Query gi|255764466|ref|YP_003064779.2| hypothetical protein CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 174
No_of_seqs 110 out of 666
Neff 6.7
Searched_HMMs 23785
Date Mon May 30 09:31:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764466.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zuq_A Disulfide bond formatio 100.0 7.8E-39 3.3E-43 250.9 9.6 168 1-174 1-168 (176)
2 3kp9_A Vkorc1/thioredoxin doma 88.9 0.52 2.2E-05 24.0 4.7 30 31-63 120-149 (291)
3 1wkq_A Guanine deaminase; doma 64.6 1.3 5.3E-05 21.7 0.3 11 36-46 86-96 (164)
4 1wwr_A TRNA adenosine deaminas 60.5 2 8.6E-05 20.5 0.7 12 35-46 96-107 (171)
5 2g84_A Cytidine and deoxycytid 59.8 1.7 7.3E-05 20.9 0.3 10 37-46 110-119 (197)
6 1p6o_A Cytosine deaminase; hyd 57.0 2.1 8.8E-05 20.4 0.3 12 35-46 88-99 (161)
7 2a8n_A Cytidine and deoxycytid 53.9 2.6 0.00011 19.9 0.3 11 35-45 77-87 (144)
8 3dh1_A TRNA-specific adenosine 52.3 2.8 0.00012 19.6 0.3 11 36-46 106-116 (189)
9 2nx8_A TRNA-specific adenosine 50.1 3.2 0.00013 19.3 0.3 11 35-45 89-99 (179)
10 2b3j_A TRNA adenosine deaminas 43.0 4.7 0.0002 18.3 0.3 10 36-45 81-90 (159)
11 1z3a_A TRNA-specific adenosine 37.5 6.5 0.00027 17.5 0.3 10 37-46 84-93 (168)
12 1vq2_A DCMP deaminase, deoxycy 27.0 12 0.00052 15.8 0.3 10 36-45 127-136 (193)
13 2hvw_A Deoxycytidylate deamina 23.0 16 0.00069 15.1 0.3 10 37-46 129-138 (184)
No 1
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A 2k74_A*
Probab=100.00 E-value=7.8e-39 Score=250.88 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 96899999642169999999999999999999995278870557998999999999999999972011111012259999
Q gi|255764466|r 1 MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLSTRNHNSYWSTRLLLMT 80 (174)
Q Consensus 1 m~~~~~~~~~~~~l~li~~l~~~~ll~~A~~~qy~~gl~PC~LCi~QR~py~~~i~i~l~~~l~~~~~~~~~~~~~~~~~ 80 (174)
|++-+.+....+..-+++++.++++++.|+|+||++|++|||||++||+||+.++++++++++.++ +...+.....
T Consensus 1 m~~~l~~~~~~R~~~ll~~l~s~~~l~~A~~~q~~~gl~PC~LCi~QR~~~~~i~~~~li~~~~~~----~~~~~~~~~~ 76 (176)
T 2zuq_A 1 MLRFLNQASQGRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALIGAIAPK----TPLRYVAMVI 76 (176)
T ss_dssp ---------CCSHHHHHHHHHTHHHHHHHHHHHHTSCCCCCTTHHHHHHHHHHHHHHHHHHHSSCC----SSTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHH
T ss_conf 978999889887999999999999999999999980888868699999999999999999998320----0489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999998658875000101122223431000265889999842899984710033210146889999999999
Q gi|255764466|r 81 LGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSCNKTTLYVLGLSLAFWNIIVSFFLS 160 (174)
Q Consensus 81 ~~l~~~~g~~ia~yH~giE~~~~~~~~~C~~~~~~~~~~~~~~l~~~l~~~~~~~C~ev~w~flGlSma~wn~i~~~~l~ 160 (174)
..+.++.|.++|.||+|+|+++++++. |++..+..+..+.+++.+.+.. +.++|||++|+|+|+|||+||+++|++++
T Consensus 77 ~~l~~~~g~~~a~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~C~e~~w~~lGlSma~wnli~~~~l~ 154 (176)
