RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764466|ref|YP_003064779.2| hypothetical protein CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62] (174 letters) >2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A 2k74_A* Length = 176 Score = 69.3 bits (169), Expect = 4e-13 Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 6/158 (3%) Query: 17 IILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLSTRNHNSYWSTRL 76 ++ + + L QHV P LCI E+ + AL+ + Sbjct: 17 LMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALI----GAIAPKTPLRYV 72 Query: 77 LLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSC 136 ++ F + ++ H ++ E +D C Sbjct: 73 AMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPE--WLPLDKWVPQVFVASGDC 130 Query: 137 NKTTLYVLGLSLAFWNIIVSFFLSFITSIAMLKISRKK 174 + LGL + W + + + + ++ K Sbjct: 131 AERQWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKA 168 >2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} Length = 309 Score = 27.2 bits (60), Expect = 1.8 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 4/65 (6%) Query: 87 FNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSCNKTTLYVLGL 146 + + ++++ G+ECG + + ++I N+ C + G Sbjct: 247 YGVITNIVNGGLECGHGPDDRV---ANRIGFYQRYCGAFGIGTGGNL-DCYNQRPFNSGS 302 Query: 147 SLAFW 151 S+ Sbjct: 303 SVGLA 307 >3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} Length = 362 Score = 27.5 bits (60), Expect = 1.8 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%) Query: 10 ANIPLPRIILL-NISGVIVCFLMIQHVGGYPPCDLCIQEQK 49 A +P+P ++ + S + + + G DL E Sbjct: 91 AALPIPEVLDIGEFSESLTYCIS-RRAQGVTLQDLPETELP 130 >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Score = 25.5 bits (55), Expect = 6.7 Identities = 9/35 (25%), Positives = 14/35 (40%) Query: 1 MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHV 35 K++LS + P +L I G I F + Sbjct: 319 YAKTILSLMTREKHPDGKILIIGGSIANFTNVAAT 353 >2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A Length = 195 Score = 25.1 bits (55), Expect = 7.5 Identities = 5/37 (13%), Positives = 16/37 (43%) Query: 105 KNAICMNNSKIESITSTVDLLTQMEQENIPSCNKTTL 141 N ++ + + V+L+ +E + S + ++ Sbjct: 120 CNLNPSLSTALSESSRFVELVLALENVGLVSPSSVSV 156 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.141 0.427 Gapped Lambda K H 0.267 0.0483 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,407,148 Number of extensions: 56941 Number of successful extensions: 164 Number of sequences better than 10.0: 1 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 11 Length of query: 174 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 88 Effective length of database: 3,608,246 Effective search space: 317525648 Effective search space used: 317525648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 53 (24.8 bits)