Consensus 37 gl~PC~LCi~ 46 (174)
-++||++|..
T Consensus 88 T~ePC~mCa~ 97 (146)
T 2b3z_A 88 HYGKTPPCAE 97 (146)
T ss_dssp CCSSSCCHHH
T ss_pred CCCCCCHHHH
T ss_conf 4677617789
Done!