T 2zuq_A 77 WLYSAFRGVQLTYEHTMLQLYPSPFAT-CDFMVRFPEWLPLDKWVPQVFV-ASGDCAERQWDFLGLEMPQWLLGIFIAYL 154 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSSCC-CCCCC-----CCSSTTCSTTTC-CCCCCCSCCCCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCHHHHHHHHCC-CCCCCCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999999999999999817764434-5642244445789999888227-89884530088726679999999999999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999420379
Q gi|255764466|r 161 FITSIAMLKISRKK 174 (174)
Q Consensus 161 ~i~~~~~~~~~kkk 174 (174)
+++.+..++..+|+
T Consensus 155 ~~~~~~l~~~~~~~ 168 (176)
T 2zuq_A 155 IVAVLVVISQPFKA 168 (176)
T ss_dssp HHHTTTTC------
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999986334
No 2
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreductase, blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=88.94 E-value=0.52 Score=24.04 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=14.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999952788705579989999999999999999
Q gi|255764466|r 31 MIQHVGGYPPCDLCIQEQKIYYFGFLIALVADL 63 (174)
Q Consensus 31 ~~qy~~gl~PC~LCi~QR~py~~~i~i~l~~~l 63 (174)
|.|.+.--.-|+.|+.-- .+.+.+.++..+
T Consensus 120 ~i~~~~i~~~C~~Cl~sa---~i~~~l~~ls~~ 149 (291)
T 3kp9_A 120 YLMVAVLRQFCMYCTTAI---ILVAGLGLVTVL 149 (291)
T ss_dssp HHHHHTSCCCCHHHHHHH---HHHHHHHHHHHS
T ss_pred HHHHHHHCCCCHHHHHHH---HHHHHHHHHHHH
T ss_conf 999999688989999999---999999999996
No 3
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=64.65 E-value=1.3 Score=21.71 Aligned_cols=11 Identities=27% Similarity=0.993 Sum_probs=8.2
Q ss_pred HCCCCHHHHHH
Q ss_conf 27887055799
Q gi|255764466|r 36 GGYPPCDLCIQ 46 (174)
Q Consensus 36 ~gl~PC~LCi~ 46 (174)
--+|||++|.-
T Consensus 86 vT~EPC~mC~~ 96 (164)
T 1wkq_A 86 TSCEPCPMCLG 96 (164)
T ss_dssp EEECCCHHHHH
T ss_pred EECCCHHHHHH
T ss_conf 86684399999
No 4
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=60.48 E-value=2 Score=20.47 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=8.7
Q ss_pred HHCCCCHHHHHH
Q ss_conf 527887055799
Q gi|255764466|r 35 VGGYPPCDLCIQ 46 (174)
Q Consensus 35 ~~gl~PC~LCi~ 46 (174)
+.-+|||++|..
T Consensus 96 Y~TlEPC~mC~~ 107 (171)
T 1wwr_A 96 YVTLEPCIMCSY 107 (171)
T ss_dssp EESSCCBHHHHH
T ss_pred ECCCCCCHHHHH
T ss_conf 531587888999
No 5
>2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region; structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea atcc 19718} SCOP: c.97.1.2
Probab=59.84 E-value=1.7 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=8.1
Q ss_pred CCCCHHHHHH
Q ss_conf 7887055799
Q gi|255764466|r 37 GYPPCDLCIQ 46 (174)
Q Consensus 37 gl~PC~LCi~ 46 (174)
-+|||+||.-
T Consensus 110 T~EPC~MC~~ 119 (197)
T 2g84_A 110 SAEPCVMCFG 119 (197)
T ss_dssp EECCCHHHHH
T ss_pred ECCCCHHHHH
T ss_conf 3477888999
No 6
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=57.03 E-value=2.1 Score=20.42 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=8.8
Q ss_pred HHCCCCHHHHHH
Q ss_conf 527887055799
Q gi|255764466|r 35 VGGYPPCDLCIQ 46 (174)
Q Consensus 35 ~~gl~PC~LCi~ 46 (174)
+.-+|||++|..
