RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764466|ref|YP_003064779.2| hypothetical protein
CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62]
         (174 letters)



>gnl|CDD|145639 pfam02600, DsbB, Disulfide bond formation protein DsbB.  This
           family consists of disulfide bond formation protein DsbB
           from bacteria. The DsbB protein oxidizes the periplasmic
           protein DsbA which in turn oxidizes cysteines in other
           periplasmic proteins in order to make disulfide bonds.
           DsbB acts as a redox potential transducer across the
           cytoplasmic membrane and is an integral membrane
           protein. DsbB posses six cysteines four of which are
           necessary for it proper function in vivo.
          Length = 159

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 26  IVCFLMI------QHVGGYPPCDLCIQEQKIYYFGFLIALVADLSTRNHNSYWSTRLLLM 79
           +    ++      Q+V G  PC LCI ++       LI L+A L           RL L+
Sbjct: 16  LASLALLLGALYFQYVLGLEPCPLCIYQRIAMLALALIGLLALL----AGRRGRRRLALL 71

Query: 80  TLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSCNKT 139
              LL      I++ HVG++ G WE    C             + L Q+       C + 
Sbjct: 72  LALLLALAGAGIALYHVGLQAGPWEGPPSCGALEGFPDWLPLDEWLPQVFA-ATGDCAEV 130

Query: 140 TLYVLGLSLAFWNIIVSFFLSFITSIAML 168
               LGLS+  W+++    L+ +  + +L
Sbjct: 131 AWTFLGLSMPGWSLVAFLLLALLLLLLLL 159


>gnl|CDD|31684 COG1495, DsbB, Disulfide bond formation protein DsbB
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 170

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 17  IILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLSTRNHNSYWSTRL 76
           + LL ++  ++  L  Q++ G  PC LC+ ++   Y   +I L+A L             
Sbjct: 18  LALLGLALALLAALYFQYILGLEPCPLCLYQRIAMYGLGVILLLALL-------IGPLNR 70

Query: 77  LLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSC 136
           L +    L      + + H G    +        +          +     +  +   SC
Sbjct: 71  LRLYGLALALIGAGLGIYHAGEHVVLQLGPFATCSFGLTFPEWLPLGKWAPLVFQGTGSC 130

Query: 137 NK--TTLYVLGLSLAFWNIIVSFFLSFITSIAMLKISRKK 174
           ++      +LGLS+  W +++ F L  +  + + +  RKK
Sbjct: 131 SEPVAAWRLLGLSMPPWLLLIFFALLLLLLLLLFRKKRKK 170


>gnl|CDD|33647 COG3857, AddB, ATP-dependent nuclease, subunit B [DNA replication,
           recombination, and repair].
          Length = 1108

 Score = 28.0 bits (62), Expect = 1.6
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 18/89 (20%)

Query: 65  TRNHNSYWSTRLLLMTLGLLMFFNMTIS------VIHVGIECGIWEKNAICMNNSKIESI 118
              H   W+  + L+   + +F +  +S      ++H+G+E            + K   I
Sbjct: 501 AEEHEQVWNALIELLEEFVEVFGDEKLSLELFLEILHIGLE------------SLKFRLI 548

Query: 119 TSTVDLLTQMEQENIPSCNKTTLYVLGLS 147
            +T+D ++    + +    K  +Y +G++
Sbjct: 549 PATLDQVSIGSYDLVKPHTKKFVYAIGMN 577


>gnl|CDD|32691 COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase
           [Energy production and conversion].
          Length = 218

 Score = 27.1 bits (60), Expect = 2.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 139 TTLYVLGLSLAFWNIIVSFFLSFITSIAM 167
              Y  G  L FW  I++  L  IT I +
Sbjct: 107 VGKYNAGQKLLFWTAILAIVLLLITGIVI 135


>gnl|CDD|34013 COG4291, COG4291, Predicted membrane protein [Function unknown].
          Length = 228

 Score = 25.7 bits (56), Expect = 6.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 52  YFGFLIALVADLSTRNHNSYWSTRLLLMTLGLLMFFNMTISVIHVGIECGI 102
           YF F+I + A  S  N  +    R++L+   L  FFN  I    V    G+
Sbjct: 176 YFSFVIGMTAQTSDTNITTTAMRRVVLLHSILSFFFNTVIVAAAVNAAAGL 226


>gnl|CDD|144132 pfam00423, HN, Hemagglutinin-neuraminidase. 
          Length = 545

 Score = 25.4 bits (56), Expect = 9.2
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 75  RLLLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIP 134
            L+++ L L++   + I  IH         +N +    S  ESI   V  ++ +  E  P
Sbjct: 3   VLIVLLLSLIILIAIIIIRIHSATISTGEIQNILNTLLSITESIDHQVKDISSLISELTP 62


>gnl|CDD|145980 pfam03122, Herpes_MCP, Herpes virus major capsid protein.  This
           family represents the major capsid protein (MCP) of
           herpes viruses. The capsid shell consists of 150 MCP
           hexamers and 12 MCP pentamers. One pentamer is found at
           each of the 12 apices of the icosahedral shell, and the
           hexamers form the edges and 20 faces.
          Length = 1352

 Score = 25.3 bits (56), Expect = 9.9
 Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)

Query: 48  QKIYYFGFLIALVADLSTRNH 68
            KI+Y+  L A      T  H
Sbjct: 787 SKIFYYVVLPAF-----TNGH 802


>gnl|CDD|34893 COG5305, COG5305, Predicted membrane protein [Function unknown].
          Length = 552

 Score = 25.3 bits (55), Expect = 10.0
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 56  LIALVADLSTRNHNSYWSTRLLLMTLGLLMFFNMTISVIHVGIECGIWEKN 106
           L+  +   ++R     W    LL+ L LL  +   ++VI  G+   +W   
Sbjct: 184 LLRAIRLPTSRKLLPGWLIYALLLILSLLTHYFFALTVIAHGVYVLLWASL 234


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,064,925
Number of extensions: 103150
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 30
Length of query: 174
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,383,754
Effective search space: 381386598
Effective search space used: 381386598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.6 bits)