>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 87.1 bits (216), Expect = 1e-17 Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 11/296 (3%) Query: 242 LRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKY 301 ++ L IL GA+LV+ KL+ G +I + + + + PLE IIN L L++ + Sbjct: 388 TKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN----LQPKLQAARV 443 Query: 302 LINLNDFTTLLNSSDSKKEPIS-MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360 N + L++S K+ + + N I ++ + S ++ ++S TI S Sbjct: 444 ANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNIL-SDISLTIKMNSK 502 Query: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420 I G SG GKS ++G G I + I YL Q +F Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG 562 Query: 421 SITENIILSHDQN-SLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS- 478 SI EN++L +N S +I +DI ++ GYQT + + QK R++ Sbjct: 563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 Query: 479 -RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533 R + + +L++DE +LD + L ++ KTI+ ++H ++ SD Sbjct: 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLSVAKQSD 676

RPSBLAST alignment for GI: 255764467 and conserved domain: TIGR01193