BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764466|ref|YP_003064779.2| hypothetical protein
CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62]
         (174 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764466|ref|YP_003064779.2| hypothetical protein CLIBASIA_01255 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 174

 Score =  353 bits (905), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALV 60
           MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALV
Sbjct: 1   MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHVGGYPPCDLCIQEQKIYYFGFLIALV 60

Query: 61  ADLSTRNHNSYWSTRLLLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITS 120
           ADLSTRNHNSYWSTRLLLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITS
Sbjct: 61  ADLSTRNHNSYWSTRLLLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITS 120

Query: 121 TVDLLTQMEQENIPSCNKTTLYVLGLSLAFWNIIVSFFLSFITSIAMLKISRKK 174
           TVDLLTQMEQENIPSCNKTTLYVLGLSLAFWNIIVSFFLSFITSIAMLKISRKK
Sbjct: 121 TVDLLTQMEQENIPSCNKTTLYVLGLSLAFWNIIVSFFLSFITSIAMLKISRKK 174


>gi|254780762|ref|YP_003065175.1| recombination protein RecR [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 201

 Score = 23.1 bits (48), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 40 PCDLCIQEQKIYYFGFLIALVADL 63
          PC +CI +Q+      ++  VADL
Sbjct: 71 PCAICIDQQRDASVIIVVEDVADL 94


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score = 23.1 bits (48), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 8   TLANIPLPRIILLNISGV 25
           TL+  P+PR + L I+GV
Sbjct: 778 TLSATPIPRTLQLAITGV 795


>gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 562

 Score = 23.1 bits (48), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 94  IHVGIECGIWEKNAICMNNSKIESI-TSTVDLLTQMEQENIPSCNKTTLYVLGL 146
           IH G+ C IW+++   +   +   I  + + L+ Q+E  ++ S + T+  ++ L
Sbjct: 111 IHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL 164



 Score = 22.3 bits (46), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 17  IILLNISGVIVCFLMIQHVGGYPPCDLCIQEQK 49
           I+L  + G + CFL+ + +    P  LC Q  K
Sbjct: 244 IMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLK 276


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 21.9 bits (45), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 35  VGGYPPCDLCIQEQKIYYF 53
           VGG  P +L + + K +YF
Sbjct: 169 VGGMRPSNLLLDQAKRFYF 187


>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 369

 Score = 21.9 bits (45), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 150 FWNIIVSFFLSFITSIAMLK 169
           FWN +V  + +FI S+ ++K
Sbjct: 71  FWNSLVILWKAFIASLRLIK 90


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.141    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,975
Number of Sequences: 1233
Number of extensions: 4012
Number of successful extensions: 24
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 174
length of database: 328,796
effective HSP length: 68
effective length of query: 106
effective length of database: 244,952
effective search space: 25964912
effective search space used: 25964912
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 35 (18.1 bits)