T Consensus 88 yvTlEPC~mC~~ 99 (161)
T 1p6o_A 88 YTTLSPCDMCTG 99 (161)
T ss_dssp EEEECCCHHHHH
T ss_pred EECCCCCHHHHH
T ss_conf 852688799999
No 7
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=53.89 E-value=2.6 Score=19.88 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=8.0
Q ss_pred HHCCCCHHHHH
Q ss_conf 52788705579
Q gi|255764466|r 35 VGGYPPCDLCI 45 (174)
Q Consensus 35 ~~gl~PC~LCi 45 (174)
+..+|||++|.
T Consensus 77 y~t~EPC~mC~ 87 (144)
T 2a8n_A 77 YVTLEPCTMCA 87 (144)
T ss_dssp EEEECCBHHHH
T ss_pred CCCCCCCHHHH
T ss_conf 25678987899
No 8
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens}
Probab=52.28 E-value=2.8 Score=19.63 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=8.3
Q ss_pred HCCCCHHHHHH
Q ss_conf 27887055799
Q gi|255764466|r 36 GGYPPCDLCIQ 46 (174)
Q Consensus 36 ~gl~PC~LCi~ 46 (174)
-.++||++|..
T Consensus 106 tT~EPC~mCa~ 116 (189)
T 3dh1_A 106 VTVEPCIMCAA 116 (189)
T ss_dssp EEECCBHHHHH
T ss_pred ECCCCHHHHHH
T ss_conf 52488199999
No 9
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=50.12 E-value=3.2 Score=19.30 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=7.9
Q ss_pred HHCCCCHHHHH
Q ss_conf 52788705579
Q gi|255764466|r 35 VGGYPPCDLCI 45 (174)
Q Consensus 35 ~~gl~PC~LCi 45 (174)
+.-+|||++|.
T Consensus 89 yvTlEPC~mC~ 99 (179)
T 2nx8_A 89 FVTIEPCVMCS 99 (179)
T ss_dssp EEEECCBHHHH
T ss_pred ECCCCCCHHHH
T ss_conf 45768667999
No 10
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=42.96 E-value=4.7 Score=18.28 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=7.5
Q ss_pred HCCCCHHHHH
Q ss_conf 2788705579
Q gi|255764466|r 36 GGYPPCDLCI 45 (174)
Q Consensus 36 ~gl~PC~LCi 45 (174)
-.+|||++|.
T Consensus 81 ~t~EPC~mC~ 90 (159)
T 2b3j_A 81 VTLEPCVMCA 90 (159)
T ss_dssp EEECCCHHHH
T ss_pred ECCCCCHHHH
T ss_conf 0379968999
No 11
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2
Probab=37.54 E-value=6.5 Score=17.47 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=6.8
Q ss_pred CCCCHHHHHH
Q ss_conf 7887055799
Q gi|255764466|r 37 GYPPCDLCIQ 46 (174)
Q Consensus 37 gl~PC~LCi~ 46 (174)
.++|||+|.-
T Consensus 84 t~ePC~mC~~ 93 (168)
T 1z3a_A 84 TLEPCVMCAG 93 (168)
T ss_dssp EECCCHHHHH
T ss_pred CCCCCCCHHH
T ss_conf 6999733898
No 12
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=27.01 E-value=12 Score=15.78 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=6.7
Q ss_pred HCCCCHHHHH
Q ss_conf 2788705579
Q gi|255764466|r 36 GGYPPCDLCI 45 (174)
Q Consensus 36 ~gl~PC~LCi 45 (174)
--++||++|-
T Consensus 127 vt~~PC~~Ca 136 (193)
T 1vq2_A 127 VTLSPCPDCA 136 (193)
T ss_dssp EEECCCHHHH
T ss_pred CCCCCHHHHH
T ss_conf 4789659999
No 13
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=23.02 E-value=16 Score=15.05 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=5.9
Q ss_pred CCCCHHHHHH
Q ss_conf 7887055799
Q gi|255764466|r 37 GYPPCDLCIQ 46 (174)
Q Consensus 37 gl~PC~LCi~ 46 (174)
-++||+.|..
T Consensus 129 T~ePC~~Ca~ 138 (184)
T 2hvw_A 129 THFPCINCTK 138 (184)
T ss_dssp EECCCHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 7898599999
Done!