RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764466|ref|YP_003064779.2| hypothetical protein
CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62]
         (174 letters)



>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane
           protein, E. coli, cell inner membrane, cell membrane,
           chaperone, electron transport, membrane; HET: UQ1; 3.30A
           {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A
           2k74_A*
          Length = 176

 Score = 69.3 bits (169), Expect = 4e-13
 Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 6/158 (3%)

Query: 17  IILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLSTRNHNSYWSTRL 76
           ++      + +  L  QHV    P  LCI E+   +     AL+               +
Sbjct: 17  LMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALI----GAIAPKTPLRYV 72

Query: 77  LLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSC 136
            ++      F  + ++  H  ++                E     +D            C
Sbjct: 73  AMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPE--WLPLDKWVPQVFVASGDC 130

Query: 137 NKTTLYVLGLSLAFWNIIVSFFLSFITSIAMLKISRKK 174
            +     LGL +  W + +      +  + ++    K 
Sbjct: 131 AERQWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKA 168


>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase;
           HET: MES; 2.00A {Oryza sativa japonica group}
          Length = 309

 Score = 27.2 bits (60), Expect = 1.8
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 87  FNMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQMEQENIPSCNKTTLYVLGL 146
           + +  ++++ G+ECG    + +    ++I                N+  C     +  G 
Sbjct: 247 YGVITNIVNGGLECGHGPDDRV---ANRIGFYQRYCGAFGIGTGGNL-DCYNQRPFNSGS 302

Query: 147 SLAFW 151
           S+   
Sbjct: 303 SVGLA 307


>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase,
           structural genomics, PSI- protein structure initiative;
           HET: HY0 PE4; 1.95A {Escherichia coli}
          Length = 362

 Score = 27.5 bits (60), Expect = 1.8
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 10  ANIPLPRIILL-NISGVIVCFLMIQHVGGYPPCDLCIQEQK 49
           A +P+P ++ +   S  +   +  +   G    DL   E  
Sbjct: 91  AALPIPEVLDIGEFSESLTYCIS-RRAQGVTLQDLPETELP 130


>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
           lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
           3mwe_A*
          Length = 425

 Score = 25.5 bits (55), Expect = 6.7
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 1   MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHV 35
             K++LS +     P   +L I G I  F  +   
Sbjct: 319 YAKTILSLMTREKHPDGKILIIGGSIANFTNVAAT 353


>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A
           {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
          Length = 195

 Score = 25.1 bits (55), Expect = 7.5
 Identities = 5/37 (13%), Positives = 16/37 (43%)

Query: 105 KNAICMNNSKIESITSTVDLLTQMEQENIPSCNKTTL 141
            N     ++ +   +  V+L+  +E   + S +  ++
Sbjct: 120 CNLNPSLSTALSESSRFVELVLALENVGLVSPSSVSV 156


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,407,148
Number of extensions: 56941
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 11
Length of query: 174
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 88
Effective length of database: 3,608,246
Effective search space: 317525648
Effective search space used: 317525648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.8 bits)